Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049786.t1 | XP_013455932.1 | 99.6 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 1.70E-31 | 146.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049786.t1 | Q9FFB3 | 75.5 | 229 | 54 | 1 | 1 | 227 | 1 | 229 | 2.1e-22 | 107.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049786.t1 | I3S694 | 99.6 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 1.2e-31 | 146.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene049786 | 0.810862 | 9.33E-51 | -1.69E-46 |
MS.gene049166 | MS.gene049786 | 0.816527 | 5.28E-52 | -1.69E-46 |
MS.gene049786 | MS.gene050654 | 0.810366 | 1.19E-50 | -1.69E-46 |
MS.gene049786 | MS.gene051490 | 0.810136 | 1.34E-50 | -1.69E-46 |
MS.gene049786 | MS.gene051676 | 0.800688 | 1.28E-48 | -1.69E-46 |
MS.gene049786 | MS.gene052434 | 0.820029 | 8.51E-53 | -1.69E-46 |
MS.gene049786 | MS.gene05458 | 0.804661 | 1.94E-49 | -1.69E-46 |
MS.gene049786 | MS.gene054943 | 0.801156 | 1.03E-48 | -1.69E-46 |
MS.gene049786 | MS.gene05517 | 0.808174 | 3.53E-50 | -1.69E-46 |
MS.gene049786 | MS.gene055313 | 0.801866 | 7.36E-49 | -1.69E-46 |
MS.gene049786 | MS.gene055513 | 0.819376 | 1.20E-52 | -1.69E-46 |
MS.gene049786 | MS.gene055603 | 0.814819 | 1.27E-51 | -1.69E-46 |
MS.gene049786 | MS.gene056181 | 0.823387 | 1.42E-53 | -1.69E-46 |
MS.gene049786 | MS.gene056638 | 0.828108 | 1.08E-54 | -1.69E-46 |
MS.gene049786 | MS.gene056901 | 0.813649 | 2.30E-51 | -1.69E-46 |
MS.gene049786 | MS.gene058081 | 0.809124 | 2.21E-50 | -1.69E-46 |
MS.gene049786 | MS.gene06010 | 0.811104 | 8.27E-51 | -1.69E-46 |
MS.gene049786 | MS.gene06011 | 0.801104 | 1.05E-48 | -1.69E-46 |
MS.gene049786 | MS.gene060296 | 0.802829 | 4.66E-49 | -1.69E-46 |
MS.gene049786 | MS.gene060637 | 0.800416 | 1.46E-48 | -1.69E-46 |
MS.gene049786 | MS.gene060869 | 0.816175 | 6.33E-52 | -1.69E-46 |
MS.gene049786 | MS.gene060870 | 0.838831 | 2.28E-57 | -1.69E-46 |
MS.gene049786 | MS.gene06133 | 0.812059 | 5.13E-51 | -1.69E-46 |
MS.gene049786 | MS.gene061958 | 0.833763 | 4.42E-56 | -1.69E-46 |
MS.gene049786 | MS.gene062292 | 0.824084 | 9.78E-54 | -1.69E-46 |
MS.gene049786 | MS.gene062321 | 0.809519 | 1.82E-50 | -1.69E-46 |
MS.gene049786 | MS.gene06324 | 0.800013 | 1.76E-48 | -1.69E-46 |
MS.gene049786 | MS.gene064717 | 0.833621 | 4.80E-56 | -1.69E-46 |
MS.gene049786 | MS.gene065072 | 0.807171 | 5.76E-50 | -1.69E-46 |
MS.gene049786 | MS.gene065504 | 0.829818 | 4.16E-55 | -1.69E-46 |
MS.gene049786 | MS.gene066405 | 0.824877 | 6.36E-54 | -1.69E-46 |
MS.gene049786 | MS.gene067043 | 0.820518 | 6.58E-53 | -1.69E-46 |
MS.gene049786 | MS.gene067300 | 0.801837 | 7.46E-49 | -1.69E-46 |
MS.gene049786 | MS.gene067583 | 0.81103 | 8.58E-51 | -1.69E-46 |
MS.gene049786 | MS.gene067812 | 0.807595 | 4.68E-50 | -1.69E-46 |
MS.gene049786 | MS.gene069827 | 0.808206 | 3.47E-50 | -1.69E-46 |
MS.gene049786 | MS.gene070671 | 0.815896 | 7.31E-52 | -1.69E-46 |
MS.gene049786 | MS.gene07088 | 0.827579 | 1.45E-54 | -1.69E-46 |
MS.gene049786 | MS.gene071343 | 0.800073 | 1.71E-48 | -1.69E-46 |
MS.gene049786 | MS.gene072116 | 0.815073 | 1.11E-51 | -1.69E-46 |
MS.gene049786 | MS.gene072285 | -0.807765 | 4.31E-50 | -1.69E-46 |
MS.gene049786 | MS.gene072601 | 0.801187 | 1.01E-48 | -1.69E-46 |
MS.gene049786 | MS.gene07339 | 0.831522 | 1.59E-55 | -1.69E-46 |
MS.gene049786 | MS.gene074040 | 0.805615 | 1.23E-49 | -1.69E-46 |
MS.gene049786 | MS.gene07608 | 0.813199 | 2.89E-51 | -1.69E-46 |
MS.gene049786 | MS.gene08202 | 0.806666 | 7.36E-50 | -1.69E-46 |
MS.gene049786 | MS.gene09111 | 0.978806 | 1.33E-146 | -1.69E-46 |
MS.gene049786 | MS.gene09166 | 0.821359 | 4.21E-53 | -1.69E-46 |
MS.gene049786 | MS.gene20621 | 0.815941 | 7.14E-52 | -1.69E-46 |
MS.gene049786 | MS.gene20886 | 0.849296 | 3.54E-60 | -1.69E-46 |
MS.gene049786 | MS.gene20985 | 0.810712 | 1.01E-50 | -1.69E-46 |
MS.gene049786 | MS.gene21056 | 0.806013 | 1.01E-49 | -1.69E-46 |
MS.gene049786 | MS.gene21826 | 0.808351 | 3.23E-50 | -1.69E-46 |
MS.gene049786 | MS.gene23513 | 0.81517 | 1.06E-51 | -1.69E-46 |
MS.gene049786 | MS.gene24413 | 0.80712 | 5.90E-50 | -1.69E-46 |
MS.gene049786 | MS.gene25174 | 0.815492 | 8.99E-52 | -1.69E-46 |
MS.gene049786 | MS.gene25942 | 0.805796 | 1.12E-49 | -1.69E-46 |
MS.gene049786 | MS.gene28491 | 0.810325 | 1.22E-50 | -1.69E-46 |
MS.gene049786 | MS.gene30663 | 0.800403 | 1.47E-48 | -1.69E-46 |
MS.gene049786 | MS.gene31625 | 0.832773 | 7.81E-56 | -1.69E-46 |
MS.gene049786 | MS.gene31862 | 0.80789 | 4.05E-50 | -1.69E-46 |
MS.gene049786 | MS.gene32654 | 0.811312 | 7.46E-51 | -1.69E-46 |
MS.gene049786 | MS.gene33135 | 0.823535 | 1.31E-53 | -1.69E-46 |
MS.gene049786 | MS.gene34011 | 0.805473 | 1.31E-49 | -1.69E-46 |
MS.gene049786 | MS.gene34453 | 0.802196 | 6.29E-49 | -1.69E-46 |
MS.gene049786 | MS.gene35764 | 0.819663 | 1.03E-52 | -1.69E-46 |
MS.gene049786 | MS.gene36289 | 0.814699 | 1.35E-51 | -1.69E-46 |
MS.gene049786 | MS.gene36293 | 0.818942 | 1.51E-52 | -1.69E-46 |
MS.gene049786 | MS.gene36325 | 0.810884 | 9.23E-51 | -1.69E-46 |
MS.gene049786 | MS.gene37570 | 0.815919 | 7.22E-52 | -1.69E-46 |
MS.gene049786 | MS.gene37653 | 0.824027 | 1.01E-53 | -1.69E-46 |
MS.gene049786 | MS.gene37877 | 0.814108 | 1.82E-51 | -1.69E-46 |
MS.gene049786 | MS.gene37989 | 0.802458 | 5.56E-49 | -1.69E-46 |
MS.gene049786 | MS.gene38261 | 0.807185 | 5.72E-50 | -1.69E-46 |
MS.gene049786 | MS.gene39407 | 0.800988 | 1.11E-48 | -1.69E-46 |
MS.gene049786 | MS.gene40006 | 0.804789 | 1.82E-49 | -1.69E-46 |
MS.gene049786 | MS.gene40330 | 0.803692 | 3.09E-49 | -1.69E-46 |
MS.gene049786 | MS.gene40510 | 0.80986 | 1.54E-50 | -1.69E-46 |
MS.gene049786 | MS.gene40991 | 0.811544 | 6.64E-51 | -1.69E-46 |
MS.gene049786 | MS.gene41678 | 0.811702 | 6.13E-51 | -1.69E-46 |
MS.gene049786 | MS.gene41729 | 0.819207 | 1.31E-52 | -1.69E-46 |
MS.gene049786 | MS.gene42128 | 0.812407 | 4.31E-51 | -1.69E-46 |
MS.gene049786 | MS.gene42295 | 0.840279 | 9.57E-58 | -1.69E-46 |
MS.gene049786 | MS.gene43202 | 0.8139 | 2.03E-51 | -1.69E-46 |
MS.gene049786 | MS.gene44701 | 0.815266 | 1.01E-51 | -1.69E-46 |
MS.gene049786 | MS.gene45624 | 0.847162 | 1.38E-59 | -1.69E-46 |
MS.gene049786 | MS.gene47311 | 0.803801 | 2.93E-49 | -1.69E-46 |
MS.gene049786 | MS.gene47695 | 0.811924 | 5.49E-51 | -1.69E-46 |
MS.gene049786 | MS.gene49467 | 0.801618 | 8.27E-49 | -1.69E-46 |
MS.gene049786 | MS.gene49816 | 0.806037 | 9.99E-50 | -1.69E-46 |
MS.gene049786 | MS.gene50200 | 0.847462 | 1.14E-59 | -1.69E-46 |
MS.gene049786 | MS.gene50934 | 0.809286 | 2.04E-50 | -1.69E-46 |
MS.gene049786 | MS.gene51221 | 0.804725 | 1.88E-49 | -1.69E-46 |
MS.gene049786 | MS.gene51865 | 0.80592 | 1.06E-49 | -1.69E-46 |
MS.gene049786 | MS.gene54163 | 0.825147 | 5.49E-54 | -1.69E-46 |
MS.gene049786 | MS.gene54280 | 0.821147 | 4.71E-53 | -1.69E-46 |
MS.gene049786 | MS.gene54766 | 0.811032 | 8.57E-51 | -1.69E-46 |
MS.gene049786 | MS.gene56039 | 0.819163 | 1.34E-52 | -1.69E-46 |
MS.gene049786 | MS.gene58579 | 0.800128 | 1.67E-48 | -1.69E-46 |
MS.gene049786 | MS.gene60120 | 0.810604 | 1.06E-50 | -1.69E-46 |
MS.gene049786 | MS.gene60163 | 0.823993 | 1.03E-53 | -1.69E-46 |
MS.gene049786 | MS.gene61257 | 0.809052 | 2.29E-50 | -1.69E-46 |
MS.gene049786 | MS.gene61428 | 0.80011 | 1.68E-48 | -1.69E-46 |
MS.gene049786 | MS.gene61682 | 0.803969 | 2.70E-49 | -1.69E-46 |
MS.gene049786 | MS.gene61989 | 0.802076 | 6.66E-49 | -1.69E-46 |
MS.gene049786 | MS.gene62899 | 0.808691 | 2.73E-50 | -1.69E-46 |
MS.gene049786 | MS.gene63961 | 0.807322 | 5.35E-50 | -1.69E-46 |
MS.gene049786 | MS.gene65046 | 0.80176 | 7.73E-49 | -1.69E-46 |
MS.gene049786 | MS.gene65518 | 0.809009 | 2.34E-50 | -1.69E-46 |
MS.gene049786 | MS.gene65789 | 0.801271 | 9.74E-49 | -1.69E-46 |
MS.gene049786 | MS.gene66049 | 0.817977 | 2.49E-52 | -1.69E-46 |
MS.gene049786 | MS.gene67107 | 0.828437 | 9.00E-55 | -1.69E-46 |
MS.gene049786 | MS.gene67141 | 0.810384 | 1.18E-50 | -1.69E-46 |
MS.gene049786 | MS.gene68188 | 0.820012 | 8.59E-53 | -1.69E-46 |
MS.gene049786 | MS.gene68264 | 0.80354 | 3.32E-49 | -1.69E-46 |
MS.gene049786 | MS.gene69148 | 0.809131 | 2.20E-50 | -1.69E-46 |
MS.gene049786 | MS.gene69442 | 0.847361 | 1.21E-59 | -1.69E-46 |
MS.gene049786 | MS.gene69692 | 0.807258 | 5.52E-50 | -1.69E-46 |
MS.gene049786 | MS.gene70282 | 0.809331 | 2.00E-50 | -1.69E-46 |
MS.gene049786 | MS.gene70314 | 0.800488 | 1.41E-48 | -1.69E-46 |
MS.gene049786 | MS.gene71879 | 0.820774 | 5.74E-53 | -1.69E-46 |
MS.gene049786 | MS.gene72621 | 0.81927 | 1.27E-52 | -1.69E-46 |
MS.gene049786 | MS.gene73245 | 0.823606 | 1.27E-53 | -1.69E-46 |
MS.gene049786 | MS.gene73462 | 0.807034 | 6.16E-50 | -1.69E-46 |
MS.gene049786 | MS.gene73870 | 0.805311 | 1.42E-49 | -1.69E-46 |
MS.gene049786 | MS.gene74510 | 0.809415 | 1.91E-50 | -1.69E-46 |
MS.gene049786 | MS.gene74537 | 0.802581 | 5.24E-49 | -1.69E-46 |
MS.gene049786 | MS.gene74900 | 0.824496 | 7.82E-54 | -1.69E-46 |
MS.gene049786 | MS.gene75229 | 0.809792 | 1.59E-50 | -1.69E-46 |
MS.gene049786 | MS.gene75412 | 0.837879 | 4.01E-57 | -1.69E-46 |
MS.gene049786 | MS.gene75413 | 0.800838 | 1.19E-48 | -1.69E-46 |
MS.gene049786 | MS.gene75564 | 0.822428 | 2.38E-53 | -1.69E-46 |
MS.gene049786 | MS.gene75781 | 0.820481 | 6.71E-53 | -1.69E-46 |
MS.gene049786 | MS.gene76248 | 0.812235 | 4.70E-51 | -1.69E-46 |
MS.gene049786 | MS.gene77080 | 0.804915 | 1.72E-49 | -1.69E-46 |
MS.gene049786 | MS.gene77208 | 0.82384 | 1.12E-53 | -1.69E-46 |
MS.gene049786 | MS.gene77442 | 0.810581 | 1.07E-50 | -1.69E-46 |
MS.gene049786 | MS.gene77649 | 0.810322 | 1.22E-50 | -1.69E-46 |
MS.gene049786 | MS.gene78230 | 0.81726 | 3.62E-52 | -1.69E-46 |
MS.gene049786 | MS.gene79200 | 0.811162 | 8.04E-51 | -1.69E-46 |
MS.gene049786 | MS.gene81285 | 0.808409 | 3.14E-50 | -1.69E-46 |
MS.gene049786 | MS.gene81831 | 0.822986 | 1.77E-53 | -1.69E-46 |
MS.gene049786 | MS.gene82408 | 0.830514 | 2.81E-55 | -1.69E-46 |
MS.gene049786 | MS.gene84498 | 0.802064 | 6.70E-49 | -1.69E-46 |
MS.gene049786 | MS.gene87924 | 0.810302 | 1.23E-50 | -1.69E-46 |
MS.gene049786 | MS.gene89104 | 0.80722 | 5.62E-50 | -1.69E-46 |
MS.gene049786 | MS.gene90097 | 0.804064 | 2.58E-49 | -1.69E-46 |
MS.gene049786 | MS.gene91523 | 0.805785 | 1.13E-49 | -1.69E-46 |
MS.gene049786 | MS.gene91525 | 0.80119 | 1.01E-48 | -1.69E-46 |
MS.gene049786 | MS.gene92390 | 0.819516 | 1.11E-52 | -1.69E-46 |
MS.gene049786 | MS.gene93204 | 0.802001 | 6.90E-49 | -1.69E-46 |
MS.gene049786 | MS.gene93288 | -0.806273 | 8.91E-50 | -1.69E-46 |
MS.gene049786 | MS.gene93985 | 0.819684 | 1.02E-52 | -1.69E-46 |
MS.gene049786 | MS.gene94183 | 0.801112 | 1.05E-48 | -1.69E-46 |
MS.gene049786 | MS.gene97030 | 0.810189 | 1.30E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene049786 | MS.gene75244 | PPI |
MS.gene033909 | MS.gene049786 | PPI |
MS.gene98009 | MS.gene049786 | PPI |
MS.gene049786 | MS.gene025196 | PPI |
MS.gene049786 | MS.gene75911 | PPI |
MS.gene96973 | MS.gene049786 | PPI |
MS.gene018678 | MS.gene049786 | PPI |
MS.gene020387 | MS.gene049786 | PPI |
MS.gene051184 | MS.gene049786 | PPI |
MS.gene23464 | MS.gene049786 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049786.t1 | MTR_4g057565 | 99.559 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 1.44e-162 | 448 |
MS.gene049786.t1 | MTR_1g069715 | 31.892 | 185 | 126 | 0 | 1 | 185 | 462 | 646 | 1.09e-22 | 96.3 |
MS.gene049786.t1 | MTR_2g047875 | 29.730 | 222 | 148 | 1 | 5 | 226 | 1 | 214 | 6.29e-21 | 87.4 |
MS.gene049786.t1 | MTR_7g097170 | 32.018 | 228 | 133 | 4 | 5 | 227 | 1 | 211 | 1.74e-18 | 80.9 |
MS.gene049786.t1 | MTR_2g041190 | 28.634 | 227 | 146 | 5 | 7 | 226 | 4 | 221 | 6.65e-15 | 71.2 |
MS.gene049786.t1 | MTR_8g019700 | 27.684 | 177 | 126 | 2 | 7 | 182 | 4 | 179 | 1.81e-14 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049786.t1 | AT5G22950 | 82.969 | 229 | 37 | 1 | 1 | 227 | 1 | 229 | 4.15e-126 | 356 |
MS.gene049786.t1 | AT3G45000 | 72.362 | 199 | 53 | 1 | 31 | 227 | 2 | 200 | 1.00e-87 | 258 |
MS.gene049786.t1 | AT3G45000 | 76.259 | 139 | 31 | 1 | 91 | 227 | 1 | 139 | 6.33e-59 | 182 |
MS.gene049786.t1 | AT1G03950 | 31.532 | 222 | 140 | 3 | 5 | 226 | 1 | 210 | 1.02e-28 | 107 |
MS.gene049786.t1 | AT5G44560 | 29.834 | 181 | 127 | 0 | 5 | 185 | 1 | 181 | 9.15e-21 | 87.0 |
MS.gene049786.t1 | AT5G44560 | 29.213 | 178 | 126 | 0 | 5 | 182 | 1 | 178 | 6.07e-20 | 84.3 |
MS.gene049786.t1 | AT2G06530 | 29.362 | 235 | 142 | 7 | 4 | 226 | 1 | 223 | 6.77e-17 | 77.0 |
MS.gene049786.t1 | AT5G44560 | 28.662 | 157 | 112 | 0 | 29 | 185 | 5 | 161 | 1.16e-14 | 70.5 |
MS.gene049786.t1 | AT2G06530 | 28.638 | 213 | 129 | 6 | 25 | 226 | 2 | 202 | 9.00e-13 | 65.5 |
MS.gene049786.t1 | AT5G44560 | 30.534 | 131 | 91 | 0 | 5 | 135 | 1 | 131 | 1.02e-12 | 64.3 |
Find 42 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAATAACTGTTGCGGATT+TGG | 0.162141 | 4.2:+46185017 | None:intergenic |
AAGAAGAAATGGAAGAAATT+AGG | 0.185877 | 4.2:-46180559 | MS.gene049786:CDS |
TGCATAGCAACAGCCATTTC+AGG | 0.256684 | 4.2:+46181007 | None:intergenic |
AACTGTTGCGGATTTGGTTT+CGG | 0.312520 | 4.2:+46185023 | None:intergenic |
TAACCGTCTGCATGAAAATA+AGG | 0.340473 | 4.2:-46183629 | MS.gene049786:CDS |
CGCAACAGTTATTGAGAGAT+TGG | 0.341374 | 4.2:-46185010 | MS.gene049786:CDS |
TGACCTGACTTTAGCGAGTC+TGG | 0.371271 | 4.2:+46180535 | None:intergenic |
AGAAGAAATGGAAGAAATTA+GGG | 0.376649 | 4.2:-46180558 | MS.gene049786:CDS |
CTACAGAACTTGTGAGATCT+AGG | 0.401420 | 4.2:-46183660 | MS.gene049786:CDS |
CCTCATGAAGGCTCCTGAAA+TGG | 0.421101 | 4.2:-46181020 | MS.gene049786:CDS |
TCCTCTGCGGCACTTTGAGC+AGG | 0.453503 | 4.2:+46180699 | None:intergenic |
TTCAGCAATTGCTCGTACTG+TGG | 0.454062 | 4.2:-46181086 | MS.gene049786:intron |
TGATTTAGATATTCAGAGAG+AGG | 0.474813 | 4.2:-46184845 | MS.gene049786:intron |
TGTTGATGATGAAGAAGAAA+TGG | 0.478357 | 4.2:-46180570 | MS.gene049786:CDS |
TTCTTCATCATCAACACCCT+CGG | 0.485224 | 4.2:+46180577 | None:intergenic |
GTTTCAGGCAGGAGTAATTG+AGG | 0.506660 | 4.2:-46180871 | MS.gene049786:intron |
GGGCCAGACTCGCTAAAGTC+AGG | 0.512607 | 4.2:-46180538 | MS.gene049786:CDS |
CTATTAAAGAAGCTGCTAAG+AGG | 0.518339 | 4.2:-46184804 | MS.gene049786:CDS |
TCAGCAATTGCTCGTACTGT+GGG | 0.530452 | 4.2:-46181085 | MS.gene049786:intron |
AACATTGAACGACAAATTCG+CGG | 0.539995 | 4.2:-46184960 | MS.gene049786:intron |
TGAAGCTGTGAGGAAACAAA+AGG | 0.551851 | 4.2:-46180730 | MS.gene049786:CDS |
CAATCTCTCAATAACTGTTG+CGG | 0.557549 | 4.2:+46185011 | None:intergenic |
TGCTCAAAGTGCCGCAGAGG+AGG | 0.582103 | 4.2:-46180697 | MS.gene049786:intron |
AAAGTCTTAACTGAATTAGC+CGG | 0.583548 | 4.2:-46180774 | MS.gene049786:CDS |
AACTCAATATCAATGCACCT+TGG | 0.594406 | 4.2:-46183598 | MS.gene049786:CDS |
ACCTGCTCAAAGTGCCGCAG+AGG | 0.595296 | 4.2:-46180700 | MS.gene049786:CDS |
TGACTCAGCATTAGATTCTG+AGG | 0.600712 | 4.2:-46180829 | MS.gene049786:CDS |
CAGGAAGATGCTATAGCCGA+GGG | 0.609938 | 4.2:-46180593 | MS.gene049786:CDS |
AAGTTGTGCGGCTGTCTCAC+CGG | 0.610913 | 4.2:+46180755 | None:intergenic |
GCTTGTCAATAACCTCATGA+AGG | 0.612171 | 4.2:-46181032 | MS.gene049786:CDS |
ACCTACCAACACTTTCTCCA+AGG | 0.615558 | 4.2:+46183581 | None:intergenic |
CCATTTCAGGAGCCTTCATG+AGG | 0.615981 | 4.2:+46181020 | None:intergenic |
GAATGACATTGGTTCTGCAA+AGG | 0.618815 | 4.2:-46184782 | MS.gene049786:intron |
GCAGGAAGATGCTATAGCCG+AGG | 0.620355 | 4.2:-46180594 | MS.gene049786:intron |
ATGCACCTTGGAGAAAGTGT+TGG | 0.628455 | 4.2:-46183586 | MS.gene049786:intron |
ATTGACAAGCTTCATAACCT+CGG | 0.641959 | 4.2:+46181045 | None:intergenic |
CACAACTTCCTGAAGCTGTG+AGG | 0.670413 | 4.2:-46180740 | MS.gene049786:CDS |
GCTGCTAAGAGGAATGACAT+TGG | 0.677222 | 4.2:-46184793 | MS.gene049786:CDS |
CACAGCTTCAGGAAGTTGTG+CGG | 0.680019 | 4.2:+46180743 | None:intergenic |
ACATCTATCAAAGAGTGCCG+AGG | 0.689000 | 4.2:-46181062 | MS.gene049786:CDS |
GTTCAGCAAAGAAATGACCA+AGG | 0.706921 | 4.2:-46180981 | MS.gene049786:intron |
AACTGCACGTACCTCCTCTG+CGG | 0.719337 | 4.2:+46180686 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTATTTTTTTTTATTTT+GGG | - | chr4.2:46181401-46181420 | MS.gene049786:intron | 0.0% |
!!! | TTTTTTATTTTTTTTTATTT+TGG | - | chr4.2:46181400-46181419 | MS.gene049786:intron | 0.0% |
!!! | ATATTTTTTAATCTTTACAA+TGG | - | chr4.2:46183434-46183453 | MS.gene049786:intron | 10.0% |
!! | AAAAAAAACCTAAGTTAAAT+AGG | - | chr4.2:46182390-46182409 | MS.gene049786:intron | 15.0% |
!! | CAAAAAACTATAGATAAAAT+CGG | + | chr4.2:46182691-46182710 | None:intergenic | 15.0% |
!!! | TTTTATTCTTAAATTACTAC+AGG | + | chr4.2:46180886-46180905 | None:intergenic | 15.0% |
!!! | TTTTTAATTAAGAGTATGTT+TGG | + | chr4.2:46182257-46182276 | None:intergenic | 15.0% |
!! | AAAATCTAATCTCCTTATTA+TGG | - | chr4.2:46181874-46181893 | MS.gene049786:intron | 20.0% |
!! | AAATTTAGTGATTAATGAGT+TGG | - | chr4.2:46181163-46181182 | MS.gene049786:intron | 20.0% |
!! | AAGATAAAACTTCATGAAAT+TGG | - | chr4.2:46183902-46183921 | MS.gene049786:intron | 20.0% |
!! | ATGGTTTATGATAAAACATA+GGG | - | chr4.2:46181194-46181213 | MS.gene049786:intron | 20.0% |
!! | ATTGAACAAATACCATAATA+AGG | + | chr4.2:46181889-46181908 | None:intergenic | 20.0% |
!! | CATAATATAGTCATTGTATA+AGG | + | chr4.2:46184282-46184301 | None:intergenic | 20.0% |
!! | GTTAATTGCATGATAATTAT+TGG | - | chr4.2:46184677-46184696 | MS.gene049786:intron | 20.0% |
!! | GTTTCTCTTAAAAAATTTCT+AGG | + | chr4.2:46181134-46181153 | None:intergenic | 20.0% |
!! | TACATGTGTAAATATATTCT+TGG | - | chr4.2:46184310-46184329 | MS.gene049786:intron | 20.0% |
!! | TATGGTTTATGATAAAACAT+AGG | - | chr4.2:46181193-46181212 | MS.gene049786:intron | 20.0% |
!!! | AGTGTATATACAAGTTTTTA+TGG | - | chr4.2:46181588-46181607 | MS.gene049786:intron | 20.0% |
!!! | CATAATTGTTTCATTTTAGA+TGG | - | chr4.2:46183357-46183376 | MS.gene049786:intron | 20.0% |
!!! | GTTTTATCATAAACCATATT+TGG | + | chr4.2:46181191-46181210 | None:intergenic | 20.0% |
!!! | TAAGAATAAAATTAGCTTAG+TGG | - | chr4.2:46180895-46180914 | MS.gene049786:intron | 20.0% |
!!! | TATGGTGTTTTACAATTATA+AGG | - | chr4.2:46183539-46183558 | MS.gene049786:intron | 20.0% |
!!! | TTTCTTTTGAGAAAATAAAG+CGG | - | chr4.2:46183393-46183412 | MS.gene049786:intron | 20.0% |
!!! | TTTTTTAATCTTTACAATGG+CGG | - | chr4.2:46183437-46183456 | MS.gene049786:intron | 20.0% |
! | AAGAAGAAATGGAAGAAATT+AGG | - | chr4.2:46185023-46185042 | MS.gene049786:CDS | 25.0% |
! | AATGTTCGATAGAATAAAGT+AGG | - | chr4.2:46181834-46181853 | MS.gene049786:intron | 25.0% |
! | AGAAGAAATGGAAGAAATTA+GGG | - | chr4.2:46185024-46185043 | MS.gene049786:CDS | 25.0% |
! | AGAAGAATCAAGTATCAATT+AGG | + | chr4.2:46180677-46180696 | None:intergenic | 25.0% |
! | ATGGTATTTGTTCAATTTAC+AGG | - | chr4.2:46181893-46181912 | MS.gene049786:intron | 25.0% |
! | GAAGAATCAAGTATCAATTA+GGG | + | chr4.2:46180676-46180695 | None:intergenic | 25.0% |
! | TCTTATCTCAAGCATTTATT+TGG | - | chr4.2:46184256-46184275 | MS.gene049786:intron | 25.0% |
! | TGATTATTTGTGGTTATGAT+TGG | - | chr4.2:46180696-46180715 | MS.gene049786:intron | 25.0% |
! | TTGATTCTTCTGATTATTTG+TGG | - | chr4.2:46180686-46180705 | MS.gene049786:intron | 25.0% |
!! | CAAGTTTACCTATTTAACTT+AGG | + | chr4.2:46182401-46182420 | None:intergenic | 25.0% |
!! | TAAGTGTGATTTTCATACAA+AGG | + | chr4.2:46183874-46183893 | None:intergenic | 25.0% |
!! | TAGATTTTGCAAAATCACAA+TGG | + | chr4.2:46182108-46182127 | None:intergenic | 25.0% |
!! | TCATTGGAAATTCCTAATTT+TGG | - | chr4.2:46184466-46184485 | MS.gene049786:intron | 25.0% |
!! | TGATGATCAAATGTTTGTTA+TGG | - | chr4.2:46182440-46182459 | MS.gene049786:intron | 25.0% |
!! | TGATTTTCATACAAAGGATT+AGG | + | chr4.2:46183868-46183887 | None:intergenic | 25.0% |
!! | TTGATAATAGAACTGTTCAT+TGG | - | chr4.2:46184450-46184469 | MS.gene049786:intron | 25.0% |
!!! | ATGATCAAATGTTTGTTATG+GGG | - | chr4.2:46182442-46182461 | MS.gene049786:intron | 25.0% |
!!! | CATTTTTAGGTTTTACTTTG+GGG | - | chr4.2:46184119-46184138 | MS.gene049786:intron | 25.0% |
!!! | CTATAGTTTTTTGATGTTGA+GGG | - | chr4.2:46182698-46182717 | MS.gene049786:intron | 25.0% |
!!! | GATGATCAAATGTTTGTTAT+GGG | - | chr4.2:46182441-46182460 | MS.gene049786:intron | 25.0% |
!!! | GCATTTTTAGGTTTTACTTT+GGG | - | chr4.2:46184118-46184137 | MS.gene049786:intron | 25.0% |
!!! | GTTTTAAGAGAGATCAAAAA+TGG | + | chr4.2:46180654-46180673 | None:intergenic | 25.0% |
!!! | TACGAATTTATGTGTTTTTG+AGG | - | chr4.2:46182485-46182504 | MS.gene049786:intron | 25.0% |
!!! | TCTATAGTTTTTTGATGTTG+AGG | - | chr4.2:46182697-46182716 | MS.gene049786:intron | 25.0% |
!!! | TGCATTTTTAGGTTTTACTT+TGG | - | chr4.2:46184117-46184136 | MS.gene049786:intron | 25.0% |
!!! | TTCATAACCAATGCTATTTT+TGG | - | chr4.2:46181764-46181783 | MS.gene049786:intron | 25.0% |
AAAGTCTTAACTGAATTAGC+CGG | - | chr4.2:46184808-46184827 | MS.gene049786:CDS | 30.0% | |
AAATTAAAACAGGAAGAGAG+GGG | - | chr4.2:46184182-46184201 | MS.gene049786:intron | 30.0% | |
AATTAACTTCTATGACTACG+GGG | + | chr4.2:46184664-46184683 | None:intergenic | 30.0% | |
ACTTATTCCACTTAGTTAAC+TGG | + | chr4.2:46182364-46182383 | None:intergenic | 30.0% | |
AGCAACAATTATCATACAAC+TGG | + | chr4.2:46182308-46182327 | None:intergenic | 30.0% | |
AGCCAAATAACAAACTTAAC+AGG | - | chr4.2:46183664-46183683 | MS.gene049786:CDS | 30.0% | |
AGTAAGGAGTTTAGATTAGA+TGG | - | chr4.2:46181076-46181095 | MS.gene049786:CDS | 30.0% | |
AGTTCAATTTCCTGTTAACA+AGG | - | chr4.2:46184915-46184934 | MS.gene049786:intron | 30.0% | |
CAAATAACAAACTTAACAGG+AGG | - | chr4.2:46183667-46183686 | MS.gene049786:CDS | 30.0% | |
CAAATTAAAACAGGAAGAGA+GGG | - | chr4.2:46184181-46184200 | MS.gene049786:intron | 30.0% | |
CAATTAACTTCTATGACTAC+GGG | + | chr4.2:46184665-46184684 | None:intergenic | 30.0% | |
CTGATATCAAGAAAGAGAAA+AGG | + | chr4.2:46183830-46183849 | None:intergenic | 30.0% | |
GAATAAAATTCAGACTTGCA+AGG | + | chr4.2:46183095-46183114 | None:intergenic | 30.0% | |
GCAATTAACTTCTATGACTA+CGG | + | chr4.2:46184666-46184685 | None:intergenic | 30.0% | |
GTACAAACCAAAAATAGCAT+TGG | + | chr4.2:46181774-46181793 | None:intergenic | 30.0% | |
TAGTCATCTTGAGATATTTG+AGG | - | chr4.2:46184417-46184436 | MS.gene049786:intron | 30.0% | |
TATCTTAACATGCTATAGCT+AGG | - | chr4.2:46182794-46182813 | MS.gene049786:intron | 30.0% | |
TGATTTAGATATTCAGAGAG+AGG | - | chr4.2:46180737-46180756 | MS.gene049786:CDS | 30.0% | |
TGGAATGCATTATTATTTGC+AGG | - | chr4.2:46184970-46184989 | MS.gene049786:CDS | 30.0% | |
! | AAGTCTGAATTTTATTCACG+AGG | - | chr4.2:46183098-46183117 | MS.gene049786:intron | 30.0% |
! | ACTTATTCTCTTATTGACTG+TGG | + | chr4.2:46183621-46183640 | None:intergenic | 30.0% |
! | AGAAAAAGAGAAAGCTTGTT+AGG | - | chr4.2:46183046-46183065 | MS.gene049786:intron | 30.0% |
! | GACATGTAGATTTTGTAGTA+AGG | - | chr4.2:46181060-46181079 | MS.gene049786:CDS | 30.0% |
! | GGGGATAAAATTTTACTAAC+CGG | - | chr4.2:46184138-46184157 | MS.gene049786:intron | 30.0% |
! | TAATGAGTTGGATCCAAATA+TGG | - | chr4.2:46181175-46181194 | MS.gene049786:intron | 30.0% |
! | TCATTCTATGGTGTTAATCT+TGG | + | chr4.2:46183501-46183520 | None:intergenic | 30.0% |
! | TCTTGAGATATTTGAGGTAT+TGG | - | chr4.2:46184423-46184442 | MS.gene049786:intron | 30.0% |
! | TTCATGAAATTGGAAGTATG+TGG | - | chr4.2:46183912-46183931 | MS.gene049786:intron | 30.0% |
!! | CTCCTGTTAAGTTTGTTATT+TGG | + | chr4.2:46183669-46183688 | None:intergenic | 30.0% |
!! | TGTTGATGATGAAGAAGAAA+TGG | - | chr4.2:46185012-46185031 | MS.gene049786:CDS | 30.0% |
!!! | ATGCTATTTTTGGTTTGTAC+TGG | - | chr4.2:46181774-46181793 | MS.gene049786:intron | 30.0% |
!!! | TTATGTGTTTTTGAGGTTGA+GGG | - | chr4.2:46182492-46182511 | MS.gene049786:intron | 30.0% |
!!! | TTTATGTGTTTTTGAGGTTG+AGG | - | chr4.2:46182491-46182510 | MS.gene049786:intron | 30.0% |
AAAAGAGAAGACTGCCTAAA+AGG | + | chr4.2:46181807-46181826 | None:intergenic | 35.0% | |
AAAAGAGGTAGAGCAAAAAG+AGG | - | chr4.2:46182837-46182856 | MS.gene049786:intron | 35.0% | |
AACATTGAACGACAAATTCG+CGG | - | chr4.2:46180622-46180641 | MS.gene049786:intron | 35.0% | |
AACCTAAAAATGCACCACAA+AGG | + | chr4.2:46184111-46184130 | None:intergenic | 35.0% | |
AACTCAATATCAATGCACCT+TGG | - | chr4.2:46181984-46182003 | MS.gene049786:intron | 35.0% | |
AAGAGAATAAGTCAGCAAAG+CGG | - | chr4.2:46183629-46183648 | MS.gene049786:CDS | 35.0% | |
AAGGAGTTTAGATTAGATGG+AGG | - | chr4.2:46181079-46181098 | MS.gene049786:CDS | 35.0% | |
AATCTACACTTTGTGCATGT+TGG | - | chr4.2:46182122-46182141 | MS.gene049786:intron | 35.0% | |
AATGTATGGAAGAGTTAGAG+AGG | - | chr4.2:46183718-46183737 | MS.gene049786:intron | 35.0% | |
ACCATAGAATGACATTGACA+AGG | - | chr4.2:46183509-46183528 | MS.gene049786:intron | 35.0% | |
ACCTATAGTAGAAAAGATCG+TGG | - | chr4.2:46181001-46181020 | MS.gene049786:CDS | 35.0% | |
ATCAAGCACAAAAGCTAACT+TGG | + | chr4.2:46182284-46182303 | None:intergenic | 35.0% | |
ATTCCACTTAGTTAACTGGA+GGG | + | chr4.2:46182360-46182379 | None:intergenic | 35.0% | |
ATTGACAAGCTTCATAACCT+CGG | + | chr4.2:46184540-46184559 | None:intergenic | 35.0% | |
CAACATAAATGTTCCACTCT+TGG | - | chr4.2:46182751-46182770 | MS.gene049786:intron | 35.0% | |
CAATCTCTCAATAACTGTTG+CGG | + | chr4.2:46180574-46180593 | None:intergenic | 35.0% | |
CATAACTGAACTTGACTAGT+AGG | - | chr4.2:46183574-46183593 | MS.gene049786:intron | 35.0% | |
CCAAATTAAAACAGGAAGAG+AGG | - | chr4.2:46184180-46184199 | MS.gene049786:intron | 35.0% | |
CCATAGAATGACATTGACAA+GGG | - | chr4.2:46183510-46183529 | MS.gene049786:intron | 35.0% | |
CTAAAAGAGACCAAACTAGA+GGG | - | chr4.2:46182648-46182667 | MS.gene049786:intron | 35.0% | |
CTAGAAATTGTTTAGTCTGC+AGG | - | chr4.2:46183334-46183353 | MS.gene049786:intron | 35.0% | |
CTATCCCACTTAATGTGATA+AGG | - | chr4.2:46181236-46181255 | MS.gene049786:intron | 35.0% | |
CTATTAAAGAAGCTGCTAAG+AGG | - | chr4.2:46180778-46180797 | MS.gene049786:CDS | 35.0% | |
CTCAAGATGACTAATTGCAA+AGG | + | chr4.2:46184410-46184429 | None:intergenic | 35.0% | |
CTCTCAAGTCACACTAATTA+TGG | - | chr4.2:46184950-46184969 | MS.gene049786:intron | 35.0% | |
CTTATCACATTAAGTGGGAT+AGG | + | chr4.2:46181238-46181257 | None:intergenic | 35.0% | |
CTTGTTAGGAAAGATTCCAA+AGG | - | chr4.2:46183060-46183079 | MS.gene049786:intron | 35.0% | |
GAAAGACAGTACATTGAATG+AGG | + | chr4.2:46181540-46181559 | None:intergenic | 35.0% | |
GTAGGTAAGAAACCTTTGAT+AGG | - | chr4.2:46183592-46183611 | MS.gene049786:CDS | 35.0% | |
GTTTCAAAAGGCTAGAAGTT+TGG | + | chr4.2:46181494-46181513 | None:intergenic | 35.0% | |
TAACAGGAGGTAATAGTTGT+GGG | - | chr4.2:46183680-46183699 | MS.gene049786:intron | 35.0% | |
TAACCGTCTGCATGAAAATA+AGG | - | chr4.2:46181953-46181972 | MS.gene049786:intron | 35.0% | |
TATAGCTAGGAACAGGAAAA+GGG | - | chr4.2:46182807-46182826 | MS.gene049786:intron | 35.0% | |
TATTCCACTTAGTTAACTGG+AGG | + | chr4.2:46182361-46182380 | None:intergenic | 35.0% | |
TGCACGAAGAGGATAAATTA+AGG | + | chr4.2:46182046-46182065 | None:intergenic | 35.0% | |
TGTGCACTTAACATGATCAA+TGG | - | chr4.2:46182877-46182896 | MS.gene049786:intron | 35.0% | |
TTAACAGGAGGTAATAGTTG+TGG | - | chr4.2:46183679-46183698 | MS.gene049786:intron | 35.0% | |
TTCGTGCATGTTTGATATCA+TGG | - | chr4.2:46182058-46182077 | MS.gene049786:intron | 35.0% | |
TTGGTACTGTATTCTGTTTC+AGG | - | chr4.2:46184696-46184715 | MS.gene049786:intron | 35.0% | |
TTTAATTGACACCTCCTTTG+TGG | - | chr4.2:46184094-46184113 | MS.gene049786:intron | 35.0% | |
! | CAAGCCTTATCACATTAAGT+GGG | + | chr4.2:46181243-46181262 | None:intergenic | 35.0% |
! | GCAGACTAAACAATTTCTAG+AGG | + | chr4.2:46183334-46183353 | None:intergenic | 35.0% |
! | TACCCAATTGAAGGCATATT+CGG | - | chr4.2:46181645-46181664 | MS.gene049786:intron | 35.0% |
! | TCCACGATCTTTTCTACTAT+AGG | + | chr4.2:46181005-46181024 | None:intergenic | 35.0% |
! | TTTCTCTTTTTCTTACGCCT+TGG | + | chr4.2:46183039-46183058 | None:intergenic | 35.0% |
!! | ATTTTATTCACGAGGCATTC+TGG | - | chr4.2:46183106-46183125 | MS.gene049786:intron | 35.0% |
!! | GTAAAAAGAGCCTTGTTAAC+AGG | + | chr4.2:46184928-46184947 | None:intergenic | 35.0% |
!! | GTGCTTATGCATGTTTTTGA+GGG | - | chr4.2:46183182-46183201 | MS.gene049786:intron | 35.0% |
!! | TTTTATTCACGAGGCATTCT+GGG | - | chr4.2:46183107-46183126 | MS.gene049786:intron | 35.0% |
!!! | CCTCTCTTCCTGTTTTAATT+TGG | + | chr4.2:46184183-46184202 | None:intergenic | 35.0% |
!!! | GGGGATAGTTTTATATAACC+AGG | - | chr4.2:46182964-46182983 | MS.gene049786:intron | 35.0% |
!!! | TTCTAGCCTTTTGAAACAAC+AGG | - | chr4.2:46181497-46181516 | MS.gene049786:intron | 35.0% |
AACATGCTATAGCTAGGAAC+AGG | - | chr4.2:46182800-46182819 | MS.gene049786:intron | 40.0% | |
AACTGACTGTGATGTCTGTT+TGG | - | chr4.2:46182724-46182743 | MS.gene049786:intron | 40.0% | |
ACACCGAATATGCCTTCAAT+TGG | + | chr4.2:46181651-46181670 | None:intergenic | 40.0% | |
AGATCGTGGAAGTTATGCTT+AGG | - | chr4.2:46181015-46181034 | MS.gene049786:CDS | 40.0% | |
AGGCATTCATTCCTTAGTCA+TGG | - | chr4.2:46182984-46183003 | MS.gene049786:intron | 40.0% | |
AGTACGAGCAATTGCTGAAA+AGG | + | chr4.2:46184495-46184514 | None:intergenic | 40.0% | |
AGTATGTTTGGTATCGCAGT+GGG | + | chr4.2:46182245-46182264 | None:intergenic | 40.0% | |
AGTGAGGGCCAAATTAAAAC+AGG | - | chr4.2:46184172-46184191 | MS.gene049786:intron | 40.0% | |
ATGACTAAGGAATGAATGCC+TGG | + | chr4.2:46182985-46183004 | None:intergenic | 40.0% | |
ATGTGGTCATGTAGAGACTA+GGG | - | chr4.2:46183752-46183771 | MS.gene049786:intron | 40.0% | |
CACCGAATATGCCTTCAATT+GGG | + | chr4.2:46181650-46181669 | None:intergenic | 40.0% | |
CCACTTAATGTGATAAGGCT+TGG | - | chr4.2:46181241-46181260 | MS.gene049786:intron | 40.0% | |
CCCTTGTCAATGTCATTCTA+TGG | + | chr4.2:46183513-46183532 | None:intergenic | 40.0% | |
CGCAACAGTTATTGAGAGAT+TGG | - | chr4.2:46180572-46180591 | MS.gene049786:CDS | 40.0% | |
CGCATGTTTGGTATCACAAT+GGG | + | chr4.2:46182179-46182198 | None:intergenic | 40.0% | |
CGTTGGATGTGTTGTAATAC+TGG | - | chr4.2:46180932-46180951 | MS.gene049786:intron | 40.0% | |
CTAAAAATGCACCACAAAGG+AGG | + | chr4.2:46184108-46184127 | None:intergenic | 40.0% | |
CTACAGAACTTGTGAGATCT+AGG | - | chr4.2:46181922-46181941 | MS.gene049786:intron | 40.0% | |
CTATAGCTAGGAACAGGAAA+AGG | - | chr4.2:46182806-46182825 | MS.gene049786:intron | 40.0% | |
CTCAATAACTGTTGCGGATT+TGG | + | chr4.2:46180568-46180587 | None:intergenic | 40.0% | |
CTGAAAAGGCAGCCAAAATT+AGG | + | chr4.2:46184481-46184500 | None:intergenic | 40.0% | |
CTGTCTTTCTGCTGAATGTA+AGG | - | chr4.2:46181551-46181570 | MS.gene049786:intron | 40.0% | |
GAAAAGGGTCTTAGCAAAAG+AGG | - | chr4.2:46182822-46182841 | MS.gene049786:intron | 40.0% | |
GAATATGCCTTCAATTGGGT+AGG | + | chr4.2:46181646-46181665 | None:intergenic | 40.0% | |
GATATCAAACATGCACGAAG+AGG | + | chr4.2:46182057-46182076 | None:intergenic | 40.0% | |
GCAGGAGAAATGAAGTATGA+AGG | + | chr4.2:46184631-46184650 | None:intergenic | 40.0% | |
GCTAAAAGAGACCAAACTAG+AGG | - | chr4.2:46182647-46182666 | MS.gene049786:intron | 40.0% | |
GCTTGTCAATAACCTCATGA+AGG | - | chr4.2:46184550-46184569 | MS.gene049786:intron | 40.0% | |
GGAAGAGTTAGAGAGGAAAT+TGG | - | chr4.2:46183725-46183744 | MS.gene049786:intron | 40.0% | |
GGATCTCGAAATAACTAGCA+AGG | - | chr4.2:46183773-46183792 | MS.gene049786:intron | 40.0% | |
GGCATTCATTCCTTAGTCAT+GGG | - | chr4.2:46182985-46183004 | MS.gene049786:intron | 40.0% | |
GTGATCGGTCTTAACATGTA+TGG | + | chr4.2:46181620-46181639 | None:intergenic | 40.0% | |
GTGCATGTTTGATATCATGG+TGG | - | chr4.2:46182061-46182080 | MS.gene049786:intron | 40.0% | |
GTTCAGCAAAGAAATGACCA+AGG | - | chr4.2:46184601-46184620 | MS.gene049786:intron | 40.0% | |
TACTGTATTCTGTTTCAGGC+AGG | - | chr4.2:46184700-46184719 | MS.gene049786:intron | 40.0% | |
TATACCTAGGGACAGGAAAA+GGG | - | chr4.2:46182605-46182624 | MS.gene049786:intron | 40.0% | |
TATGTGGTCATGTAGAGACT+AGG | - | chr4.2:46183751-46183770 | MS.gene049786:intron | 40.0% | |
TCAGGCGTATATATCAGTGT+TGG | - | chr4.2:46183160-46183179 | MS.gene049786:intron | 40.0% | |
TCTTTCTGCTGAATGTAAGG+TGG | - | chr4.2:46181554-46181573 | MS.gene049786:intron | 40.0% | |
TGAAGCTGTGAGGAAACAAA+AGG | - | chr4.2:46184852-46184871 | MS.gene049786:intron | 40.0% | |
TGACTCAGCATTAGATTCTG+AGG | - | chr4.2:46184753-46184772 | MS.gene049786:intron | 40.0% | |
TGCTGAATGTAAGGTGGAAT+AGG | - | chr4.2:46181560-46181579 | MS.gene049786:intron | 40.0% | |
TGTCAAAAGTTGCGCATGTT+TGG | + | chr4.2:46182191-46182210 | None:intergenic | 40.0% | |
TGTGCATGTTGGTATCATAG+CGG | - | chr4.2:46182133-46182152 | MS.gene049786:intron | 40.0% | |
TTCTTCATCATCAACACCCT+CGG | + | chr4.2:46185008-46185027 | None:intergenic | 40.0% | |
! | AACTGTTGCGGATTTGGTTT+CGG | + | chr4.2:46180562-46180581 | None:intergenic | 40.0% |
! | AATAGCTTGTACGGAGCTTA+TGG | - | chr4.2:46183262-46183281 | MS.gene049786:intron | 40.0% |
! | AATCACATGTGTCGATGTGT+CGG | - | chr4.2:46181274-46181293 | MS.gene049786:intron | 40.0% |
! | AGCATCTGCTTCTAAAGACT+GGG | - | chr4.2:46183010-46183029 | MS.gene049786:intron | 40.0% |
! | CAACTTTTGACAAATCACGG+TGG | - | chr4.2:46182199-46182218 | MS.gene049786:intron | 40.0% |
! | CCAAGCCTTATCACATTAAG+TGG | + | chr4.2:46181244-46181263 | None:intergenic | 40.0% |
! | CTCCTTTGTGGTGCATTTTT+AGG | - | chr4.2:46184106-46184125 | MS.gene049786:intron | 40.0% |
! | GAGAGGAAATTGGAAGTATG+TGG | - | chr4.2:46183735-46183754 | MS.gene049786:intron | 40.0% |
! | GAGGGAGCTTATGAAAGTAT+TGG | - | chr4.2:46183200-46183219 | MS.gene049786:intron | 40.0% |
! | GCGCAACTTTTGACAAATCA+CGG | - | chr4.2:46182196-46182215 | MS.gene049786:intron | 40.0% |
! | TGAAGTATGAAGGCATACCT+TGG | + | chr4.2:46184621-46184640 | None:intergenic | 40.0% |
!! | CAATGGGTTTGCTAGAATCA+CGG | + | chr4.2:46182163-46182182 | None:intergenic | 40.0% |
!! | CCAACACCTGTTGTTTCAAA+AGG | + | chr4.2:46181506-46181525 | None:intergenic | 40.0% |
!! | GAATGACATTGGTTCTGCAA+AGG | - | chr4.2:46180800-46180819 | MS.gene049786:CDS | 40.0% |
!! | GGTGCTTATGCATGTTTTTG+AGG | - | chr4.2:46183181-46183200 | MS.gene049786:intron | 40.0% |
!! | GTACTGGTGTATCACCTTTT+AGG | - | chr4.2:46181790-46181809 | MS.gene049786:intron | 40.0% |
!! | TGGTGGATTTGCTAGAATCA+CGG | - | chr4.2:46182078-46182097 | MS.gene049786:intron | 40.0% |
!! | TTTTGTTTCCTCACAGCTTC+AGG | + | chr4.2:46184853-46184872 | None:intergenic | 40.0% |
!!! | CCTTTTGAAACAACAGGTGT+TGG | - | chr4.2:46181503-46181522 | MS.gene049786:intron | 40.0% |
!!! | GAGAAAGTGTTGGTAGGTTT+TGG | - | chr4.2:46182006-46182025 | MS.gene049786:intron | 40.0% |
!!! | GTGCCTTATTTTCATGCAGA+CGG | + | chr4.2:46181959-46181978 | None:intergenic | 40.0% |
AAAAAGAGGCCAACCTAGAG+GGG | - | chr4.2:46182851-46182870 | MS.gene049786:intron | 45.0% | |
AAAACAGGAAGAGAGGGGAA+AGG | - | chr4.2:46184187-46184206 | MS.gene049786:intron | 45.0% | |
AAACAGGAAGAGAGGGGAAA+GGG | - | chr4.2:46184188-46184207 | MS.gene049786:intron | 45.0% | |
AATAAGTCAGCAAAGCGGCA+GGG | - | chr4.2:46183634-46183653 | MS.gene049786:CDS | 45.0% | |
ACCTACCAACACTTTCTCCA+AGG | + | chr4.2:46182004-46182023 | None:intergenic | 45.0% | |
ACGCCTGAATAAGCTACTCA+TGG | + | chr4.2:46183148-46183167 | None:intergenic | 45.0% | |
ACTCCCTCCAGTTAACTAAG+TGG | - | chr4.2:46182354-46182373 | MS.gene049786:intron | 45.0% | |
ACTCTTGGCACACAATCTCT+AGG | - | chr4.2:46182766-46182785 | MS.gene049786:intron | 45.0% | |
ACTCTTTGCACACACTCTCT+AGG | - | chr4.2:46182562-46182581 | MS.gene049786:intron | 45.0% | |
ATGTGGTCATGTAGAGACCA+GGG | - | chr4.2:46183929-46183948 | MS.gene049786:intron | 45.0% | |
CAAAAAGAGGCCAACCTAGA+GGG | - | chr4.2:46182850-46182869 | MS.gene049786:intron | 45.0% | |
CAATTGGGTAGGACTGTGAT+CGG | + | chr4.2:46181635-46181654 | None:intergenic | 45.0% | |
CATTCTGGGTTCATTTGGGT+TGG | - | chr4.2:46183121-46183140 | MS.gene049786:intron | 45.0% | |
CATTGACAAGGGTTGCTGTA+TGG | - | chr4.2:46183521-46183540 | MS.gene049786:intron | 45.0% | |
CCGGTTTACAAGTCAAGTGA+GGG | - | chr4.2:46184157-46184176 | MS.gene049786:intron | 45.0% | |
CTAAACCTGCGCTATACCTA+GGG | - | chr4.2:46182593-46182612 | MS.gene049786:intron | 45.0% | |
CTATACCTAGGGACAGGAAA+AGG | - | chr4.2:46182604-46182623 | MS.gene049786:intron | 45.0% | |
CTCCGTACAAGCTATTCTCT+GGG | + | chr4.2:46183258-46183277 | None:intergenic | 45.0% | |
GAAAAGGGTCTTAGCGAAAG+AGG | - | chr4.2:46182620-46182639 | MS.gene049786:intron | 45.0% | |
GAGGATAGTCAGATCACTAG+AGG | - | chr4.2:46181098-46181117 | MS.gene049786:intron | 45.0% | |
GAGTATGTTTGGTATCGCAG+TGG | + | chr4.2:46182246-46182265 | None:intergenic | 45.0% | |
GCGCATGTTTGGTATCACAA+TGG | + | chr4.2:46182180-46182199 | None:intergenic | 45.0% | |
GCTCTGACACACACAAAAAC+AGG | + | chr4.2:46181744-46181763 | None:intergenic | 45.0% | |
GCTGCTAAGAGGAATGACAT+TGG | - | chr4.2:46180789-46180808 | MS.gene049786:CDS | 45.0% | |
GGTCCATGAGTAGCTTATTC+AGG | - | chr4.2:46183142-46183161 | MS.gene049786:intron | 45.0% | |
GTAATAGTTGTGGGTAGCAG+AGG | - | chr4.2:46183689-46183708 | MS.gene049786:intron | 45.0% | |
GTTTCAGGCAGGAGTAATTG+AGG | - | chr4.2:46184711-46184730 | MS.gene049786:intron | 45.0% | |
TAGAGATTGTGTGCCAAGAG+TGG | + | chr4.2:46182767-46182786 | None:intergenic | 45.0% | |
TATGTGGTCATGTAGAGACC+AGG | - | chr4.2:46183928-46183947 | MS.gene049786:intron | 45.0% | |
TCACAGTCCTACCCAATTGA+AGG | - | chr4.2:46181636-46181655 | MS.gene049786:intron | 45.0% | |
TCAGCAATTGCTCGTACTGT+GGG | - | chr4.2:46184497-46184516 | MS.gene049786:intron | 45.0% | |
TCCGTACAAGCTATTCTCTG+GGG | + | chr4.2:46183257-46183276 | None:intergenic | 45.0% | |
TCGTGGAAGTTATGCTTAGG+TGG | - | chr4.2:46181018-46181037 | MS.gene049786:CDS | 45.0% | |
TCTAAACCTGCGCTATACCT+AGG | - | chr4.2:46182592-46182611 | MS.gene049786:intron | 45.0% | |
TGACTGTGGAAGCCTATCAA+AGG | + | chr4.2:46183607-46183626 | None:intergenic | 45.0% | |
TGCATAGCAACAGCCATTTC+AGG | + | chr4.2:46184578-46184597 | None:intergenic | 45.0% | |
TGGAGATGAGAAAGTTGCGT+TGG | - | chr4.2:46180915-46180934 | MS.gene049786:intron | 45.0% | |
TGGCTAAGTCATGCATTGTC+TGG | - | chr4.2:46184225-46184244 | MS.gene049786:intron | 45.0% | |
TTCAGCAATTGCTCGTACTG+TGG | - | chr4.2:46184496-46184515 | MS.gene049786:intron | 45.0% | |
TTGAGATCTGTCACTGACAC+CGG | - | chr4.2:46180842-46180861 | MS.gene049786:CDS | 45.0% | |
! | ACCGGTTTACAAGTCAAGTG+AGG | - | chr4.2:46184156-46184175 | MS.gene049786:intron | 45.0% |
! | ACGGTGGCTCACTGTAATTT+TGG | - | chr4.2:46182215-46182234 | MS.gene049786:intron | 45.0% |
! | AGAGAGTGTGTGCAAAGAGT+GGG | + | chr4.2:46182562-46182581 | None:intergenic | 45.0% |
! | ATGCACCTTGGAGAAAGTGT+TGG | - | chr4.2:46181996-46182015 | MS.gene049786:intron | 45.0% |
! | GAGCATCTGCTTCTAAAGAC+TGG | - | chr4.2:46183009-46183028 | MS.gene049786:intron | 45.0% |
! | GAGGCATTCTGGGTTCATTT+GGG | - | chr4.2:46183117-46183136 | MS.gene049786:intron | 45.0% |
! | GCACTGACAGTTCTAATCGA+AGG | + | chr4.2:46181349-46181368 | None:intergenic | 45.0% |
! | GCTAGTTATTTCGAGATCCC+TGG | + | chr4.2:46183772-46183791 | None:intergenic | 45.0% |
! | TAGAGAGTGTGTGCAAAGAG+TGG | + | chr4.2:46182563-46182582 | None:intergenic | 45.0% |
! | TTCTAAAGACTGGGCTTCCA+AGG | - | chr4.2:46183019-46183038 | MS.gene049786:intron | 45.0% |
!! | ACCTTGGAGAAAGTGTTGGT+AGG | - | chr4.2:46182000-46182019 | MS.gene049786:intron | 45.0% |
!! | CATATTCGGTGTCAGACATG+TGG | - | chr4.2:46181659-46181678 | MS.gene049786:intron | 45.0% |
!! | CCCTCACTTGACTTGTAAAC+CGG | + | chr4.2:46184160-46184179 | None:intergenic | 45.0% |
!! | TGGCACACAATCTCTAGGAT+AGG | - | chr4.2:46182771-46182790 | MS.gene049786:intron | 45.0% |
!! | TTGCACACACTCTCTAGGAT+AGG | - | chr4.2:46182567-46182586 | MS.gene049786:intron | 45.0% |
AATCGGTAGACAGTCGCAGA+AGG | + | chr4.2:46182674-46182693 | None:intergenic | 50.0% | |
ACCTATCTCCAGCTCGTACA+GGG | - | chr4.2:46182931-46182950 | MS.gene049786:intron | 50.0% | |
ACTTCTATGACTACGGGGAG+AGG | + | chr4.2:46184659-46184678 | None:intergenic | 50.0% | |
AGCAGAGGCGACAGAATGTA+TGG | - | chr4.2:46183704-46183723 | MS.gene049786:intron | 50.0% | |
AGGGTCTTAGCGAAAGAGGT+AGG | - | chr4.2:46182624-46182643 | MS.gene049786:intron | 50.0% | |
CAACACTAACACGTCAACGC+TGG | + | chr4.2:46181718-46181737 | None:intergenic | 50.0% | |
CACAACTTCCTGAAGCTGTG+AGG | - | chr4.2:46184842-46184861 | MS.gene049786:intron | 50.0% | |
CACAGCTTCAGGAAGTTGTG+CGG | + | chr4.2:46184842-46184861 | None:intergenic | 50.0% | |
CAGATGCTCACCCATGACTA+AGG | + | chr4.2:46182998-46183017 | None:intergenic | 50.0% | |
CAGGAAGATGCTATAGCCGA+GGG | - | chr4.2:46184989-46185008 | MS.gene049786:CDS | 50.0% | |
CCATTTCAGGAGCCTTCATG+AGG | + | chr4.2:46184565-46184584 | None:intergenic | 50.0% | |
CCTCATGAAGGCTCCTGAAA+TGG | - | chr4.2:46184562-46184581 | MS.gene049786:intron | 50.0% | |
CTTTACAATGGCGGCTGTAG+TGG | - | chr4.2:46183446-46183465 | MS.gene049786:intron | 50.0% | |
GAATAAGTCAGCAAAGCGGC+AGG | - | chr4.2:46183633-46183652 | MS.gene049786:CDS | 50.0% | |
GCAAAAAGAGGCCAACCTAG+AGG | - | chr4.2:46182849-46182868 | MS.gene049786:intron | 50.0% | |
GCTCCGTACAAGCTATTCTC+TGG | + | chr4.2:46183259-46183278 | None:intergenic | 50.0% | |
GGGTCTTAGCGAAAGAGGTA+GGG | - | chr4.2:46182625-46182644 | MS.gene049786:intron | 50.0% | |
TACCTATCTCCAGCTCGTAC+AGG | - | chr4.2:46182930-46182949 | MS.gene049786:intron | 50.0% | |
TCGTACAGGGGAAAGGGAAT+GGG | - | chr4.2:46182944-46182963 | MS.gene049786:intron | 50.0% | |
TCTGTCACTGACACCGGATA+CGG | - | chr4.2:46180848-46180867 | MS.gene049786:CDS | 50.0% | |
TGACCTGACTTTAGCGAGTC+TGG | + | chr4.2:46185050-46185069 | None:intergenic | 50.0% | |
TGCAAGGAGCAAGCAACCTT+TGG | + | chr4.2:46183079-46183098 | None:intergenic | 50.0% | |
! | AAGACCCTTTTCCTGTCCCT+AGG | + | chr4.2:46182612-46182631 | None:intergenic | 50.0% |
! | AATGGCGGCTGTAGTGGTTT+TGG | - | chr4.2:46183452-46183471 | MS.gene049786:intron | 50.0% |
! | ATGGCGGCTGTAGTGGTTTT+GGG | - | chr4.2:46183453-46183472 | MS.gene049786:intron | 50.0% |
! | CGAGGCATTCTGGGTTCATT+TGG | - | chr4.2:46183116-46183135 | MS.gene049786:intron | 50.0% |
! | GACAGTTCTAATCGAAGGCG+TGG | + | chr4.2:46181344-46181363 | None:intergenic | 50.0% |
! | GCCCCAGAGAATAGCTTGTA+CGG | - | chr4.2:46183253-46183272 | MS.gene049786:intron | 50.0% |
AACTGCACGTACCTCCTCTG+CGG | + | chr4.2:46184899-46184918 | None:intergenic | 55.0% | |
AAGTTGTGCGGCTGTCTCAC+CGG | + | chr4.2:46184830-46184849 | None:intergenic | 55.0% | |
CCTATCTCCAGCTCGTACAG+GGG | - | chr4.2:46182932-46182951 | MS.gene049786:intron | 55.0% | |
CGTACAGGGGAAAGGGAATG+GGG | - | chr4.2:46182945-46182964 | MS.gene049786:intron | 55.0% | |
CTCGTACAGGGGAAAGGGAA+TGG | - | chr4.2:46182943-46182962 | MS.gene049786:intron | 55.0% | |
GCAGGAAGATGCTATAGCCG+AGG | - | chr4.2:46184988-46185007 | MS.gene049786:CDS | 55.0% | |
GTGAGTGTCAGTGCCGTATC+CGG | + | chr4.2:46180864-46180883 | None:intergenic | 55.0% | |
TAAGTGCACACAGCCCCTCT+AGG | + | chr4.2:46182867-46182886 | None:intergenic | 55.0% | |
TCCAGCTCGTACAGGGGAAA+GGG | - | chr4.2:46182938-46182957 | MS.gene049786:intron | 55.0% | |
TCGCAGAAGGCCCTCTAGTT+TGG | + | chr4.2:46182661-46182680 | None:intergenic | 55.0% | |
! | GTTCTAATCGAAGGCGTGGC+TGG | + | chr4.2:46181340-46181359 | None:intergenic | 55.0% |
!! | AAAGGGTGCTTGGGGGTAAC+TGG | - | chr4.2:46184205-46184224 | MS.gene049786:intron | 55.0% |
!! | AAGAGAGGGGAAAGGGTGCT+TGG | - | chr4.2:46184195-46184214 | MS.gene049786:intron | 55.0% |
!! | AGAGAGGGGAAAGGGTGCTT+GGG | - | chr4.2:46184196-46184215 | MS.gene049786:intron | 55.0% |
!! | TGGCGGCTGTAGTGGTTTTG+GGG | - | chr4.2:46183454-46183473 | MS.gene049786:intron | 55.0% |
!!! | GCTGTAGTGGTTTTGGGGTC+TGG | - | chr4.2:46183459-46183478 | MS.gene049786:intron | 55.0% |
CCCCTGTACGAGCTGGAGAT+AGG | + | chr4.2:46182935-46182954 | None:intergenic | 60.0% | |
CCTGCGCTATACCTAGGGAC+AGG | - | chr4.2:46182598-46182617 | MS.gene049786:intron | 60.0% | |
CCTGTCCCTAGGTATAGCGC+AGG | + | chr4.2:46182601-46182620 | None:intergenic | 60.0% | |
CTCCAGCTCGTACAGGGGAA+AGG | - | chr4.2:46182937-46182956 | MS.gene049786:intron | 60.0% | |
GGGCCAGACTCGCTAAAGTC+AGG | - | chr4.2:46185044-46185063 | MS.gene049786:CDS | 60.0% | |
TCCCTTTCCCCTGTACGAGC+TGG | + | chr4.2:46182942-46182961 | None:intergenic | 60.0% | |
TCCTCTGCGGCACTTTGAGC+AGG | + | chr4.2:46184886-46184905 | None:intergenic | 60.0% | |
TGCACACAGCCCCTCTAGGT+TGG | + | chr4.2:46182863-46182882 | None:intergenic | 60.0% | |
!! | ACCTGCTCAAAGTGCCGCAG+AGG | - | chr4.2:46184882-46184901 | MS.gene049786:intron | 60.0% |
!! | AGAGGGGAAAGGGTGCTTGG+GGG | - | chr4.2:46184198-46184217 | MS.gene049786:intron | 60.0% |
!! | GAGAGGGGAAAGGGTGCTTG+GGG | - | chr4.2:46184197-46184216 | MS.gene049786:intron | 60.0% |
!! | TGCTCAAAGTGCCGCAGAGG+AGG | - | chr4.2:46184885-46184904 | MS.gene049786:intron | 60.0% |
CTACGGGGAGAGGAGAGAGC+AGG | + | chr4.2:46184649-46184668 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 46180532 | 46185072 | 46180532 | ID=MS.gene049786 |
chr4.2 | mRNA | 46180532 | 46185072 | 46180532 | ID=MS.gene049786.t1;Parent=MS.gene049786 |
chr4.2 | exon | 46184961 | 46185072 | 46184961 | ID=MS.gene049786.t1.exon1;Parent=MS.gene049786.t1 |
chr4.2 | CDS | 46184961 | 46185072 | 46184961 | ID=cds.MS.gene049786.t1;Parent=MS.gene049786.t1 |
chr4.2 | exon | 46184783 | 46184859 | 46184783 | ID=MS.gene049786.t1.exon2;Parent=MS.gene049786.t1 |
chr4.2 | CDS | 46184783 | 46184859 | 46184783 | ID=cds.MS.gene049786.t1;Parent=MS.gene049786.t1 |
chr4.2 | exon | 46183587 | 46183689 | 46183587 | ID=MS.gene049786.t1.exon3;Parent=MS.gene049786.t1 |
chr4.2 | CDS | 46183587 | 46183689 | 46183587 | ID=cds.MS.gene049786.t1;Parent=MS.gene049786.t1 |
chr4.2 | exon | 46180982 | 46181103 | 46180982 | ID=MS.gene049786.t1.exon4;Parent=MS.gene049786.t1 |
chr4.2 | CDS | 46180982 | 46181103 | 46180982 | ID=cds.MS.gene049786.t1;Parent=MS.gene049786.t1 |
chr4.2 | exon | 46180698 | 46180886 | 46180698 | ID=MS.gene049786.t1.exon5;Parent=MS.gene049786.t1 |
chr4.2 | CDS | 46180698 | 46180886 | 46180698 | ID=cds.MS.gene049786.t1;Parent=MS.gene049786.t1 |
chr4.2 | exon | 46180532 | 46180612 | 46180532 | ID=MS.gene049786.t1.exon6;Parent=MS.gene049786.t1 |
chr4.2 | CDS | 46180532 | 46180612 | 46180532 | ID=cds.MS.gene049786.t1;Parent=MS.gene049786.t1 |
Gene Sequence |
Protein sequence |