AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77519


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77519.t1 MTR_3g084040 96.552 116 4 0 1 116 1 116 1.07e-79 232
MS.gene77519.t1 MTR_3g084040 95.960 99 4 0 1 99 1 99 9.69e-67 198
MS.gene77519.t1 MTR_4g109540 54.545 121 48 3 1 114 1 121 5.10e-38 130
MS.gene77519.t1 MTR_4g109540 51.163 129 48 4 1 114 1 129 3.25e-35 123
MS.gene77519.t1 MTR_7g013730 48.780 123 58 2 1 118 1 123 7.54e-35 122
MS.gene77519.t1 MTR_7g013740 47.656 128 54 4 1 121 1 122 6.11e-34 116
MS.gene77519.t1 MTR_3g025880 45.968 124 58 3 1 115 1 124 1.96e-31 116
MS.gene77519.t1 MTR_3g014000 43.066 137 58 5 1 129 1 125 8.95e-27 97.8
MS.gene77519.t1 MTR_3g080130 47.368 95 49 1 36 129 36 130 1.29e-26 97.4
MS.gene77519.t1 MTR_7g105260 45.714 105 53 2 23 123 19 123 1.26e-24 92.4
MS.gene77519.t1 MTR_4g070080 52.632 76 35 1 37 111 7 82 5.29e-24 90.5
MS.gene77519.t1 MTR_4g070080 52.632 76 35 1 37 111 7 82 1.27e-23 90.5
MS.gene77519.t1 MTR_4g063560 43.000 100 56 1 15 113 12 111 1.84e-23 88.6
MS.gene77519.t1 MTR_4g070190 50.000 76 37 1 37 111 9 84 2.13e-22 87.4
MS.gene77519.t1 MTR_4g070140 51.316 76 36 1 37 111 9 84 6.74e-22 87.0
MS.gene77519.t1 MTR_3g075500 45.783 83 44 1 37 118 207 289 1.21e-19 82.8
MS.gene77519.t1 MTR_7g099940 40.496 121 62 4 1 116 1 116 5.05e-19 78.2
MS.gene77519.t1 MTR_1g064230 50.000 80 39 1 37 115 197 276 1.94e-18 79.7
MS.gene77519.t1 MTR_4g081520 43.956 91 48 2 31 118 44 134 1.37e-17 74.7
MS.gene77519.t1 MTR_1g092860 37.895 95 55 2 33 126 189 280 3.63e-17 76.3
MS.gene77519.t1 MTR_4g104470 45.570 79 42 1 37 114 217 295 6.65e-17 75.5
MS.gene77519.t1 MTR_4g104470 44.706 85 44 2 37 120 123 205 5.88e-12 62.0
MS.gene77519.t1 MTR_3g055990 45.570 79 42 1 37 115 7 84 8.83e-17 76.3
MS.gene77519.t1 MTR_3g055990 45.570 79 42 1 37 115 7 84 9.06e-17 76.3
MS.gene77519.t1 MTR_4g074930 40.196 102 60 1 30 131 358 458 2.32e-16 75.1
MS.gene77519.t1 MTR_4g074930 40.196 102 60 1 30 131 370 470 2.44e-16 75.1
MS.gene77519.t1 MTR_4g074930 40.196 102 60 1 30 131 323 423 3.01e-16 74.7
MS.gene77519.t1 MTR_4g074930 40.196 102 60 1 30 131 335 435 3.02e-16 74.7
MS.gene77519.t1 MTR_6g004810 35.455 110 65 2 31 134 128 237 1.91e-15 72.4
MS.gene77519.t1 MTR_1g073690 36.471 85 54 0 32 116 108 192 4.13e-15 71.6
MS.gene77519.t1 MTR_1g073690 37.975 79 48 1 37 115 7 84 1.36e-12 64.3
MS.gene77519.t1 MTR_1g045510 46.753 77 40 1 37 112 205 281 4.21e-15 70.5
MS.gene77519.t1 MTR_1g045510 35.294 85 54 1 36 119 113 197 4.76e-12 62.0
MS.gene77519.t1 MTR_3g116130 37.079 89 55 1 36 123 29 117 6.54e-15 70.1
MS.gene77519.t1 MTR_3g065190 43.678 87 47 2 36 120 112 198 6.58e-15 70.9
MS.gene77519.t1 MTR_7g107580 40.964 83 48 1 38 119 350 432 8.57e-15 70.5
MS.gene77519.t1 MTR_7g107580 40.964 83 48 1 38 119 351 433 8.58e-15 70.5
MS.gene77519.t1 MTR_3g116130 37.079 89 55 1 36 123 29 117 1.12e-14 70.1
MS.gene77519.t1 MTR_5g097580 41.250 80 46 1 35 114 5 83 1.29e-14 70.1
MS.gene77519.t1 MTR_5g097580 34.177 79 52 0 37 115 107 185 1.41e-11 61.2
MS.gene77519.t1 MTR_5g097580 41.250 80 46 1 35 114 5 83 1.39e-14 70.1
MS.gene77519.t1 MTR_5g097580 34.177 79 52 0 37 115 107 185 1.42e-11 61.2
MS.gene77519.t1 MTR_4g035310 37.113 97 58 1 36 132 16 109 1.53e-14 68.9
MS.gene77519.t1 MTR_4g035310 37.113 97 58 1 36 132 16 109 1.54e-14 68.9
MS.gene77519.t1 MTR_3g029580 36.170 94 56 3 18 108 13 105 2.74e-14 65.9
MS.gene77519.t1 MTR_3g103420 36.905 84 53 0 32 115 113 196 3.61e-14 68.6
MS.gene77519.t1 MTR_3g103420 37.500 96 53 2 27 122 1 89 5.38e-12 62.4
MS.gene77519.t1 MTR_1g097280 34.409 93 60 1 38 129 31 123 3.85e-14 68.6
MS.gene77519.t1 MTR_8g024520 42.029 69 40 0 36 104 25 93 4.10e-14 67.8
MS.gene77519.t1 MTR_8g024520 42.029 69 40 0 36 104 25 93 4.17e-14 67.8
MS.gene77519.t1 MTR_7g117495 40.580 69 41 0 36 104 18 86 4.23e-14 67.4
MS.gene77519.t1 MTR_2g096560 38.750 80 48 1 36 114 7 86 4.42e-14 63.9
MS.gene77519.t1 MTR_7g117495 40.580 69 41 0 36 104 18 86 4.74e-14 67.4
MS.gene77519.t1 MTR_6g477870 34.091 88 51 2 36 122 95 176 5.13e-14 66.2
MS.gene77519.t1 MTR_2g026180 40.244 82 48 1 33 114 1 81 5.95e-14 68.2
MS.gene77519.t1 MTR_2g026180 31.868 91 62 0 33 123 103 193 6.48e-12 62.4
MS.gene77519.t1 MTR_8g022050 45.333 75 40 1 38 111 149 223 9.80e-14 67.4
MS.gene77519.t1 MTR_4g124940 44.000 75 41 1 38 111 133 207 2.37e-13 66.2
MS.gene77519.t1 MTR_3g092490 42.029 69 40 0 36 104 26 94 3.31e-13 63.9
MS.gene77519.t1 MTR_4g117350 38.272 81 49 1 34 113 69 149 5.50e-13 62.8
MS.gene77519.t1 MTR_1g019150 36.000 100 58 2 19 112 10 109 5.69e-13 65.5
MS.gene77519.t1 MTR_3g092490 42.029 69 40 0 36 104 26 94 5.75e-13 64.3
MS.gene77519.t1 MTR_3g092490 42.029 69 40 0 36 104 26 94 5.93e-13 64.3
MS.gene77519.t1 MTR_5g064120 37.681 69 43 0 36 104 16 84 6.49e-13 64.7
MS.gene77519.t1 MTR_1g036430 39.796 98 57 2 35 131 161 257 8.82e-13 64.7
MS.gene77519.t1 MTR_7g106440 39.080 87 52 1 34 119 210 296 1.08e-12 64.3
MS.gene77519.t1 MTR_3g075500 42.188 64 36 1 37 99 207 270 1.49e-12 63.5
MS.gene77519.t1 MTR_3g109090 41.860 86 48 2 38 122 131 215 2.02e-12 63.5
MS.gene77519.t1 MTR_3g109090 41.860 86 48 2 38 122 147 231 2.09e-12 63.5
MS.gene77519.t1 MTR_4g081510 33.913 115 66 4 3 114 16 123 2.21e-12 62.0
MS.gene77519.t1 MTR_8g463890 43.056 72 41 0 33 104 70 141 3.23e-12 63.2
MS.gene77519.t1 MTR_3g029580 35.802 81 48 3 22 99 17 96 3.32e-12 60.5
MS.gene77519.t1 MTR_5g044970 36.250 80 50 1 33 111 7 86 4.07e-12 60.8
MS.gene77519.t1 MTR_2g026180 34.177 79 52 0 33 111 33 111 5.30e-12 62.4
MS.gene77519.t1 MTR_5g071540 29.703 101 59 2 9 108 23 112 1.16e-11 59.3
MS.gene77519.t1 MTR_2g097960 40.964 83 47 2 38 118 110 192 1.57e-11 61.2
MS.gene77519.t1 MTR_4g085540 37.975 79 48 1 35 112 33 111 1.98e-11 60.8
MS.gene77519.t1 MTR_4g131970 34.906 106 65 3 31 132 160 265 2.07e-11 60.8
MS.gene77519.t1 MTR_4g036415 39.024 82 49 1 31 111 446 527 3.37e-11 60.5
MS.gene77519.t1 MTR_5g017280 37.349 83 51 1 33 115 1 82 8.14e-11 58.9
MS.gene77519.t1 MTR_5g017280 37.349 83 51 1 33 115 1 82 9.30e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77519.t1 AT3G23830 62.295 122 43 3 1 121 1 120 6.83e-48 151
MS.gene77519.t1 AT3G23830 62.295 122 43 3 1 121 1 120 6.83e-48 151
MS.gene77519.t1 AT4G13850 62.295 122 43 3 1 121 1 120 2.95e-46 147
MS.gene77519.t1 AT4G13850 62.295 122 43 3 1 121 1 120 3.89e-46 147
MS.gene77519.t1 AT4G13850 62.295 122 43 3 1 121 1 120 4.53e-46 147
MS.gene77519.t1 AT5G61030 57.983 119 45 2 1 114 1 119 6.79e-42 141
MS.gene77519.t1 AT5G61030 57.983 119 45 2 1 114 1 119 6.79e-42 141
MS.gene77519.t1 AT4G13850 59.398 133 43 3 1 132 1 123 7.63e-42 135
MS.gene77519.t1 AT1G74230 55.752 113 48 1 1 113 1 111 1.37e-38 132
MS.gene77519.t1 AT5G47320 58.772 114 41 3 1 113 1 109 2.49e-35 122
MS.gene77519.t1 AT3G08000 47.899 119 54 2 9 119 7 125 1.47e-28 102
MS.gene77519.t1 AT5G06210 50.000 100 39 2 35 133 33 122 1.00e-23 90.5
MS.gene77519.t1 AT2G21660 49.351 77 38 1 37 112 9 85 1.28e-21 85.5
MS.gene77519.t1 AT2G21660 49.351 77 38 1 37 112 9 85 1.92e-21 85.5
MS.gene77519.t1 AT5G59865 50.000 84 41 1 34 116 24 107 6.02e-21 82.4
MS.gene77519.t1 AT2G37220 50.575 87 39 2 37 122 205 288 8.65e-21 85.9
MS.gene77519.t1 AT2G37220 40.860 93 50 2 37 128 92 180 9.37e-13 64.3
MS.gene77519.t1 AT3G53460 51.807 83 39 1 37 118 258 340 1.60e-20 85.9
MS.gene77519.t1 AT3G53460 51.807 83 39 1 37 118 258 340 1.60e-20 85.9
MS.gene77519.t1 AT3G53460 51.807 83 39 1 37 118 258 340 1.60e-20 85.9
MS.gene77519.t1 AT3G53460 51.807 83 39 1 37 118 279 361 1.81e-20 86.3
MS.gene77519.t1 AT4G39260 42.169 83 47 1 37 118 7 89 1.17e-19 78.6
MS.gene77519.t1 AT1G18630 41.228 114 61 3 1 112 4 113 5.77e-19 78.6
MS.gene77519.t1 AT3G26420 44.565 92 50 1 37 127 8 99 1.09e-18 79.7
MS.gene77519.t1 AT4G24770 48.101 79 40 1 37 114 245 323 1.83e-18 80.1
MS.gene77519.t1 AT4G24770 36.449 107 67 1 23 128 137 243 4.42e-12 62.4
MS.gene77519.t1 AT4G24770 48.101 79 40 1 37 114 245 323 1.83e-18 80.1
MS.gene77519.t1 AT4G24770 36.449 107 67 1 23 128 137 243 4.42e-12 62.4
MS.gene77519.t1 AT5G50250 45.570 79 42 1 37 114 208 286 5.17e-18 78.6
MS.gene77519.t1 AT5G50250 38.298 94 57 1 36 128 113 206 1.19e-11 61.2
MS.gene77519.t1 AT2G37510 38.182 110 59 2 33 133 31 140 6.46e-18 75.5
MS.gene77519.t1 AT3G46020 45.000 80 43 1 35 113 6 85 1.52e-17 73.2
MS.gene77519.t1 AT4G39260 42.105 76 43 1 37 111 7 82 1.73e-17 73.9
MS.gene77519.t1 AT4G39260 42.105 76 43 1 37 111 7 82 4.64e-17 73.9
MS.gene77519.t1 AT4G13860 48.000 75 38 1 35 108 2 76 9.31e-17 70.9
MS.gene77519.t1 AT1G60000 51.899 79 37 1 34 111 175 253 4.79e-16 72.8
MS.gene77519.t1 AT3G20930 37.234 94 58 1 33 125 279 372 5.90e-16 73.6
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 7.47e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 9.90e-12 61.6
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 7.47e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 9.90e-12 61.6
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 7.47e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 9.90e-12 61.6
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 7.47e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 9.90e-12 61.6
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 7.47e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 9.90e-12 61.6
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 8.51e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 8.46e-12 62.0
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 8.51e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 8.46e-12 62.0
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 8.51e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 8.46e-12 62.0
MS.gene77519.t1 AT5G55550 43.038 79 44 1 37 115 7 84 8.51e-16 73.6
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 109 209 8.46e-12 62.0
MS.gene77519.t1 AT1G76460 37.363 91 54 1 36 126 24 111 1.96e-15 71.6
MS.gene77519.t1 AT5G55550 45.714 70 37 1 37 106 7 75 2.67e-15 72.0
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 156 256 5.91e-12 62.4
MS.gene77519.t1 AT5G55550 45.714 70 37 1 37 106 7 75 3.04e-15 72.0
MS.gene77519.t1 AT5G55550 31.373 102 69 1 35 136 156 256 5.77e-12 62.4
MS.gene77519.t1 AT5G54580 36.752 117 62 3 3 115 28 136 3.10e-15 68.9
MS.gene77519.t1 AT1G22330 35.398 113 66 2 36 148 17 122 5.04e-15 70.5
MS.gene77519.t1 AT1G22910 38.144 97 57 1 36 132 13 106 6.53e-15 69.7
MS.gene77519.t1 AT3G07810 41.026 78 45 1 37 114 7 83 6.68e-15 70.9
MS.gene77519.t1 AT3G07810 33.333 81 54 0 35 115 107 187 2.32e-11 60.8
MS.gene77519.t1 AT3G07810 41.026 78 45 1 37 114 7 83 6.80e-15 70.9
MS.gene77519.t1 AT3G07810 33.333 81 54 0 35 115 107 187 2.41e-11 60.8
MS.gene77519.t1 AT1G22910 38.144 97 57 1 36 132 13 106 7.89e-15 69.3
MS.gene77519.t1 AT3G52380 44.578 83 45 1 34 115 217 299 1.24e-14 69.7
MS.gene77519.t1 AT4G26650 42.308 78 44 1 37 114 16 92 1.27e-14 70.1
MS.gene77519.t1 AT4G26650 34.568 81 53 0 35 115 121 201 2.45e-12 63.5
MS.gene77519.t1 AT4G26650 42.308 78 44 1 37 114 13 89 1.27e-14 70.1
MS.gene77519.t1 AT4G26650 34.568 81 53 0 35 115 118 198 2.55e-12 63.5
MS.gene77519.t1 AT1G22910 38.144 97 57 1 36 132 13 106 1.47e-14 69.7
MS.gene77519.t1 AT1G33470 42.029 69 40 0 36 104 7 75 1.51e-14 68.6
MS.gene77519.t1 AT1G33470 42.029 69 40 0 36 104 7 75 1.54e-14 68.6
MS.gene77519.t1 AT1G33470 42.029 69 40 0 36 104 7 75 1.65e-14 68.6
MS.gene77519.t1 AT3G13224 38.889 90 54 1 28 116 92 181 1.98e-14 69.3
MS.gene77519.t1 AT3G13224 38.889 90 54 1 28 116 101 190 2.20e-14 69.3
MS.gene77519.t1 AT1G20880 42.029 69 40 0 36 104 24 92 2.40e-14 68.6
MS.gene77519.t1 AT1G20880 42.029 69 40 0 36 104 24 92 2.40e-14 68.6
MS.gene77519.t1 AT1G20880 42.029 69 40 0 36 104 24 92 2.40e-14 68.6
MS.gene77519.t1 AT1G48920 39.806 103 57 1 35 132 296 398 2.62e-14 69.3
MS.gene77519.t1 AT5G04280 39.744 78 46 1 36 112 7 84 2.93e-14 68.6
MS.gene77519.t1 AT2G46780 36.667 90 52 1 36 120 22 111 3.19e-14 68.6
MS.gene77519.t1 AT2G46780 36.667 90 52 1 36 120 22 111 3.19e-14 68.6
MS.gene77519.t1 AT1G60650 38.235 102 58 2 35 131 11 112 3.42e-14 68.2
MS.gene77519.t1 AT1G60650 38.235 102 58 2 35 131 11 112 3.42e-14 68.2
MS.gene77519.t1 AT2G18510 42.529 87 48 2 36 120 112 198 3.88e-14 68.6
MS.gene77519.t1 AT2G27330 32.632 95 63 1 35 128 20 114 3.92e-14 65.1
MS.gene77519.t1 AT5G47620 39.759 83 49 1 32 114 2 83 4.03e-14 68.6
MS.gene77519.t1 AT5G47620 35.897 78 50 0 34 111 104 181 3.73e-12 63.2
MS.gene77519.t1 AT5G47620 39.759 83 49 1 32 114 2 83 4.03e-14 68.6
MS.gene77519.t1 AT5G47620 35.897 78 50 0 34 111 104 181 3.73e-12 63.2
MS.gene77519.t1 AT5G47620 39.759 83 49 1 32 114 2 83 4.03e-14 68.6
MS.gene77519.t1 AT5G47620 35.897 78 50 0 34 111 104 181 3.73e-12 63.2
MS.gene77519.t1 AT1G54080 42.667 75 42 1 38 111 150 224 4.77e-14 68.6
MS.gene77519.t1 AT3G13224 48.529 68 35 0 28 95 101 168 5.31e-14 67.0
MS.gene77519.t1 AT2G22100 35.870 92 59 0 31 122 158 249 5.64e-14 68.2
MS.gene77519.t1 AT3G14100 42.667 75 42 1 38 111 146 220 6.39e-14 68.2
MS.gene77519.t1 AT1G78260 32.432 111 61 2 36 135 17 124 8.92e-14 67.0
MS.gene77519.t1 AT5G47620 44.595 74 37 1 32 101 2 75 1.01e-13 67.4
MS.gene77519.t1 AT5G47620 35.897 78 50 0 34 111 126 203 4.21e-12 62.8
MS.gene77519.t1 AT4G39260 40.678 59 35 0 37 95 7 65 1.08e-13 63.5
MS.gene77519.t1 AT4G14300 41.772 79 45 1 37 115 7 84 1.11e-13 67.4
MS.gene77519.t1 AT4G14300 36.585 82 52 0 35 116 109 190 1.77e-13 66.6
MS.gene77519.t1 AT4G14300 41.772 79 45 1 37 115 7 84 1.11e-13 67.4
MS.gene77519.t1 AT4G14300 36.585 82 52 0 35 116 109 190 1.77e-13 66.6
MS.gene77519.t1 AT2G33410 33.333 114 68 2 11 116 77 190 1.12e-13 67.4
MS.gene77519.t1 AT2G33410 37.349 83 51 1 37 119 7 88 1.44e-13 67.0
MS.gene77519.t1 AT4G13860 55.172 58 25 1 52 108 2 59 1.28e-13 62.4
MS.gene77519.t1 AT1G78260 38.571 70 43 0 36 105 17 86 1.62e-13 66.2
MS.gene77519.t1 AT2G21690 40.845 71 41 1 39 108 10 80 2.26e-13 62.8
MS.gene77519.t1 AT3G54770 39.130 69 42 0 36 104 17 85 2.72e-13 65.5
MS.gene77519.t1 AT3G54770 39.130 69 42 0 36 104 17 85 3.22e-13 65.1
MS.gene77519.t1 AT3G18610 40.625 96 53 3 35 129 383 475 6.42e-13 65.5
MS.gene77519.t1 AT1G17640 35.294 102 61 3 34 133 155 253 6.47e-13 65.1
MS.gene77519.t1 AT1G17640 35.294 102 61 3 34 133 155 253 6.47e-13 65.1
MS.gene77519.t1 AT1G17640 35.294 102 61 3 34 133 155 253 6.47e-13 65.1
MS.gene77519.t1 AT1G71800 35.417 96 57 3 38 131 11 103 9.20e-13 64.7
MS.gene77519.t1 AT3G18610 40.625 96 53 3 35 129 353 445 1.20e-12 64.7
MS.gene77519.t1 AT1G17370 36.634 101 56 2 38 130 141 241 1.28e-12 64.3
MS.gene77519.t1 AT1G17370 42.667 75 42 1 38 111 141 215 1.67e-12 63.9
MS.gene77519.t1 AT1G47490 38.298 94 56 2 38 129 199 292 1.76e-12 63.9
MS.gene77519.t1 AT1G47490 38.298 94 56 2 38 129 199 292 1.82e-12 63.5
MS.gene77519.t1 AT2G37510 31.111 135 59 3 33 133 31 165 1.84e-12 61.6
MS.gene77519.t1 AT1G01080 39.241 79 48 0 30 108 206 284 2.15e-12 63.2
MS.gene77519.t1 AT1G01080 39.241 79 48 0 30 108 207 285 2.28e-12 63.2
MS.gene77519.t1 AT3G18610 40.625 96 53 3 35 129 323 415 2.30e-12 63.5
MS.gene77519.t1 AT5G47620 35.000 80 52 0 35 114 45 124 2.57e-12 63.5
MS.gene77519.t1 AT1G54080 40.506 79 42 2 38 111 150 228 5.38e-12 62.4
MS.gene77519.t1 AT5G53720 36.364 77 49 0 35 111 8 84 5.60e-12 58.9
MS.gene77519.t1 AT1G49760 42.308 78 44 1 35 111 44 121 5.61e-12 62.8
MS.gene77519.t1 AT1G49760 42.308 78 44 1 35 111 44 121 5.61e-12 62.8
MS.gene77519.t1 AT1G73530 32.927 82 54 1 34 114 75 156 5.61e-12 60.8
MS.gene77519.t1 AT1G47500 36.842 95 58 2 38 130 201 295 6.00e-12 62.4
MS.gene77519.t1 AT4G20030 33.962 106 61 4 24 124 31 132 6.03e-12 60.1
MS.gene77519.t1 AT3G15010 32.673 101 68 0 4 104 43 143 6.37e-12 62.4
MS.gene77519.t1 AT3G15010 32.673 101 68 0 4 104 43 143 6.37e-12 62.4
MS.gene77519.t1 AT5G40490 34.118 85 55 1 33 116 127 211 7.50e-12 62.0
MS.gene77519.t1 AT5G54900 40.741 81 46 2 38 116 156 236 8.43e-12 62.0
MS.gene77519.t1 AT5G40490 34.118 85 55 1 35 118 112 196 9.49e-12 62.0
MS.gene77519.t1 AT1G47500 36.842 95 58 2 38 130 201 295 9.57e-12 61.6
MS.gene77519.t1 AT5G11412 34.211 76 50 0 36 111 52 127 1.02e-11 60.1
MS.gene77519.t1 AT4G03110 37.647 85 52 1 38 121 351 435 1.21e-11 61.6
MS.gene77519.t1 AT2G19380 28.302 106 76 0 9 114 381 486 1.24e-11 61.6
MS.gene77519.t1 AT5G53680 34.615 78 49 1 36 111 13 90 1.28e-11 59.7
MS.gene77519.t1 AT4G00830 35.632 87 53 2 24 109 106 190 1.54e-11 61.2
MS.gene77519.t1 AT4G00830 35.632 87 53 2 24 109 106 190 1.54e-11 61.2
MS.gene77519.t1 AT4G00830 35.632 87 53 2 24 109 106 190 1.61e-11 61.2
MS.gene77519.t1 AT4G00830 35.632 87 53 2 24 109 106 190 1.61e-11 61.2
MS.gene77519.t1 AT4G00830 35.632 87 53 2 24 109 106 190 1.61e-11 61.2
MS.gene77519.t1 AT3G10400 39.241 79 47 1 36 113 57 135 2.20e-11 60.1
MS.gene77519.t1 AT5G51300 36.585 82 51 1 31 111 475 556 4.74e-11 60.1
MS.gene77519.t1 AT5G51300 36.585 82 51 1 31 111 475 556 4.74e-11 60.1
MS.gene77519.t1 AT5G51300 36.585 82 51 1 31 111 475 556 4.74e-11 60.1
MS.gene77519.t1 AT1G13690 37.333 75 46 1 38 111 15 89 8.62e-11 57.4
MS.gene77519.t1 AT4G34110 40.506 79 46 1 35 112 35 113 9.07e-11 59.3

Find 56 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTTCATTAGGATTTAAA+TGG 0.219990 3.2:+72509172 MS.gene77519:intron
GGCGGCGGCGGTGGCGGATA+TGG 0.258028 3.2:+72509265 MS.gene77519:CDS
ACTGGAAGATCAAGGGGATT+TGG 0.334462 3.2:+72509022 MS.gene77519:CDS
GGCTACAGCGGCGGCGGCGG+TGG 0.341431 3.2:+72509256 MS.gene77519:CDS
GGCGGATATGGCGGCGGTGG+CGG 0.352054 3.2:+72509277 MS.gene77519:CDS
GGTGGCTACAGCGGCGGCGG+CGG 0.367068 3.2:+72509253 MS.gene77519:CDS
ATGGCTTTCTGTAACAAGAT+TGG 0.370753 3.2:+72508342 MS.gene77519:CDS
TACAGCGGCGGCGGCGGTGG+CGG 0.379096 3.2:+72509259 MS.gene77519:CDS
GGCGGCGGTGGCGGATATGG+CGG 0.422743 3.2:+72509268 MS.gene77519:CDS
GGATACAGCGGCGGTGGTGG+CGG 0.423190 3.2:+72509301 MS.gene77519:CDS
TGTTGATGACCAGTCTCTTA+AGG 0.428494 3.2:+72508572 MS.gene77519:CDS
GGTGGCGGATATGGCGGCGG+TGG 0.429870 3.2:+72509274 MS.gene77519:CDS
GCGGCGGTGGTGGCGGCGGT+TGG 0.430100 3.2:+72509308 MS.gene77519:CDS
GGTGGATACAGCGGCGGTGG+TGG 0.438997 3.2:+72509298 MS.gene77519:CDS
GGATATGGCGGCGGTGGCGG+TGG 0.439055 3.2:+72509280 MS.gene77519:CDS
GGCGGTGGCGGATATGGCGG+CGG 0.443925 3.2:+72509271 MS.gene77519:CDS
GCCGCCGCTGTAGCCACCTT+CGG 0.450300 3.2:-72509248 None:intergenic
TACAGCGGCGGTGGTGGCGG+CGG 0.454744 3.2:+72509304 MS.gene77519:CDS
TTGTTCATTAGGATTTAAAT+GGG 0.460304 3.2:+72509173 MS.gene77519:intron
TAGTTAAGCATGGATGAAAC+AGG 0.461015 3.2:-72508405 None:intergenic
GGCGGTGGATACAGCGGCGG+TGG 0.479612 3.2:+72509295 MS.gene77519:CDS
AGCACTCTCCATGGATGGAC+AGG 0.490812 3.2:+72509081 MS.gene77519:CDS
GAAGGTGGCTACAGCGGCGG+CGG 0.511885 3.2:+72509250 MS.gene77519:CDS
ATAGAGACACTGGAAGATCA+AGG 0.517492 3.2:+72509014 MS.gene77519:CDS
TAAATGCATCCTTAAGAGAC+TGG 0.532048 3.2:-72508581 None:intergenic
AAGGATGCATTTACAACCTA+CGG 0.532917 3.2:+72508591 MS.gene77519:CDS
GGTCATCAACATGGTAAGAA+AGG 0.538171 3.2:-72508560 None:intergenic
GGTGGACCTCGTTCCGAAGG+TGG 0.542049 3.2:+72509235 MS.gene77519:CDS
TATTACAACCTGTCCATCCA+TGG 0.550532 3.2:-72509089 None:intergenic
GTCCTATGCAAATGATAGAC+AGG 0.554294 3.2:+72509210 MS.gene77519:CDS
TGAAGTTGCAGACTCTTCAC+TGG 0.556568 3.2:-72509059 None:intergenic
TGCAACTTCAGCACTCTCCA+TGG 0.559718 3.2:+72509072 MS.gene77519:CDS
AACCTACGGAGAAGTGGTTG+AGG 0.563954 3.2:+72508605 MS.gene77519:CDS
ACTTCAGCACTCTCCATGGA+TGG 0.565520 3.2:+72509076 MS.gene77519:CDS
GCTGGTGGACCTCGTTCCGA+AGG 0.574021 3.2:+72509232 MS.gene77519:CDS
TCCGAAGGTGGCTACAGCGG+CGG 0.577472 3.2:+72509247 MS.gene77519:CDS
GAGTAGCACCTTGCCTCAAG+AGG 0.579009 3.2:-72508368 None:intergenic
GTTATCACTGATAGAGACAC+TGG 0.581409 3.2:+72509004 MS.gene77519:CDS
TATGCAAATGATAGACAGGC+TGG 0.581925 3.2:+72509214 MS.gene77519:CDS
TAGAGACACTGGAAGATCAA+GGG 0.594765 3.2:+72509015 MS.gene77519:CDS
CTGTAGCCACCTTCGGAACG+AGG 0.599008 3.2:-72509241 None:intergenic
ACCTACGGAGAAGTGGTTGA+GGG 0.603405 3.2:+72508606 MS.gene77519:CDS
AGAGACACTGGAAGATCAAG+GGG 0.604078 3.2:+72509016 MS.gene77519:CDS
ATTTACAACCTACGGAGAAG+TGG 0.607456 3.2:+72508599 MS.gene77519:CDS
GGCGGTGGCGGTGGATACAG+CGG 0.611968 3.2:+72509289 MS.gene77519:CDS
CGTTCCGAAGGTGGCTACAG+CGG 0.613095 3.2:+72509244 MS.gene77519:CDS
GTGGCGCAAGTAGTTAAGCA+TGG 0.622132 3.2:-72508415 None:intergenic
AGGTGCTACTCAGAGCACTC+AGG 0.629518 3.2:+72508380 MS.gene77519:CDS
ATTGGAAACCTCTTGAGGCA+AGG 0.631105 3.2:+72508360 MS.gene77519:CDS
TAAGAGACTGGTCATCAACA+TGG 0.631495 3.2:-72508569 None:intergenic
AGCCTGTCTATCATTTGCAT+AGG 0.655393 3.2:-72509212 None:intergenic
ACAAGATTGGAAACCTCTTG+AGG 0.658250 3.2:+72508355 MS.gene77519:CDS
ACCCTCAACCACTTCTCCGT+AGG 0.658961 3.2:-72508607 None:intergenic
GCAAATGATAGACAGGCTGG+TGG 0.673979 3.2:+72509217 MS.gene77519:CDS
GGTGGCGGTGGATACAGCGG+CGG 0.710083 3.2:+72509292 MS.gene77519:CDS
AAAGCTTGCTTGAAGACATG+TGG 0.718559 3.2:-72508434 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTATAATAAATAACTT+TGG + chr3.2:72508962-72508981 MS.gene77519:intron 10.0%
!!! ATTTTAATTGTCATTTTAGT+CGG + chr3.2:72509135-72509154 MS.gene77519:intron 15.0%
!! GAATGTTAGAAGTTAAATTT+GGG + chr3.2:72508726-72508745 MS.gene77519:intron 20.0%
!! TTGTTCATTAGGATTTAAAT+GGG + chr3.2:72509173-72509192 MS.gene77519:intron 20.0%
!!! TCTAATAAAATGTATGGTTT+TGG + chr3.2:72508521-72508540 MS.gene77519:intron 20.0%
!!! TTTATCTAGTTTTTTTATGC+TGG + chr3.2:72508479-72508498 MS.gene77519:intron 20.0%
! CTTGTTCATTAGGATTTAAA+TGG + chr3.2:72509172-72509191 MS.gene77519:intron 25.0%
! GCTGGTTAGTATTATTATTA+TGG + chr3.2:72508497-72508516 MS.gene77519:intron 25.0%
! GGAATGTTAGAAGTTAAATT+TGG + chr3.2:72508725-72508744 MS.gene77519:intron 25.0%
!! AGTCTTATGTTGATACAAAA+GGG - chr3.2:72508694-72508713 None:intergenic 25.0%
!!! AAATGTATGGTTTTGGATTT+TGG + chr3.2:72508528-72508547 MS.gene77519:intron 25.0%
!!! TATGGCTCTAATAAAATGTA+TGG + chr3.2:72508515-72508534 MS.gene77519:intron 25.0%
CACTTTAATGTATCAACTAC+CGG - chr3.2:72508891-72508910 None:intergenic 30.0%
GTCTTATGTTGATACAAAAG+GGG - chr3.2:72508693-72508712 None:intergenic 30.0%
TGAAGAGTAAGTCAAATTTC+CGG + chr3.2:72508869-72508888 MS.gene77519:intron 30.0%
! CAGTCTTATGTTGATACAAA+AGG - chr3.2:72508695-72508714 None:intergenic 30.0%
!! TTTCATTGGAGGTATTGATT+TGG + chr3.2:72508455-72508474 MS.gene77519:intron 30.0%
AAGGATGCATTTACAACCTA+CGG + chr3.2:72508591-72508610 MS.gene77519:CDS 35.0%
ATGGCTTTCTGTAACAAGAT+TGG + chr3.2:72508342-72508361 MS.gene77519:CDS 35.0%
CTGACATACTCTTGTTCATT+AGG + chr3.2:72509162-72509181 MS.gene77519:intron 35.0%
TAAATGCATCCTTAAGAGAC+TGG - chr3.2:72508584-72508603 None:intergenic 35.0%
TAGTTAAGCATGGATGAAAC+AGG - chr3.2:72508408-72508427 None:intergenic 35.0%
! ACATAAGACTGCATTGACAT+TGG + chr3.2:72508704-72508723 MS.gene77519:intron 35.0%
! TCTTCAAGCAAGCTTTTCAT+TGG + chr3.2:72508441-72508460 MS.gene77519:CDS 35.0%
!! GCATCTGCTTTGTTTGATTA+TGG + chr3.2:72508938-72508957 MS.gene77519:intron 35.0%
!! GTTTTGGATTTTGGTATCAC+AGG + chr3.2:72508537-72508556 MS.gene77519:intron 35.0%
ACAAGATTGGAAACCTCTTG+AGG + chr3.2:72508355-72508374 MS.gene77519:CDS 40.0%
AGCCTGTCTATCATTTGCAT+AGG - chr3.2:72509215-72509234 None:intergenic 40.0%
ATAGAGACACTGGAAGATCA+AGG + chr3.2:72509014-72509033 MS.gene77519:CDS 40.0%
ATTTACAACCTACGGAGAAG+TGG + chr3.2:72508599-72508618 MS.gene77519:CDS 40.0%
CTGAAGAACACATTTCAGTG+GGG + chr3.2:72508765-72508784 MS.gene77519:intron 40.0%
GCTGAAGAACACATTTCAGT+GGG + chr3.2:72508764-72508783 MS.gene77519:intron 40.0%
GGTCATCAACATGGTAAGAA+AGG - chr3.2:72508563-72508582 None:intergenic 40.0%
GTCCTATGCAAATGATAGAC+AGG + chr3.2:72509210-72509229 MS.gene77519:CDS 40.0%
GTTATCACTGATAGAGACAC+TGG + chr3.2:72509004-72509023 MS.gene77519:CDS 40.0%
TAGAGACACTGGAAGATCAA+GGG + chr3.2:72509015-72509034 MS.gene77519:CDS 40.0%
TATGCAAATGATAGACAGGC+TGG + chr3.2:72509214-72509233 MS.gene77519:CDS 40.0%
TATTACAACCTGTCCATCCA+TGG - chr3.2:72509092-72509111 None:intergenic 40.0%
TGCTGAAGAACACATTTCAG+TGG + chr3.2:72508763-72508782 MS.gene77519:intron 40.0%
! AAAGCTTGCTTGAAGACATG+TGG - chr3.2:72508437-72508456 None:intergenic 40.0%
! TAAGAGACTGGTCATCAACA+TGG - chr3.2:72508572-72508591 None:intergenic 40.0%
! TCAAGCAAGCTTTTCATTGG+AGG + chr3.2:72508444-72508463 MS.gene77519:CDS 40.0%
!! TGTTGATGACCAGTCTCTTA+AGG + chr3.2:72508572-72508591 MS.gene77519:CDS 40.0%
ACTGGAAGATCAAGGGGATT+TGG + chr3.2:72509022-72509041 MS.gene77519:CDS 45.0%
AGAGACACTGGAAGATCAAG+GGG + chr3.2:72509016-72509035 MS.gene77519:CDS 45.0%
ATTGGAAACCTCTTGAGGCA+AGG + chr3.2:72508360-72508379 MS.gene77519:CDS 45.0%
TGAAGTTGCAGACTCTTCAC+TGG - chr3.2:72509062-72509081 None:intergenic 45.0%
AACCTACGGAGAAGTGGTTG+AGG + chr3.2:72508605-72508624 MS.gene77519:CDS 50.0%
ACCTACGGAGAAGTGGTTGA+GGG + chr3.2:72508606-72508625 MS.gene77519:CDS 50.0%
ACTTCAGCACTCTCCATGGA+TGG + chr3.2:72509076-72509095 MS.gene77519:CDS 50.0%
GCAAATGATAGACAGGCTGG+TGG + chr3.2:72509217-72509236 MS.gene77519:CDS 50.0%
GTGGCGCAAGTAGTTAAGCA+TGG - chr3.2:72508418-72508437 None:intergenic 50.0%
TGCAACTTCAGCACTCTCCA+TGG + chr3.2:72509072-72509091 MS.gene77519:CDS 50.0%
ACCCTCAACCACTTCTCCGT+AGG - chr3.2:72508610-72508629 None:intergenic 55.0%
AGCACTCTCCATGGATGGAC+AGG + chr3.2:72509081-72509100 MS.gene77519:CDS 55.0%
GAGTAGCACCTTGCCTCAAG+AGG - chr3.2:72508371-72508390 None:intergenic 55.0%
!! AGGTGCTACTCAGAGCACTC+AGG + chr3.2:72508380-72508399 MS.gene77519:CDS 55.0%
CGTTCCGAAGGTGGCTACAG+CGG + chr3.2:72509244-72509263 MS.gene77519:CDS 60.0%
CTGTAGCCACCTTCGGAACG+AGG - chr3.2:72509244-72509263 None:intergenic 60.0%
GGTGGACCTCGTTCCGAAGG+TGG + chr3.2:72509235-72509254 MS.gene77519:CDS 65.0%
TCCGAAGGTGGCTACAGCGG+CGG + chr3.2:72509247-72509266 MS.gene77519:CDS 65.0%
! GCTGGTGGACCTCGTTCCGA+AGG + chr3.2:72509232-72509251 MS.gene77519:CDS 65.0%
GAAGGTGGCTACAGCGGCGG+CGG + chr3.2:72509250-72509269 MS.gene77519:CDS 70.0%
GCCGCCGCTGTAGCCACCTT+CGG - chr3.2:72509251-72509270 None:intergenic 70.0%
GGTGGATACAGCGGCGGTGG+TGG + chr3.2:72509298-72509317 MS.gene77519:CDS 70.0%
! GGATACAGCGGCGGTGGTGG+CGG + chr3.2:72509301-72509320 MS.gene77519:CDS 70.0%
! GGCGGTGGCGGTGGATACAG+CGG + chr3.2:72509289-72509308 MS.gene77519:CDS 70.0%
! GGTGGCGGTGGATACAGCGG+CGG + chr3.2:72509292-72509311 MS.gene77519:CDS 70.0%
GGCGGATATGGCGGCGGTGG+CGG + chr3.2:72509277-72509296 MS.gene77519:CDS 75.0%
GGCGGTGGATACAGCGGCGG+TGG + chr3.2:72509295-72509314 MS.gene77519:CDS 75.0%
! GGATATGGCGGCGGTGGCGG+TGG + chr3.2:72509280-72509299 MS.gene77519:CDS 75.0%
!! GGCGGCGGTGGCGGATATGG+CGG + chr3.2:72509268-72509287 MS.gene77519:CDS 75.0%
!! GGCGGTGGCGGATATGGCGG+CGG + chr3.2:72509271-72509290 MS.gene77519:CDS 75.0%
!! GGTGGCGGATATGGCGGCGG+TGG + chr3.2:72509274-72509293 MS.gene77519:CDS 75.0%
!! TACAGCGGCGGTGGTGGCGG+CGG + chr3.2:72509304-72509323 MS.gene77519:CDS 75.0%
! GGTGGCTACAGCGGCGGCGG+CGG + chr3.2:72509253-72509272 MS.gene77519:CDS 80.0%
! TACAGCGGCGGCGGCGGTGG+CGG + chr3.2:72509259-72509278 MS.gene77519:CDS 80.0%
!!! GGCGGCGGCGGTGGCGGATA+TGG + chr3.2:72509265-72509284 MS.gene77519:CDS 80.0%
! GGCTACAGCGGCGGCGGCGG+TGG + chr3.2:72509256-72509275 MS.gene77519:CDS 85.0%
!!! GCGGCGGTGGTGGCGGCGGT+TGG + chr3.2:72509308-72509327 MS.gene77519:CDS 85.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 72508342 72509333 72508342 ID=MS.gene77519
chr3.2 mRNA 72508342 72509333 72508342 ID=MS.gene77519.t1;Parent=MS.gene77519
chr3.2 exon 72508342 72508465 72508342 ID=MS.gene77519.t1.exon1;Parent=MS.gene77519.t1
chr3.2 CDS 72508342 72508465 72508342 ID=cds.MS.gene77519.t1;Parent=MS.gene77519.t1
chr3.2 exon 72508559 72508627 72508559 ID=MS.gene77519.t1.exon2;Parent=MS.gene77519.t1
chr3.2 CDS 72508559 72508627 72508559 ID=cds.MS.gene77519.t1;Parent=MS.gene77519.t1
chr3.2 exon 72508999 72509102 72508999 ID=MS.gene77519.t1.exon3;Parent=MS.gene77519.t1
chr3.2 CDS 72508999 72509102 72508999 ID=cds.MS.gene77519.t1;Parent=MS.gene77519.t1
chr3.2 exon 72509184 72509333 72509184 ID=MS.gene77519.t1.exon4;Parent=MS.gene77519.t1
chr3.2 CDS 72509184 72509333 72509184 ID=cds.MS.gene77519.t1;Parent=MS.gene77519.t1
Gene Sequence

>MS.gene77519

ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGCTACTCAGAGCACTCAGGCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGTATTGATTTGGTTTTATCTAGTTTTTTTATGCTGGTTAGTATTATTATTATGGCTCTAATAAAATGTATGGTTTTGGATTTTGGTATCACAGGCCTTTCTTACCATGTTGATGACCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGGTGAGTTCATCTTAATTTATTGTTAAGTGAATAAATTTAGCTTCATTTTGCAATGTGTTTATCCCCTTTTGTATCAACATAAGACTGCATTGACATTGGAATGTTAGAAGTTAAATTTGGGTAATTTGTATTGAATGCTGAAGAACACATTTCAGTGGGGAATATGTTTTTGTCTTTGAATTTTGAGTAGACATGCTATTTATAATCTTAGCAAGCAAACATGATATCTGTAGCTTAATTCTGAAGAGTAAGTCAAATTTCCGGTAGTTGATACATTAAAGTGTCTTTGATTATTGAAACAAAAAAAAAAGCATCTGCTTTGTTTGATTATGGTGTTTTTATAATAAATAACTTTGGCTCTGTTTTTGCAGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCAGTGAAGAGTCTGCAACTTCAGCACTCTCCATGGATGGACAGGTTGTAATATTATGTTGTTAAATGTTGATTGTATTTTAATTGTCATTTTAGTCGGTTGTCTGACATACTCTTGTTCATTAGGATTTAAATGGGCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTTCCGAAGGTGGCTACAGCGGCGGCGGCGGTGGCGGATATGGCGGCGGTGGCGGTGGATACAGCGGCGGTGGTGGCGGCGGTTGGTGA

Protein sequence

>MS.gene77519.t1

MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPRSEGGYSGGGGGGYGGGGGGYSGGGGGGW