Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78222.t1 | XP_024627071.1 | 100 | 156 | 0 | 0 | 1 | 156 | 1 | 156 | 1.90E-77 | 298.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78222.t1 | Q8N5L8 | 31.1 | 161 | 100 | 3 | 1 | 150 | 1 | 161 | 1.0e-10 | 68.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78222.t1 | G7L2B5 | 100.0 | 156 | 0 | 0 | 1 | 156 | 1 | 156 | 1.4e-77 | 298.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049441 | MS.gene78222 | 0.844799 | 6.05E-59 | -1.69E-46 |
| MS.gene049824 | MS.gene78222 | 0.838373 | 2.99E-57 | -1.69E-46 |
| MS.gene053122 | MS.gene78222 | 0.839151 | 1.88E-57 | -1.69E-46 |
| MS.gene057684 | MS.gene78222 | -0.813667 | 2.28E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78222.t1 | MTR_7g059030 | 100.000 | 156 | 0 | 0 | 1 | 156 | 1 | 156 | 5.72e-118 | 340 |
| MS.gene78222.t1 | MTR_3g095250 | 66.197 | 142 | 48 | 0 | 1 | 142 | 1 | 142 | 2.13e-64 | 199 |
| MS.gene78222.t1 | MTR_3g095240 | 66.901 | 142 | 47 | 0 | 1 | 142 | 1 | 142 | 2.20e-64 | 200 |
| MS.gene78222.t1 | MTR_3g095260 | 66.197 | 142 | 48 | 0 | 1 | 142 | 1 | 142 | 5.30e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78222.t1 | AT3G07030 | 74.510 | 153 | 37 | 1 | 1 | 153 | 1 | 151 | 2.01e-76 | 237 |
| MS.gene78222.t1 | AT3G07030 | 74.510 | 153 | 37 | 1 | 1 | 153 | 1 | 151 | 1.45e-74 | 231 |
| MS.gene78222.t1 | AT3G07030 | 73.718 | 156 | 39 | 1 | 1 | 156 | 1 | 154 | 2.72e-74 | 230 |
| MS.gene78222.t1 | AT3G07030 | 73.718 | 156 | 39 | 1 | 1 | 156 | 1 | 154 | 2.72e-74 | 230 |
| MS.gene78222.t1 | AT3G07030 | 73.718 | 156 | 39 | 1 | 1 | 156 | 1 | 154 | 3.38e-74 | 230 |
| MS.gene78222.t1 | AT1G76010 | 64.444 | 135 | 48 | 0 | 1 | 135 | 1 | 135 | 1.87e-54 | 177 |
| MS.gene78222.t1 | AT1G76010 | 64.444 | 135 | 48 | 0 | 1 | 135 | 1 | 135 | 1.87e-54 | 177 |
| MS.gene78222.t1 | AT1G20220 | 62.222 | 135 | 51 | 0 | 1 | 135 | 1 | 135 | 1.05e-52 | 172 |
Find 64 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGGTTGCTGCTGATAAT+TGG | 0.289288 | 7.4:-44436254 | None:intergenic |
| TTACGCCACTTCGCTTCTTC+AGG | 0.337074 | 7.4:+44433158 | MS.gene78222:CDS |
| GGAGGTCGAGGCAGAGGTTG+GGG | 0.340331 | 7.4:+44436660 | MS.gene78222:CDS |
| TTGATGGGAGTTTCAGGTTT+GGG | 0.347434 | 7.4:-44433084 | None:intergenic |
| GGGAGGTCGAGGCAGAGGTT+GGG | 0.358280 | 7.4:+44436659 | MS.gene78222:CDS |
| ATCTCAATCACCTTGTCAAC+TGG | 0.366031 | 7.4:+44435996 | MS.gene78222:CDS |
| TTCATTATCATCAGATAATA+CGG | 0.382523 | 7.4:-44436720 | None:intergenic |
| AATTGGGGAAGGGGTGGTTA+TGG | 0.397399 | 7.4:+44436437 | MS.gene78222:intron |
| TTTGATTGTTCAGCAGTAGA+TGG | 0.398319 | 7.4:-44436223 | None:intergenic |
| CGGTACAAGACCCTCTTCAA+TGG | 0.422390 | 7.4:-44435851 | None:intergenic |
| GGGGAGGTCGAGGCAGAGGT+TGG | 0.431992 | 7.4:+44436658 | MS.gene78222:CDS |
| TGACAAGGTGATTGAGATCA+TGG | 0.445665 | 7.4:-44435991 | None:intergenic |
| AACCTTCTGGTACCTGTCCA+TGG | 0.450777 | 7.4:-44433055 | None:intergenic |
| GTTGATGGGAGTTTCAGGTT+TGG | 0.453613 | 7.4:-44433085 | None:intergenic |
| GAGGTCGAGGCAGAGGTTGG+GGG | 0.460450 | 7.4:+44436661 | MS.gene78222:CDS |
| GGAAATTATCAAGGTGGATA+CGG | 0.462645 | 7.4:+44436476 | MS.gene78222:CDS |
| TTGCAGTATCTTGGTGCAAA+GGG | 0.465007 | 7.4:-44435795 | None:intergenic |
| TATGGCTATCAAGGTGGGTA+TGG | 0.468309 | 7.4:+44436455 | MS.gene78222:CDS |
| CTGAGCTGATTGCAGTATCT+TGG | 0.471182 | 7.4:-44435804 | None:intergenic |
| AGCAAAAGAGATTGTCTTGA+AGG | 0.471497 | 7.4:+44435453 | MS.gene78222:CDS |
| GAGATTGTCTTGAAGGCAAT+GGG | 0.476181 | 7.4:+44435460 | MS.gene78222:CDS |
| TTTCTCTCTCTGCCATGGAC+AGG | 0.477643 | 7.4:+44433043 | None:intergenic |
| TCTTATAATGCTGTAAATGA+AGG | 0.481848 | 7.4:+44436292 | MS.gene78222:CDS |
| GAATTGAACACAAATTCTCC+TGG | 0.491912 | 7.4:+44436020 | MS.gene78222:CDS |
| GGGTATTCTAATCGTGGCCG+AGG | 0.495644 | 7.4:+44436636 | MS.gene78222:CDS |
| GATAATTTGCATATCCACCT+TGG | 0.504702 | 7.4:-44436505 | None:intergenic |
| GGTGGATATGCAAATTATCA+AGG | 0.512065 | 7.4:+44436509 | MS.gene78222:CDS |
| GGTATTCTAATCGTGGCCGA+GGG | 0.520710 | 7.4:+44436637 | MS.gene78222:CDS |
| GGTACAAGACCCTCTTCAAT+GGG | 0.524827 | 7.4:-44435850 | None:intergenic |
| GCATTATAAGAATCCTGTGC+TGG | 0.525963 | 7.4:-44436280 | None:intergenic |
| GAATCCTGTGCTGGTTTCAG+AGG | 0.539391 | 7.4:-44436271 | None:intergenic |
| AGGGGTGGTTATGGCTATCA+AGG | 0.547547 | 7.4:+44436446 | MS.gene78222:intron |
| AGAGATTGTCTTGAAGGCAA+TGG | 0.551588 | 7.4:+44435459 | MS.gene78222:CDS |
| GGTGGGTATGGAAATTATCA+AGG | 0.557168 | 7.4:+44436467 | MS.gene78222:CDS |
| ATTGCAGTATCTTGGTGCAA+AGG | 0.575004 | 7.4:-44435796 | None:intergenic |
| TACCTTCAGAATCTCTGCAA+TGG | 0.580155 | 7.4:-44435506 | None:intergenic |
| GAGATCCGTATCACTACTCA+AGG | 0.583167 | 7.4:+44433114 | MS.gene78222:CDS |
| GTGGTTATGGCTATCAAGGT+GGG | 0.583212 | 7.4:+44436450 | MS.gene78222:CDS |
| AGTTAGCATAACAGATGTGT+GGG | 0.583306 | 7.4:+44435825 | MS.gene78222:CDS |
| GTTCAATTCTCCAGTTGACA+AGG | 0.584863 | 7.4:-44436006 | None:intergenic |
| TGGCGCCTTGAGTAGTGATA+CGG | 0.584965 | 7.4:-44433119 | None:intergenic |
| TGCTGCTGATAATTGGAGTG+TGG | 0.589124 | 7.4:-44436247 | None:intergenic |
| TCATTATCATCAGATAATAC+GGG | 0.602581 | 7.4:-44436719 | None:intergenic |
| GTGTGGGAGCCCATTGAAGA+GGG | 0.607655 | 7.4:+44435841 | MS.gene78222:CDS |
| CAGTTAGCATAACAGATGTG+TGG | 0.612311 | 7.4:+44435824 | MS.gene78222:CDS |
| GTAAGTGATGTAGTTACGAA+TGG | 0.612718 | 7.4:-44433139 | None:intergenic |
| GGTGGATACGGCTATTACCA+AGG | 0.612843 | 7.4:+44436488 | MS.gene78222:CDS |
| GGTGGTTATGGCTATCAAGG+TGG | 0.617759 | 7.4:+44436449 | MS.gene78222:CDS |
| AATTGAACACAAATTCTCCT+GGG | 0.623115 | 7.4:+44436021 | MS.gene78222:CDS |
| TGTGTGGGAGCCCATTGAAG+AGG | 0.624055 | 7.4:+44435840 | MS.gene78222:CDS |
| TGCCATTGCAGAGATTCTGA+AGG | 0.625612 | 7.4:+44435504 | MS.gene78222:CDS |
| TGCCATGGACAGGTACCAGA+AGG | 0.626822 | 7.4:+44433053 | None:intergenic |
| GGTTCCTGACAGATAATGGT+GGG | 0.628649 | 7.4:+44436616 | MS.gene78222:intron |
| GCAACCTCTGAAACCAGCAC+AGG | 0.640267 | 7.4:+44436267 | MS.gene78222:CDS |
| ATTGACCTGAAGAAGCGAAG+TGG | 0.643111 | 7.4:-44433163 | None:intergenic |
| GGGTATGGAAATTATCAAGG+TGG | 0.649199 | 7.4:+44436470 | MS.gene78222:CDS |
| GTATTCTAATCGTGGCCGAG+GGG | 0.653433 | 7.4:+44436638 | MS.gene78222:CDS |
| TATTCTAATCGTGGCCGAGG+GGG | 0.657347 | 7.4:+44436639 | MS.gene78222:CDS |
| AATGGTGGGTATTCTAATCG+TGG | 0.658725 | 7.4:+44436630 | MS.gene78222:CDS |
| ATTGCAGTGTGGAAATGACT+CGG | 0.663461 | 7.4:+44435961 | MS.gene78222:intron |
| TGCAGTATCTTGGTGCAAAG+GGG | 0.673020 | 7.4:-44435794 | None:intergenic |
| TGGTTCCTGACAGATAATGG+TGG | 0.678431 | 7.4:+44436615 | MS.gene78222:intron |
| TTATCATCAGATAATACGGG+AGG | 0.684202 | 7.4:-44436716 | None:intergenic |
| GGATACGGCTATTACCAAGG+TGG | 0.753958 | 7.4:+44436491 | MS.gene78222:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAAGAACATATA+AGG | - | chr7.4:44435561-44435580 | None:intergenic | 10.0% |
| !! | AAAATATTATTAAGCAATAT+TGG | + | chr7.4:44433986-44434005 | MS.gene78222:intron | 10.0% |
| !! | AAATATTATTAAGCAATATT+GGG | + | chr7.4:44433987-44434006 | MS.gene78222:intron | 10.0% |
| !! | AGATTAAAATTATAAAAACT+TGG | - | chr7.4:44434931-44434950 | None:intergenic | 10.0% |
| !! | ATATATATTAAACATGTAAA+AGG | - | chr7.4:44435117-44435136 | None:intergenic | 10.0% |
| !!! | CATAATTTTTTTTTCTATTT+GGG | + | chr7.4:44435911-44435930 | MS.gene78222:intron | 10.0% |
| !! | AAAATTTCAAACAAAACTTA+CGG | - | chr7.4:44435874-44435893 | None:intergenic | 15.0% |
| !! | ACAATATAATAATAGCTAAA+GGG | - | chr7.4:44434462-44434481 | None:intergenic | 15.0% |
| !! | AGAATAAAAAACTTAAAATC+TGG | + | chr7.4:44435697-44435716 | MS.gene78222:intron | 15.0% |
| !! | ATTAACAAATAATAGCTAAA+GGG | + | chr7.4:44434554-44434573 | MS.gene78222:intron | 15.0% |
| !! | CCAAATAGAAAAAAAAATTA+TGG | - | chr7.4:44435913-44435932 | None:intergenic | 15.0% |
| !! | TACAATATAATAATAGCTAA+AGG | - | chr7.4:44434463-44434482 | None:intergenic | 15.0% |
| !! | TATATTAGCTATTCATTAAT+AGG | + | chr7.4:44436332-44436351 | MS.gene78222:intron | 15.0% |
| !! | TATTAACAAATAATAGCTAA+AGG | + | chr7.4:44434553-44434572 | MS.gene78222:intron | 15.0% |
| !!! | AAGTTTTTTATTCTAACTTT+TGG | - | chr7.4:44435691-44435710 | None:intergenic | 15.0% |
| !!! | CCATAATTTTTTTTTCTATT+TGG | + | chr7.4:44435910-44435929 | MS.gene78222:intron | 15.0% |
| !!! | GAATAAAAATGTTTTTTGAA+CGG | - | chr7.4:44435211-44435230 | None:intergenic | 15.0% |
| !!! | GTTAGTATGATATTTTTTAA+TGG | + | chr7.4:44434506-44434525 | MS.gene78222:intron | 15.0% |
| !!! | TTAAGTTTTTATTGAAGTTT+TGG | + | chr7.4:44434100-44434119 | MS.gene78222:intron | 15.0% |
| !! | AAAAATTCTTGAGCAATATT+GGG | + | chr7.4:44433874-44433893 | MS.gene78222:intron | 20.0% |
| !! | AAAACTACTAAATCACTTTA+AGG | + | chr7.4:44434409-44434428 | MS.gene78222:intron | 20.0% |
| !! | AAACTACTAAATCACTTTAA+GGG | + | chr7.4:44434410-44434429 | MS.gene78222:intron | 20.0% |
| !! | AAATACAAAACGTTATAAGA+TGG | - | chr7.4:44435418-44435437 | None:intergenic | 20.0% |
| !! | AAATTAAAGAACATATAAGG+AGG | - | chr7.4:44435558-44435577 | None:intergenic | 20.0% |
| !! | AAATTGGAGATGTTAAAATT+AGG | + | chr7.4:44434010-44434029 | MS.gene78222:intron | 20.0% |
| !! | AATTATCTTACTGCAAAAAT+AGG | - | chr7.4:44435350-44435369 | None:intergenic | 20.0% |
| !! | CAAGATCATGAAAATAATTA+CGG | - | chr7.4:44436053-44436072 | None:intergenic | 20.0% |
| !! | GATAATTCAAATACTGTAAT+TGG | + | chr7.4:44435363-44435382 | MS.gene78222:intron | 20.0% |
| !! | GTCAGAAAAATTGAAAATTA+TGG | - | chr7.4:44434961-44434980 | None:intergenic | 20.0% |
| !! | TAAAAATTCTTGAGCAATAT+TGG | + | chr7.4:44433873-44433892 | MS.gene78222:intron | 20.0% |
| !! | TACTGAAATAATAATCCATT+AGG | - | chr7.4:44434162-44434181 | None:intergenic | 20.0% |
| !! | TATTAAACATGTAAAAGGAA+CGG | - | chr7.4:44435112-44435131 | None:intergenic | 20.0% |
| !! | TGAAACTAATGTTTAAATTC+AGG | + | chr7.4:44435021-44435040 | MS.gene78222:intron | 20.0% |
| !!! | AAACATTTTTATTCTTACTG+TGG | + | chr7.4:44435217-44435236 | MS.gene78222:intron | 20.0% |
| !!! | AATTTTTTTTTCTATTTGGG+TGG | + | chr7.4:44435914-44435933 | MS.gene78222:intron | 20.0% |
| !!! | ATGATATTTTTTAATGGTCT+CGG | + | chr7.4:44434512-44434531 | MS.gene78222:intron | 20.0% |
| !!! | ATTGTTGATTAATGAAATGA+TGG | + | chr7.4:44433344-44433363 | MS.gene78222:intron | 20.0% |
| !!! | ATTTTTCTGACTTCAATATA+TGG | + | chr7.4:44434970-44434989 | MS.gene78222:intron | 20.0% |
| !!! | TAAAGGGTGTTATTTTTTAA+TGG | + | chr7.4:44434570-44434589 | MS.gene78222:intron | 20.0% |
| !!! | TAATTTCAGGTAAATGAAAT+AGG | - | chr7.4:44435324-44435343 | None:intergenic | 20.0% |
| !!! | TTGTAAGTTGAAACAAAATT+TGG | + | chr7.4:44434377-44434396 | MS.gene78222:intron | 20.0% |
| !!! | TTGTTGATTAATGAAATGAT+GGG | + | chr7.4:44433345-44433364 | MS.gene78222:intron | 20.0% |
| !!! | TTTGTTGTTTTTGTTTTTGT+GGG | + | chr7.4:44433502-44433521 | MS.gene78222:intron | 20.0% |
| !!! | TTTTGTTGTTTTTGTTTTTG+TGG | + | chr7.4:44433501-44433520 | MS.gene78222:intron | 20.0% |
| ! | AAACAATGCCTATGTTTAAA+AGG | + | chr7.4:44434190-44434209 | MS.gene78222:intron | 25.0% |
| ! | AACAATGCCTATGTTTAAAA+GGG | + | chr7.4:44434191-44434210 | MS.gene78222:intron | 25.0% |
| ! | AACCTTTAGATTTATTGAAG+AGG | - | chr7.4:44435666-44435685 | None:intergenic | 25.0% |
| ! | AACTACTAAATCACTTTAAG+GGG | + | chr7.4:44434411-44434430 | MS.gene78222:intron | 25.0% |
| ! | AACTTGAAAATAATTGGCAA+TGG | + | chr7.4:44435619-44435638 | MS.gene78222:intron | 25.0% |
| ! | ACCTTTAGATTTATTGAAGA+GGG | - | chr7.4:44435665-44435684 | None:intergenic | 25.0% |
| ! | ATTAAACATGTAAAAGGAAC+GGG | - | chr7.4:44435111-44435130 | None:intergenic | 25.0% |
| ! | ATTAAGCAATATTGGGAAAT+TGG | + | chr7.4:44433994-44434013 | MS.gene78222:intron | 25.0% |
| ! | ATTGTTGATATTCAACAACT+TGG | - | chr7.4:44435940-44435959 | None:intergenic | 25.0% |
| ! | ATTTGATAAACAGTTCAACA+CGG | + | chr7.4:44433799-44433818 | MS.gene78222:intron | 25.0% |
| ! | CAAAAATAGGTGATAATTTC+AGG | - | chr7.4:44435337-44435356 | None:intergenic | 25.0% |
| ! | CTGTTTATCAAATTAAAGCA+CGG | - | chr7.4:44433792-44433811 | None:intergenic | 25.0% |
| ! | CTTCTTTACAATAGATACTA+GGG | + | chr7.4:44434602-44434621 | MS.gene78222:intron | 25.0% |
| ! | GAAGGTAACTTGAAAATAAT+TGG | + | chr7.4:44435613-44435632 | MS.gene78222:intron | 25.0% |
| ! | GTCTATATGATTTCATGTTT+AGG | + | chr7.4:44436191-44436210 | MS.gene78222:intron | 25.0% |
| ! | TCTTATAATGCTGTAAATGA+AGG | + | chr7.4:44436292-44436311 | MS.gene78222:CDS | 25.0% |
| ! | TCTTCTTTACAATAGATACT+AGG | + | chr7.4:44434601-44434620 | MS.gene78222:intron | 25.0% |
| !! | CATATATCCCTTTTAAACAT+AGG | - | chr7.4:44434201-44434220 | None:intergenic | 25.0% |
| !! | TGTTGATGTTATTTAGAACT+TGG | + | chr7.4:44433426-44433445 | MS.gene78222:intron | 25.0% |
| !! | TTACGTTCTTTTTATTCAGT+TGG | + | chr7.4:44436074-44436093 | MS.gene78222:intron | 25.0% |
| !!! | ATTTTAATGACAAACTCAAG+TGG | - | chr7.4:44435270-44435289 | None:intergenic | 25.0% |
| !!! | TCATATTGATTTTCTGTGAT+TGG | + | chr7.4:44435741-44435760 | MS.gene78222:intron | 25.0% |
| !!! | TGTTTGAAATTTTAACGTTC+TGG | + | chr7.4:44435881-44435900 | MS.gene78222:intron | 25.0% |
| !!! | TTATATTTTGAATCCATTCC+TGG | + | chr7.4:44436145-44436164 | MS.gene78222:intron | 25.0% |
| AAATACTAGTCAAACAATCC+AGG | - | chr7.4:44436166-44436185 | None:intergenic | 30.0% | |
| AAATGGTTATGGGAGTTTAT+TGG | - | chr7.4:44434823-44434842 | None:intergenic | 30.0% | |
| AATAAACTCCCATAACCATT+TGG | + | chr7.4:44434822-44434841 | MS.gene78222:intron | 30.0% | |
| AATTGAACACAAATTCTCCT+GGG | + | chr7.4:44436021-44436040 | MS.gene78222:CDS | 30.0% | |
| ACTGAATTACCAAATGGTTA+TGG | - | chr7.4:44434834-44434853 | None:intergenic | 30.0% | |
| AGATGTGCTAAAAGTTAGAA+TGG | - | chr7.4:44436358-44436377 | None:intergenic | 30.0% | |
| ATACGAAGTTACAAACCTAA+TGG | + | chr7.4:44434144-44434163 | MS.gene78222:intron | 30.0% | |
| CAGGTAAAAATTTGGGAAAA+TGG | - | chr7.4:44433641-44433660 | None:intergenic | 30.0% | |
| CTGAATTACCAAATGGTTAT+GGG | - | chr7.4:44434833-44434852 | None:intergenic | 30.0% | |
| GAATGTATCAGATTAAAGCA+TGG | + | chr7.4:44433941-44433960 | MS.gene78222:intron | 30.0% | |
| GTACTATAATGCTAAAATCC+AGG | - | chr7.4:44436549-44436568 | None:intergenic | 30.0% | |
| GTCAACACAGGTAAAAATTT+GGG | - | chr7.4:44433648-44433667 | None:intergenic | 30.0% | |
| TATCAACAATTATTGCAGTG+TGG | + | chr7.4:44435950-44435969 | MS.gene78222:intron | 30.0% | |
| TATCCTACTGAATTACCAAA+TGG | - | chr7.4:44434840-44434859 | None:intergenic | 30.0% | |
| TCATACTAAACGCAATAATG+TGG | + | chr7.4:44433825-44433844 | MS.gene78222:intron | 30.0% | |
| TCCCTCTTCAATAAATCTAA+AGG | + | chr7.4:44435661-44435680 | MS.gene78222:intron | 30.0% | |
| TTCAGGTAAATGAAATAGGA+GGG | - | chr7.4:44435320-44435339 | None:intergenic | 30.0% | |
| ! | AAAAGTTTTTACTCTTGCGT+TGG | + | chr7.4:44434728-44434747 | MS.gene78222:intron | 30.0% |
| ! | ATTCACCATGTTTTCGTTTT+TGG | + | chr7.4:44433219-44433238 | MS.gene78222:intron | 30.0% |
| ! | TAACCATTTGGTAATTCAGT+AGG | + | chr7.4:44434834-44434853 | MS.gene78222:intron | 30.0% |
| ! | TAACGTTTTGTATTTCATCC+AGG | + | chr7.4:44435423-44435442 | MS.gene78222:intron | 30.0% |
| ! | TACTCAGGTTTCGTTTATTT+TGG | + | chr7.4:44433746-44433765 | MS.gene78222:intron | 30.0% |
| ! | TATCTTTTTCTAGACTCGTA+TGG | + | chr7.4:44436380-44436399 | MS.gene78222:intron | 30.0% |
| ! | TCTTGTTATAACAGCTTCTT+GGG | + | chr7.4:44436103-44436122 | MS.gene78222:intron | 30.0% |
| ! | TGTTATTTAGAACTTGGTAG+TGG | + | chr7.4:44433432-44433451 | MS.gene78222:intron | 30.0% |
| ! | TTCTTGTTATAACAGCTTCT+TGG | + | chr7.4:44436102-44436121 | MS.gene78222:intron | 30.0% |
| ! | TTTCAGGTAAATGAAATAGG+AGG | - | chr7.4:44435321-44435340 | None:intergenic | 30.0% |
| !! | AAGTTTACTTTTGTTGTGCT+TGG | + | chr7.4:44436595-44436614 | MS.gene78222:intron | 30.0% |
| !! | ACTCAGGTTTCGTTTATTTT+GGG | + | chr7.4:44433747-44433766 | MS.gene78222:intron | 30.0% |
| !! | GTGGCATTTTAAGAAATGTT+TGG | + | chr7.4:44433268-44433287 | MS.gene78222:intron | 30.0% |
| !! | TTCACCATGTTTTCGTTTTT+GGG | + | chr7.4:44433220-44433239 | MS.gene78222:intron | 30.0% |
| !!! | GAAGTTTTGGTTCTCAAATA+TGG | + | chr7.4:44434113-44434132 | MS.gene78222:intron | 30.0% |
| !!! | TAACTTTTTGGAATCTACTC+AGG | + | chr7.4:44433731-44433750 | MS.gene78222:intron | 30.0% |
| AAGGTACAAATTCTGAATCC+TGG | + | chr7.4:44436528-44436547 | MS.gene78222:intron | 35.0% | |
| ACTAAACGCAATAATGTGGA+TGG | + | chr7.4:44433829-44433848 | MS.gene78222:intron | 35.0% | |
| AGCAAAAGAGATTGTCTTGA+AGG | + | chr7.4:44435453-44435472 | MS.gene78222:CDS | 35.0% | |
| AGTTAGCATAACAGATGTGT+GGG | + | chr7.4:44435825-44435844 | MS.gene78222:CDS | 35.0% | |
| ATACTACAACACAGAAGGAA+AGG | - | chr7.4:44434320-44434339 | None:intergenic | 35.0% | |
| ATCTGATACACAGTTCAACA+TGG | - | chr7.4:44433912-44433931 | None:intergenic | 35.0% | |
| CGTCAACACAGGTAAAAATT+TGG | - | chr7.4:44433649-44433668 | None:intergenic | 35.0% | |
| CTGTGTATCAGATTAAAGCA+CGG | + | chr7.4:44433919-44433938 | MS.gene78222:intron | 35.0% | |
| GAATTGAACACAAATTCTCC+TGG | + | chr7.4:44436020-44436039 | MS.gene78222:CDS | 35.0% | |
| GGAAATTATCAAGGTGGATA+CGG | + | chr7.4:44436476-44436495 | MS.gene78222:CDS | 35.0% | |
| GGTGGATATGCAAATTATCA+AGG | + | chr7.4:44436509-44436528 | MS.gene78222:CDS | 35.0% | |
| GTAAGTCGTATGTCTGTTAT+GGG | + | chr7.4:44433707-44433726 | MS.gene78222:intron | 35.0% | |
| GTAAGTGATGTAGTTACGAA+TGG | - | chr7.4:44433142-44433161 | None:intergenic | 35.0% | |
| TAAGTCGTATGTCTGTTATG+GGG | + | chr7.4:44433708-44433727 | MS.gene78222:intron | 35.0% | |
| TCAATCTGCTTAAACAGAAG+AGG | + | chr7.4:44435767-44435786 | MS.gene78222:intron | 35.0% | |
| TCTGAAGGTAATTTCTTTGC+AGG | + | chr7.4:44435519-44435538 | MS.gene78222:intron | 35.0% | |
| TTGAATCTTGTCAGCATTTC+TGG | + | chr7.4:44433531-44433550 | MS.gene78222:intron | 35.0% | |
| TTTGATTGTTCAGCAGTAGA+TGG | - | chr7.4:44436226-44436245 | None:intergenic | 35.0% | |
| ! | AAAGGAGGTAAAAAGGTACA+AGG | - | chr7.4:44434302-44434321 | None:intergenic | 35.0% |
| ! | AAGGAGGTAAAAAGGTACAA+GGG | - | chr7.4:44434301-44434320 | None:intergenic | 35.0% |
| ! | ACTAAATCACTTTAAGGGGT+TGG | + | chr7.4:44434415-44434434 | MS.gene78222:intron | 35.0% |
| ! | CTTGTTATAACAGCTTCTTG+GGG | + | chr7.4:44436104-44436123 | MS.gene78222:intron | 35.0% |
| ! | GATAATTTGCATATCCACCT+TGG | - | chr7.4:44436508-44436527 | None:intergenic | 35.0% |
| ! | GGTTAGGGTTTTCTTTAGTT+AGG | + | chr7.4:44434347-44434366 | MS.gene78222:intron | 35.0% |
| ! | TCTGTTATGGGGTAACTTTT+TGG | + | chr7.4:44433719-44433738 | MS.gene78222:intron | 35.0% |
| !! | TAGCATATGTTTCTGGTAGA+AGG | + | chr7.4:44435595-44435614 | MS.gene78222:intron | 35.0% |
| !! | TGTAGTATGTGTGTTGGTTA+GGG | + | chr7.4:44434332-44434351 | MS.gene78222:intron | 35.0% |
| !! | TTGTAGTATGTGTGTTGGTT+AGG | + | chr7.4:44434331-44434350 | MS.gene78222:intron | 35.0% |
| !!! | CTCAGGTTTCGTTTATTTTG+GGG | + | chr7.4:44433748-44433767 | MS.gene78222:intron | 35.0% |
| !!! | TGATTGTGGTTGTTTTTGTG+TGG | + | chr7.4:44433249-44433268 | MS.gene78222:intron | 35.0% |
| AATAATTACGGAACTCACCC+AGG | - | chr7.4:44436041-44436060 | None:intergenic | 40.0% | |
| AATACCCACCATTATCTGTC+AGG | - | chr7.4:44436623-44436642 | None:intergenic | 40.0% | |
| AGAGATTGTCTTGAAGGCAA+TGG | + | chr7.4:44435459-44435478 | MS.gene78222:CDS | 40.0% | |
| AGAGCTACAAAAGAATGGCA+TGG | - | chr7.4:44434879-44434898 | None:intergenic | 40.0% | |
| ATACTGTAATTGGCACGTGT+TGG | + | chr7.4:44435373-44435392 | MS.gene78222:intron | 40.0% | |
| ATCTCAATCACCTTGTCAAC+TGG | + | chr7.4:44435996-44436015 | MS.gene78222:CDS | 40.0% | |
| ATTGCAGTGTGGAAATGACT+CGG | + | chr7.4:44435961-44435980 | MS.gene78222:intron | 40.0% | |
| CACACATACTACAACACAGA+AGG | - | chr7.4:44434325-44434344 | None:intergenic | 40.0% | |
| CACGTGTTGGAAACTATTTC+TGG | + | chr7.4:44435386-44435405 | MS.gene78222:intron | 40.0% | |
| CAGAAGGAAAGGAGGTAAAA+AGG | - | chr7.4:44434309-44434328 | None:intergenic | 40.0% | |
| CAGTTAGCATAACAGATGTG+TGG | + | chr7.4:44435824-44435843 | MS.gene78222:CDS | 40.0% | |
| CGTAAGTCGTATGTCTGTTA+TGG | + | chr7.4:44433706-44433725 | MS.gene78222:intron | 40.0% | |
| CTAGTCAAACAATCCAGGAA+TGG | - | chr7.4:44436161-44436180 | None:intergenic | 40.0% | |
| CTGTGTTGTAGTATGTGTGT+TGG | + | chr7.4:44434326-44434345 | MS.gene78222:intron | 40.0% | |
| GACAGTCTAGCATATGTTTC+TGG | + | chr7.4:44435588-44435607 | MS.gene78222:intron | 40.0% | |
| GAGATTGTCTTGAAGGCAAT+GGG | + | chr7.4:44435460-44435479 | MS.gene78222:CDS | 40.0% | |
| GCAACCCAAAAACGAAAACA+TGG | - | chr7.4:44433227-44433246 | None:intergenic | 40.0% | |
| GCATTATAAGAATCCTGTGC+TGG | - | chr7.4:44436283-44436302 | None:intergenic | 40.0% | |
| GCTGAAGAGCTACAAAAGAA+TGG | - | chr7.4:44434884-44434903 | None:intergenic | 40.0% | |
| GGATGGAGATGAACATTGTT+AGG | + | chr7.4:44433846-44433865 | MS.gene78222:intron | 40.0% | |
| GGGTATGGAAATTATCAAGG+TGG | + | chr7.4:44436470-44436489 | MS.gene78222:CDS | 40.0% | |
| GGTGGGTATGGAAATTATCA+AGG | + | chr7.4:44436467-44436486 | MS.gene78222:CDS | 40.0% | |
| GTTCAATTCTCCAGTTGACA+AGG | - | chr7.4:44436009-44436028 | None:intergenic | 40.0% | |
| TACCTTACACACGGTTCAAA+CGG | + | chr7.4:44434641-44434660 | MS.gene78222:intron | 40.0% | |
| TACCTTCAGAATCTCTGCAA+TGG | - | chr7.4:44435509-44435528 | None:intergenic | 40.0% | |
| TAGCTACAGTACCTTACACA+CGG | + | chr7.4:44434632-44434651 | MS.gene78222:intron | 40.0% | |
| TAGGAGGGACAAAATGTGAT+CGG | - | chr7.4:44435305-44435324 | None:intergenic | 40.0% | |
| TGACAAGGTGATTGAGATCA+TGG | - | chr7.4:44435994-44436013 | None:intergenic | 40.0% | |
| TGGGGAGGGAAAAAAATTGA+AGG | + | chr7.4:44436122-44436141 | MS.gene78222:intron | 40.0% | |
| TTATAACAGCTTCTTGGGGA+GGG | + | chr7.4:44436108-44436127 | MS.gene78222:intron | 40.0% | |
| ! | ACGGATCTCATTTTCGTTGA+TGG | - | chr7.4:44433103-44433122 | None:intergenic | 40.0% |
| ! | ATTGCAGTATCTTGGTGCAA+AGG | - | chr7.4:44435799-44435818 | None:intergenic | 40.0% |
| ! | CGGATCTCATTTTCGTTGAT+GGG | - | chr7.4:44433102-44433121 | None:intergenic | 40.0% |
| ! | TTGCAGTATCTTGGTGCAAA+GGG | - | chr7.4:44435798-44435817 | None:intergenic | 40.0% |
| !! | AATGGTGGGTATTCTAATCG+TGG | + | chr7.4:44436630-44436649 | MS.gene78222:CDS | 40.0% |
| !! | GTTTGGGTTTTTCAACCTTC+TGG | - | chr7.4:44433071-44433090 | None:intergenic | 40.0% |
| !! | TCTCTTTTGCTTGCTTTTCC+TGG | - | chr7.4:44435444-44435463 | None:intergenic | 40.0% |
| !! | TTGATGGGAGTTTCAGGTTT+GGG | - | chr7.4:44433087-44433106 | None:intergenic | 40.0% |
| !! | TTTTCGTTGATGGGAGTTTC+AGG | - | chr7.4:44433093-44433112 | None:intergenic | 40.0% |
| !!! | TTTTTGGGTTGCGTTGATTG+TGG | + | chr7.4:44433235-44433254 | MS.gene78222:intron | 40.0% |
| AACCGTTTGAACCGTGTGTA+AGG | - | chr7.4:44434646-44434665 | None:intergenic | 45.0% | |
| ATTGACCTGAAGAAGCGAAG+TGG | - | chr7.4:44433166-44433185 | None:intergenic | 45.0% | |
| CAGAGGTTGCTGCTGATAAT+TGG | - | chr7.4:44436257-44436276 | None:intergenic | 45.0% | |
| CTACAACACAGAAGGAAAGG+AGG | - | chr7.4:44434317-44434336 | None:intergenic | 45.0% | |
| CTGAGCTGATTGCAGTATCT+TGG | - | chr7.4:44435807-44435826 | None:intergenic | 45.0% | |
| GAAACACTGACACAGATACC+AGG | - | chr7.4:44433687-44433706 | None:intergenic | 45.0% | |
| GAGATCCGTATCACTACTCA+AGG | + | chr7.4:44433114-44433133 | MS.gene78222:CDS | 45.0% | |
| GATTCTGTCATCTGACGATG+AGG | + | chr7.4:44434759-44434778 | MS.gene78222:intron | 45.0% | |
| GCTTGGTTCCTGACAGATAA+TGG | + | chr7.4:44436612-44436631 | MS.gene78222:intron | 45.0% | |
| GGTACAAGACCCTCTTCAAT+GGG | - | chr7.4:44435853-44435872 | None:intergenic | 45.0% | |
| GTGGTTATGGCTATCAAGGT+GGG | + | chr7.4:44436450-44436469 | MS.gene78222:CDS | 45.0% | |
| GTTATAACAGCTTCTTGGGG+AGG | + | chr7.4:44436107-44436126 | MS.gene78222:intron | 45.0% | |
| TAGAGGGAGAGGTAGGAATT+GGG | + | chr7.4:44436421-44436440 | MS.gene78222:intron | 45.0% | |
| TATGGCTATCAAGGTGGGTA+TGG | + | chr7.4:44436455-44436474 | MS.gene78222:CDS | 45.0% | |
| TGCCATTGCAGAGATTCTGA+AGG | + | chr7.4:44435504-44435523 | MS.gene78222:CDS | 45.0% | |
| TGCTGCTGATAATTGGAGTG+TGG | - | chr7.4:44436250-44436269 | None:intergenic | 45.0% | |
| ! | GGTAAAAAGGTACAAGGGTG+TGG | - | chr7.4:44434296-44434315 | None:intergenic | 45.0% |
| ! | GGTTCCTGACAGATAATGGT+GGG | + | chr7.4:44436616-44436635 | MS.gene78222:intron | 45.0% |
| ! | TGCAGTATCTTGGTGCAAAG+GGG | - | chr7.4:44435797-44435816 | None:intergenic | 45.0% |
| ! | TGGTTCCTGACAGATAATGG+TGG | + | chr7.4:44436615-44436634 | MS.gene78222:intron | 45.0% |
| !! | GTTGATGGGAGTTTCAGGTT+TGG | - | chr7.4:44433088-44433107 | None:intergenic | 45.0% |
| AATTGGGGAAGGGGTGGTTA+TGG | + | chr7.4:44436437-44436456 | MS.gene78222:intron | 50.0% | |
| AGAGGGAGAGGTAGGAATTG+GGG | + | chr7.4:44436422-44436441 | MS.gene78222:intron | 50.0% | |
| AGAGGTAGGAATTGGGGAAG+GGG | + | chr7.4:44436428-44436447 | MS.gene78222:intron | 50.0% | |
| AGGGGTGGTTATGGCTATCA+AGG | + | chr7.4:44436446-44436465 | MS.gene78222:intron | 50.0% | |
| CAACACTGACACGTCAACAC+AGG | - | chr7.4:44433660-44433679 | None:intergenic | 50.0% | |
| CACGCCTTCATCAGAAGTTC+CGG | - | chr7.4:44433587-44433606 | None:intergenic | 50.0% | |
| CGGTACAAGACCCTCTTCAA+TGG | - | chr7.4:44435854-44435873 | None:intergenic | 50.0% | |
| GAGAGGTAGGAATTGGGGAA+GGG | + | chr7.4:44436427-44436446 | MS.gene78222:intron | 50.0% | |
| GGATACGGCTATTACCAAGG+TGG | + | chr7.4:44436491-44436510 | MS.gene78222:CDS | 50.0% | |
| GGTATTCTAATCGTGGCCGA+GGG | + | chr7.4:44436637-44436656 | MS.gene78222:CDS | 50.0% | |
| GGTGGATACGGCTATTACCA+AGG | + | chr7.4:44436488-44436507 | MS.gene78222:CDS | 50.0% | |
| GGTGGTTATGGCTATCAAGG+TGG | + | chr7.4:44436449-44436468 | MS.gene78222:CDS | 50.0% | |
| GTAGAGGGAGAGGTAGGAAT+TGG | + | chr7.4:44436420-44436439 | MS.gene78222:intron | 50.0% | |
| GTATTCTAATCGTGGCCGAG+GGG | + | chr7.4:44436638-44436657 | MS.gene78222:CDS | 50.0% | |
| TATTCTAATCGTGGCCGAGG+GGG | + | chr7.4:44436639-44436658 | MS.gene78222:CDS | 50.0% | |
| TGGCGCCTTGAGTAGTGATA+CGG | - | chr7.4:44433122-44433141 | None:intergenic | 50.0% | |
| TGTTGCATGCTCTGTAGCAC+CGG | + | chr7.4:44433565-44433584 | MS.gene78222:intron | 50.0% | |
| TTACGCCACTTCGCTTCTTC+AGG | + | chr7.4:44433158-44433177 | MS.gene78222:CDS | 50.0% | |
| TTTCTAGACTCGTATGGCCG+AGG | + | chr7.4:44436386-44436405 | MS.gene78222:intron | 50.0% | |
| ! | AGCACCGGAACTTCTGATGA+AGG | + | chr7.4:44433580-44433599 | MS.gene78222:intron | 50.0% |
| !! | GAATCCTGTGCTGGTTTCAG+AGG | - | chr7.4:44436274-44436293 | None:intergenic | 50.0% |
| ACGTGTCAGTGTTGTGTGCC+TGG | + | chr7.4:44433666-44433685 | MS.gene78222:intron | 55.0% | |
| GGAGAGGTAGGAATTGGGGA+AGG | + | chr7.4:44436426-44436445 | MS.gene78222:intron | 55.0% | |
| GGGTATTCTAATCGTGGCCG+AGG | + | chr7.4:44436636-44436655 | MS.gene78222:CDS | 55.0% | |
| GTGTGGGAGCCCATTGAAGA+GGG | + | chr7.4:44435841-44435860 | MS.gene78222:CDS | 55.0% | |
| TGTGTGGGAGCCCATTGAAG+AGG | + | chr7.4:44435840-44435859 | MS.gene78222:CDS | 55.0% | |
| !! | GCAACCTCTGAAACCAGCAC+AGG | + | chr7.4:44436267-44436286 | MS.gene78222:CDS | 55.0% |
| CTCTACCTCGACCACGACCT+CGG | - | chr7.4:44436406-44436425 | None:intergenic | 60.0% | |
| GAGGTCGTGGTCGAGGTAGA+GGG | + | chr7.4:44436405-44436424 | MS.gene78222:intron | 60.0% | |
| GGTAGGAATTGGGGAAGGGG+TGG | + | chr7.4:44436431-44436450 | MS.gene78222:intron | 60.0% | |
| GTCGAGGTAGAGGGAGAGGT+AGG | + | chr7.4:44436414-44436433 | MS.gene78222:intron | 60.0% | |
| CGAGGTCGTGGTCGAGGTAG+AGG | + | chr7.4:44436404-44436423 | MS.gene78222:intron | 65.0% | |
| CGTGGTCGAGGTAGAGGGAG+AGG | + | chr7.4:44436410-44436429 | MS.gene78222:intron | 65.0% | |
| GACTCGTATGGCCGAGGTCG+TGG | + | chr7.4:44436392-44436411 | MS.gene78222:intron | 65.0% | |
| GAGGTCGAGGCAGAGGTTGG+GGG | + | chr7.4:44436661-44436680 | MS.gene78222:CDS | 65.0% | |
| GGAGGTCGAGGCAGAGGTTG+GGG | + | chr7.4:44436660-44436679 | MS.gene78222:CDS | 65.0% | |
| GGGAGGTCGAGGCAGAGGTT+GGG | + | chr7.4:44436659-44436678 | MS.gene78222:CDS | 65.0% | |
| TATGGCCGAGGTCGTGGTCG+AGG | + | chr7.4:44436398-44436417 | MS.gene78222:intron | 65.0% | |
| TCTAATCGTGGCCGAGGGGG+AGG | + | chr7.4:44436642-44436661 | MS.gene78222:CDS | 65.0% | |
| !! | GGCAGAGGTTGGGGGTATCG+TGG | + | chr7.4:44436669-44436688 | MS.gene78222:CDS | 65.0% |
| CTCTGCCTCGACCTCCCCCT+CGG | - | chr7.4:44436656-44436675 | None:intergenic | 70.0% | |
| GGGGAGGTCGAGGCAGAGGT+TGG | + | chr7.4:44436658-44436677 | MS.gene78222:CDS | 70.0% | |
| CGAGGGGGAGGTCGAGGCAG+AGG | + | chr7.4:44436654-44436673 | MS.gene78222:CDS | 75.0% | |
| ! | CGTGGCCGAGGGGGAGGTCG+AGG | + | chr7.4:44436648-44436667 | MS.gene78222:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 44433057 | 44436732 | 44433057 | ID=MS.gene78222 |
| chr7.4 | mRNA | 44433057 | 44436732 | 44433057 | ID=MS.gene78222.t1;Parent=MS.gene78222 |
| chr7.4 | exon | 44433057 | 44433179 | 44433057 | ID=MS.gene78222.t1.exon1;Parent=MS.gene78222.t1 |
| chr7.4 | CDS | 44433057 | 44433179 | 44433057 | ID=cds.MS.gene78222.t1;Parent=MS.gene78222.t1 |
| chr7.4 | exon | 44435445 | 44435525 | 44435445 | ID=MS.gene78222.t1.exon2;Parent=MS.gene78222.t1 |
| chr7.4 | CDS | 44435445 | 44435525 | 44435445 | ID=cds.MS.gene78222.t1;Parent=MS.gene78222.t1 |
| chr7.4 | exon | 44435784 | 44435872 | 44435784 | ID=MS.gene78222.t1.exon3;Parent=MS.gene78222.t1 |
| chr7.4 | CDS | 44435784 | 44435872 | 44435784 | ID=cds.MS.gene78222.t1;Parent=MS.gene78222.t1 |
| chr7.4 | exon | 44435968 | 44436042 | 44435968 | ID=MS.gene78222.t1.exon4;Parent=MS.gene78222.t1 |
| chr7.4 | CDS | 44435968 | 44436042 | 44435968 | ID=cds.MS.gene78222.t1;Parent=MS.gene78222.t1 |
| chr7.4 | exon | 44436213 | 44436313 | 44436213 | ID=MS.gene78222.t1.exon5;Parent=MS.gene78222.t1 |
| chr7.4 | CDS | 44436213 | 44436313 | 44436213 | ID=cds.MS.gene78222.t1;Parent=MS.gene78222.t1 |
| chr7.4 | exon | 44436448 | 44436530 | 44436448 | ID=MS.gene78222.t1.exon6;Parent=MS.gene78222.t1 |
| chr7.4 | CDS | 44436448 | 44436530 | 44436448 | ID=cds.MS.gene78222.t1;Parent=MS.gene78222.t1 |
| chr7.4 | exon | 44436628 | 44436732 | 44436628 | ID=MS.gene78222.t1.exon7;Parent=MS.gene78222.t1 |
| chr7.4 | CDS | 44436628 | 44436732 | 44436628 | ID=cds.MS.gene78222.t1;Parent=MS.gene78222.t1 |
| Gene Sequence |
| Protein sequence |
