Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77384.t1 | XP_013449185.1 | 99 | 293 | 3 | 0 | 28 | 320 | 85 | 377 | 1.90E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77384.t1 | Q38833 | 89.8 | 293 | 30 | 0 | 28 | 320 | 95 | 387 | 1.7e-155 | 550.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77384.t1 | A0A072U207 | 99.0 | 293 | 3 | 0 | 28 | 320 | 86 | 378 | 1.4e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050518 | MS.gene77384 | 0.809117 | 2.22E-50 | -1.69E-46 |
| MS.gene05087 | MS.gene77384 | 0.869887 | 2.21E-66 | -1.69E-46 |
| MS.gene054638 | MS.gene77384 | 0.831854 | 1.32E-55 | -1.69E-46 |
| MS.gene055634 | MS.gene77384 | 0.844301 | 8.23E-59 | -1.69E-46 |
| MS.gene056910 | MS.gene77384 | 0.826171 | 3.14E-54 | -1.69E-46 |
| MS.gene058719 | MS.gene77384 | 0.81111 | 8.25E-51 | -1.69E-46 |
| MS.gene059026 | MS.gene77384 | 0.852673 | 3.96E-61 | -1.69E-46 |
| MS.gene059079 | MS.gene77384 | 0.800022 | 1.75E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77384.t1 | MTR_7g069210 | 98.976 | 293 | 3 | 0 | 28 | 320 | 86 | 378 | 0.0 | 592 |
| MS.gene77384.t1 | MTR_7g069210 | 98.976 | 293 | 3 | 0 | 28 | 320 | 85 | 377 | 0.0 | 591 |
| MS.gene77384.t1 | MTR_7g069400 | 95.312 | 64 | 3 | 0 | 75 | 138 | 1 | 64 | 3.57e-37 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77384.t1 | AT3G51820 | 89.761 | 293 | 30 | 0 | 28 | 320 | 95 | 387 | 0.0 | 527 |
Find 77 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAAGAACTACCTTTAA+AGG | 0.156078 | 7.1:+32773114 | None:intergenic |
| ATATTCTGCACCTCCTTTAA+AGG | 0.191744 | 7.1:-32773127 | MS.gene77384:intron |
| CGGCCGGTATATTGGATATA+TGG | 0.204836 | 7.1:-32773299 | MS.gene77384:CDS |
| TGCAGGTAATCACTCAAATA+TGG | 0.218163 | 7.1:-32773347 | MS.gene77384:intron |
| TGGGCTGGTCAGGCTTTGTT+TGG | 0.238526 | 7.1:-32772848 | MS.gene77384:CDS |
| CTCGGTCATACCAATCATTC+AGG | 0.250216 | 7.1:+32773509 | None:intergenic |
| TAGTCTCTTCCTGTTGCTTT+TGG | 0.262705 | 7.1:-32772211 | MS.gene77384:CDS |
| GTTTGTGGTGCTGCTGCTTC+AGG | 0.285887 | 7.1:-32773924 | MS.gene77384:intron |
| AAAGACTTGTGGAGCTATTA+AGG | 0.297487 | 7.1:+32771664 | None:intergenic |
| TTCAATTAGGTGGGCTGGTC+AGG | 0.304263 | 7.1:-32772858 | MS.gene77384:intron |
| GGGCTGGTCAGGCTTTGTTT+GGG | 0.314315 | 7.1:-32772847 | MS.gene77384:CDS |
| TCTTACCACGGCCGGTATAT+TGG | 0.316270 | 7.1:-32773307 | MS.gene77384:CDS |
| CGTTTATTGCGTCAATTTCT+CGG | 0.319378 | 7.1:+32773491 | None:intergenic |
| AGATAGAGCTCTAGGGCTTC+AGG | 0.325348 | 7.1:-32772334 | MS.gene77384:intron |
| ACGTTTAAGTGGATGATCTT+TGG | 0.336396 | 7.1:-32774381 | None:intergenic |
| GAAATATGATGTTAAATATC+AGG | 0.343323 | 7.1:-32771479 | MS.gene77384:intron |
| TAGTATTACTATGCTCTCTT+TGG | 0.345506 | 7.1:+32774320 | None:intergenic |
| CCAGAAGGAATTGGTCTATA+AGG | 0.345917 | 7.1:+32773466 | None:intergenic |
| ACTAATGGAGGCCAAGTTAC+AGG | 0.346875 | 7.1:+32773957 | None:intergenic |
| CCTTATAGACCAATTCCTTC+TGG | 0.366717 | 7.1:-32773466 | MS.gene77384:CDS |
| TTGGTTCTGAAACTGCAAAA+TGG | 0.382549 | 7.1:-32772192 | MS.gene77384:CDS |
| CAAACTACACCCCACACTAA+TGG | 0.406437 | 7.1:+32773942 | None:intergenic |
| GATATTGCACCAGAAGGAAT+TGG | 0.406466 | 7.1:+32773457 | None:intergenic |
| TTAAAACAAAATGGATGGAT+TGG | 0.422434 | 7.1:-32773018 | MS.gene77384:CDS |
| GGCCGGTATATTGGATATAT+GGG | 0.424933 | 7.1:-32773298 | MS.gene77384:intron |
| AATGACTTCAAAAGTGTTGA+AGG | 0.433510 | 7.1:-32772357 | MS.gene77384:CDS |
| CAAATATGGGTGCTACTACT+AGG | 0.446234 | 7.1:-32773333 | MS.gene77384:CDS |
| AATGTATTGTGCAGAATATA+TGG | 0.451795 | 7.1:-32774004 | MS.gene77384:intron |
| ATACTCCGGCTATGCTGTAT+AGG | 0.453639 | 7.1:+32772792 | None:intergenic |
| GTTGAAGGAGATAGAGCTCT+AGG | 0.461795 | 7.1:-32772342 | MS.gene77384:CDS |
| GTGTATATCCTGTCAGGAAT+GGG | 0.463167 | 7.1:+32773638 | None:intergenic |
| TTTGATAAGGAAATTTCCAT+TGG | 0.464597 | 7.1:-32773708 | MS.gene77384:intron |
| AACTTGGCCTCCATTAGTGT+GGG | 0.467885 | 7.1:-32773952 | MS.gene77384:CDS |
| CAGAATATATATACGACAGC+AGG | 0.471101 | 7.1:+32773142 | None:intergenic |
| GTTTCAGAACCAAAAGCAAC+AGG | 0.478326 | 7.1:+32772202 | None:intergenic |
| AACTTACAAAGCCTGTAACT+TGG | 0.479729 | 7.1:-32773968 | MS.gene77384:CDS |
| TATTTAACATCATATTTCAC+GGG | 0.480151 | 7.1:+32771484 | None:intergenic |
| TTACCTGTGTATATCCTGTC+AGG | 0.481823 | 7.1:+32773632 | None:intergenic |
| TGGATTGGAAACTTTGCCCT+TGG | 0.488058 | 7.1:-32773003 | MS.gene77384:CDS |
| ATATTTAACATCATATTTCA+CGG | 0.490174 | 7.1:+32771483 | None:intergenic |
| GTGGTTGCAGGATATCTACT+TGG | 0.492900 | 7.1:-32771722 | MS.gene77384:intron |
| TGTGTATATCCTGTCAGGAA+TGG | 0.493799 | 7.1:+32773637 | None:intergenic |
| TCTAGTTAAAACAAAATGGA+TGG | 0.499910 | 7.1:-32773023 | MS.gene77384:intron |
| TGGTTGCAGGATATCTACTT+GGG | 0.500028 | 7.1:-32771721 | MS.gene77384:intron |
| AGTAAAGCTAATGCGTAATA+CGG | 0.507815 | 7.1:+32771689 | None:intergenic |
| GCAGGTAATCACTCAAATAT+GGG | 0.509287 | 7.1:-32773346 | MS.gene77384:intron |
| TTCTTGATGTTGAAGAAGCA+CGG | 0.515739 | 7.1:-32774344 | MS.gene77384:CDS |
| CAAGTTACATTAGTTTGCCA+TGG | 0.527841 | 7.1:-32772978 | MS.gene77384:intron |
| CACCCATATATCCAATATAC+CGG | 0.528142 | 7.1:+32773296 | None:intergenic |
| GCAGGATATCTACTTGGGGC+TGG | 0.529171 | 7.1:-32771716 | MS.gene77384:intron |
| TCGGTCATACCAATCATTCA+GGG | 0.530916 | 7.1:+32773510 | None:intergenic |
| TAACTTGGCCTCCATTAGTG+TGG | 0.535109 | 7.1:-32773953 | MS.gene77384:CDS |
| ATGTCTGGCCCATTCCTGAC+AGG | 0.537234 | 7.1:-32773646 | MS.gene77384:CDS |
| TATATCCAATATACCGGCCG+TGG | 0.550708 | 7.1:+32773302 | None:intergenic |
| CAACATCCTCAACGTTCCAA+TGG | 0.553343 | 7.1:+32773692 | None:intergenic |
| TGGTGCAATATCTGAAAATG+AGG | 0.567288 | 7.1:-32773446 | MS.gene77384:intron |
| AAAAGAACTACCTTTAAAGG+AGG | 0.568625 | 7.1:+32773117 | None:intergenic |
| CATAGTAATACTAATCTGCC+TGG | 0.572442 | 7.1:-32774310 | MS.gene77384:intron |
| AACTAATGTAACTTGCTCCA+AGG | 0.574854 | 7.1:+32772986 | None:intergenic |
| ATTACACAATTATCTGTCGC+TGG | 0.577211 | 7.1:-32772148 | MS.gene77384:intron |
| TTGAAGGAGATAGAGCTCTA+GGG | 0.578632 | 7.1:-32772341 | MS.gene77384:CDS |
| TTAGTGTGGGGTGTAGTTTG+TGG | 0.581268 | 7.1:-32773939 | MS.gene77384:CDS |
| CTAGGAGGTCTTACCACGGC+CGG | 0.583251 | 7.1:-32773315 | MS.gene77384:CDS |
| ACTAATGTAACTTGCTCCAA+GGG | 0.583686 | 7.1:+32772987 | None:intergenic |
| AAATTTCCATTGGAACGTTG+AGG | 0.585558 | 7.1:-32773698 | MS.gene77384:CDS |
| ACACTCCTATACAGCATAGC+CGG | 0.592211 | 7.1:-32772797 | MS.gene77384:CDS |
| GCAGGGATCCACCCAATGCA+AGG | 0.617051 | 7.1:+32773160 | None:intergenic |
| AGTGTGAGAACAATAATGTC+TGG | 0.621424 | 7.1:+32772815 | None:intergenic |
| ACTACACCCCACACTAATGG+AGG | 0.654210 | 7.1:+32773945 | None:intergenic |
| ACTGCAAAATGGATATGTGT+TGG | 0.658074 | 7.1:-32772181 | MS.gene77384:CDS |
| GGTTGCAGGATATCTACTTG+GGG | 0.664352 | 7.1:-32771720 | MS.gene77384:intron |
| AGAATATATATACGACAGCA+GGG | 0.669194 | 7.1:+32773143 | None:intergenic |
| ATATGGGTGCTACTACTAGG+AGG | 0.679036 | 7.1:-32773330 | MS.gene77384:CDS |
| ACTTGGCCTCCATTAGTGTG+GGG | 0.708420 | 7.1:-32773951 | MS.gene77384:CDS |
| ATTTAACATCATATTTCACG+GGG | 0.709607 | 7.1:+32771485 | None:intergenic |
| ATTCCTGACAGGATATACAC+AGG | 0.718157 | 7.1:-32773635 | MS.gene77384:intron |
| ACTACTAGGAGGTCTTACCA+CGG | 0.792284 | 7.1:-32773319 | MS.gene77384:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAGAACAAATTAAT+AGG | + | chr7.1:32771476-32771495 | None:intergenic | 10.0% |
| !! | ATATTTAACATCATATTTCA+CGG | + | chr7.1:32774189-32774208 | None:intergenic | 15.0% |
| !!! | TTTTTCTAGTTAAAACAAAA+TGG | - | chr7.1:32772642-32772661 | MS.gene77384:intron | 15.0% |
| !! | AAAAACAACTTATGTCTTAT+AGG | + | chr7.1:32773072-32773091 | None:intergenic | 20.0% |
| !! | AAAAGTAAATGAACATAACA+AGG | + | chr7.1:32772770-32772789 | None:intergenic | 20.0% |
| !! | AATTTATTAGCGTATATTTG+AGG | + | chr7.1:32773559-32773578 | None:intergenic | 20.0% |
| !! | ACAAATAAACAAGTAACAAA+AGG | + | chr7.1:32772281-32772300 | None:intergenic | 20.0% |
| !! | ACAATATTGCGAATTTAATT+TGG | - | chr7.1:32771500-32771519 | MS.gene77384:CDS | 20.0% |
| !! | AGCGTTAATTAATGTTAATA+CGG | + | chr7.1:32773684-32773703 | None:intergenic | 20.0% |
| !! | ATTTATTAGCGTATATTTGA+GGG | + | chr7.1:32773558-32773577 | None:intergenic | 20.0% |
| !! | GAAATATGATGTTAAATATC+AGG | - | chr7.1:32774190-32774209 | MS.gene77384:intron | 20.0% |
| !! | GGTAAAAAAAAATGTTCATA+TGG | + | chr7.1:32773655-32773674 | None:intergenic | 20.0% |
| !! | TATTTAACATCATATTTCAC+GGG | + | chr7.1:32774188-32774207 | None:intergenic | 20.0% |
| !! | TTTAAAAGAACTACCTTTAA+AGG | + | chr7.1:32772558-32772577 | None:intergenic | 20.0% |
| !!! | AACAATGTTATTTGAACTTA+GGG | + | chr7.1:32773249-32773268 | None:intergenic | 20.0% |
| ! | AACAAATTAATAGGCGTTTA+TGG | + | chr7.1:32771430-32771449 | None:intergenic | 25.0% |
| ! | AATGGAAATTTCCTTATCAA+AGG | + | chr7.1:32771962-32771981 | None:intergenic | 25.0% |
| ! | AATGTATTGTGCAGAATATA+TGG | - | chr7.1:32771665-32771684 | MS.gene77384:CDS | 25.0% |
| ! | AGGAGTAAGAACAAATTAAT+AGG | + | chr7.1:32771439-32771458 | None:intergenic | 25.0% |
| ! | ATAAAAACTTGAGACTGTTT+GGG | + | chr7.1:32773173-32773192 | None:intergenic | 25.0% |
| ! | ATGGAAATTTCCTTATCAAA+GGG | + | chr7.1:32771961-32771980 | None:intergenic | 25.0% |
| ! | ATTTAACATCATATTTCACG+GGG | + | chr7.1:32774187-32774206 | None:intergenic | 25.0% |
| ! | CTAAGCTACTTATCTAAATA+CGG | + | chr7.1:32772954-32772973 | None:intergenic | 25.0% |
| ! | CTTATTTCCATAAGCTAATT+AGG | + | chr7.1:32773104-32773123 | None:intergenic | 25.0% |
| ! | GCAATGTAAAACAGAAAATT+AGG | + | chr7.1:32773272-32773291 | None:intergenic | 25.0% |
| ! | TAATCAAACAAGATTGTCAA+AGG | + | chr7.1:32773440-32773459 | None:intergenic | 25.0% |
| ! | TCTAGTTAAAACAAAATGGA+TGG | - | chr7.1:32772646-32772665 | MS.gene77384:intron | 25.0% |
| ! | TTAAAACAAAATGGATGGAT+TGG | - | chr7.1:32772651-32772670 | MS.gene77384:intron | 25.0% |
| ! | TTTGATAAGGAAATTTCCAT+TGG | - | chr7.1:32771961-32771980 | MS.gene77384:intron | 25.0% |
| !! | AATGCAAGGTAAAAAAGTAT+AGG | + | chr7.1:32772498-32772517 | None:intergenic | 25.0% |
| !! | ATAAATTTTCTTATGTTGCC+AGG | - | chr7.1:32774307-32774326 | MS.gene77384:intron | 25.0% |
| !! | ATGCAAGGTAAAAAAGTATA+GGG | + | chr7.1:32772497-32772516 | None:intergenic | 25.0% |
| !! | GAACAATGTTATTTGAACTT+AGG | + | chr7.1:32773250-32773269 | None:intergenic | 25.0% |
| !! | GTTTTATATTCCCATTCAAT+AGG | + | chr7.1:32772098-32772117 | None:intergenic | 25.0% |
| !! | TATTCTTCATGACATTTTGT+TGG | - | chr7.1:32772906-32772925 | MS.gene77384:intron | 25.0% |
| !!! | ACTTTTGAAGTCATTTACAA+TGG | + | chr7.1:32773307-32773326 | None:intergenic | 25.0% |
| !!! | ATACTTTTTTACCTTGCATT+GGG | - | chr7.1:32772498-32772517 | MS.gene77384:intron | 25.0% |
| !!! | CATTGATTTCGTTTTCAATT+AGG | - | chr7.1:32772798-32772817 | MS.gene77384:CDS | 25.0% |
| !!! | TATACTTTTTTACCTTGCAT+TGG | - | chr7.1:32772497-32772516 | MS.gene77384:intron | 25.0% |
| AAAGTTCAGATTAGAGTTAC+TGG | + | chr7.1:32773385-32773404 | None:intergenic | 30.0% | |
| ACATTAATTAACGCTGCAAA+AGG | - | chr7.1:32773689-32773708 | MS.gene77384:CDS | 30.0% | |
| ACTTATTTGCACTTATCTAC+GGG | + | chr7.1:32773197-32773216 | None:intergenic | 30.0% | |
| AGAATATATATACGACAGCA+GGG | + | chr7.1:32772529-32772548 | None:intergenic | 30.0% | |
| AGTAAAGCTAATGCGTAATA+CGG | + | chr7.1:32773983-32774002 | None:intergenic | 30.0% | |
| ATAAACTATGCCCTTTGATA+AGG | - | chr7.1:32771948-32771967 | MS.gene77384:intron | 30.0% | |
| ATAAATGTTGTGATTGCAAC+AGG | - | chr7.1:32773804-32773823 | MS.gene77384:intron | 30.0% | |
| CATAAAAACTTGAGACTGTT+TGG | + | chr7.1:32773174-32773193 | None:intergenic | 30.0% | |
| GAAGAATATAGTACATACTC+CGG | + | chr7.1:32772894-32772913 | None:intergenic | 30.0% | |
| GACTTATTTGCACTTATCTA+CGG | + | chr7.1:32773198-32773217 | None:intergenic | 30.0% | |
| GCTTATATGATAAGCTTGTA+TGG | + | chr7.1:32772997-32773016 | None:intergenic | 30.0% | |
| TAGTATTACTATGCTCTCTT+TGG | + | chr7.1:32771352-32771371 | None:intergenic | 30.0% | |
| TATTCAATGCTTCATCTTCA+TGG | - | chr7.1:32771874-32771893 | MS.gene77384:intron | 30.0% | |
| TTAATGTTAATACGGTGACT+TGG | + | chr7.1:32773676-32773695 | None:intergenic | 30.0% | |
| TTTACCTGAAAAAAGACTTG+TGG | + | chr7.1:32774019-32774038 | None:intergenic | 30.0% | |
| ! | AAAAGAACTACCTTTAAAGG+AGG | + | chr7.1:32772555-32772574 | None:intergenic | 30.0% |
| ! | AAATTTGCATTCTGAAGAGA+TGG | + | chr7.1:32772424-32772443 | None:intergenic | 30.0% |
| ! | ATTTTTGCTCAAAAATCTGC+AGG | - | chr7.1:32772305-32772324 | MS.gene77384:intron | 30.0% |
| ! | CTCTTCAGAATGCAAATTTT+CGG | - | chr7.1:32772425-32772444 | MS.gene77384:intron | 30.0% |
| ! | GATTTCGTTTTCAATTAGGT+GGG | - | chr7.1:32772802-32772821 | MS.gene77384:CDS | 30.0% |
| ! | TAGCTATCCTAATTAGCTTA+TGG | - | chr7.1:32773094-32773113 | MS.gene77384:intron | 30.0% |
| ! | TGACTCAGAAAGTATAACTT+TGG | - | chr7.1:32771538-32771557 | MS.gene77384:intron | 30.0% |
| ! | TGATTTCGTTTTCAATTAGG+TGG | - | chr7.1:32772801-32772820 | MS.gene77384:CDS | 30.0% |
| ! | TTCTGTTTTACATTGCAGTT+GGG | - | chr7.1:32773276-32773295 | MS.gene77384:intron | 30.0% |
| ! | TTTCTGTTTTACATTGCAGT+TGG | - | chr7.1:32773275-32773294 | MS.gene77384:intron | 30.0% |
| !! | AACAAATTAATAGGCGTTGA+TGG | + | chr7.1:32771467-32771486 | None:intergenic | 30.0% |
| !! | AATGACTTCAAAAGTGTTGA+AGG | - | chr7.1:32773312-32773331 | MS.gene77384:CDS | 30.0% |
| !! | ATTAGACGAAGAAGTTTTAG+AGG | + | chr7.1:32774229-32774248 | None:intergenic | 30.0% |
| !! | TAGACTGCTTTTATGTATTG+TGG | - | chr7.1:32774103-32774122 | MS.gene77384:intron | 30.0% |
| !!! | CATTTCGCTGATTTTATATG+TGG | - | chr7.1:32773928-32773947 | MS.gene77384:CDS | 30.0% |
| AAAGACTTGTGGAGCTATTA+AGG | + | chr7.1:32774008-32774027 | None:intergenic | 35.0% | |
| AAATTTCCATTGGAACGTTG+AGG | - | chr7.1:32771971-32771990 | MS.gene77384:intron | 35.0% | |
| AACAGACCAAGAACCAAAAA+TGG | + | chr7.1:32774344-32774363 | None:intergenic | 35.0% | |
| AACTTACAAAGCCTGTAACT+TGG | - | chr7.1:32771701-32771720 | MS.gene77384:CDS | 35.0% | |
| ACATTAAAATGCGACATGCA+TGG | - | chr7.1:32771785-32771804 | MS.gene77384:intron | 35.0% | |
| ACTGCAAAATGGATATGTGT+TGG | - | chr7.1:32773488-32773507 | MS.gene77384:CDS | 35.0% | |
| AGTGTGAGAACAATAATGTC+TGG | + | chr7.1:32772857-32772876 | None:intergenic | 35.0% | |
| ATATTCTGCACCTCCTTTAA+AGG | - | chr7.1:32772542-32772561 | MS.gene77384:intron | 35.0% | |
| ATTACACAATTATCTGTCGC+TGG | - | chr7.1:32773521-32773540 | MS.gene77384:intron | 35.0% | |
| ATTTAATGACGCAAGAGCTA+AGG | - | chr7.1:32773737-32773756 | MS.gene77384:intron | 35.0% | |
| CAACGACTTATCAAAAGAGA+AGG | + | chr7.1:32772724-32772743 | None:intergenic | 35.0% | |
| CAAGGCAAAAGATGAAAAGA+AGG | + | chr7.1:32774141-32774160 | None:intergenic | 35.0% | |
| CAATTGTCATAGCAAATCAC+AGG | + | chr7.1:32771827-32771846 | None:intergenic | 35.0% | |
| CACCCATATATCCAATATAC+CGG | + | chr7.1:32772376-32772395 | None:intergenic | 35.0% | |
| CAGAATATATATACGACAGC+AGG | + | chr7.1:32772530-32772549 | None:intergenic | 35.0% | |
| CATAGTAATACTAATCTGCC+TGG | - | chr7.1:32771359-32771378 | MS.gene77384:intron | 35.0% | |
| CGTTTATTGCGTCAATTTCT+CGG | + | chr7.1:32772181-32772200 | None:intergenic | 35.0% | |
| CTTAGTCAAATGACCATCAA+AGG | + | chr7.1:32772614-32772633 | None:intergenic | 35.0% | |
| GAGAAAATACTTGAACTGCA+AGG | + | chr7.1:32774159-32774178 | None:intergenic | 35.0% | |
| GCAGGTAATCACTCAAATAT+GGG | - | chr7.1:32772323-32772342 | MS.gene77384:intron | 35.0% | |
| GGTACTCACTAAACAATTAC+AGG | - | chr7.1:32772396-32772415 | MS.gene77384:intron | 35.0% | |
| GGTATATTGGATATATGGGT+GGG | - | chr7.1:32772375-32772394 | MS.gene77384:CDS | 35.0% | |
| TATACACTATACAGTGTACC+AGG | + | chr7.1:32771380-32771399 | None:intergenic | 35.0% | |
| TATTCCCATTCAATAGGAGT+CGG | + | chr7.1:32772092-32772111 | None:intergenic | 35.0% | |
| TGCAGGTAATCACTCAAATA+TGG | - | chr7.1:32772322-32772341 | MS.gene77384:intron | 35.0% | |
| TGGTGCAATATCTGAAAATG+AGG | - | chr7.1:32772223-32772242 | MS.gene77384:intron | 35.0% | |
| TTCTTGATGTTGAAGAAGCA+CGG | - | chr7.1:32771325-32771344 | MS.gene77384:CDS | 35.0% | |
| TTTAATGACGCAAGAGCTAA+GGG | - | chr7.1:32773738-32773757 | MS.gene77384:intron | 35.0% | |
| ! | AAATTTTCTCCTTTACAGGC+AGG | - | chr7.1:32772462-32772481 | MS.gene77384:intron | 35.0% |
| ! | AATGCAAATTTTCGGAAGCT+TGG | - | chr7.1:32772433-32772452 | MS.gene77384:intron | 35.0% |
| ! | AATTTTCTCCTTTACAGGCA+GGG | - | chr7.1:32772463-32772482 | MS.gene77384:intron | 35.0% |
| ! | CTGATTTTATATGTGGTTGC+AGG | - | chr7.1:32773935-32773954 | MS.gene77384:CDS | 35.0% |
| ! | GCAGTTCAAGTATTTTCTCA+AGG | - | chr7.1:32774160-32774179 | MS.gene77384:intron | 35.0% |
| ! | GCTCAAATTTTCTCCTTTAC+AGG | - | chr7.1:32772458-32772477 | MS.gene77384:intron | 35.0% |
| ! | TCTTTCTCTTTTGCCTTTGA+TGG | - | chr7.1:32772598-32772617 | MS.gene77384:intron | 35.0% |
| ! | TTTTCAGATATTGCACCAGA+AGG | + | chr7.1:32772221-32772240 | None:intergenic | 35.0% |
| !! | AACTAATGTAACTTGCTCCA+AGG | + | chr7.1:32772686-32772705 | None:intergenic | 35.0% |
| !! | ACTAATGTAACTTGCTCCAA+GGG | + | chr7.1:32772685-32772704 | None:intergenic | 35.0% |
| !! | ATTTTGTGCATGATGATGTC+TGG | - | chr7.1:32772008-32772027 | MS.gene77384:intron | 35.0% |
| !! | CAAGTTACATTAGTTTGCCA+TGG | - | chr7.1:32772691-32772710 | MS.gene77384:intron | 35.0% |
| !! | TTGGTTCTGAAACTGCAAAA+TGG | - | chr7.1:32773477-32773496 | MS.gene77384:CDS | 35.0% |
| !! | TTTACCGACTCCTATTGAAT+GGG | - | chr7.1:32772085-32772104 | MS.gene77384:intron | 35.0% |
| !!! | ATTTTTGGTTCTTGGTCTGT+TGG | - | chr7.1:32774343-32774362 | MS.gene77384:CDS | 35.0% |
| !!! | TTTTACCGACTCCTATTGAA+TGG | - | chr7.1:32772084-32772103 | MS.gene77384:intron | 35.0% |
| ACTTAGGGTCTGTTTGACAT+AGG | + | chr7.1:32773234-32773253 | None:intergenic | 40.0% | |
| ATTCCTGACAGGATATACAC+AGG | - | chr7.1:32772034-32772053 | MS.gene77384:intron | 40.0% | |
| CCAATCATTCAGGGTCTAAA+AGG | + | chr7.1:32772153-32772172 | None:intergenic | 40.0% | |
| CCTTATAGACCAATTCCTTC+TGG | - | chr7.1:32772203-32772222 | MS.gene77384:CDS | 40.0% | |
| CGGTATATTGGATATATGGG+TGG | - | chr7.1:32772374-32772393 | MS.gene77384:CDS | 40.0% | |
| CTTAGGGTCTGTTTGACATA+GGG | + | chr7.1:32773233-32773252 | None:intergenic | 40.0% | |
| GATATTGCACCAGAAGGAAT+TGG | + | chr7.1:32772215-32772234 | None:intergenic | 40.0% | |
| GGCCGGTATATTGGATATAT+GGG | - | chr7.1:32772371-32772390 | MS.gene77384:CDS | 40.0% | |
| GTGTATATCCTGTCAGGAAT+GGG | + | chr7.1:32772034-32772053 | None:intergenic | 40.0% | |
| GTTTCAGAACCAAAAGCAAC+AGG | + | chr7.1:32773470-32773489 | None:intergenic | 40.0% | |
| TCGGTCATACCAATCATTCA+GGG | + | chr7.1:32772162-32772181 | None:intergenic | 40.0% | |
| TGGTATTACAACAACAACGC+TGG | - | chr7.1:32773619-32773638 | MS.gene77384:intron | 40.0% | |
| TGGTTGCAGGATATCTACTT+GGG | - | chr7.1:32773948-32773967 | MS.gene77384:CDS | 40.0% | |
| TGTGTATATCCTGTCAGGAA+TGG | + | chr7.1:32772035-32772054 | None:intergenic | 40.0% | |
| TGTTTGACATAGGGTCTGTT+TGG | + | chr7.1:32773224-32773243 | None:intergenic | 40.0% | |
| TTACCTGTGTATATCCTGTC+AGG | + | chr7.1:32772040-32772059 | None:intergenic | 40.0% | |
| TTATAACAAACAGCTGCTGC+TGG | - | chr7.1:32773859-32773878 | MS.gene77384:intron | 40.0% | |
| TTGAAGGAGATAGAGCTCTA+GGG | - | chr7.1:32773328-32773347 | MS.gene77384:CDS | 40.0% | |
| ! | AATAGGCGTTTATGGATTGC+AGG | + | chr7.1:32771422-32771441 | None:intergenic | 40.0% |
| ! | CATGCTTTGACTGTTTTGCA+TGG | - | chr7.1:32773599-32773618 | MS.gene77384:intron | 40.0% |
| ! | CCAGAAGGAATTGGTCTATA+AGG | + | chr7.1:32772206-32772225 | None:intergenic | 40.0% |
| ! | CCTTTTAGACCCTGAATGAT+TGG | - | chr7.1:32772150-32772169 | MS.gene77384:CDS | 40.0% |
| !! | CAAATATGGGTGCTACTACT+AGG | - | chr7.1:32772336-32772355 | MS.gene77384:CDS | 40.0% |
| !! | TACATTAGTTTGCCATGGTG+TGG | - | chr7.1:32772696-32772715 | MS.gene77384:intron | 40.0% |
| !!! | AGCTCCACAAGTCTTTTTTC+AGG | - | chr7.1:32774012-32774031 | MS.gene77384:intron | 40.0% |
| !!! | CTTTTTTACCTTGCATTGGG+TGG | - | chr7.1:32772501-32772520 | MS.gene77384:intron | 40.0% |
| !!! | GCACAACCATTTTTGGTTCT+TGG | - | chr7.1:32774335-32774354 | MS.gene77384:CDS | 40.0% |
| !!! | TAGTCTCTTCCTGTTGCTTT+TGG | - | chr7.1:32773458-32773477 | MS.gene77384:CDS | 40.0% |
| AAAATGGTTGTGCACTAGCC+TGG | + | chr7.1:32774328-32774347 | None:intergenic | 45.0% | |
| AAATCATGCCCTGCCTGTAA+AGG | + | chr7.1:32772474-32772493 | None:intergenic | 45.0% | |
| AACTTGGCCTCCATTAGTGT+GGG | - | chr7.1:32771717-32771736 | MS.gene77384:intron | 45.0% | |
| ACACTCCTATACAGCATAGC+CGG | - | chr7.1:32772872-32772891 | MS.gene77384:intron | 45.0% | |
| ACTAATGGAGGCCAAGTTAC+AGG | + | chr7.1:32771715-32771734 | None:intergenic | 45.0% | |
| ACTACTAGGAGGTCTTACCA+CGG | - | chr7.1:32772350-32772369 | MS.gene77384:CDS | 45.0% | |
| ATACTCCGGCTATGCTGTAT+AGG | + | chr7.1:32772880-32772899 | None:intergenic | 45.0% | |
| CAAACTACACCCCACACTAA+TGG | + | chr7.1:32771730-32771749 | None:intergenic | 45.0% | |
| CAACATCCTCAACGTTCCAA+TGG | + | chr7.1:32771980-32771999 | None:intergenic | 45.0% | |
| CGGCCGGTATATTGGATATA+TGG | - | chr7.1:32772370-32772389 | MS.gene77384:CDS | 45.0% | |
| CTCGGTCATACCAATCATTC+AGG | + | chr7.1:32772163-32772182 | None:intergenic | 45.0% | |
| GGTTGCAGGATATCTACTTG+GGG | - | chr7.1:32773949-32773968 | MS.gene77384:CDS | 45.0% | |
| GTGGTTGCAGGATATCTACT+TGG | - | chr7.1:32773947-32773966 | MS.gene77384:CDS | 45.0% | |
| GTTGAAGGAGATAGAGCTCT+AGG | - | chr7.1:32773327-32773346 | MS.gene77384:CDS | 45.0% | |
| TAACTTGGCCTCCATTAGTG+TGG | - | chr7.1:32771716-32771735 | MS.gene77384:intron | 45.0% | |
| TATATCCAATATACCGGCCG+TGG | + | chr7.1:32772370-32772389 | None:intergenic | 45.0% | |
| TTAGTGTGGGGTGTAGTTTG+TGG | - | chr7.1:32771730-32771749 | MS.gene77384:intron | 45.0% | |
| ! | GGCTAGTGCACAACCATTTT+TGG | - | chr7.1:32774328-32774347 | MS.gene77384:CDS | 45.0% |
| ! | TCGTTTTCAATTAGGTGGGC+TGG | - | chr7.1:32772806-32772825 | MS.gene77384:CDS | 45.0% |
| ! | TGGATTGGAAACTTTGCCCT+TGG | - | chr7.1:32772666-32772685 | MS.gene77384:intron | 45.0% |
| !! | AAAGAGAAGGTACCACACCA+TGG | + | chr7.1:32772711-32772730 | None:intergenic | 45.0% |
| !! | AATAGGCGTTGATGGATTGC+AGG | + | chr7.1:32771459-32771478 | None:intergenic | 45.0% |
| !! | ATATGGGTGCTACTACTAGG+AGG | - | chr7.1:32772339-32772358 | MS.gene77384:CDS | 45.0% |
| ACTACACCCCACACTAATGG+AGG | + | chr7.1:32771727-32771746 | None:intergenic | 50.0% | |
| ACTTGGCCTCCATTAGTGTG+GGG | - | chr7.1:32771718-32771737 | MS.gene77384:intron | 50.0% | |
| TCTTACCACGGCCGGTATAT+TGG | - | chr7.1:32772362-32772381 | MS.gene77384:CDS | 50.0% | |
| !! | AGATAGAGCTCTAGGGCTTC+AGG | - | chr7.1:32773335-32773354 | MS.gene77384:CDS | 50.0% |
| !! | TTCAATTAGGTGGGCTGGTC+AGG | - | chr7.1:32772811-32772830 | MS.gene77384:CDS | 50.0% |
| ATGTCTGGCCCATTCCTGAC+AGG | - | chr7.1:32772023-32772042 | MS.gene77384:intron | 55.0% | |
| GCAGGATATCTACTTGGGGC+TGG | - | chr7.1:32773953-32773972 | MS.gene77384:CDS | 55.0% | |
| !! | GGGCTGGTCAGGCTTTGTTT+GGG | - | chr7.1:32772822-32772841 | MS.gene77384:CDS | 55.0% |
| !! | GTTTGTGGTGCTGCTGCTTC+AGG | - | chr7.1:32771745-32771764 | MS.gene77384:intron | 55.0% |
| !! | TGGGCTGGTCAGGCTTTGTT+TGG | - | chr7.1:32772821-32772840 | MS.gene77384:CDS | 55.0% |
| CTAGGAGGTCTTACCACGGC+CGG | - | chr7.1:32772354-32772373 | MS.gene77384:CDS | 60.0% | |
| GCAGGGATCCACCCAATGCA+AGG | + | chr7.1:32772512-32772531 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32771300 | 32774391 | 32771300 | ID=MS.gene77384 |
| chr7.1 | mRNA | 32771300 | 32774391 | 32771300 | ID=MS.gene77384.t1;Parent=MS.gene77384 |
| chr7.1 | exon | 32774311 | 32774391 | 32774311 | ID=MS.gene77384.t1.exon1;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32774311 | 32774391 | 32774311 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32773925 | 32774012 | 32773925 | ID=MS.gene77384.t1.exon2;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32773925 | 32774012 | 32773925 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32773636 | 32773721 | 32773636 | ID=MS.gene77384.t1.exon3;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32773636 | 32773721 | 32773636 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32773447 | 32773533 | 32773447 | ID=MS.gene77384.t1.exon4;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32773447 | 32773533 | 32773447 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32773299 | 32773364 | 32773299 | ID=MS.gene77384.t1.exon5;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32773299 | 32773364 | 32773299 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32773128 | 32773211 | 32773128 | ID=MS.gene77384.t1.exon6;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32773128 | 32773211 | 32773128 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32772979 | 32773040 | 32772979 | ID=MS.gene77384.t1.exon7;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32772979 | 32773040 | 32772979 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32772796 | 32772871 | 32772796 | ID=MS.gene77384.t1.exon8;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32772796 | 32772871 | 32772796 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32772335 | 32772397 | 32772335 | ID=MS.gene77384.t1.exon9;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32772335 | 32772397 | 32772335 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32772149 | 32772230 | 32772149 | ID=MS.gene77384.t1.exon10;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32772149 | 32772230 | 32772149 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32771658 | 32771734 | 32771658 | ID=MS.gene77384.t1.exon11;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32771658 | 32771734 | 32771658 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32771480 | 32771527 | 32771480 | ID=MS.gene77384.t1.exon12;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32771480 | 32771527 | 32771480 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| chr7.1 | exon | 32771300 | 32771362 | 32771300 | ID=MS.gene77384.t1.exon13;Parent=MS.gene77384.t1 |
| chr7.1 | CDS | 32771300 | 32771362 | 32771300 | ID=cds.MS.gene77384.t1;Parent=MS.gene77384.t1 |
| Gene Sequence |
| Protein sequence |
