Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78124.t1 | RHN60559.1 | 97.6 | 694 | 17 | 0 | 1 | 694 | 1 | 694 | 0.00E+00 | 1289.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78124.t1 | Q3E7D0 | 71.5 | 713 | 180 | 5 | 1 | 694 | 1 | 709 | 1.6e-267 | 923.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78124.t1 | A0A396I4M7 | 97.6 | 694 | 17 | 0 | 1 | 694 | 1 | 694 | 0.0e+00 | 1289.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78124 | MS.gene065219 | PPI |
| MS.gene78124 | MS.gene027793 | PPI |
| MS.gene78124 | MS.gene070688 | PPI |
| MS.gene046435 | MS.gene78124 | PPI |
| MS.gene78124 | MS.gene008938 | PPI |
| MS.gene78124 | MS.gene069113 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78124.t1 | MTR_4g055290 | 96.974 | 694 | 15 | 1 | 1 | 694 | 1 | 688 | 0.0 | 1367 |
| MS.gene78124.t1 | MTR_2g084895 | 80.000 | 705 | 107 | 8 | 4 | 694 | 2 | 686 | 0.0 | 1069 |
| MS.gene78124.t1 | MTR_2g103510 | 64.126 | 669 | 166 | 9 | 27 | 694 | 4 | 599 | 0.0 | 793 |
| MS.gene78124.t1 | MTR_8g068550 | 48.974 | 731 | 316 | 10 | 17 | 694 | 37 | 763 | 0.0 | 693 |
| MS.gene78124.t1 | MTR_5g032020 | 49.569 | 696 | 329 | 7 | 17 | 694 | 14 | 705 | 0.0 | 655 |
| MS.gene78124.t1 | MTR_3g080390 | 38.175 | 537 | 294 | 6 | 154 | 686 | 15 | 517 | 3.41e-115 | 356 |
| MS.gene78124.t1 | MTR_8g086520 | 35.821 | 536 | 307 | 5 | 154 | 686 | 20 | 521 | 1.26e-112 | 350 |
| MS.gene78124.t1 | MTR_2g016460 | 35.634 | 536 | 308 | 6 | 154 | 686 | 20 | 521 | 9.57e-107 | 334 |
| MS.gene78124.t1 | MTR_8g063220 | 34.933 | 521 | 300 | 5 | 171 | 686 | 44 | 530 | 9.04e-104 | 327 |
| MS.gene78124.t1 | MTR_8g086520 | 36.345 | 487 | 275 | 5 | 154 | 639 | 20 | 472 | 1.65e-101 | 319 |
| MS.gene78124.t1 | MTR_4g106750 | 34.165 | 521 | 304 | 5 | 171 | 686 | 43 | 529 | 4.80e-99 | 315 |
| MS.gene78124.t1 | MTR_3g078270 | 35.238 | 525 | 293 | 7 | 171 | 686 | 43 | 529 | 2.94e-98 | 312 |
| MS.gene78124.t1 | MTR_4g106750 | 33.852 | 514 | 301 | 5 | 178 | 686 | 1 | 480 | 4.16e-95 | 303 |
| MS.gene78124.t1 | MTR_5g035180 | 32.950 | 522 | 310 | 5 | 171 | 686 | 48 | 535 | 1.27e-94 | 303 |
| MS.gene78124.t1 | MTR_1g021120 | 33.952 | 539 | 315 | 8 | 148 | 681 | 37 | 539 | 2.79e-93 | 300 |
| MS.gene78124.t1 | MTR_3g103230 | 33.013 | 521 | 307 | 6 | 171 | 686 | 68 | 551 | 1.85e-91 | 295 |
| MS.gene78124.t1 | MTR_1g106085 | 32.950 | 522 | 307 | 7 | 171 | 686 | 40 | 524 | 1.55e-87 | 284 |
| MS.gene78124.t1 | MTR_8g086520 | 35.484 | 434 | 244 | 5 | 255 | 686 | 6 | 405 | 5.49e-86 | 276 |
| MS.gene78124.t1 | MTR_8g086520 | 36.567 | 402 | 236 | 3 | 154 | 554 | 20 | 403 | 2.48e-85 | 275 |
| MS.gene78124.t1 | MTR_5g022110 | 31.818 | 528 | 308 | 6 | 169 | 686 | 59 | 544 | 1.34e-82 | 272 |
| MS.gene78124.t1 | MTR_4g106750 | 31.172 | 401 | 238 | 4 | 290 | 686 | 11 | 377 | 6.04e-63 | 214 |
| MS.gene78124.t1 | MTR_8g086535 | 33.621 | 116 | 77 | 0 | 436 | 551 | 1 | 116 | 8.56e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78124.t1 | AT2G27810 | 72.409 | 714 | 172 | 7 | 1 | 694 | 1 | 709 | 0.0 | 967 |
| MS.gene78124.t1 | AT2G27810 | 70.054 | 738 | 172 | 8 | 1 | 694 | 1 | 733 | 0.0 | 955 |
| MS.gene78124.t1 | AT2G27810 | 70.707 | 594 | 149 | 7 | 1 | 574 | 1 | 589 | 0.0 | 758 |
| MS.gene78124.t1 | AT2G27810 | 69.287 | 547 | 143 | 7 | 1 | 527 | 1 | 542 | 0.0 | 674 |
| MS.gene78124.t1 | AT4G38050 | 48.538 | 684 | 331 | 6 | 10 | 686 | 35 | 704 | 0.0 | 624 |
| MS.gene78124.t1 | AT2G05760 | 37.989 | 537 | 295 | 7 | 154 | 686 | 15 | 517 | 1.19e-111 | 347 |
| MS.gene78124.t1 | AT2G34190 | 35.645 | 519 | 297 | 5 | 171 | 686 | 37 | 521 | 3.27e-109 | 341 |
| MS.gene78124.t1 | AT1G60030 | 37.812 | 521 | 285 | 5 | 171 | 686 | 49 | 535 | 3.33e-109 | 341 |
| MS.gene78124.t1 | AT5G62890 | 35.125 | 521 | 299 | 5 | 171 | 686 | 43 | 529 | 4.66e-101 | 320 |
| MS.gene78124.t1 | AT5G62890 | 35.125 | 521 | 299 | 5 | 171 | 686 | 43 | 529 | 4.66e-101 | 320 |
| MS.gene78124.t1 | AT5G62890 | 35.125 | 521 | 299 | 5 | 171 | 686 | 43 | 529 | 4.66e-101 | 320 |
| MS.gene78124.t1 | AT5G49990 | 35.509 | 521 | 297 | 6 | 171 | 686 | 39 | 525 | 9.22e-101 | 319 |
| MS.gene78124.t1 | AT5G49990 | 35.509 | 521 | 297 | 6 | 171 | 686 | 39 | 525 | 9.22e-101 | 319 |
| MS.gene78124.t1 | AT5G49990 | 35.509 | 521 | 297 | 6 | 171 | 686 | 39 | 525 | 9.22e-101 | 319 |
| MS.gene78124.t1 | AT5G49990 | 35.509 | 521 | 297 | 6 | 171 | 686 | 39 | 525 | 9.22e-101 | 319 |
| MS.gene78124.t1 | AT1G49960 | 36.138 | 523 | 295 | 5 | 169 | 686 | 35 | 523 | 7.30e-96 | 306 |
| MS.gene78124.t1 | AT5G62890 | 38.480 | 421 | 240 | 3 | 171 | 590 | 43 | 445 | 3.09e-94 | 300 |
| MS.gene78124.t1 | AT1G10540 | 32.576 | 528 | 306 | 8 | 171 | 686 | 47 | 536 | 2.93e-91 | 295 |
| MS.gene78124.t1 | AT2G26510 | 34.502 | 542 | 309 | 8 | 148 | 681 | 38 | 541 | 3.45e-91 | 295 |
| MS.gene78124.t1 | AT1G65550 | 31.743 | 545 | 324 | 7 | 154 | 686 | 30 | 538 | 5.09e-83 | 273 |
| MS.gene78124.t1 | AT1G10540 | 35.165 | 364 | 206 | 6 | 171 | 526 | 47 | 388 | 1.10e-67 | 228 |
| MS.gene78124.t1 | AT2G26510 | 35.938 | 384 | 219 | 5 | 148 | 526 | 38 | 399 | 4.10e-66 | 224 |
| MS.gene78124.t1 | AT2G26510 | 36.119 | 371 | 210 | 5 | 148 | 513 | 38 | 386 | 3.90e-63 | 216 |
| MS.gene78124.t1 | AT5G25420 | 29.318 | 440 | 220 | 8 | 154 | 590 | 42 | 393 | 9.13e-50 | 180 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGACAGTGTTGTTCGTTTC+GGG | 0.136430 | 4.4:-47761176 | MS.gene78124:CDS |
| ACTCTGTTGCATATTAGTTT+TGG | 0.205061 | 4.4:-47761146 | MS.gene78124:CDS |
| TACAATTGCCGTGACTAAAA+TGG | 0.212672 | 4.4:-47757494 | MS.gene78124:CDS |
| CAGCATTACGTTTCAATGTT+AGG | 0.240444 | 4.4:-47761349 | MS.gene78124:CDS |
| GGTCTCTGGGGAACTGGAAC+TGG | 0.256163 | 4.4:-47757544 | MS.gene78124:CDS |
| GCATATAATGAGGGAGCTTC+AGG | 0.257872 | 4.4:-47760823 | MS.gene78124:CDS |
| GTGGGCAATGCTCACAGCTT+GGG | 0.261248 | 4.4:-47754958 | MS.gene78124:CDS |
| CCAGAGTTACAAGGATTAAA+TGG | 0.261735 | 4.4:-47761053 | MS.gene78124:CDS |
| ACCGCCAACGCCACCCTTCC+TGG | 0.272033 | 4.4:-47762147 | MS.gene78124:CDS |
| CGAATCCACGGATGAGATTA+AGG | 0.274927 | 4.4:+47758989 | None:intergenic |
| GTAGTGTCTTGGCTGGTCTC+TGG | 0.274970 | 4.4:-47757558 | MS.gene78124:CDS |
| GACCGTTCCGGTTGTGGTTC+CGG | 0.283445 | 4.4:-47761921 | MS.gene78124:CDS |
| AACCAATTCCACCTTCTTCC+TGG | 0.286962 | 4.4:-47762105 | MS.gene78124:CDS |
| TCCTGTCTTTCACTGGAAAA+TGG | 0.291891 | 4.4:-47759033 | MS.gene78124:CDS |
| CTTCGTAAGATATCTGTTCT+TGG | 0.293844 | 4.4:-47759403 | MS.gene78124:CDS |
| ATCGACAGTGTTGTTCGTTT+CGG | 0.298954 | 4.4:-47761177 | MS.gene78124:CDS |
| CTCTTGGTCTAGCAATTACT+TGG | 0.299128 | 4.4:-47759250 | MS.gene78124:CDS |
| ATTCCTGAAGTTATGGTTGC+TGG | 0.301277 | 4.4:-47754996 | MS.gene78124:CDS |
| CATTTACTTGGCGCCGGCTT+TGG | 0.303584 | 4.4:-47761090 | MS.gene78124:CDS |
| TTGGCTGGTCTCTGGGGAAC+TGG | 0.306817 | 4.4:-47757550 | MS.gene78124:CDS |
| GGGCCTTTCCACAGCAAATA+TGG | 0.306871 | 4.4:-47754762 | MS.gene78124:CDS |
| AGATCGACTTGCGGCGGTTC+AGG | 0.312416 | 4.4:+47762004 | None:intergenic |
| TTCTGTACTGCAGGTAAGAT+TGG | 0.324602 | 4.4:-47755035 | MS.gene78124:intron |
| AAACATACCTGCATCAAATA+TGG | 0.330106 | 4.4:-47759171 | MS.gene78124:CDS |
| AGGGTGGCGTTGGCGGTTGT+TGG | 0.330214 | 4.4:+47762153 | None:intergenic |
| GATGATATTGCGAGAGCTTC+CGG | 0.337901 | 4.4:+47754908 | None:intergenic |
| TCAATACATGTACCCACTAA+TGG | 0.339501 | 4.4:+47759596 | None:intergenic |
| CCTGCCTACTTTCAACAATA+TGG | 0.342558 | 4.4:-47754849 | MS.gene78124:CDS |
| TGCTTCAATTCCTGAAGTTA+TGG | 0.348628 | 4.4:-47755003 | MS.gene78124:CDS |
| CTGATATTGTTGTCTCTCAT+AGG | 0.352579 | 4.4:-47757436 | MS.gene78124:intron |
| CCATTTAATCCTTGTAACTC+TGG | 0.353896 | 4.4:+47761053 | None:intergenic |
| GACGGTGTTCCGAGTACTAA+TGG | 0.361244 | 4.4:-47761860 | MS.gene78124:CDS |
| TCCATTCCCGTCCCCGGTGC+AGG | 0.367288 | 4.4:+47761827 | None:intergenic |
| AGCAACAGCAGGCTCCCTTC+TGG | 0.367800 | 4.4:+47753823 | None:intergenic |
| GTTTACATCACACCCTTTGT+AGG | 0.369826 | 4.4:+47759190 | None:intergenic |
| TAGTGTCTTGGCTGGTCTCT+GGG | 0.374771 | 4.4:-47757557 | MS.gene78124:CDS |
| CTTAATCTCATCCGTGGATT+CGG | 0.378682 | 4.4:-47758988 | MS.gene78124:intron |
| TAATGTGAATGCGACCGTTC+CGG | 0.381480 | 4.4:-47761933 | MS.gene78124:CDS |
| GAGACTAATGCTAGTAATTC+CGG | 0.381903 | 4.4:-47762046 | MS.gene78124:CDS |
| GCCCAGGAAGAAGGTGGAAT+TGG | 0.389499 | 4.4:+47762103 | None:intergenic |
| CGTTTCAATGTTAGGTTCGT+TGG | 0.389722 | 4.4:-47761341 | MS.gene78124:CDS |
| GGCACAGACACGTTGGAATT+CGG | 0.393113 | 4.4:+47754819 | None:intergenic |
| GCCAGGAAGGGTGGCGTTGG+CGG | 0.393298 | 4.4:+47762146 | None:intergenic |
| ACCGTTTGATCTTTAACAAC+CGG | 0.396219 | 4.4:+47761902 | None:intergenic |
| GGAAGAAGGTGGAATTGGTT+TGG | 0.399453 | 4.4:+47762108 | None:intergenic |
| CCCTACATTGTTGCTTCTCA+CGG | 0.400405 | 4.4:-47754783 | MS.gene78124:CDS |
| GGAGTTCTTAGTCGAGGAAT+TGG | 0.408542 | 4.4:-47757595 | MS.gene78124:CDS |
| GTCCAACTGCTGCAATAGTT+GGG | 0.408837 | 4.4:+47759642 | None:intergenic |
| GCTTTCTTGCTTACAGAAGC+AGG | 0.411014 | 4.4:-47759221 | MS.gene78124:CDS |
| CTCTGTACGACACCGTTTGA+TGG | 0.411962 | 4.4:+47761959 | None:intergenic |
| TGTGGGCAATGCTCACAGCT+TGG | 0.412579 | 4.4:-47754959 | MS.gene78124:CDS |
| AGGCCCTTCATTCATTTACT+TGG | 0.412655 | 4.4:-47761102 | MS.gene78124:CDS |
| TTAGTCTCACCAGAGAATTT+CGG | 0.413020 | 4.4:+47762061 | None:intergenic |
| ATACCATGCATCTTCTCTAT+TGG | 0.415257 | 4.4:-47757641 | MS.gene78124:CDS |
| ATTTCCCTATCCGTTACAAT+GGG | 0.417826 | 4.4:-47759060 | MS.gene78124:CDS |
| TCTCGCAATATCATCATAGT+TGG | 0.418972 | 4.4:-47754900 | MS.gene78124:CDS |
| GGAAGGTGTTTGTAGTGTCT+TGG | 0.420540 | 4.4:-47757569 | MS.gene78124:CDS |
| TCTTCCTGGGCGAAGAAAAC+CGG | 0.420722 | 4.4:-47762091 | MS.gene78124:CDS |
| CTTGTTATTGTTCCTGCCAT+GGG | 0.421112 | 4.4:-47761307 | MS.gene78124:CDS |
| CATTTAATCCTTGTAACTCT+GGG | 0.422116 | 4.4:+47761054 | None:intergenic |
| GTAGTTCCGATTGCGGTGTA+TGG | 0.422375 | 4.4:-47761376 | MS.gene78124:intron |
| GGCTCCCTTCTGGCAACCTC+AGG | 0.424502 | 4.4:+47753833 | None:intergenic |
| TCAGTTGGCGGTGGCCAGGA+AGG | 0.424505 | 4.4:+47762133 | None:intergenic |
| TGAGGAAGTTGTTGATGGTT+TGG | 0.424794 | 4.4:-47761771 | MS.gene78124:CDS |
| GAAAATCCGACCAGCTCTCC+AGG | 0.426806 | 4.4:+47753784 | None:intergenic |
| GCGGCGGTTCAGGCGGAATC+CGG | 0.429518 | 4.4:+47762014 | None:intergenic |
| GGGTGGCGTTGGCGGTTGTT+GGG | 0.430291 | 4.4:+47762154 | None:intergenic |
| ACAATTGCCGTGACTAAAAT+GGG | 0.430326 | 4.4:-47757493 | MS.gene78124:CDS |
| TCGAGATTGCCTTTGATACA+AGG | 0.430878 | 4.4:-47761122 | MS.gene78124:CDS |
| AGTCCAACTGCTGCAATAGT+TGG | 0.434333 | 4.4:+47759641 | None:intergenic |
| CAATACATGTACCCACTAAT+GGG | 0.435106 | 4.4:+47759597 | None:intergenic |
| TTAACAACCGGAACCACAAC+CGG | 0.437969 | 4.4:+47761914 | None:intergenic |
| GCGTTGGCGGTTGTTGGGAT+CGG | 0.443065 | 4.4:+47762159 | None:intergenic |
| TTTCTAGGATGAAGCATTGT+CGG | 0.443828 | 4.4:-47759124 | MS.gene78124:CDS |
| TTCTAGGATGAAGCATTGTC+GGG | 0.445143 | 4.4:-47759123 | MS.gene78124:CDS |
| GGAATCAGTTGGCGGTGGCC+AGG | 0.448186 | 4.4:+47762129 | None:intergenic |
| GCTTGTTATTGTTCCTGCCA+TGG | 0.449436 | 4.4:-47761308 | MS.gene78124:CDS |
| GTAATTCCGGTCAGATAAAC+CGG | 0.455135 | 4.4:-47762033 | MS.gene78124:CDS |
| TTCAGGTGGGTGAAGTGGGT+TGG | 0.455235 | 4.4:-47753764 | MS.gene78124:CDS |
| CAGTTATGGATTCCCATTAG+TGG | 0.455831 | 4.4:-47759609 | MS.gene78124:CDS |
| AGGAGCGAGGGGTATATGTT+TGG | 0.457463 | 4.4:-47753862 | MS.gene78124:CDS |
| GAGGAGGACGGTGAGGAATG+AGG | 0.458502 | 4.4:-47761789 | MS.gene78124:CDS |
| AGAGAATTTCGGCTTAAAAC+CGG | 0.461051 | 4.4:+47762072 | None:intergenic |
| GGTGTTTGTAGTGTCTTGGC+TGG | 0.461548 | 4.4:-47757565 | MS.gene78124:CDS |
| GTGGCCAGGAAGGGTGGCGT+TGG | 0.464810 | 4.4:+47762143 | None:intergenic |
| CCTCGCTCCTGCCGACTGCC+AGG | 0.465146 | 4.4:+47753875 | None:intergenic |
| GAGTTTATTATCGCCAAAGC+CGG | 0.466179 | 4.4:+47761077 | None:intergenic |
| GCATCGAGACCTCCAACTCC+TGG | 0.467563 | 4.4:-47757616 | MS.gene78124:CDS |
| ACCGGGGACGGGAATGGAGC+AGG | 0.467950 | 4.4:-47761822 | MS.gene78124:CDS |
| GGGGTGTTCCTGTCTTTCAC+TGG | 0.468349 | 4.4:-47759040 | MS.gene78124:CDS |
| GTTTCTTGTTGCTGTTATCC+TGG | 0.470083 | 4.4:-47753909 | MS.gene78124:CDS |
| CAAGCTCTACTTGGATATAC+CGG | 0.471928 | 4.4:-47760774 | MS.gene78124:CDS |
| AGGAATGAGGAAGTTGTTGA+TGG | 0.472775 | 4.4:-47761776 | MS.gene78124:CDS |
| GCGAATCCTGCACCGGGGAC+GGG | 0.472782 | 4.4:-47761833 | MS.gene78124:CDS |
| GCCTGCTCCATTCCCGTCCC+CGG | 0.473115 | 4.4:+47761821 | None:intergenic |
| CCGTTTGATGGAGGACGAAC+CGG | 0.477031 | 4.4:+47761971 | None:intergenic |
| TCTTAGTCGAGGAATTGGTT+TGG | 0.477441 | 4.4:-47757590 | MS.gene78124:CDS |
| GGCGAATCCTGCACCGGGGA+CGG | 0.480605 | 4.4:-47761834 | MS.gene78124:CDS |
| TGAATACCATACACCGCAAT+CGG | 0.481068 | 4.4:+47761370 | None:intergenic |
| ACCAATTCCACCTTCTTCCT+GGG | 0.481259 | 4.4:-47762104 | MS.gene78124:CDS |
| CGACTAAGAACTCCAGGAGT+TGG | 0.481544 | 4.4:+47757604 | None:intergenic |
| TCCTGCACCGGGGACGGGAA+TGG | 0.482918 | 4.4:-47761828 | MS.gene78124:CDS |
| TTGTCGGGTTGATACTTCTC+AGG | 0.487884 | 4.4:-47759108 | MS.gene78124:CDS |
| GAATGCGACCGTTCCGGTTG+TGG | 0.488295 | 4.4:-47761927 | MS.gene78124:CDS |
| TACTGTACCTGGCAGTCGGC+AGG | 0.488548 | 4.4:-47753882 | MS.gene78124:CDS |
| ATGATGAAGGATTTGCGTCT+AGG | 0.490724 | 4.4:-47761742 | MS.gene78124:CDS |
| CTGGTCTCCTCTGCTTCATG+TGG | 0.490910 | 4.4:-47754977 | MS.gene78124:CDS |
| TTCATTCATTTACTTGGCGC+CGG | 0.492353 | 4.4:-47761096 | MS.gene78124:CDS |
| TCTAACTGACAGATTCCTCT+TGG | 0.494730 | 4.4:-47759266 | MS.gene78124:intron |
| TCCGGTTGTTAAAGATCAAA+CGG | 0.495908 | 4.4:-47761903 | MS.gene78124:CDS |
| GGCGCCAAGTAAATGAATGA+AGG | 0.497060 | 4.4:+47761098 | None:intergenic |
| AGACCAGCAACCATAACTTC+AGG | 0.498914 | 4.4:+47754993 | None:intergenic |
| GACTTATGTCACTCTTAGTA+AGG | 0.499283 | 4.4:-47760752 | MS.gene78124:intron |
| CTGGCAGTCGGCAGGAGCGA+GGG | 0.501030 | 4.4:-47753874 | MS.gene78124:CDS |
| CTAAGAACTCCAGGAGTTGG+AGG | 0.503127 | 4.4:+47757607 | None:intergenic |
| AATGAAGGGCCTTGTATCAA+AGG | 0.507836 | 4.4:+47761113 | None:intergenic |
| TTGGCGGTGGCCAGGAAGGG+TGG | 0.508080 | 4.4:+47762137 | None:intergenic |
| GTGGGTACATGTATTGAGAT+TGG | 0.510700 | 4.4:-47759590 | MS.gene78124:CDS |
| AAGATCAAACGGTGAAGAAA+CGG | 0.511106 | 4.4:-47761892 | MS.gene78124:CDS |
| CATATAATGAGGGAGCTTCA+GGG | 0.511243 | 4.4:-47760822 | MS.gene78124:CDS |
| TCCCCAACTATTGCAGCAGT+TGG | 0.512105 | 4.4:-47759644 | MS.gene78124:CDS |
| CACACTTTGTTCGCTACACA+TGG | 0.512942 | 4.4:-47753939 | MS.gene78124:CDS |
| AGTCGATCTTGAAGCCGGTC+CGG | 0.513213 | 4.4:-47761990 | MS.gene78124:CDS |
| CCTGGCAGTCGGCAGGAGCG+AGG | 0.514393 | 4.4:-47753875 | MS.gene78124:CDS |
| CTCGCAATATCATCATAGTT+GGG | 0.515333 | 4.4:-47754899 | MS.gene78124:CDS |
| CCGTGAGAAGCAACAATGTA+GGG | 0.515358 | 4.4:+47754783 | None:intergenic |
| GGTTTGGTTGTTGATGATGA+AGG | 0.515499 | 4.4:-47761755 | MS.gene78124:CDS |
| CTTTCTTGCTTACAGAAGCA+GGG | 0.516220 | 4.4:-47759220 | MS.gene78124:CDS |
| AGTTATGGATTCCCATTAGT+GGG | 0.518231 | 4.4:-47759608 | MS.gene78124:CDS |
| TGGTGCAGTACAGATATTAG+TGG | 0.521644 | 4.4:-47759570 | MS.gene78124:CDS |
| TGGGCAATGCTCACAGCTTG+GGG | 0.524711 | 4.4:-47754957 | MS.gene78124:CDS |
| CCTACATTGTTGCTTCTCAC+GGG | 0.526397 | 4.4:-47754782 | MS.gene78124:CDS |
| TGAACCTGAGGTTGCCAGAA+GGG | 0.529846 | 4.4:-47753837 | MS.gene78124:CDS |
| TCATAATCTTTAGCAACAGC+AGG | 0.530295 | 4.4:+47753812 | None:intergenic |
| TGTACTGCAGGTAAGATTGG+AGG | 0.531768 | 4.4:-47755032 | MS.gene78124:intron |
| GATTTCCCTATCCGTTACAA+TGG | 0.531946 | 4.4:-47759061 | MS.gene78124:CDS |
| CAGTTGGCGGTGGCCAGGAA+GGG | 0.533137 | 4.4:+47762134 | None:intergenic |
| CCGGTTCGTCCTCCATCAAA+CGG | 0.536469 | 4.4:-47761971 | MS.gene78124:CDS |
| GGAATTGGTTTGGAATCAGT+TGG | 0.536596 | 4.4:+47762118 | None:intergenic |
| GGGAATGGAGCAGGCGACGC+AGG | 0.540449 | 4.4:-47761813 | MS.gene78124:CDS |
| TGGACAGGCGAATCCTGCAC+CGG | 0.541516 | 4.4:-47761840 | MS.gene78124:CDS |
| ACAAGGATTAAATGGAAATG+AGG | 0.542484 | 4.4:-47761045 | MS.gene78124:intron |
| CTAAAGATTATGAGTTACCC+TGG | 0.546431 | 4.4:-47753802 | MS.gene78124:CDS |
| AGTCGAGGAATTGGTTTGGA+AGG | 0.547058 | 4.4:-47757586 | MS.gene78124:CDS |
| TATGAGTTACCCTGGAGAGC+TGG | 0.548467 | 4.4:-47753794 | MS.gene78124:CDS |
| CGGAATCCGGTTTATCTGAC+CGG | 0.548769 | 4.4:+47762027 | None:intergenic |
| TGCCAGGTACAGTATTATCC+AGG | 0.549310 | 4.4:+47753891 | None:intergenic |
| CCATATTGTTGAAAGTAGGC+AGG | 0.553587 | 4.4:+47754849 | None:intergenic |
| AGGCATTGAAATCCTCTCCA+TGG | 0.555069 | 4.4:-47759088 | MS.gene78124:CDS |
| ATTGGTTTGGAATCAGTTGG+CGG | 0.555926 | 4.4:+47762121 | None:intergenic |
| ACATGAGAACCTCCCATGGC+AGG | 0.558714 | 4.4:+47761295 | None:intergenic |
| CCTCCATATTTGCTGTGGAA+AGG | 0.559497 | 4.4:+47754759 | None:intergenic |
| AGAAATTCAAGCATATAATG+AGG | 0.560821 | 4.4:-47760833 | MS.gene78124:CDS |
| TGATGGAGGACGAACCGGAC+CGG | 0.562812 | 4.4:+47761976 | None:intergenic |
| AATCTACGCTACAGTGAGGC+CGG | 0.564278 | 4.4:-47754927 | MS.gene78124:CDS |
| TCTTGGTCTAGCAATTACTT+GGG | 0.564511 | 4.4:-47759249 | MS.gene78124:CDS |
| GGTTTCCTTAATCTCATCCG+TGG | 0.564532 | 4.4:-47758994 | MS.gene78124:CDS |
| GTTATTGTTCCTGCCATGGG+AGG | 0.565738 | 4.4:-47761304 | MS.gene78124:CDS |
| GAAATTCAAGCATATAATGA+GGG | 0.566196 | 4.4:-47760832 | MS.gene78124:CDS |
| TCTGAAACCATATTTGATGC+AGG | 0.567358 | 4.4:+47759164 | None:intergenic |
| GTACTGCAGGTAAGATTGGA+GGG | 0.567396 | 4.4:-47755031 | MS.gene78124:intron |
| TGGAGCAGGCGACGCAGGTG+AGG | 0.567750 | 4.4:-47761808 | MS.gene78124:CDS |
| ATTCCTCGACTAAGAACTCC+AGG | 0.570179 | 4.4:+47757598 | None:intergenic |
| TTGTTGAAAGTAGGCAGGTA+CGG | 0.570766 | 4.4:+47754854 | None:intergenic |
| TACTAAGAGTGACATAAGTC+CGG | 0.572291 | 4.4:+47760755 | None:intergenic |
| TGGCAGTCGGCAGGAGCGAG+GGG | 0.572694 | 4.4:-47753873 | MS.gene78124:CDS |
| CCGCAAGTCGATCTTGAAGC+CGG | 0.573457 | 4.4:-47761995 | MS.gene78124:CDS |
| ACACCCCATTGTAACGGATA+GGG | 0.581456 | 4.4:+47759056 | None:intergenic |
| ATAAACTCCCCAGAGTTACA+AGG | 0.582734 | 4.4:-47761062 | MS.gene78124:CDS |
| ATGTAGGGCTGAAAATAACT+TGG | 0.583585 | 4.4:+47754798 | None:intergenic |
| CGACAGTGTTGTTCGTTTCG+GGG | 0.585199 | 4.4:-47761175 | MS.gene78124:CDS |
| CCGTGACTAAAATGGGAAGC+CGG | 0.585644 | 4.4:-47757486 | MS.gene78124:CDS |
| AGCAGGCGACGCAGGTGAGG+AGG | 0.586637 | 4.4:-47761805 | MS.gene78124:CDS |
| CACCTAGTTGAACAGACAGC+CGG | 0.586835 | 4.4:+47757467 | None:intergenic |
| ATATGTTTGGTCTGAACCTG+AGG | 0.587555 | 4.4:-47753849 | MS.gene78124:CDS |
| GATGCCATATTGTTGAAAGT+AGG | 0.587903 | 4.4:+47754845 | None:intergenic |
| TGGTCTCCTCTGCTTCATGT+GGG | 0.593957 | 4.4:-47754976 | MS.gene78124:CDS |
| CAAGTAATTGCTAGACCAAG+AGG | 0.594913 | 4.4:+47759251 | None:intergenic |
| AACCGGAACCACAACCGGAA+CGG | 0.598280 | 4.4:+47761919 | None:intergenic |
| TCGACTTGCGGCGGTTCAGG+CGG | 0.600099 | 4.4:+47762007 | None:intergenic |
| ATATAATGAGGGAGCTTCAG+GGG | 0.601585 | 4.4:-47760821 | MS.gene78124:CDS |
| ATAGTTGGGGATACAACTAC+AGG | 0.602089 | 4.4:+47759656 | None:intergenic |
| GCGCCAAGTAAATGAATGAA+GGG | 0.602981 | 4.4:+47761099 | None:intergenic |
| TGTTCCGAGTACTAATGGAC+AGG | 0.604492 | 4.4:-47761855 | MS.gene78124:CDS |
| TCCAACTGCTGCAATAGTTG+GGG | 0.605533 | 4.4:+47759643 | None:intergenic |
| GGACAGGCGAATCCTGCACC+GGG | 0.605656 | 4.4:-47761839 | MS.gene78124:CDS |
| CCCGTGAGAAGCAACAATGT+AGG | 0.606682 | 4.4:+47754782 | None:intergenic |
| ATAATACTGTACCTGGCAGT+CGG | 0.607040 | 4.4:-47753886 | MS.gene78124:CDS |
| CAAGAAACTAACCGAATCCA+CGG | 0.607559 | 4.4:+47758977 | None:intergenic |
| ATCCTGGATAATACTGTACC+TGG | 0.608997 | 4.4:-47753893 | MS.gene78124:CDS |
| TTCTTCGCCCAGGAAGAAGG+TGG | 0.612428 | 4.4:+47762097 | None:intergenic |
| GGTTTGGAATCAGTTGGCGG+TGG | 0.612818 | 4.4:+47762124 | None:intergenic |
| CTGAACCTGAGGTTGCCAGA+AGG | 0.613331 | 4.4:-47753838 | MS.gene78124:CDS |
| CTTTCCACAGCAAATATGGA+GGG | 0.614764 | 4.4:-47754758 | MS.gene78124:CDS |
| TTCGCCTGTCCATTAGTACT+CGG | 0.614965 | 4.4:+47761851 | None:intergenic |
| TTATCTTGTAGTTCCGATTG+CGG | 0.616014 | 4.4:-47761383 | MS.gene78124:intron |
| AGCCGGCTGTCTGTTCAACT+AGG | 0.616215 | 4.4:-47757469 | MS.gene78124:CDS |
| ACAGGAACACCCCATTGTAA+CGG | 0.618689 | 4.4:+47759050 | None:intergenic |
| CCTTTCCACAGCAAATATGG+AGG | 0.621317 | 4.4:-47754759 | MS.gene78124:CDS |
| AGTGTCTTGGCTGGTCTCTG+GGG | 0.625706 | 4.4:-47757556 | MS.gene78124:CDS |
| GGATAGGGAAATCTAAACCA+TGG | 0.629843 | 4.4:+47759071 | None:intergenic |
| TGTACGACACCGTTTGATGG+AGG | 0.632739 | 4.4:+47761962 | None:intergenic |
| ATCAAACGGTGAAGAAACGG+AGG | 0.633249 | 4.4:-47761889 | MS.gene78124:CDS |
| CGCAGGTGAGGAGGACGGTG+AGG | 0.636298 | 4.4:-47761796 | MS.gene78124:CDS |
| TCCAAGTAGAGCTTGAAAAG+CGG | 0.636401 | 4.4:+47760782 | None:intergenic |
| GCAGGAGGACATTTCTAATG+TGG | 0.639224 | 4.4:-47761201 | MS.gene78124:intron |
| AACACCCCATTGTAACGGAT+AGG | 0.641253 | 4.4:+47759055 | None:intergenic |
| AAAATCCGACCAGCTCTCCA+GGG | 0.644760 | 4.4:+47753785 | None:intergenic |
| ATTTAATCCTTGTAACTCTG+GGG | 0.644973 | 4.4:+47761055 | None:intergenic |
| ATACCCCTCCATATTTGCTG+TGG | 0.646907 | 4.4:+47754754 | None:intergenic |
| GGCGACGCAGGTGAGGAGGA+CGG | 0.648283 | 4.4:-47761801 | MS.gene78124:CDS |
| GGGAAATCTAAACCATGGAG+AGG | 0.651944 | 4.4:+47759076 | None:intergenic |
| TTTCGAATTATACCTAAACC+AGG | 0.654853 | 4.4:+47761686 | None:intergenic |
| ACTCCTGGAGTTCTTAGTCG+AGG | 0.655987 | 4.4:-47757601 | MS.gene78124:CDS |
| AGTTACCCTGGAGAGCTGGT+CGG | 0.657920 | 4.4:-47753790 | MS.gene78124:CDS |
| CTACCAATAGAGAAGATGCA+TGG | 0.658196 | 4.4:+47757638 | None:intergenic |
| TTTCCACAGCAAATATGGAG+GGG | 0.658654 | 4.4:-47754757 | MS.gene78124:intron |
| ATAACTTGGCACAGACACGT+TGG | 0.659443 | 4.4:+47754812 | None:intergenic |
| GCTTCAAGATCGACTTGCGG+CGG | 0.659759 | 4.4:+47761998 | None:intergenic |
| AATGGCTCTTGTAATGTGTG+TGG | 0.665360 | 4.4:-47759015 | MS.gene78124:CDS |
| GCATTGCCCACATGAAGCAG+AGG | 0.665633 | 4.4:+47754970 | None:intergenic |
| TATAATGAGGGAGCTTCAGG+GGG | 0.670053 | 4.4:-47760820 | MS.gene78124:CDS |
| ACTCACATGAGAACCTCCCA+TGG | 0.670641 | 4.4:+47761291 | None:intergenic |
| ATGGCAGGAACAATAACAAG+CGG | 0.676925 | 4.4:+47761310 | None:intergenic |
| TCAAACGGTGAAGAAACGGA+GGG | 0.701700 | 4.4:-47761888 | MS.gene78124:CDS |
| TTTCCCTATCCGTTACAATG+GGG | 0.707261 | 4.4:-47759059 | MS.gene78124:CDS |
| AAGAAACGGAGGGATTCTGA+CGG | 0.708275 | 4.4:-47761878 | MS.gene78124:CDS |
| CCGGCTTCAAGATCGACTTG+CGG | 0.709988 | 4.4:+47761995 | None:intergenic |
| GTCAAATCTACGCTACAGTG+AGG | 0.724020 | 4.4:-47754931 | MS.gene78124:CDS |
| GACAGGCGAATCCTGCACCG+GGG | 0.741869 | 4.4:-47761838 | MS.gene78124:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 47753757 | 47762191 | 47753757 | ID=MS.gene78124 |
| chr4.4 | mRNA | 47753757 | 47762191 | 47753757 | ID=MS.gene78124.t1;Parent=MS.gene78124 |
| chr4.4 | exon | 47761699 | 47762191 | 47761699 | ID=MS.gene78124.t1.exon1;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47761699 | 47762191 | 47761699 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47761297 | 47761394 | 47761297 | ID=MS.gene78124.t1.exon2;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47761297 | 47761394 | 47761297 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47761046 | 47761219 | 47761046 | ID=MS.gene78124.t1.exon3;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47761046 | 47761219 | 47761046 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47760753 | 47760853 | 47760753 | ID=MS.gene78124.t1.exon4;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47760753 | 47760853 | 47760753 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47759553 | 47759688 | 47759553 | ID=MS.gene78124.t1.exon5;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47759553 | 47759688 | 47759553 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47759378 | 47759428 | 47759378 | ID=MS.gene78124.t1.exon6;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47759378 | 47759428 | 47759378 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47758989 | 47759276 | 47758989 | ID=MS.gene78124.t1.exon7;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47758989 | 47759276 | 47758989 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47757437 | 47757671 | 47757437 | ID=MS.gene78124.t1.exon8;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47757437 | 47757671 | 47757437 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47754758 | 47755044 | 47754758 | ID=MS.gene78124.t1.exon9;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47754758 | 47755044 | 47754758 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| chr4.4 | exon | 47753757 | 47753978 | 47753757 | ID=MS.gene78124.t1.exon10;Parent=MS.gene78124.t1 |
| chr4.4 | CDS | 47753757 | 47753978 | 47753757 | ID=cds.MS.gene78124.t1;Parent=MS.gene78124.t1 |
| Gene Sequence |
| Protein sequence |
