Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77442.t1 | XP_003613763.2 | 80 | 912 | 128 | 5 | 1 | 900 | 1 | 870 | 0.00E+00 | 1116.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77442.t1 | G7KF75 | 80.0 | 912 | 128 | 5 | 1 | 900 | 1 | 870 | 0.0e+00 | 1116.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049786 | MS.gene77442 | 0.810581 | 1.07E-50 | -1.69E-46 |
MS.gene050312 | MS.gene77442 | 0.800844 | 1.19E-48 | -1.69E-46 |
MS.gene054479 | MS.gene77442 | 0.811419 | 7.07E-51 | -1.69E-46 |
MS.gene055701 | MS.gene77442 | 0.803401 | 3.55E-49 | -1.69E-46 |
MS.gene058081 | MS.gene77442 | 0.823226 | 1.55E-53 | -1.69E-46 |
MS.gene060527 | MS.gene77442 | 0.800751 | 1.24E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77442.t1 | MTR_5g040600 | 86.952 | 912 | 65 | 5 | 1 | 900 | 1 | 870 | 0.0 | 1444 |
MS.gene77442.t1 | MTR_8g467380 | 59.887 | 354 | 119 | 6 | 561 | 899 | 452 | 797 | 4.20e-124 | 396 |
MS.gene77442.t1 | MTR_7g010160 | 42.636 | 387 | 188 | 9 | 533 | 900 | 336 | 707 | 1.53e-89 | 301 |
MS.gene77442.t1 | MTR_8g467390 | 47.305 | 334 | 152 | 8 | 532 | 849 | 38 | 363 | 4.26e-76 | 253 |
MS.gene77442.t1 | MTR_4g005350 | 30.319 | 376 | 196 | 14 | 550 | 901 | 55 | 388 | 1.44e-23 | 105 |
MS.gene77442.t1 | MTR_6g084440 | 30.714 | 280 | 169 | 8 | 627 | 901 | 305 | 564 | 5.71e-18 | 89.4 |
MS.gene77442.t1 | MTR_6g084440 | 30.851 | 282 | 168 | 9 | 627 | 901 | 305 | 566 | 8.39e-17 | 85.5 |
MS.gene77442.t1 | MTR_8g104270 | 31.507 | 219 | 129 | 7 | 695 | 901 | 315 | 524 | 4.41e-15 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77442.t1 | AT5G39785 | 40.827 | 387 | 185 | 12 | 556 | 913 | 207 | 578 | 3.67e-80 | 272 |
MS.gene77442.t1 | AT5G39785 | 40.827 | 387 | 185 | 12 | 556 | 913 | 207 | 578 | 3.67e-80 | 272 |
MS.gene77442.t1 | AT5G39785 | 40.827 | 387 | 185 | 12 | 556 | 913 | 207 | 578 | 3.67e-80 | 272 |
MS.gene77442.t1 | AT5G39785 | 40.464 | 388 | 186 | 13 | 556 | 913 | 207 | 579 | 1.19e-77 | 265 |
MS.gene77442.t1 | AT1G69610 | 44.722 | 360 | 160 | 11 | 557 | 900 | 218 | 554 | 1.01e-74 | 257 |
MS.gene77442.t1 | AT5G39785 | 38.350 | 412 | 185 | 13 | 556 | 913 | 207 | 603 | 1.46e-74 | 258 |
MS.gene77442.t1 | AT1G69610 | 44.722 | 360 | 160 | 11 | 557 | 900 | 262 | 598 | 4.13e-74 | 256 |
MS.gene77442.t1 | AT1G69610 | 44.722 | 360 | 160 | 11 | 557 | 900 | 263 | 599 | 4.44e-74 | 256 |
MS.gene77442.t1 | AT1G73850 | 28.333 | 300 | 169 | 9 | 627 | 901 | 317 | 595 | 9.80e-19 | 91.7 |
MS.gene77442.t1 | AT1G73850 | 28.333 | 300 | 169 | 9 | 627 | 901 | 317 | 595 | 9.80e-19 | 91.7 |
MS.gene77442.t1 | AT3G01175 | 29.043 | 303 | 160 | 12 | 627 | 900 | 262 | 538 | 1.19e-17 | 88.2 |
MS.gene77442.t1 | AT3G20260 | 27.027 | 296 | 177 | 9 | 627 | 901 | 123 | 400 | 1.21e-17 | 87.0 |
Find 132 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACTCTTTGTATGCATTT+TGG | 0.094036 | 5.1:+30785341 | None:intergenic |
AAAAGATATAAGTTGCTTTC+TGG | 0.136193 | 5.1:-30785431 | MS.gene77442:CDS |
GATGATAAAGTTTCAAAATT+TGG | 0.171216 | 5.1:-30784983 | MS.gene77442:CDS |
GTTCGAACAGATAAAGAAAA+TGG | 0.172724 | 5.1:-30782639 | MS.gene77442:CDS |
CCATTTGAGATGGTGGATTT+TGG | 0.181688 | 5.1:+30783783 | None:intergenic |
GTTGGTCCTCATGGTGCTTT+TGG | 0.185637 | 5.1:+30781708 | None:intergenic |
CTTCATGTTCCAGCTATTAA+AGG | 0.195836 | 5.1:-30783435 | MS.gene77442:intron |
AATAGAAGGCTCTGAATTTA+AGG | 0.204409 | 5.1:-30785767 | MS.gene77442:CDS |
TGAAAGGTTAAGAAGTTTAA+TGG | 0.238467 | 5.1:-30776512 | MS.gene77442:intron |
AAGAATCAATGCGTGTGTTT+TGG | 0.250995 | 5.1:-30782668 | MS.gene77442:CDS |
TGTTTCAGGTTTCTTAAATT+AGG | 0.252942 | 5.1:-30786381 | MS.gene77442:intron |
TTTAATTCTTCAACCACTTT+TGG | 0.284097 | 5.1:+30784662 | None:intergenic |
GAAGAAACAGAGCAAGAAAC+AGG | 0.284674 | 5.1:-30785520 | MS.gene77442:CDS |
GCTACGATGTAGGAGGAAAA+AGG | 0.319167 | 5.1:-30776460 | MS.gene77442:CDS |
TCATCAACTTCATATAGATT+TGG | 0.328013 | 5.1:-30783691 | MS.gene77442:CDS |
GTTTCAATTTCATGATCATT+TGG | 0.329803 | 5.1:+30785967 | None:intergenic |
AATTATGTGTTCTATTCATT+TGG | 0.341860 | 5.1:-30786514 | MS.gene77442:CDS |
ACTAGAAGGTTTGCAATTGC+AGG | 0.343665 | 5.1:+30782570 | None:intergenic |
AATAGATGAAAAGGATATAA+AGG | 0.347958 | 5.1:-30785653 | MS.gene77442:CDS |
GGTATTGAAATTAATTTAAG+AGG | 0.353651 | 5.1:+30783804 | None:intergenic |
CTAGTTCAAGTGGTCTAATC+TGG | 0.355957 | 5.1:-30785135 | MS.gene77442:CDS |
ACGCTCTCTTTGGTGCATCT+TGG | 0.357608 | 5.1:-30776485 | MS.gene77442:CDS |
TGCAACCTTCCACTTGCAAT+TGG | 0.357673 | 5.1:+30782702 | None:intergenic |
CATGAGATTAGCAAGAAAAT+AGG | 0.358407 | 5.1:-30785598 | MS.gene77442:CDS |
CTTTATCATCAAATAAAGAT+TGG | 0.363583 | 5.1:+30784996 | None:intergenic |
ATGAGAGATGAAGGAATAGA+AGG | 0.372759 | 5.1:-30785031 | MS.gene77442:CDS |
TAATGGTGTGACGCTCTCTT+TGG | 0.377417 | 5.1:-30776495 | MS.gene77442:CDS |
TTTGCTACCAAGAAACTCAT+AGG | 0.381015 | 5.1:+30785081 | None:intergenic |
TAAAGAATCGTTGTGTGATT+AGG | 0.384028 | 5.1:-30783464 | MS.gene77442:CDS |
CGCTTTGAGAGCGAGGTGTT+TGG | 0.388271 | 5.1:-30785235 | MS.gene77442:CDS |
ACTTCATATAGATTTGGAAT+TGG | 0.398632 | 5.1:-30783685 | MS.gene77442:CDS |
GATTTGGAATTGGTATATGT+TGG | 0.401399 | 5.1:-30783675 | MS.gene77442:CDS |
TTTACATAATTCTGAATCCT+TGG | 0.404409 | 5.1:+30783483 | None:intergenic |
CCAACTTGATCATGAGCAAT+TGG | 0.406727 | 5.1:-30781690 | MS.gene77442:CDS |
TTGGATTGCGATTGATTTCA+AGG | 0.415118 | 5.1:-30781658 | MS.gene77442:CDS |
AGCTGCACTTCAATCTTCAA+TGG | 0.422108 | 5.1:+30784638 | None:intergenic |
CATAGGTATAACCATGTTGC+TGG | 0.424551 | 5.1:-30783570 | MS.gene77442:CDS |
TATCAAACCATGCATGCATT+AGG | 0.425507 | 5.1:-30784533 | MS.gene77442:intron |
GATTCTTAGATGATAGTAAA+GGG | 0.426605 | 5.1:-30782737 | MS.gene77442:intron |
AATGTGATTTCTAAGCAAAT+TGG | 0.427664 | 5.1:-30782609 | MS.gene77442:CDS |
GTATTCGAATGTCCACTAGA+AGG | 0.428041 | 5.1:+30782556 | None:intergenic |
CCAAAATCCACCATCTCAAA+TGG | 0.430562 | 5.1:-30783783 | MS.gene77442:CDS |
AAACTGAATCGCAATGTTGT+TGG | 0.431487 | 5.1:+30785403 | None:intergenic |
TTGGACAAATTTGCCTCTCA+TGG | 0.432910 | 5.1:-30783656 | MS.gene77442:CDS |
TGAAAATGAGTATATAGAAA+TGG | 0.433374 | 5.1:-30784942 | MS.gene77442:CDS |
ATCCTTGGTCCACCTTGAAA+TGG | 0.434484 | 5.1:+30783498 | None:intergenic |
CTGAAGGACATAGTAAGAAC+TGG | 0.437425 | 5.1:-30781752 | MS.gene77442:CDS |
AAAGATGAAAAGGAAATAGA+AGG | 0.441294 | 5.1:-30785781 | MS.gene77442:CDS |
AACTCTAGTGTTCATGAAGA+TGG | 0.443494 | 5.1:-30785874 | MS.gene77442:CDS |
CTCTCTTTGGTGCATCTTGG+AGG | 0.443611 | 5.1:-30776482 | MS.gene77442:CDS |
ATGACTCACAAAAGTCTCAT+AGG | 0.450321 | 5.1:-30783587 | MS.gene77442:CDS |
TTCAACTTCTTCTATGATTG+TGG | 0.458028 | 5.1:+30784727 | None:intergenic |
TGGGAAACGGTTGAAACATC+AGG | 0.458060 | 5.1:+30785361 | None:intergenic |
TGGTACCAAAATAGATGAAA+AGG | 0.460435 | 5.1:-30785662 | MS.gene77442:CDS |
GCTAGAATTCAATGATCAAA+TGG | 0.461114 | 5.1:-30784618 | MS.gene77442:CDS |
CATTCGAATACAACTACAAA+AGG | 0.463325 | 5.1:-30782544 | MS.gene77442:intron |
GAAGATGGAGGAAAATTTGA+AGG | 0.467214 | 5.1:-30785859 | MS.gene77442:CDS |
TTCGAACAGATAAAGAAAAT+GGG | 0.468460 | 5.1:-30782638 | MS.gene77442:CDS |
ATAGAGAATGAGCCATTTCA+AGG | 0.469644 | 5.1:-30783510 | MS.gene77442:CDS |
GAATAATCTCTCAAAATTTG+TGG | 0.472353 | 5.1:-30783761 | MS.gene77442:CDS |
TGCTTGGAAAATGGTTCAAA+TGG | 0.474340 | 5.1:-30785931 | MS.gene77442:CDS |
AATATGTCACCTTTAATAGC+TGG | 0.480683 | 5.1:+30783426 | None:intergenic |
CTTTCATGTGTAGCCAACAT+AGG | 0.483006 | 5.1:+30783628 | None:intergenic |
TTCAAAATTTGGAGTTGATG+AGG | 0.486316 | 5.1:-30784972 | MS.gene77442:CDS |
AAAAGTGAAGAGGAATTGAA+TGG | 0.487614 | 5.1:-30784845 | MS.gene77442:CDS |
AATGAGAATGTAAATGAAGA+TGG | 0.489169 | 5.1:-30785811 | MS.gene77442:CDS |
TTCAAAACCATGTTCTTCAA+AGG | 0.489333 | 5.1:+30784895 | None:intergenic |
CATGATCAAGTTGGTCCTCA+TGG | 0.490699 | 5.1:+30781699 | None:intergenic |
GATCAATCTGTTGAAGAAGA+TGG | 0.490914 | 5.1:-30786042 | MS.gene77442:CDS |
GATTATTCCATTTGAGATGG+TGG | 0.492227 | 5.1:+30783776 | None:intergenic |
AAGTGAAAGGATTGTTTCCA+TGG | 0.494280 | 5.1:-30785998 | MS.gene77442:CDS |
GAGCAATTGGTTGCTCAAGT+TGG | 0.497738 | 5.1:-30781677 | MS.gene77442:CDS |
AGAAATGGAACCTCATATGA+AGG | 0.501310 | 5.1:-30784927 | MS.gene77442:CDS |
TCGTACTCAGATTCTTCTTG+AGG | 0.502220 | 5.1:-30786489 | MS.gene77442:intron |
TATAAAGGAATCTTCATTCA+AGG | 0.508594 | 5.1:-30785638 | MS.gene77442:CDS |
ATGGGAACATGAAGAAATAG+TGG | 0.519070 | 5.1:-30784795 | MS.gene77442:CDS |
GAGTCTAAGCTTCATGAAGA+TGG | 0.521287 | 5.1:-30785739 | MS.gene77442:CDS |
TGATTCTTAGATGATAGTAA+AGG | 0.525864 | 5.1:-30782738 | MS.gene77442:intron |
GTCTCTGGTGTTATTGAAGA+TGG | 0.525911 | 5.1:-30785682 | MS.gene77442:CDS |
TGTTGAAGAAGATGGTGGTA+AGG | 0.526614 | 5.1:-30786034 | MS.gene77442:CDS |
AGAGATTATTCCATTTGAGA+TGG | 0.527855 | 5.1:+30783773 | None:intergenic |
CATCTTGGAGGCTACGATGT+AGG | 0.531814 | 5.1:-30776470 | MS.gene77442:CDS |
TAATAGCTGGAACATGAAGC+AGG | 0.539080 | 5.1:+30783439 | None:intergenic |
GTTCTCACCTAATGCATGCA+TGG | 0.541009 | 5.1:+30784526 | None:intergenic |
GTCAATAATTTGCTATTGCT+AGG | 0.541131 | 5.1:+30776420 | None:intergenic |
AAGAAACAGAGCAAGAAACA+GGG | 0.542577 | 5.1:-30785519 | MS.gene77442:CDS |
AAAATGAAGGAGTAAGTGAA+AGG | 0.543824 | 5.1:-30786011 | MS.gene77442:CDS |
GTATTGAAATTAATTTAAGA+GGG | 0.545143 | 5.1:+30783805 | None:intergenic |
TGGACAAATTTGCCTCTCAT+GGG | 0.546353 | 5.1:-30783655 | MS.gene77442:CDS |
AGAGCTATGCAGAGAAAATG+AGG | 0.547615 | 5.1:-30784574 | MS.gene77442:CDS |
TGGTCATGATAATATGAAGA+TGG | 0.547752 | 5.1:-30785911 | MS.gene77442:CDS |
TCCACATCGCTTTGAGAGCG+AGG | 0.553578 | 5.1:-30785242 | MS.gene77442:CDS |
AAGTTGATGATGAGAGATGA+AGG | 0.557662 | 5.1:-30785040 | MS.gene77442:CDS |
GATGGTGGTAAGGAAAATGA+AGG | 0.559633 | 5.1:-30786024 | MS.gene77442:CDS |
TTGAAAACCTTTGAAGAACA+TGG | 0.559839 | 5.1:-30784902 | MS.gene77442:CDS |
ATCATTTGGATCATTCTCCA+TGG | 0.561050 | 5.1:+30785981 | None:intergenic |
CCAATTGCTCATGATCAAGT+TGG | 0.562526 | 5.1:+30781690 | None:intergenic |
AGGTATGAAGAAAAGTGAAG+AGG | 0.564125 | 5.1:-30784855 | MS.gene77442:CDS |
CCATCACATTCACTTGGTGA+TGG | 0.566199 | 5.1:-30786330 | MS.gene77442:CDS |
TCAGAATCATCTAGTTCAAG+TGG | 0.570109 | 5.1:-30785145 | MS.gene77442:CDS |
AATTCACCATCACATTCACT+TGG | 0.572296 | 5.1:-30786336 | MS.gene77442:CDS |
TGGATTGCGATTGATTTCAA+GGG | 0.573227 | 5.1:-30781657 | MS.gene77442:CDS |
CTAGAAGGTTTGCAATTGCA+GGG | 0.575689 | 5.1:+30782571 | None:intergenic |
AGATGAAGGAATAGAAGGTG+TGG | 0.577847 | 5.1:-30785026 | MS.gene77442:CDS |
GAGATTAGCAAGAAAATAGG+TGG | 0.581466 | 5.1:-30785595 | MS.gene77442:CDS |
TGCAATTGCAAACCTTCTAG+TGG | 0.582906 | 5.1:-30782568 | MS.gene77442:CDS |
GAAATGGAACCTCATATGAA+GGG | 0.582942 | 5.1:-30784926 | MS.gene77442:CDS |
ATCTTCATTCAAGGATGATG+AGG | 0.583870 | 5.1:-30785629 | MS.gene77442:CDS |
TCTCATGGGAAATCCTATGT+TGG | 0.587870 | 5.1:-30783641 | MS.gene77442:CDS |
ATTCTTAGATGATAGTAAAG+GGG | 0.591259 | 5.1:-30782736 | MS.gene77442:intron |
GGGATCCAATTGCAAGTGGA+AGG | 0.591596 | 5.1:-30782707 | MS.gene77442:CDS |
AACATAGGATTTCCCATGAG+AGG | 0.593117 | 5.1:+30783643 | None:intergenic |
TGTGAAAACAGAGATATATG+TGG | 0.593704 | 5.1:-30786130 | MS.gene77442:CDS |
ATTGCGATTGATTTCAAGGG+TGG | 0.601997 | 5.1:-30781654 | MS.gene77442:intron |
ACCTCGCTCTCAAAGCGATG+TGG | 0.608095 | 5.1:+30785241 | None:intergenic |
TTCTTAGATGATAGTAAAGG+GGG | 0.611926 | 5.1:-30782735 | MS.gene77442:intron |
GAAGGCTCTGAATTTAAGGA+TGG | 0.612417 | 5.1:-30785763 | MS.gene77442:CDS |
GAGTGTGAAATTCATGAAGA+GGG | 0.613861 | 5.1:-30786084 | MS.gene77442:CDS |
AGCCATTTCAAGGTGGACCA+AGG | 0.623624 | 5.1:-30783500 | MS.gene77442:CDS |
CTTGGAGGCTACGATGTAGG+AGG | 0.626364 | 5.1:-30776467 | MS.gene77442:CDS |
GAAGTATTCATACCTACTAG+TGG | 0.638361 | 5.1:+30785459 | None:intergenic |
CTCAAAGCGATGTGGAACAT+CGG | 0.642227 | 5.1:+30785249 | None:intergenic |
TCTAGTGTTCATGAAGATGG+AGG | 0.644084 | 5.1:-30785871 | MS.gene77442:CDS |
CAATCTGTTGAAGAAGATGG+TGG | 0.654536 | 5.1:-30786039 | MS.gene77442:CDS |
TGAGTGTGAAATTCATGAAG+AGG | 0.658954 | 5.1:-30786085 | MS.gene77442:CDS |
GTTGAAACTCACCAGCAACA+TGG | 0.660906 | 5.1:+30783559 | None:intergenic |
AGAAACAGAGCAAGAAACAG+GGG | 0.664775 | 5.1:-30785518 | MS.gene77442:CDS |
TTGAAGAATTCAAGACAAGG+AGG | 0.678769 | 5.1:-30784755 | MS.gene77442:CDS |
CCATCACCAAGTGAATGTGA+TGG | 0.687180 | 5.1:+30786330 | None:intergenic |
GAGAATGAGCCATTTCAAGG+TGG | 0.715727 | 5.1:-30783507 | MS.gene77442:CDS |
GAATTGAAGAATTCAAGACA+AGG | 0.716020 | 5.1:-30784758 | MS.gene77442:CDS |
GAAGTTCCAAAAGCACCATG+AGG | 0.720836 | 5.1:-30781714 | MS.gene77442:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 30776421 | 30786575 | 30776421 | ID=MS.gene77442 |
chr5.1 | mRNA | 30776421 | 30786575 | 30776421 | ID=MS.gene77442.t1;Parent=MS.gene77442 |
chr5.1 | exon | 30786490 | 30786575 | 30786490 | ID=MS.gene77442.t1.exon1;Parent=MS.gene77442.t1 |
chr5.1 | CDS | 30786490 | 30786575 | 30786490 | ID=cds.MS.gene77442.t1;Parent=MS.gene77442.t1 |
chr5.1 | exon | 30784534 | 30786395 | 30784534 | ID=MS.gene77442.t1.exon2;Parent=MS.gene77442.t1 |
chr5.1 | CDS | 30784534 | 30786395 | 30784534 | ID=cds.MS.gene77442.t1;Parent=MS.gene77442.t1 |
chr5.1 | exon | 30783436 | 30783846 | 30783436 | ID=MS.gene77442.t1.exon3;Parent=MS.gene77442.t1 |
chr5.1 | CDS | 30783436 | 30783846 | 30783436 | ID=cds.MS.gene77442.t1;Parent=MS.gene77442.t1 |
chr5.1 | exon | 30782545 | 30782750 | 30782545 | ID=MS.gene77442.t1.exon4;Parent=MS.gene77442.t1 |
chr5.1 | CDS | 30782545 | 30782750 | 30782545 | ID=cds.MS.gene77442.t1;Parent=MS.gene77442.t1 |
chr5.1 | exon | 30781655 | 30781786 | 30781655 | ID=MS.gene77442.t1.exon5;Parent=MS.gene77442.t1 |
chr5.1 | CDS | 30781655 | 30781786 | 30781655 | ID=cds.MS.gene77442.t1;Parent=MS.gene77442.t1 |
chr5.1 | exon | 30776421 | 30776528 | 30776421 | ID=MS.gene77442.t1.exon6;Parent=MS.gene77442.t1 |
chr5.1 | CDS | 30776421 | 30776528 | 30776421 | ID=cds.MS.gene77442.t1;Parent=MS.gene77442.t1 |
Gene Sequence |
Protein sequence |