AlfalfaGEDB | MS.gene77666

M. sativa cultivar XinJiangDaYe / MS.gene77666

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77666.t1	XP_003595973.1	99.3	307	1	1	1	307	1	306	3.20E-179	637.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77666.t1	Q84TE6	60.2	322	102	10	2	305	10	323	3.3e-100	366.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77666.t1	F6KIF1	99.3	307	1	1	1	307	1	306	2.3e-179	637.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene77666.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049182	MS.gene77666	0.821342	4.25E-53	-1.69E-46
MS.gene050379	MS.gene77666	0.830894	2.27E-55	-1.69E-46
MS.gene052053	MS.gene77666	0.800684	1.28E-48	-1.69E-46
MS.gene054635	MS.gene77666	0.807728	4.39E-50	-1.69E-46
MS.gene057148	MS.gene77666	-0.850804	1.34E-60	-1.69E-46
MS.gene057472	MS.gene77666	0.827029	1.96E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77666.t1	MTR_2g064470	99.349	307	1	1	1	307	1	306	0.0	640
MS.gene77666.t1	MTR_4g108760	44.558	294	127	11	1	262	1	290	2.12e-67	214
MS.gene77666.t1	MTR_1g069805	47.280	239	106	5	7	241	6	228	2.26e-67	212
MS.gene77666.t1	MTR_6g084430	47.982	223	108	4	7	226	1	218	3.04e-67	213
MS.gene77666.t1	MTR_7g097090	63.226	155	48	3	7	157	6	155	4.27e-67	211
MS.gene77666.t1	MTR_6g012670	51.724	203	93	3	10	208	19	220	3.91e-65	207
MS.gene77666.t1	MTR_7g085260	55.276	199	70	7	11	192	17	213	8.07e-65	209
MS.gene77666.t1	MTR_2g078700	62.420	157	54	3	8	159	20	176	1.60e-62	202
MS.gene77666.t1	MTR_6g032770	53.723	188	75	5	11	186	18	205	1.91e-61	200
MS.gene77666.t1	MTR_3g435150	51.741	201	81	5	1	187	1	199	2.23e-61	197

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77666.t1	AT1G56010	60.248	322	102	10	2	305	10	323	2.76e-127	366
MS.gene77666.t1	AT3G12977	54.839	310	92	11	3	305	10	278	4.49e-104	305
MS.gene77666.t1	AT1G56010	58.712	264	84	10	58	305	2	256	7.68e-94	279
MS.gene77666.t1	AT3G12977	48.571	280	85	11	30	305	1	225	5.83e-72	222
MS.gene77666.t1	AT5G61430	51.464	239	94	7	11	232	16	249	4.08e-69	218
MS.gene77666.t1	AT3G18400	62.987	154	53	2	7	158	1	152	4.19e-68	215
MS.gene77666.t1	AT5G07680	44.850	301	136	8	11	298	3	286	2.15e-66	211
MS.gene77666.t1	AT5G07680	44.850	301	136	8	11	298	17	300	2.36e-66	211
MS.gene77666.t1	AT5G18270	60.870	161	59	3	11	167	21	181	6.37e-65	207
MS.gene77666.t1	AT5G18270	60.870	161	59	3	11	167	21	181	6.51e-65	207

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Find 76 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTCATCACCAAGCTT+AGG	0.523339	2.4:+25855764	MS.gene77666:CDS
AACAACAATGCAAGTACATT+TGG	0.349859	2.4:+25855632	MS.gene77666:CDS
AACAATGCAAGTACATTTGG+AGG	0.528454	2.4:+25855635	MS.gene77666:CDS
AACTGCATCAGGTTATTGGA+AGG	0.632925	2.4:+25853733	MS.gene77666:CDS
AAGACTTTAGTGTTCTATCA+AGG	0.477018	2.4:+25853809	MS.gene77666:CDS
AAGTGGGTATGCCCCACATG+TGG	0.670092	2.4:+25855816	MS.gene77666:CDS
AATATGGTTGTAGATTGGGT+TGG	0.565125	2.4:-25855570	None:intergenic
ACAAATCGTGCAACTGCATC+AGG	0.442887	2.4:+25853722	MS.gene77666:CDS
ACCTTAACAAGTGTGAGCCA+TGG	0.592225	2.4:+25850737	MS.gene77666:CDS
ACTTGCATTGTTGTTATTGT+TGG	0.333988	2.4:-25855624	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACAATGCAAGTACATT+TGG	+	chr2.4:25855632-25855651	MS.gene77666:CDS	30.0%
AAGACTTTAGTGTTCTATCA+AGG	+	chr2.4:25853809-25853828	MS.gene77666:CDS	30.0%
ATGGAAGAGGATATGTATAT+TGG	+	chr2.4:25853070-25853089	MS.gene77666:intron	30.0%
ATGTAAGAATCCATTAATGC+TGG	-	chr2.4:25855473-25855492	None:intergenic	30.0%
CAAAACAAGTGTCATAGTTT+AGG	-	chr2.4:25855302-25855321	None:intergenic	30.0%
CAAAAGGATTAAGTAAACTC+AGG	+	chr2.4:25853233-25853252	MS.gene77666:intron	30.0%
CAACCATATTACAACCAATA+TGG	+	chr2.4:25855583-25855602	MS.gene77666:CDS	30.0%
CACTAAAAATTGGAATGCTT+GGG	+	chr2.4:25854116-25854135	MS.gene77666:intron	30.0%
CAGGCATATATAATAGAGAT+AGG	+	chr2.4:25851741-25851760	MS.gene77666:intron	30.0%
CTATCTCTATTATATATGCC+TGG	-	chr2.4:25851743-25851762	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	25850604	25855850	25850604	ID=MS.gene77666
chr2.4	mRNA	25850604	25855850	25850604	ID=MS.gene77666.t1;Parent=MS.gene77666
chr2.4	exon	25850604	25850769	25850604	ID=MS.gene77666.t1.exon1;Parent=MS.gene77666.t1
chr2.4	CDS	25850604	25850769	25850604	ID=cds.MS.gene77666.t1;Parent=MS.gene77666.t1
chr2.4	exon	25853648	25853922	25853648	ID=MS.gene77666.t1.exon2;Parent=MS.gene77666.t1
chr2.4	CDS	25853648	25853922	25853648	ID=cds.MS.gene77666.t1;Parent=MS.gene77666.t1
chr2.4	exon	25855368	25855850	25855368	ID=MS.gene77666.t1.exon3;Parent=MS.gene77666.t1
chr2.4	CDS	25855368	25855850	25855368	ID=cds.MS.gene77666.t1;Parent=MS.gene77666.t1

Gene Sequence

>MS.gene77666

ATGAGCAACATAAGCATGGTTGAGGCAAAGCTACCACCAGGGTTCAGATTTCATCCTAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTGACTCATAGTGATTCCTTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGGTTAGTATTAATGCTATGAATCTATAATATATGTCCCTTCATTATCATGCATTCCTTTATATACACATGACATGTTTCTTTGTATATATATGATTATGTTATTCTAAGTTCAAAATTTTCTCATAAAGAAATAGGATTATGTTGTTAATTGTGTAAGATTCTTTGAATATATGCTTGATCCATCAATTTTTCAGTTTGCTATTGCCGTTGATAAAGTACAAATGAGTTGTTACTTTCAGTTATGTTAATTAATTCTTTTTTTTTTTAAAGTAAATTAATTCTTGCTCTTTATTAAATTTTGATAAGGGTAGATTGAGGTGATGATAGCAACTGTAATGCCTATAATCCCAATCTGCATGTATACTTGTGTAGTGAGTGCTTTGATATGAAAATAATGATTGATATTTTTATTTTATTTTTGTATAAATGATTGATACTTGTTAACGGTGACTAATGATGTATTACAAAATATCAAGTTAATTTAATTTCCAATTAAGGTAGGCTAGAACTTGACTCTTTGATTTAGTGTCTTGAAAATATGTCATATTAGAAGAGTCCATAATCTTTTGATCCTTGAACCGATGGTTAAAGCTATGACTAGCTGCTTAATTCATGCATATTGATAAATGAAAGAGCCTAATGGAAACTGATATATACTCATATTTTCATTTCCTCATTGAACCAGCACCAATTATGATAGGTAGATGTTAATTGAATATGCAGTGTAAGAAAAAGTTGCAATAACTACGTAAATCAAAGACAGAAAAAATAAATTTGGTCACCAAATTTTAGATGAATTTTGTCTTTTCCATCTCTAAATTTTCGTAGCTATGTTCGATCTAATTATTACTTTGTGAAATAATTAGATCGTACATAACATTATTTCCAATCTGCATTTTTTATGTGGGTCATAAGTTGACATAAGCCTTTGTATTTTAATGTATGGCATGGTTATTATTAATTCCTAATCCCAGGCATATATAATAGAGATAGGTAGGTACAGGTGGCTGCACTCAAGTACTATATAATAAATAAAAAAATATTGGAAAATAATATTATTTATACTTATGATAAAATACATTGGAAAATAGTTTATTATTTAAAAAATATATTAATACCATTATTTATTTATAAAAAAATTATTGCTATAAAATGTTTACACGAATTCATTCATATACACATACACGCACCATGGAAAGGGATGTAGACAGTTGAGGTTAGCATCTTTGAACAGTTAGCTCTAAAAATCATATACTTTCTAAGATTATTTGCAAGATATATATATCATCACCTTAATTAATCAAAAATATTTTTATTTGGAATAAATTGACACACTGAACTTGTCCTATTATAAAGACTTTGATAGTGATTTTCATGATAATGCAAATAATTGTGTACAATGCAACAACACGCCTACACATGAACGTGATTAACTTACATGTCATATAGTAAAGTGATTGAACTTTCGAGTTTTACATATTGTTGCTGGACCAAACTAAGTCTATGTCCATCTTACTTTCATGTCAAAAGAAAAGATACAAAGTGCTGAGAGAGACTTATCATTAGGAGGGTAGTCAAAATTGCATATATAATGTTTTATATGCATGATCGTGAGGATAATTTAAAAATATTTAACCATTATATTTGTGTTTAGAAAGAGTTATTAAGAAAGTAATTTACTACATATGAAAAACTAAATATTACTAAGATTAATTTTCTTTAAAAAAAACTAAGAATAATTTGTACGAGCCGATGATATACTTTTTTTTATCAAGACATAATTTAGTGACATGTCATAATATTTTTTTCTTAATTACATACATAAATATGTAAATGGTAAAATCTAATTGAATGCATAAATATGTAAATGGTAAAATCTAATTGAATGCATGTCTAGAATATTTATTTTACCTATTTGTGCATACAAATTAAATCCAATGGTTAATCCACTTGTATTATTTTATATCTTCAAGGCCAGCAAAAAAAAAATTTCACTCTTGAAATATTTATTTTAAATTTAGTTTTTTTAACTAATTATAAACAATTTTATAAATTTAAATAGTTATGGATTTTTTTATATCAACAAGGGCAAAATAGTTTTTTAGGCTTGATATGATAGGCCAATACTGAAGCTTTTATAAAGTAGGCCATGTGTTTGTATTTTAATTATTTTGAAAATGATTTCTACTGTTTGATTATGAAATCGCCATAACTAGTTTTGGATTTTATATAAGCATGTCATCATGAAATGAAAAAGAAACTGTTAGGGGTGGCCAAATTAGAAGACATCTCAACAATTGATGGAAGAGGATATGTATATTGGGTCTATATACAATATTATATAGAGTATATAATAATAAATAATACTAATAATAATACATTTATTTTCCCTGTTTTGCCACAAACAAAATTATTACTGTTCTAATAATTAAGACAAAGGAAAAAAAGTCATGAGCATTTAATCAAAAGGATTAAGTAAACTCAGGATAATATTGTTAATGAGGACAATTGGTTTTAATTTTAACTAGTCATAGTTGACTTCAACACAAAACTTATTTCTACCTTTTATTGATCTATAATAACTGCACATGTTCCTCATCTTACTTAAATTCACATATCATATATAACAAAATAAAAAGTCTAACACCCATGTTCCATTTGATATATATTTTTTTTGAAATATTAATTTTGTTTTTCTATTATACTCGTAATTATTTATTGCTCTAACCCTTTAAAAAAAAACTATTTGTTACTCTATCTTTTTTCTATTTTTGTGATTTTTCTTTCTCATACAAATAGTATTTTTCTATAGTTATTAAAATAAACTAGGGTTTCTTAATTCTTAGTCTAATTAATGTAATGGGAATATATGGTGCAGAAGCAGCATGTGTGGGAGGGAAAGAGTGGTATTTCTATACACAAAGAGACCGTAAATATGCAACAGGGCTACGCACAAATCGTGCAACTGCATCAGGTTATTGGAAGGCAACAGGAAAGGACAGAGCTATCCTTCGTAAGGGCACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTTATGCATGAGTTTCGTATTGAGGGTCCTCATGGCCCTCCTAAAATTTCATCTTCTAAGGTAAACATGTTTATATACATACATAAGGGATTTATATTGGAAGAATTTAATTTATTTGTTTCCTAAAACTATTTCAACTATGTGCATTGAGGTTAAGTAGTTTATATTATATTCACTTGGTAACATTTTATTTTAAAGAGTAGTTCCATTAGTTTGAAAGATAATTCTTAACTTTTGTTGAATTTATTGCAATCACTAAAAATTGGAATGCTTGGGTGAAAATCAGAATTTGTATCATGTCAAGGCTTCATTTGACTAGACAAATTTTTATGTTAAAAATGACTTTAAAAAGCTTAGAAATAAAATTATAGTTGGTTGGTTGTTATTTTTTACCTTAATTTTTTTATAGGATTATAAAATTTGAGTTTAATAATAATAAAATAGATAATTATCATAGGTCTCTTAATTTAAAAAATTCATCTCAACTACTTATTGATTTTTTTTTTGAAAAGTCTTTATATTTAACTTCTATACACAAAAAAAAAAAACTCATTTTTTAATCAAGATCTTTTTATAAAGACTGCTTGATCTAACCTTTTTAAAGGAGAACAGATAATAGAAATAAGTCAGGTCAAACAAAGTATAGATAGCAAAACTTTTTTTTAAAAAACTATGTTTGGACAAAAATGACTATAGGGCCCTTGGTTTTCCATTTACAAGAAATTGTCAACTTTTTCTTTACACTAATCCTATTGGTATCATCATATATAAAATATCATTTTGCAACATATTTTTTGGTAAATAGCCTTGTATTACTTTCCTGGTATGAATGAGGGAGGCAACTTGAGATTGACAAATAAAAATTAAGGACTTTTGACTTTTTGGAATATGTTTTTATTTGTACCGAAACCAAATTTGTCTCACATGGCTATTGGCTAGAATGTGACTTCAAAAATATATTGGGTAGCTTACCTAAGTAGATCCTCTCTGAATTTTTTATTAAACACTTATGTAAGCATATGAAAGTACCAAATTCTCCTATCTACAAAACAAATAACAGTTCAAGACCTTTTGATATTTGATTGGATAACTCGGATGTTACTTTCAAATAATTGTGTTTAAAATATTTATAAAGTTCATTCGAAGTTAGAGTTATTCAATCAAAATCGATCGGTTTTGAGTTGTTGACTCGATGACCTTAATATGGGGTGGTGGGATTTGTAACAATTAAGCATTGTCATAGTTTTGCAATAGCAACCATATATGTTAAATTAAATGGTTTAAATCCGAATTTTCCAACCAATTTAACTCTAAGTTCAAACCAGTGGAACATTTGTCCCTTCTTTAGATCCCTCCGAATAGTTAACAATTAACGAAGACAATATTATAACACTTATTCATTTATTTATTGTATCTCTTAATCTATGTCAAAAAATCCTAAACTATGACACTTGTTTTGAAACGAATAGAGTAATAATAATTTGCATAATCTTGTGTATATACAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCTCCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATTCTTACATAAGTTTTGACCAAGCTCAATTCCATACAGATGAATATGAGCAAGTGCCCTGCTTCTCCATGTTTTCTCAAAACCAAACCAACCCAATCTACAACCATATTACAACCAATATGGAACCAAAATTACCTCTAGCCAACAATAACAACAATGCAAGTACATTTGGAGGAGCACCTTATAGCTTAGACCCTTTATCATGTGATAGAAAAGTGTTGAAAGCTGTTTTGAGTCAACTATCAAAGATGGAAAGAAACCCTATTAATGATCAAAACCTAAAAGGGTCATCACCAAGCTTAGGTGAAGGAAGTTCTGAGAGTTACTTATCTGAAGTGGGTATGCCCCACATGTGGAACAATTTCTAA

Protein sequence

>MS.gene77666.t1

MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSFLMIDVDLNKCEPWDIPEAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRAILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVATKPPSMGSCYDDTGSSSLPALMDSYISFDQAQFHTDEYEQVPCFSMFSQNQTNPIYNHITTNMEPKLPLANNNNNASTFGGAPYSLDPLSCDRKVLKAVLSQLSKMERNPINDQNLKGSSPSLGEGSSESYLSEVGMPHMWNNF