AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78342

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78342.t1 MTR_7g113860 97.668 386 9 0 1 386 1 386 0.0 783
MS.gene78342.t1 MTR_7g113860 92.055 365 27 2 23 386 17 380 0.0 689
MS.gene78342.t1 MTR_7g113860 97.705 305 7 0 82 386 8 312 0.0 620
MS.gene78342.t1 MTR_1g082390 75.683 366 86 2 11 375 7 370 0.0 573
MS.gene78342.t1 MTR_8g089805 45.968 372 191 7 10 375 15 382 5.17e-108 323
MS.gene78342.t1 MTR_1g030340 45.745 376 187 9 14 378 16 385 8.25e-108 322
MS.gene78342.t1 MTR_1g030220 45.187 374 194 7 10 378 15 382 9.16e-106 317
MS.gene78342.t1 MTR_7g087190 43.583 374 196 8 16 378 20 389 1.31e-103 311
MS.gene78342.t1 MTR_7g111780 45.977 348 163 7 35 380 36 360 1.76e-102 308
MS.gene78342.t1 MTR_1g082410 45.780 391 105 9 11 380 6 310 8.58e-98 293
MS.gene78342.t1 MTR_1g030230 44.054 370 192 10 11 373 8 369 1.08e-96 293
MS.gene78342.t1 MTR_1g030275 43.817 372 192 10 11 375 15 376 8.94e-96 291
MS.gene78342.t1 MTR_7g033165 42.061 359 193 9 22 372 19 370 1.25e-94 288
MS.gene78342.t1 MTR_6g007090 41.775 383 196 8 9 375 2 373 6.36e-94 286
MS.gene78342.t1 MTR_1g030268 45.584 351 174 10 32 375 37 377 2.01e-92 283
MS.gene78342.t1 MTR_7g033155 39.896 386 205 7 8 372 11 390 1.01e-89 276
MS.gene78342.t1 MTR_7g033150 39.572 374 204 8 16 373 10 377 2.78e-87 270
MS.gene78342.t1 MTR_8g089805 45.763 295 151 6 87 375 23 314 1.98e-84 260
MS.gene78342.t1 MTR_8g038680 38.684 380 206 10 9 375 2 367 1.30e-83 259
MS.gene78342.t1 MTR_6g007095 41.039 385 194 10 9 373 2 373 3.22e-83 268
MS.gene78342.t1 MTR_6g007095 40.312 320 161 7 59 372 393 688 1.13e-65 221
MS.gene78342.t1 MTR_7g116870 37.302 378 224 6 1 374 1 369 7.55e-82 255
MS.gene78342.t1 MTR_7g111780 45.161 279 128 8 104 380 6 261 2.66e-79 245
MS.gene78342.t1 MTR_6g007100 39.785 372 198 10 9 373 2 354 5.27e-77 242
MS.gene78342.t1 MTR_8g028160 38.983 354 195 8 32 374 33 376 4.72e-76 241
MS.gene78342.t1 MTR_1g030265 44.407 295 152 8 85 373 54 342 1.36e-73 233
MS.gene78342.t1 MTR_7g033165 41.754 285 155 7 22 298 19 300 1.39e-69 221
MS.gene78342.t1 MTR_8g012540 37.752 347 195 9 9 345 2 337 8.16e-67 215
MS.gene78342.t1 MTR_1g030268 43.066 274 142 9 32 298 37 303 1.07e-61 202
MS.gene78342.t1 MTR_4g104240 31.967 366 210 10 33 385 37 376 2.65e-48 168
MS.gene78342.t1 MTR_2g043980 32.461 382 204 13 9 373 8 352 1.14e-47 166
MS.gene78342.t1 MTR_2g015590 31.044 364 206 10 33 375 29 368 2.35e-47 166
MS.gene78342.t1 MTR_2g015670 31.755 359 211 12 25 375 21 353 1.86e-46 162
MS.gene78342.t1 MTR_2g015650 29.870 385 234 10 6 374 2 366 1.51e-45 160
MS.gene78342.t1 MTR_2g079090 30.548 383 212 11 9 372 2 349 2.67e-45 159
MS.gene78342.t1 MTR_3g463930 32.143 364 215 13 26 372 37 385 1.12e-44 159
MS.gene78342.t1 MTR_3g069780 31.165 369 206 15 25 372 20 361 1.14e-44 158
MS.gene78342.t1 MTR_3g438030 31.165 369 206 15 25 372 20 361 1.73e-44 158
MS.gene78342.t1 MTR_2g079080 30.548 383 212 11 9 372 2 349 2.51e-44 157
MS.gene78342.t1 MTR_3g463960 31.593 364 210 13 26 372 37 378 2.62e-44 158
MS.gene78342.t1 MTR_3g463950 31.593 364 210 13 26 372 37 378 2.62e-44 158
MS.gene78342.t1 MTR_3g463970 31.593 364 210 13 26 372 37 378 2.62e-44 158
MS.gene78342.t1 MTR_3g463940 31.593 364 210 13 26 372 37 378 2.62e-44 158
MS.gene78342.t1 MTR_0029s0050 30.548 383 212 11 9 372 2 349 8.17e-44 155
MS.gene78342.t1 MTR_0029s0100 30.548 383 212 11 9 372 2 349 2.05e-43 154
MS.gene78342.t1 MTR_2g015580 30.748 361 214 12 32 376 44 384 2.35e-43 155
MS.gene78342.t1 MTR_2g015630 29.114 395 233 13 3 376 2 370 1.27e-42 153
MS.gene78342.t1 MTR_3g448360 30.848 389 215 15 9 372 2 361 1.00e-41 150
MS.gene78342.t1 MTR_2g033930 29.333 375 225 12 8 371 6 351 3.21e-38 141
MS.gene78342.t1 MTR_3g069520 30.645 372 202 16 25 372 20 359 5.20e-38 140
MS.gene78342.t1 MTR_4g122200 28.610 367 223 11 17 371 17 356 5.92e-34 129
MS.gene78342.t1 MTR_8g014910 29.708 377 222 14 1 365 2 347 2.89e-32 125
MS.gene78342.t1 MTR_2g044100 28.457 376 228 13 11 370 14 364 3.14e-32 125
MS.gene78342.t1 MTR_3g098270 30.659 349 201 12 33 367 32 353 2.66e-31 122
MS.gene78342.t1 MTR_5g009100 27.457 346 211 12 37 370 48 365 5.00e-30 119
MS.gene78342.t1 MTR_5g022630 26.984 378 234 14 10 371 14 365 5.12e-30 119
MS.gene78342.t1 MTR_2g033920 27.704 379 209 12 18 371 18 356 9.15e-30 118
MS.gene78342.t1 MTR_8g031390 28.448 348 219 11 35 377 37 359 1.12e-29 118
MS.gene78342.t1 MTR_3g114090 27.500 360 220 12 11 356 9 341 1.42e-29 117
MS.gene78342.t1 MTR_1g025700 29.428 367 218 14 11 365 26 363 1.63e-29 117
MS.gene78342.t1 MTR_8g079050 28.133 391 221 15 9 372 10 367 2.80e-29 117
MS.gene78342.t1 MTR_5g084750 27.596 366 222 14 11 365 11 344 3.03e-29 116
MS.gene78342.t1 MTR_3g114120 28.986 345 204 12 33 365 45 360 7.80e-29 115
MS.gene78342.t1 MTR_8g022790 29.310 348 192 11 35 367 37 345 8.49e-29 115
MS.gene78342.t1 MTR_3g082830 27.246 345 209 12 34 365 37 352 9.20e-29 115
MS.gene78342.t1 MTR_1g025780 27.297 370 223 15 12 365 14 353 1.33e-28 115
MS.gene78342.t1 MTR_2g015080 27.688 372 224 13 12 363 15 361 3.52e-28 114
MS.gene78342.t1 MTR_8g022810 28.986 345 204 13 35 366 41 357 6.11e-28 113
MS.gene78342.t1 MTR_8g075220 28.090 356 213 13 32 371 37 365 6.50e-28 113
MS.gene78342.t1 MTR_8g075200 28.612 353 210 14 32 371 38 361 9.37e-28 113
MS.gene78342.t1 MTR_2g100620 28.736 348 203 14 34 366 30 347 9.98e-28 112
MS.gene78342.t1 MTR_8g031430 28.280 343 206 14 35 367 37 349 1.02e-27 112
MS.gene78342.t1 MTR_5g074270 29.870 385 191 16 11 362 8 346 1.05e-27 112
MS.gene78342.t1 MTR_4g056160 26.099 364 215 13 34 381 26 351 1.47e-27 112
MS.gene78342.t1 MTR_7g116570 28.451 355 206 13 35 372 34 357 1.51e-27 112
MS.gene78342.t1 MTR_2g015590 29.371 286 167 7 33 298 29 299 1.56e-27 111
MS.gene78342.t1 MTR_1g025720 26.531 343 211 12 32 362 34 347 2.66e-27 111
MS.gene78342.t1 MTR_3g464730 26.685 371 225 12 11 365 4 343 2.80e-27 111
MS.gene78342.t1 MTR_1g025680 26.346 353 214 13 34 371 33 354 4.48e-27 112
MS.gene78342.t1 MTR_8g031420 26.957 345 214 11 35 370 35 350 5.01e-27 110
MS.gene78342.t1 MTR_1g025760 26.016 369 232 13 12 365 52 394 2.79e-26 109
MS.gene78342.t1 MTR_3g435540 27.078 373 214 15 10 365 6 337 3.42e-26 108
MS.gene78342.t1 MTR_5g084770 26.648 364 230 11 13 365 6 343 4.79e-26 107
MS.gene78342.t1 MTR_7g116520 28.000 375 217 14 9 367 13 350 2.17e-25 106
MS.gene78342.t1 MTR_8g075230 27.479 353 210 14 34 371 35 356 2.67e-25 105
MS.gene78342.t1 MTR_2g043990 30.303 297 156 10 9 290 70 330 2.98e-25 105
MS.gene78342.t1 MTR_8g087890 26.359 368 220 12 34 384 30 363 4.63e-25 105
MS.gene78342.t1 MTR_2g084585 28.080 349 211 14 34 370 29 349 9.48e-25 103
MS.gene78342.t1 MTR_1g025910 30.255 314 185 13 59 365 62 348 1.40e-24 103
MS.gene78342.t1 MTR_5g084790 24.668 377 230 13 8 365 5 346 1.86e-24 103
MS.gene78342.t1 MTR_4g087985 26.415 371 227 17 11 363 15 357 8.23e-24 101
MS.gene78342.t1 MTR_0565s0010 25.323 387 235 13 9 380 10 357 1.51e-23 100
MS.gene78342.t1 MTR_8g031400 26.316 342 220 12 35 370 37 352 1.94e-23 100
MS.gene78342.t1 MTR_3g052490 26.479 355 217 10 34 372 31 357 2.48e-23 100
MS.gene78342.t1 MTR_4g108690 27.273 341 208 12 37 365 29 341 1.38e-22 98.2
MS.gene78342.t1 MTR_8g031390 28.731 268 170 8 59 326 65 311 1.39e-22 97.4
MS.gene78342.t1 MTR_0009s0250 27.401 354 212 14 34 378 32 349 1.47e-22 97.8
MS.gene78342.t1 MTR_5g078210 26.344 372 219 14 14 366 3 338 4.42e-22 96.7
MS.gene78342.t1 MTR_8g074570 26.842 380 225 13 8 367 10 356 7.07e-22 96.3
MS.gene78342.t1 MTR_5g022640 26.496 351 217 13 34 371 42 364 1.05e-21 95.9
MS.gene78342.t1 MTR_7g008060 24.870 386 233 14 1 372 1 343 1.48e-21 95.1
MS.gene78342.t1 MTR_3g052580 24.930 357 219 12 34 372 27 352 1.79e-21 95.5
MS.gene78342.t1 MTR_3g052480 25.419 358 218 12 34 372 32 359 1.83e-21 95.1
MS.gene78342.t1 MTR_4g056280 27.222 360 222 11 18 365 13 344 2.61e-21 94.4
MS.gene78342.t1 MTR_3g052580 24.930 357 219 12 34 372 26 351 3.28e-21 94.7
MS.gene78342.t1 MTR_3g024510 23.747 379 248 9 10 380 17 362 1.18e-20 92.8
MS.gene78342.t1 MTR_5g093090 25.770 357 217 11 34 372 27 353 1.62e-20 92.4
MS.gene78342.t1 MTR_4g035353 23.243 370 249 10 11 371 8 351 2.10e-20 92.0
MS.gene78342.t1 MTR_3g005660 26.420 352 221 12 34 372 35 361 3.37e-20 91.3
MS.gene78342.t1 MTR_7g116500 24.352 386 241 14 6 372 3 356 7.59e-20 90.5
MS.gene78342.t1 MTR_1g079530 25.995 377 219 15 13 367 1 339 8.01e-20 90.1
MS.gene78342.t1 MTR_3g023220 27.566 341 186 13 34 358 32 327 3.13e-19 88.6
MS.gene78342.t1 MTR_2g033920 27.451 306 169 10 18 298 18 295 6.27e-19 87.0
MS.gene78342.t1 MTR_4g019880 24.607 382 235 13 6 367 2 350 7.58e-19 87.4
MS.gene78342.t1 MTR_7g116510 25.815 368 228 12 16 368 6 343 1.01e-18 87.0
MS.gene78342.t1 MTR_1g024890 25.434 346 216 11 35 367 32 348 1.50e-18 86.7
MS.gene78342.t1 MTR_3g005650 26.087 345 218 8 32 368 27 342 2.22e-18 85.9
MS.gene78342.t1 MTR_5g083040 26.190 336 207 13 34 354 31 340 1.10e-17 84.0
MS.gene78342.t1 MTR_6g021530 25.532 329 200 11 59 372 55 353 1.21e-17 84.0
MS.gene78342.t1 MTR_2g461580 21.958 378 243 9 10 375 6 343 2.63e-17 82.8
MS.gene78342.t1 MTR_8g012520 34.532 139 55 3 169 306 8 111 3.26e-17 78.2
MS.gene78342.t1 MTR_2g058390 54.688 64 26 2 165 226 7 69 1.21e-16 74.3
MS.gene78342.t1 MTR_8g022810 32.386 176 99 6 60 228 70 232 2.80e-16 79.3
MS.gene78342.t1 MTR_5g074210 30.625 160 86 4 207 362 64 202 3.13e-15 74.7
MS.gene78342.t1 MTR_5g078210 26.667 300 181 10 17 298 6 284 7.16e-15 75.5
MS.gene78342.t1 MTR_2g017925 24.633 341 204 13 34 361 32 332 2.24e-14 74.3
MS.gene78342.t1 MTR_8g074560 25.131 382 227 16 10 368 8 353 6.26e-14 72.8
MS.gene78342.t1 MTR_2g017955 20.765 366 243 9 11 364 9 339 7.98e-14 72.8
MS.gene78342.t1 MTR_2g017875 24.784 347 200 14 34 361 33 337 2.44e-13 70.9
MS.gene78342.t1 MTR_5g093090 25.806 279 178 8 34 298 27 290 1.62e-12 68.2
MS.gene78342.t1 MTR_1108s0010 28.395 162 99 3 209 370 64 208 6.64e-12 65.1
MS.gene78342.t1 MTR_5g087690 23.796 353 225 14 33 376 48 365 1.91e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78342.t1 AT1G54790 72.776 371 101 0 16 386 12 382 0.0 594
MS.gene78342.t1 AT1G54790 68.010 397 101 1 16 386 12 408 0.0 580
MS.gene78342.t1 AT1G54790 71.504 379 106 2 9 386 6 383 0.0 578
MS.gene78342.t1 AT3G05180 65.103 341 117 2 32 371 33 372 4.37e-163 462
MS.gene78342.t1 AT1G09390 48.246 342 159 6 34 373 36 361 3.78e-108 322
MS.gene78342.t1 AT1G56670 47.801 341 162 6 34 373 39 364 2.70e-107 320
MS.gene78342.t1 AT3G26430 43.200 375 201 8 11 377 5 375 1.96e-100 303
MS.gene78342.t1 AT3G62280 44.868 341 168 6 34 372 35 357 1.92e-97 295
MS.gene78342.t1 AT5G14450 40.483 373 210 7 7 373 13 379 8.61e-96 291
MS.gene78342.t1 AT1G67830 41.813 342 189 7 32 367 27 364 2.40e-94 287
MS.gene78342.t1 AT3G27950 44.355 372 186 7 10 374 7 364 7.60e-90 276
MS.gene78342.t1 AT4G01130 38.583 381 220 7 1 374 1 374 9.79e-82 255
MS.gene78342.t1 AT1G56670 46.992 266 133 4 34 298 39 297 5.20e-76 238
MS.gene78342.t1 AT3G62280 42.804 271 143 4 34 302 35 295 6.05e-69 219
MS.gene78342.t1 AT4G01130 37.586 290 175 4 89 374 1 288 1.49e-60 197
MS.gene78342.t1 AT1G28610 33.148 359 204 11 32 374 28 366 4.04e-50 173
MS.gene78342.t1 AT1G28600 31.538 390 216 16 8 374 5 366 4.35e-50 173
MS.gene78342.t1 AT2G27360 31.538 390 227 13 5 375 3 371 5.84e-50 173
MS.gene78342.t1 AT4G01130 36.066 305 181 7 1 298 1 298 1.07e-49 171
MS.gene78342.t1 AT1G28580 32.570 393 210 16 10 374 8 373 3.05e-47 166
MS.gene78342.t1 AT1G31550 33.425 362 199 15 32 374 33 371 3.30e-47 166
MS.gene78342.t1 AT3G48460 30.130 385 224 12 12 376 13 372 3.71e-47 165
MS.gene78342.t1 AT1G28650 30.026 383 233 12 9 374 9 373 2.29e-44 158
MS.gene78342.t1 AT1G31550 32.687 361 200 16 32 374 33 368 4.38e-44 157
MS.gene78342.t1 AT1G28570 31.152 382 226 15 11 374 8 370 5.57e-44 157
MS.gene78342.t1 AT1G28590 31.680 363 205 14 32 374 33 372 1.24e-43 156
MS.gene78342.t1 AT1G28670 31.496 381 217 13 16 374 14 372 4.53e-42 152
MS.gene78342.t1 AT1G28640 30.446 381 220 12 16 374 14 371 3.28e-41 149
MS.gene78342.t1 AT5G45910 29.367 395 225 13 9 375 4 372 3.80e-41 149
MS.gene78342.t1 AT1G28660 31.593 383 213 14 16 374 14 371 1.28e-40 148
MS.gene78342.t1 AT1G28660 31.152 382 215 14 16 374 14 370 5.73e-40 146
MS.gene78342.t1 AT1G28580 31.290 310 177 13 79 374 5 292 5.14e-32 123
MS.gene78342.t1 AT4G10950 26.891 357 207 12 34 371 70 391 1.29e-31 124
MS.gene78342.t1 AT5G15720 29.661 354 207 12 34 372 29 355 1.03e-30 120
MS.gene78342.t1 AT5G22810 30.086 349 207 13 34 370 33 356 3.02e-30 119
MS.gene78342.t1 AT3G16370 28.035 346 216 10 34 370 29 350 4.99e-30 119
MS.gene78342.t1 AT2G23540 29.114 316 178 12 68 367 86 371 1.42e-29 118
MS.gene78342.t1 AT2G04570 25.946 370 230 12 14 369 7 346 1.91e-29 117
MS.gene78342.t1 AT1G20120 28.242 347 205 11 33 365 76 392 1.02e-28 116
MS.gene78342.t1 AT2G40250 28.406 345 201 11 35 362 36 351 1.24e-28 115
MS.gene78342.t1 AT4G10950 26.331 357 205 13 34 371 70 387 1.80e-28 115
MS.gene78342.t1 AT1G28570 31.579 228 142 9 152 374 80 298 5.09e-28 112
MS.gene78342.t1 AT5G42170 27.353 340 214 11 33 365 48 361 1.17e-27 112
MS.gene78342.t1 AT1G28570 32.381 210 129 8 169 374 7 207 8.27e-27 107
MS.gene78342.t1 AT5G03810 26.163 344 215 11 34 365 29 345 1.16e-26 109
MS.gene78342.t1 AT2G42990 27.348 362 220 13 14 363 10 340 2.23e-26 108
MS.gene78342.t1 AT1G20132 28.571 350 205 13 34 369 60 378 2.89e-26 108
MS.gene78342.t1 AT3G14225 30.172 348 184 16 60 386 66 375 5.54e-26 108
MS.gene78342.t1 AT4G26790 26.211 351 207 12 33 365 27 343 5.65e-26 107
MS.gene78342.t1 AT4G26790 26.211 351 207 12 33 365 27 343 5.65e-26 107
MS.gene78342.t1 AT3G14225 30.523 344 184 14 60 386 66 371 9.50e-26 107
MS.gene78342.t1 AT1G59406 27.869 366 227 14 9 365 4 341 1.41e-25 106
MS.gene78342.t1 AT1G59030 27.869 366 227 14 9 365 4 341 1.41e-25 106
MS.gene78342.t1 AT1G58725 27.869 366 227 14 9 365 4 341 1.41e-25 106
MS.gene78342.t1 AT3G53100 27.566 341 213 12 34 365 28 343 1.51e-25 106
MS.gene78342.t1 AT5G63170 27.019 359 212 11 9 356 2 321 1.77e-25 105
MS.gene78342.t1 AT1G29670 25.789 380 235 13 14 380 10 355 2.36e-25 105
MS.gene78342.t1 AT5G08460 29.167 360 201 13 33 371 47 373 2.72e-25 106
MS.gene78342.t1 AT5G40990 29.243 383 235 14 13 386 16 371 3.64e-25 105
MS.gene78342.t1 AT1G75890 27.647 340 211 12 34 363 46 360 4.07e-25 105
MS.gene78342.t1 AT1G29670 25.789 380 235 13 14 380 78 423 4.57e-25 106
MS.gene78342.t1 AT5G45950 25.429 350 215 11 28 365 33 348 4.79e-25 105
MS.gene78342.t1 AT1G75890 27.647 340 211 12 34 363 75 389 5.46e-25 105
MS.gene78342.t1 AT1G53940 30.476 315 189 12 60 367 68 359 8.04e-25 104
MS.gene78342.t1 AT1G75900 27.616 344 210 12 33 365 41 356 8.29e-25 104
MS.gene78342.t1 AT1G71120 25.862 348 209 11 34 367 30 342 1.06e-24 104
MS.gene78342.t1 AT1G71691 27.193 342 213 10 34 367 54 367 1.19e-24 104
MS.gene78342.t1 AT3G14820 26.966 356 226 11 17 365 14 342 1.33e-24 103
MS.gene78342.t1 AT3G50400 27.479 353 208 13 35 367 34 358 2.24e-24 103
MS.gene78342.t1 AT4G28780 27.479 353 212 13 35 372 31 354 5.57e-24 102
MS.gene78342.t1 AT1G75890 27.457 346 217 13 34 363 46 373 5.62e-24 102
MS.gene78342.t1 AT1G20130 26.211 351 221 12 33 369 202 528 6.72e-24 103
MS.gene78342.t1 AT1G20130 26.211 351 221 12 33 369 182 508 7.15e-24 103
MS.gene78342.t1 AT1G29660 26.289 388 239 13 11 384 10 364 2.42e-23 100
MS.gene78342.t1 AT5G03820 25.575 348 213 14 34 365 32 349 3.71e-23 99.8
MS.gene78342.t1 AT1G33811 27.346 373 242 13 10 372 8 361 3.73e-23 100
MS.gene78342.t1 AT1G71250 26.934 349 217 10 34 371 40 361 4.94e-23 99.8
MS.gene78342.t1 AT1G53920 25.266 376 234 11 11 369 21 366 6.03e-23 99.8
MS.gene78342.t1 AT1G73610 29.118 340 194 11 35 365 35 336 6.53e-23 99.0
MS.gene78342.t1 AT5G03820 25.575 348 213 14 34 365 60 377 8.30e-23 99.4
MS.gene78342.t1 AT5G15720 28.428 299 175 10 87 372 52 324 1.15e-22 98.2
MS.gene78342.t1 AT4G18970 24.444 360 232 11 34 383 27 356 1.16e-22 98.6
MS.gene78342.t1 AT2G30220 27.793 367 211 14 18 364 16 348 1.52e-22 98.2
MS.gene78342.t1 AT4G18970 24.444 360 232 11 34 383 27 356 1.69e-22 98.6
MS.gene78342.t1 AT5G45960 26.284 331 210 14 35 354 47 354 1.85e-22 98.2
MS.gene78342.t1 AT1G75880 26.979 341 215 11 34 365 51 366 3.50e-22 97.4
MS.gene78342.t1 AT5G45670 23.238 383 253 11 11 383 6 357 4.96e-22 96.7
MS.gene78342.t1 AT1G74460 27.114 343 206 13 37 365 25 337 5.56e-22 96.7
MS.gene78342.t1 AT1G58520 27.586 348 212 14 25 365 20 334 1.74e-21 94.7
MS.gene78342.t1 AT1G58525 27.586 348 212 14 25 365 20 334 1.74e-21 94.7
MS.gene78342.t1 AT3G04290 25.926 351 220 11 35 372 29 352 1.84e-21 95.1
MS.gene78342.t1 AT5G18430 25.915 355 217 13 35 372 28 353 2.04e-21 94.7
MS.gene78342.t1 AT1G75880 26.901 342 215 12 34 365 51 367 2.13e-21 95.1
MS.gene78342.t1 AT5G15720 29.496 278 169 9 34 298 29 292 3.60e-21 93.6
MS.gene78342.t1 AT1G20135 26.997 363 215 10 9 360 3 326 5.23e-21 93.2
MS.gene78342.t1 AT1G75910 24.796 367 227 11 12 365 5 335 1.55e-20 92.0
MS.gene78342.t1 AT1G23500 27.457 346 197 11 35 367 35 339 1.64e-20 92.0
MS.gene78342.t1 AT2G30310 25.532 376 210 13 18 362 11 347 1.74e-20 92.0
MS.gene78342.t1 AT1G06990 24.933 373 222 13 12 356 1 343 2.46e-20 91.7
MS.gene78342.t1 AT2G31540 24.359 390 235 13 5 369 4 358 4.29e-20 90.9
MS.gene78342.t1 AT5G41890 24.478 335 193 11 60 367 58 359 1.77e-19 89.4
MS.gene78342.t1 AT2G19060 25.886 367 221 14 19 372 13 341 1.99e-19 89.0
MS.gene78342.t1 AT2G03980 30.798 263 153 10 32 284 40 283 7.37e-19 87.4
MS.gene78342.t1 AT2G03980 30.798 263 153 10 32 284 40 283 7.37e-19 87.4
MS.gene78342.t1 AT2G03980 30.798 263 153 10 32 284 40 283 7.37e-19 87.4
MS.gene78342.t1 AT2G03980 30.798 263 153 10 32 284 40 283 7.37e-19 87.4
MS.gene78342.t1 AT1G53990 27.551 392 231 15 10 384 11 366 3.86e-18 85.5
MS.gene78342.t1 AT5G55050 28.455 369 217 15 23 372 27 367 4.16e-18 85.5
MS.gene78342.t1 AT2G19050 26.124 356 201 13 34 372 30 340 4.44e-18 85.1
MS.gene78342.t1 AT1G28600 32.093 215 115 11 8 206 5 204 5.66e-18 82.4
MS.gene78342.t1 AT1G54010 27.174 368 216 15 5 358 3 332 6.13e-18 85.1
MS.gene78342.t1 AT5G33370 25.836 329 196 13 60 372 57 353 6.43e-18 84.7
MS.gene78342.t1 AT1G58430 23.316 386 235 13 5 366 4 352 9.34e-18 84.3
MS.gene78342.t1 AT1G54030 27.451 306 174 10 59 360 79 340 1.01e-17 84.7
MS.gene78342.t1 AT1G71691 27.143 280 167 9 34 298 54 311 1.82e-17 82.8
MS.gene78342.t1 AT1G71691 25.170 294 172 10 87 367 8 266 3.13e-17 81.6
MS.gene78342.t1 AT3G14220 25.066 379 225 15 5 367 2 337 3.38e-17 82.8
MS.gene78342.t1 AT1G54020 25.291 344 207 10 32 365 28 331 3.99e-17 82.4
MS.gene78342.t1 AT1G75930 28.621 290 177 11 32 307 26 299 4.59e-17 82.0
MS.gene78342.t1 AT1G54000 26.171 363 214 15 12 361 14 335 2.47e-16 80.5
MS.gene78342.t1 AT1G75920 25.344 363 204 14 32 365 21 345 3.13e-16 79.7
MS.gene78342.t1 AT2G24560 24.425 348 209 15 33 360 32 345 3.38e-16 79.7
MS.gene78342.t1 AT5G03980 25.822 213 141 7 161 366 114 316 5.17e-16 78.6
MS.gene78342.t1 AT4G16233 34.400 125 70 2 247 371 6 118 1.17e-15 73.6
MS.gene78342.t1 AT1G28610 31.383 188 105 6 32 206 28 204 1.76e-15 75.9
MS.gene78342.t1 AT2G19010 25.140 358 202 13 34 372 59 369 2.47e-15 77.4
MS.gene78342.t1 AT2G19010 25.140 358 202 13 34 372 29 339 2.55e-15 77.0
MS.gene78342.t1 AT3G43550 27.667 300 189 13 11 298 3 286 1.44e-14 73.9
MS.gene78342.t1 AT5G37690 24.854 342 209 14 39 365 31 339 1.70e-14 74.7
MS.gene78342.t1 AT1G53940 29.268 246 151 9 60 298 68 297 9.04e-14 72.0
MS.gene78342.t1 AT5G03610 23.529 340 210 11 36 362 44 346 1.58e-13 71.6
MS.gene78342.t1 AT2G19050 27.206 272 153 10 34 288 30 273 1.62e-13 70.9
MS.gene78342.t1 AT2G31550 22.685 216 142 6 163 370 20 218 4.11e-13 68.6
MS.gene78342.t1 AT5G37690 24.265 272 163 11 104 365 93 331 1.52e-12 68.6
MS.gene78342.t1 AT2G04020 31.776 214 122 9 32 234 40 240 2.35e-12 67.0
MS.gene78342.t1 AT2G04020 31.776 214 122 9 32 234 40 240 3.49e-12 67.4
MS.gene78342.t1 AT3G09930 22.807 342 211 12 36 362 40 343 2.77e-11 64.7
MS.gene78342.t1 AT3G09930 22.807 342 211 12 36 362 40 343 2.77e-11 64.7
MS.gene78342.t1 AT5G03600 24.556 338 205 16 34 362 13 309 3.07e-11 64.3
MS.gene78342.t1 AT3G14210 25.833 360 207 16 35 378 36 351 4.33e-11 64.3
MS.gene78342.t1 AT5G03600 23.964 338 207 15 34 362 48 344 4.94e-11 63.9

Find 88 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTCTCCTTTGGGATTC+AGG 0.044235 7.1:+2669006 MS.gene78342:CDS
GCCATTCTTAAATGCATATT+TGG 0.136590 7.1:+2668895 MS.gene78342:CDS
TTACAACCTTTCCTAAAATT+TGG 0.148502 7.1:-2668932 None:intergenic
CCCTCTGCCCTTTCTCCTTT+GGG 0.151136 7.1:+2668999 MS.gene78342:CDS
AATAAGCACATTATTATTCT+TGG 0.193684 7.1:-2667293 None:intergenic
TGTTGGATCAGTTCCAAATT+TGG 0.199113 7.1:-2669527 None:intergenic
GCTCAGAATGTAGCCAAATT+TGG 0.208634 7.1:+2669514 MS.gene78342:CDS
TCCCTCTGCCCTTTCTCCTT+TGG 0.229352 7.1:+2668998 MS.gene78342:CDS
AGAATTTGAATCTGGAATTA+AGG 0.237994 7.1:+2669316 MS.gene78342:CDS
TTTCAGCTTGTTCCACCTTA+TGG 0.261204 7.1:+2667442 MS.gene78342:CDS
AGCATGAAGTTGTAGGTTAA+AGG 0.261879 7.1:-2669599 None:intergenic
CGCGCTCTTGAATTGCTTGC+AGG 0.276885 7.1:+2669055 MS.gene78342:CDS
CCTAGTTCATCAAGCTTTGT+TGG 0.307630 7.1:-2669544 None:intergenic
AAATGCATATTTGGATTCAT+TGG 0.318406 7.1:+2668904 MS.gene78342:CDS
TGCTCTGTGTAGTAAATTGC+AGG 0.331048 7.1:+2669618 MS.gene78342:CDS
TATCCACAACATGCCATAAT+AGG 0.340753 7.1:-2670022 None:intergenic
TCAAATTCTAAAAGAATTGT+TGG 0.351758 7.1:-2669302 None:intergenic
TGTAATTGTCGTTCCATTGA+AGG 0.359086 7.1:-2670098 None:intergenic
CAACTTAGGTGATTCAAATT+CGG 0.362793 7.1:+2667390 MS.gene78342:CDS
CCATCACATGCCCTTCCATT+TGG 0.365221 7.1:-2667484 None:intergenic
ATTATGGCATGTTGTGGATA+TGG 0.374728 7.1:+2670025 MS.gene78342:CDS
AGGGTTTGAACAACCTATTA+TGG 0.383539 7.1:+2670009 MS.gene78342:intron
AATGCATATTTGGATTCATT+GGG 0.397716 7.1:+2668905 MS.gene78342:CDS
ATGCACCAGCAAGATCATTC+TGG 0.412020 7.1:-2669241 None:intergenic
CTTGAATTGCTTGCAGGAAA+AGG 0.426571 7.1:+2669061 MS.gene78342:CDS
TTGAAGTAGTTCTGTCCATA+AGG 0.431121 7.1:-2667457 None:intergenic
ACATATGTGACATTTGAATC+TGG 0.436387 7.1:-2669649 None:intergenic
GGTTGTAACTTTGCAGCAGC+TGG 0.442366 7.1:+2668947 MS.gene78342:CDS
TCACCTAAGTTGAAAACTGC+TGG 0.446971 7.1:-2667379 None:intergenic
AACTACTTCAAAACTCCAAA+TGG 0.448519 7.1:+2667469 MS.gene78342:CDS
GATACACAATACAGGTCCTC+TGG 0.451058 7.1:+2669483 MS.gene78342:CDS
CCAACAAAGCTTGATGAACT+AGG 0.452220 7.1:+2669544 MS.gene78342:CDS
TACAGGTCCTCTGGGATGCT+TGG 0.454524 7.1:+2669492 MS.gene78342:CDS
TCCAAATATGCATTTAAGAA+TGG 0.454805 7.1:-2668896 None:intergenic
ACAGTTCTGAGTATATCAAC+TGG 0.456549 7.1:+2670137 MS.gene78342:CDS
TACACAGAGCATGAAGTTGT+AGG 0.457023 7.1:-2669606 None:intergenic
GGGAACACAAAGACCTTCAA+TGG 0.460647 7.1:+2670085 MS.gene78342:CDS
GGTGAACTTACAGTTGGGTT+GGG 0.464328 7.1:+2667418 MS.gene78342:CDS
ATTGCAAATTATTCTAGATA+CGG 0.471729 7.1:+2669700 MS.gene78342:CDS
GGAACGACAATTACAGCAAA+AGG 0.471811 7.1:+2670106 MS.gene78342:CDS
CAGAGGGATGATGCAGTGGC+TGG 0.475339 7.1:-2668983 None:intergenic
ACCTGAATCCCAAAGGAGAA+AGG 0.487971 7.1:-2669007 None:intergenic
TTGGAATGGAGGCAAGTACT+TGG 0.488366 7.1:-2669283 None:intergenic
ATTGGCCAGAATGATCTTGC+TGG 0.494393 7.1:+2669236 MS.gene78342:CDS
GTTGTTTGCAGTGGATGCAT+TGG 0.498025 7.1:+2668868 MS.gene78342:intron
GACACAGGTGAACTTACAGT+TGG 0.510158 7.1:+2667412 MS.gene78342:CDS
GAGCGCGAGCTTTGAACTTG+AGG 0.512637 7.1:-2669039 None:intergenic
AACTTGAGCTTGAGAAGGAA+TGG 0.518487 7.1:-2670253 None:intergenic
CCTGAATCCCAAAGGAGAAA+GGG 0.521210 7.1:-2669006 None:intergenic
AGGTGAACTTACAGTTGGGT+TGG 0.523219 7.1:+2667417 MS.gene78342:CDS
GGATTATACATGTTTGACAT+TGG 0.523669 7.1:+2669218 MS.gene78342:CDS
GATGAACTAGGATGTGTTAG+TGG 0.524106 7.1:+2669556 MS.gene78342:CDS
TTCTAAAAGAATTGTTGGAA+TGG 0.529731 7.1:-2669297 None:intergenic
TAAAAGAATTGTTGGAATGG+AGG 0.531513 7.1:-2669294 None:intergenic
ACTCTACTGTCATAGTTCAA+TGG 0.536947 7.1:-2670055 None:intergenic
ATGACAGTAGAGTGACTTGT+GGG 0.545670 7.1:+2670065 MS.gene78342:CDS
TATTTCTGGATACACAATAC+AGG 0.545778 7.1:+2669475 MS.gene78342:CDS
GTTGCATCACAGATTCTCAC+TGG 0.548587 7.1:+2670196 MS.gene78342:CDS
ATCTAGAATAATTTGCAATG+AGG 0.555564 7.1:-2669696 None:intergenic
TTTAGAACTTGAGCTTGAGA+AGG 0.563689 7.1:-2670258 None:intergenic
ACACAGGTGAACTTACAGTT+GGG 0.567683 7.1:+2667413 MS.gene78342:CDS
TCTGAGTATATCAACTGGGA+TGG 0.570331 7.1:+2670142 MS.gene78342:CDS
TTGATAGAGACTATATGATG+AGG 0.571489 7.1:+2669444 MS.gene78342:intron
TTCAAACTAAGGGCCATGGC+GGG 0.575921 7.1:+2667265 None:intergenic
GGGATGATGCAGTGGCTGGA+AGG 0.577213 7.1:-2668979 None:intergenic
ACTTCAAAACTCCAAATGGA+AGG 0.581393 7.1:+2667473 MS.gene78342:CDS
TGATAGAGACTATATGATGA+GGG 0.585085 7.1:+2669445 MS.gene78342:intron
AAGTAGTTCTGTCCATAAGG+TGG 0.589355 7.1:-2667454 None:intergenic
GGTGATTCAAATTCGGACAC+AGG 0.594936 7.1:+2667397 MS.gene78342:CDS
ATTCTTGGAATCACCCGCCA+TGG 0.603699 7.1:-2667278 None:intergenic
CCAAATGGAAGGGCATGTGA+TGG 0.608534 7.1:+2667484 MS.gene78342:CDS
CAACCTATTATGGCATGTTG+TGG 0.613380 7.1:+2670019 MS.gene78342:CDS
CAGTTCTGAGTATATCAACT+GGG 0.617548 7.1:+2670138 MS.gene78342:CDS
ATACACAATACAGGTCCTCT+GGG 0.618984 7.1:+2669484 MS.gene78342:CDS
GATAGAGACTATATGATGAG+GGG 0.620901 7.1:+2669446 MS.gene78342:intron
CCCAAAGGAGAAAGGGCAGA+GGG 0.623206 7.1:-2668999 None:intergenic
AGGGCAGAGGGATGATGCAG+TGG 0.626862 7.1:-2668987 None:intergenic
TCCCAAAGGAGAAAGGGCAG+AGG 0.629994 7.1:-2669000 None:intergenic
ATAGAGACTATATGATGAGG+GGG 0.637723 7.1:+2669447 MS.gene78342:intron
CTTCAAAACTCCAAATGGAA+GGG 0.639200 7.1:+2667474 MS.gene78342:CDS
CTACTGTCATAGTTCAATGG+TGG 0.651617 7.1:-2670052 None:intergenic
TATGACAGTAGAGTGACTTG+TGG 0.659401 7.1:+2670064 MS.gene78342:CDS
GCTCTGTGTAGTAAATTGCA+GGG 0.661282 7.1:+2669619 MS.gene78342:CDS
CTGAGACACCTGAATCCCAA+AGG 0.666075 7.1:-2669014 None:intergenic
ATGAACTAGGATGTGTTAGT+GGG 0.666553 7.1:+2669557 MS.gene78342:CDS
TTAGGAAGTCAACAATGAGA+CGG 0.673079 7.1:-2667507 None:intergenic
ATGGCATGTTGTGGATATGG+AGG 0.676401 7.1:+2670028 MS.gene78342:CDS
TTCTGAGCCAAGCATCCCAG+AGG 0.701144 7.1:-2669499 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTATTTATTTTTTA+AGG - chr7.1:2668027-2668046 None:intergenic 0.0%
!! TAAAAGTAAAATATATTTGT+AGG + chr7.1:2668045-2668064 MS.gene78342:intron 10.0%
!! TAAATATCATAACATAAATA+AGG + chr7.1:2668211-2668230 MS.gene78342:intron 10.0%
!! TGATTTATGATATAATATTA+TGG + chr7.1:2668111-2668130 MS.gene78342:intron 10.0%
!!! AATTAATGTATTTTTTTTAC+AGG + chr7.1:2667983-2668002 MS.gene78342:intron 10.0%
!!! ATCTTATTTAAATATGTTTT+TGG - chr7.1:2668072-2668091 None:intergenic 10.0%
!! AAAATTCAAAACTAAATTAG+TGG - chr7.1:2669096-2669115 None:intergenic 15.0%
!! ATATTACACACATTATAAAT+TGG + chr7.1:2667851-2667870 MS.gene78342:intron 15.0%
!! ATTGTTAGATAGAAAAATAA+TGG + chr7.1:2668434-2668453 MS.gene78342:intron 15.0%
!! GTAATATTTATATATTTGCA+GGG + chr7.1:2669990-2670009 MS.gene78342:intron 15.0%
!! TACAATGTAAAATATATTTC+AGG - chr7.1:2667772-2667791 None:intergenic 15.0%
!! TGTAATATTTATATATTTGC+AGG + chr7.1:2669989-2670008 MS.gene78342:intron 15.0%
!! TTTAGGTAAGTATAATAATT+TGG + chr7.1:2668248-2668267 MS.gene78342:intron 15.0%
!!! AATGCAAACTTTTTAATTTA+CGG - chr7.1:2668809-2668828 None:intergenic 15.0%
!!! TATTACATTTATCTTTTTCA+CGG + chr7.1:2669737-2669756 MS.gene78342:intron 15.0%
!! AAAGAAAAAAAAAAGTTGCA+AGG - chr7.1:2667724-2667743 None:intergenic 20.0%
!! AAGTATAATAATTTGGACAA+AGG + chr7.1:2668255-2668274 MS.gene78342:intron 20.0%
!! AATAAGCACATTATTATTCT+TGG - chr7.1:2667296-2667315 None:intergenic 20.0%
!! AATAATCAATTAATTAGCCA+TGG + chr7.1:2668540-2668559 MS.gene78342:intron 20.0%
!! ATTACAAATTTAACAACTCT+TGG - chr7.1:2669975-2669994 None:intergenic 20.0%
!! ATTGCAAATTATTCTAGATA+CGG + chr7.1:2669700-2669719 MS.gene78342:CDS 20.0%
!! TATGCAAATTATACATATGA+TGG - chr7.1:2668569-2668588 None:intergenic 20.0%
!!! AAAAAACACATTTCTTTTAC+TGG - chr7.1:2667699-2667718 None:intergenic 20.0%
!!! ATTACATTTATCTTTTTCAC+GGG + chr7.1:2669738-2669757 MS.gene78342:intron 20.0%
!!! ATTCTCATTCTTTGTTTTAT+TGG + chr7.1:2669421-2669440 MS.gene78342:intron 20.0%
!!! ATTCTTTTAGAATTTGAATC+TGG + chr7.1:2669308-2669327 MS.gene78342:CDS 20.0%
!!! GCAACTTTTTTTTTTCTTTT+TGG + chr7.1:2667725-2667744 MS.gene78342:intron 20.0%
!!! GCTTTCATTTTGTTTATTTT+TGG + chr7.1:2669356-2669375 MS.gene78342:intron 20.0%
!!! TCAAATTCTAAAAGAATTGT+TGG - chr7.1:2669305-2669324 None:intergenic 20.0%
!!! TGAGAATTCTTTTATGTTAA+TGG - chr7.1:2669408-2669427 None:intergenic 20.0%
!!! TGCATTTTATTCAAAAACTT+TGG + chr7.1:2669259-2669278 MS.gene78342:CDS 20.0%
!!! TTCATTTTAGTCATTATGTT+TGG - chr7.1:2667832-2667851 None:intergenic 20.0%
! AAATGCATATTTGGATTCAT+TGG + chr7.1:2668904-2668923 MS.gene78342:CDS 25.0%
! AATCATAACACAAACTCTAA+AGG - chr7.1:2669769-2669788 None:intergenic 25.0%
! AATGCATATTTGGATTCATT+GGG + chr7.1:2668905-2668924 MS.gene78342:CDS 25.0%
! ACCAATACTTTCAATTTGAT+TGG + chr7.1:2667921-2667940 MS.gene78342:intron 25.0%
! CATAAATAAGGACATATGAT+AGG + chr7.1:2668223-2668242 MS.gene78342:intron 25.0%
! CCAATACTTTCAATTTGATT+GGG + chr7.1:2667922-2667941 MS.gene78342:intron 25.0%
! CTACTTAATGGAATAAAACT+TGG + chr7.1:2668159-2668178 MS.gene78342:intron 25.0%
! TAAGAAAATCAATGATGAGA+CGG - chr7.1:2668771-2668790 None:intergenic 25.0%
! TACATATACATATACATCGT+CGG + chr7.1:2669792-2669811 MS.gene78342:intron 25.0%
! TCCAAATATGCATTTAAGAA+TGG - chr7.1:2668899-2668918 None:intergenic 25.0%
! TTACAACCTTTCCTAAAATT+TGG - chr7.1:2668935-2668954 None:intergenic 25.0%
! TTGATGTTTCTTTGTATGTT+TGG - chr7.1:2668415-2668434 None:intergenic 25.0%
!! AAAATCTAAATGGATGGATT+CGG - chr7.1:2668620-2668639 None:intergenic 25.0%
!! AGAATTTGAATCTGGAATTA+AGG + chr7.1:2669316-2669335 MS.gene78342:CDS 25.0%
!! ATCTAGAATAATTTGCAATG+AGG - chr7.1:2669699-2669718 None:intergenic 25.0%
!! CAACATGAACAAATTTTACA+AGG + chr7.1:2667881-2667900 MS.gene78342:intron 25.0%
!! TTCTAAAAGAATTGTTGGAA+TGG - chr7.1:2669300-2669319 None:intergenic 25.0%
!! TTTTAGTCATTATGTTTGGA+AGG - chr7.1:2667828-2667847 None:intergenic 25.0%
!!! CAAGTTTTATTCCATTAAGT+AGG - chr7.1:2668161-2668180 None:intergenic 25.0%
AAACTGCTGGAAAATCTAAA+TGG - chr7.1:2668630-2668649 None:intergenic 30.0%
AACTACTTCAAAACTCCAAA+TGG + chr7.1:2667469-2667488 MS.gene78342:CDS 30.0%
ACATATGTGACATTTGAATC+TGG - chr7.1:2669652-2669671 None:intergenic 30.0%
ATGTTTCTTTGTATGTTTGG+TGG - chr7.1:2668412-2668431 None:intergenic 30.0%
CAACTTAGGTGATTCAAATT+CGG + chr7.1:2667390-2667409 MS.gene78342:CDS 30.0%
GCAAATTATACATATGATGG+TGG - chr7.1:2668566-2668585 None:intergenic 30.0%
GCCATTCTTAAATGCATATT+TGG + chr7.1:2668895-2668914 MS.gene78342:CDS 30.0%
GGATTATACATGTTTGACAT+TGG + chr7.1:2669218-2669237 MS.gene78342:CDS 30.0%
TAAAAGAATTGTTGGAATGG+AGG - chr7.1:2669297-2669316 None:intergenic 30.0%
TAATTTGGACAAAGGAATCT+TGG + chr7.1:2668263-2668282 MS.gene78342:intron 30.0%
TGATAGAGACTATATGATGA+GGG + chr7.1:2669445-2669464 MS.gene78342:intron 30.0%
TGTTTCTTTGTATGTTTGGT+GGG - chr7.1:2668411-2668430 None:intergenic 30.0%
TTCAACAACATTGCACTATT+TGG - chr7.1:2668340-2668359 None:intergenic 30.0%
TTCTCAAAAATATCTTCGCT+CGG - chr7.1:2669197-2669216 None:intergenic 30.0%
TTGATAGAGACTATATGATG+AGG + chr7.1:2669444-2669463 MS.gene78342:intron 30.0%
TTTCAAAAACAAGCAAACAC+TGG + chr7.1:2668488-2668507 MS.gene78342:intron 30.0%
! CCCAATCAAATTGAAAGTAT+TGG - chr7.1:2667925-2667944 None:intergenic 30.0%
! TTTGAATCTGGAATTAAGGT+TGG + chr7.1:2669320-2669339 MS.gene78342:intron 30.0%
! TTTTCCTAATGATGTTGTCT+TGG + chr7.1:2668843-2668862 MS.gene78342:intron 30.0%
!! AGCGAAGATATTTTTGAGAA+AGG + chr7.1:2669197-2669216 MS.gene78342:CDS 30.0%
!! TATTTCTGGATACACAATAC+AGG + chr7.1:2669475-2669494 MS.gene78342:CDS 30.0%
!!! TGTGTTATTTTGCACATGTT+TGG + chr7.1:2667327-2667346 MS.gene78342:CDS 30.0%
AAAAACAAGCAAACACTGGA+AGG + chr7.1:2668492-2668511 MS.gene78342:intron 35.0%
ACAACATTGCACTATTTGGA+TGG - chr7.1:2668336-2668355 None:intergenic 35.0%
ACAACCAAGACAACATCATT+AGG - chr7.1:2668850-2668869 None:intergenic 35.0%
ACAAGGACTCAAAAACATCA+AGG + chr7.1:2667898-2667917 MS.gene78342:intron 35.0%
ACTCTACTGTCATAGTTCAA+TGG - chr7.1:2670058-2670077 None:intergenic 35.0%
ACTTACTTTCATCTACCATC+AGG + chr7.1:2668730-2668749 MS.gene78342:intron 35.0%
ACTTCAAAACTCCAAATGGA+AGG + chr7.1:2667473-2667492 MS.gene78342:CDS 35.0%
AGCATGAAGTTGTAGGTTAA+AGG - chr7.1:2669602-2669621 None:intergenic 35.0%
AGGACATATGATAGGAGTTT+AGG + chr7.1:2668231-2668250 MS.gene78342:intron 35.0%
AGGGTTTGAACAACCTATTA+TGG + chr7.1:2670009-2670028 MS.gene78342:intron 35.0%
ATAGAGACTATATGATGAGG+GGG + chr7.1:2669447-2669466 MS.gene78342:intron 35.0%
ATGAACTAGGATGTGTTAGT+GGG + chr7.1:2669557-2669576 MS.gene78342:CDS 35.0%
ATGTAGCTGATCCTACTTAA+TGG + chr7.1:2668147-2668166 MS.gene78342:intron 35.0%
ATTATGGCATGTTGTGGATA+TGG + chr7.1:2670025-2670044 MS.gene78342:CDS 35.0%
CTTACTTTCATCTACCATCA+GGG + chr7.1:2668731-2668750 MS.gene78342:intron 35.0%
CTTCAAAACTCCAAATGGAA+GGG + chr7.1:2667474-2667493 MS.gene78342:CDS 35.0%
GATAGAGACTATATGATGAG+GGG + chr7.1:2669446-2669465 MS.gene78342:intron 35.0%
GGAACTAAAAGATACACAGA+AGG - chr7.1:2667751-2667770 None:intergenic 35.0%
GGCACAAGGTAATAAGAATA+TGG - chr7.1:2668599-2668618 None:intergenic 35.0%
TATCCACAACATGCCATAAT+AGG - chr7.1:2670025-2670044 None:intergenic 35.0%
TCTAGATACGGTTAGTAACT+TGG + chr7.1:2669712-2669731 MS.gene78342:intron 35.0%
TCTCAAAAATATCTTCGCTC+GGG - chr7.1:2669196-2669215 None:intergenic 35.0%
TGAAAGTAAGTGTGTCCATT+TGG - chr7.1:2668721-2668740 None:intergenic 35.0%
TGCTGGAAAATCTAAATGGA+TGG - chr7.1:2668626-2668645 None:intergenic 35.0%
TGTAATTGTCGTTCCATTGA+AGG - chr7.1:2670101-2670120 None:intergenic 35.0%
TGTTGGATCAGTTCCAAATT+TGG - chr7.1:2669530-2669549 None:intergenic 35.0%
TTAGGAAGTCAACAATGAGA+CGG - chr7.1:2667510-2667529 None:intergenic 35.0%
TTCACTCTTTCAAGCATTTC+AGG + chr7.1:2669149-2669168 MS.gene78342:intron 35.0%
! AATGGCATTTTGTCTGAGAA+AGG - chr7.1:2670238-2670257 None:intergenic 35.0%
! ATTTTGCACATGTTTGGAAG+TGG + chr7.1:2667333-2667352 MS.gene78342:CDS 35.0%
! CATTGGGTTTGCCAAATTTT+AGG + chr7.1:2668921-2668940 MS.gene78342:CDS 35.0%
! TTGAAGTAGTTCTGTCCATA+AGG - chr7.1:2667460-2667479 None:intergenic 35.0%
! TTTCCAGCAGTTTTCAACTT+AGG + chr7.1:2667376-2667395 MS.gene78342:CDS 35.0%
! TTTCCAGCAGTTTTCAACTT+TGG + chr7.1:2667376-2667395 MS.gene78342:CDS 35.0%
!! ACAGTTCTGAGTATATCAAC+TGG + chr7.1:2670137-2670156 MS.gene78342:CDS 35.0%
!! CAGTTCTGAGTATATCAACT+GGG + chr7.1:2670138-2670157 MS.gene78342:CDS 35.0%
!! GGTTTGCCAAATTTTAGGAA+AGG + chr7.1:2668926-2668945 MS.gene78342:CDS 35.0%
AACTTGAGCTTGAGAAGGAA+TGG - chr7.1:2670256-2670275 None:intergenic 40.0%
AAGTAAGTGTGTCCATTTGG+TGG - chr7.1:2668718-2668737 None:intergenic 40.0%
ACACAGGTGAACTTACAGTT+GGG + chr7.1:2667413-2667432 MS.gene78342:CDS 40.0%
AGTAAGTGTGTCCATTTGGT+GGG - chr7.1:2668717-2668736 None:intergenic 40.0%
ATACACAATACAGGTCCTCT+GGG + chr7.1:2669484-2669503 MS.gene78342:CDS 40.0%
CAACCTATTATGGCATGTTG+TGG + chr7.1:2670019-2670038 MS.gene78342:CDS 40.0%
CCAACAAAGCTTGATGAACT+AGG + chr7.1:2669544-2669563 MS.gene78342:CDS 40.0%
CTACTGTCATAGTTCAATGG+TGG - chr7.1:2670055-2670074 None:intergenic 40.0%
CTTGAATTGCTTGCAGGAAA+AGG + chr7.1:2669061-2669080 MS.gene78342:CDS 40.0%
GATGAACTAGGATGTGTTAG+TGG + chr7.1:2669556-2669575 MS.gene78342:CDS 40.0%
GCTCAGAATGTAGCCAAATT+TGG + chr7.1:2669514-2669533 MS.gene78342:CDS 40.0%
GCTCTGTGTAGTAAATTGCA+GGG + chr7.1:2669619-2669638 MS.gene78342:CDS 40.0%
GGAACGACAATTACAGCAAA+AGG + chr7.1:2670106-2670125 MS.gene78342:CDS 40.0%
GTAAAGGCTTTCAAAACCAG+CGG - chr7.1:2668695-2668714 None:intergenic 40.0%
TAAAAGTGAGTCATGCGACA+AGG + chr7.1:2668305-2668324 MS.gene78342:intron 40.0%
TACACAGAGCATGAAGTTGT+AGG - chr7.1:2669609-2669628 None:intergenic 40.0%
TATGACAGTAGAGTGACTTG+TGG + chr7.1:2670064-2670083 MS.gene78342:CDS 40.0%
TCACCAAAGTTGAAAACTGC+TGG - chr7.1:2668643-2668662 None:intergenic 40.0%
TCTGAGTATATCAACTGGGA+TGG + chr7.1:2670142-2670161 MS.gene78342:CDS 40.0%
TGCTCTGTGTAGTAAATTGC+AGG + chr7.1:2669618-2669637 MS.gene78342:CDS 40.0%
TTCAAAACCAGCGGTAACAA+GGG - chr7.1:2668686-2668705 None:intergenic 40.0%
TTTCAAAACCAGCGGTAACA+AGG - chr7.1:2668687-2668706 None:intergenic 40.0%
! AAGTAGTTCTGTCCATAAGG+TGG - chr7.1:2667457-2667476 None:intergenic 40.0%
! ATCTTGGTTCTCTCTAGATC+AGG + chr7.1:2668279-2668298 MS.gene78342:intron 40.0%
! ATGACAGTAGAGTGACTTGT+GGG + chr7.1:2670065-2670084 MS.gene78342:CDS 40.0%
! CCTAGTTCATCAAGCTTTGT+TGG - chr7.1:2669547-2669566 None:intergenic 40.0%
! GCATTTTGTCTGAGAAAGGA+GGG - chr7.1:2670234-2670253 None:intergenic 40.0%
! TCACCTAAGTTGAAAACTGC+TGG - chr7.1:2667382-2667401 None:intergenic 40.0%
! TTTCAGCTTGTTCCACCTTA+TGG + chr7.1:2667442-2667461 MS.gene78342:CDS 40.0%
!! GGTTAAAGGTTTTAGCAGCT+TGG - chr7.1:2669588-2669607 None:intergenic 40.0%
!! TATACATATGATGGTGGCCA+TGG - chr7.1:2668560-2668579 None:intergenic 40.0%
ACCTGAATCCCAAAGGAGAA+AGG - chr7.1:2669010-2669029 None:intergenic 45.0%
AGGTGAACTTACAGTTGGGT+TGG + chr7.1:2667417-2667436 MS.gene78342:CDS 45.0%
ATGAGGGGGCTAGATATTTC+TGG + chr7.1:2669461-2669480 MS.gene78342:CDS 45.0%
ATGCACCAGCAAGATCATTC+TGG - chr7.1:2669244-2669263 None:intergenic 45.0%
ATGGCATGTTGTGGATATGG+AGG + chr7.1:2670028-2670047 MS.gene78342:CDS 45.0%
ATTGGCCAGAATGATCTTGC+TGG + chr7.1:2669236-2669255 MS.gene78342:CDS 45.0%
CCTGAATCCCAAAGGAGAAA+GGG - chr7.1:2669009-2669028 None:intergenic 45.0%
GAAAGCCTTTACCCACCAAA+TGG + chr7.1:2668703-2668722 MS.gene78342:intron 45.0%
GACACAGGTGAACTTACAGT+TGG + chr7.1:2667412-2667431 MS.gene78342:CDS 45.0%
GATACACAATACAGGTCCTC+TGG + chr7.1:2669483-2669502 MS.gene78342:CDS 45.0%
GGGAACACAAAGACCTTCAA+TGG + chr7.1:2670085-2670104 MS.gene78342:CDS 45.0%
GGTGAACTTACAGTTGGGTT+GGG + chr7.1:2667418-2667437 MS.gene78342:CDS 45.0%
GGTGATTCAAATTCCGACAC+CGG + chr7.1:2668658-2668677 MS.gene78342:intron 45.0%
GGTGATTCAAATTCGGACAC+AGG + chr7.1:2667397-2667416 MS.gene78342:CDS 45.0%
GTTGCATCACAGATTCTCAC+TGG + chr7.1:2670196-2670215 MS.gene78342:CDS 45.0%
GTTGTTTGCAGTGGATGCAT+TGG + chr7.1:2668868-2668887 MS.gene78342:intron 45.0%
TTGGAATGGAGGCAAGTACT+TGG - chr7.1:2669286-2669305 None:intergenic 45.0%
! AAATGGATGGATTCGGCACA+AGG - chr7.1:2668613-2668632 None:intergenic 45.0%
! GGCATTTTGTCTGAGAAAGG+AGG - chr7.1:2670235-2670254 None:intergenic 45.0%
! TGTGTCCATTTGGTGGGTAA+AGG - chr7.1:2668711-2668730 None:intergenic 45.0%
!! GTCTTGGTTGTTGTTTGCAG+TGG + chr7.1:2668859-2668878 MS.gene78342:intron 45.0%
!! ATAAAATAAAAATTATACTT+AGG - chr7.1:2667528-2667547 None:intergenic 5.0%
!! GTTAATAATTATAAATATAA+AGG + chr7.1:2667630-2667649 MS.gene78342:intron 5.0%
!! TAATATTAATAATCTATAAA+AGG - chr7.1:2667603-2667622 None:intergenic 5.0%
!!! ATAACTTTTTTTTTAAATAA+AGG + chr7.1:2667658-2667677 MS.gene78342:intron 5.0%
CCATCACATGCCCTTCCATT+TGG - chr7.1:2667487-2667506 None:intergenic 50.0%
CCATCAGGGAGATACTCTGA+TGG + chr7.1:2668745-2668764 MS.gene78342:intron 50.0%
CTGAGACACCTGAATCCCAA+AGG - chr7.1:2669017-2669036 None:intergenic 50.0%
GGTTGTAACTTTGCAGCAGC+TGG + chr7.1:2668947-2668966 MS.gene78342:CDS 50.0%
! CCAAATGGAAGGGCATGTGA+TGG + chr7.1:2667484-2667503 MS.gene78342:CDS 50.0%
! CCATCAGAGTATCTCCCTGA+TGG - chr7.1:2668748-2668767 None:intergenic 50.0%
!! CCCTTTCTCCTTTGGGATTC+AGG + chr7.1:2669006-2669025 MS.gene78342:CDS 50.0%
CCCAAAGGAGAAAGGGCAGA+GGG - chr7.1:2669002-2669021 None:intergenic 55.0%
CCCTCTGCCCTTTCTCCTTT+GGG + chr7.1:2668999-2669018 MS.gene78342:CDS 55.0%
CGCGCTCTTGAATTGCTTGC+AGG + chr7.1:2669055-2669074 MS.gene78342:CDS 55.0%
TCCCAAAGGAGAAAGGGCAG+AGG - chr7.1:2669003-2669022 None:intergenic 55.0%
TCCCTCTGCCCTTTCTCCTT+TGG + chr7.1:2668998-2669017 MS.gene78342:CDS 55.0%
TTCTGAGCCAAGCATCCCAG+AGG - chr7.1:2669502-2669521 None:intergenic 55.0%
!! GAGCGCGAGCTTTGAACTTG+AGG - chr7.1:2669042-2669061 None:intergenic 55.0%
!! TACAGGTCCTCTGGGATGCT+TGG + chr7.1:2669492-2669511 MS.gene78342:CDS 55.0%
AGGGCAGAGGGATGATGCAG+TGG - chr7.1:2668990-2669009 None:intergenic 60.0%
CAGAGGGATGATGCAGTGGC+TGG - chr7.1:2668986-2669005 None:intergenic 60.0%
GGGATGATGCAGTGGCTGGA+AGG - chr7.1:2668982-2669001 None:intergenic 60.0%
! ACCAGCGGTAACAAGGGTGC+CGG - chr7.1:2668680-2668699 None:intergenic 60.0%
!! GGTAACAAGGGTGCCGGTGT+CGG - chr7.1:2668674-2668693 None:intergenic 60.0%
ACCGGCACCCTTGTTACCGC+TGG + chr7.1:2668676-2668695 MS.gene78342:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 2667280 2670279 2667280 ID=MS.gene78342
chr7.1 mRNA 2667280 2670279 2667280 ID=MS.gene78342.t1;Parent=MS.gene78342
chr7.1 exon 2667280 2667529 2667280 ID=MS.gene78342.t1.exon1;Parent=MS.gene78342.t1
chr7.1 CDS 2667280 2667529 2667280 ID=cds.MS.gene78342.t1;Parent=MS.gene78342.t1
chr7.1 exon 2668879 2669082 2668879 ID=MS.gene78342.t1.exon2;Parent=MS.gene78342.t1
chr7.1 CDS 2668879 2669082 2668879 ID=cds.MS.gene78342.t1;Parent=MS.gene78342.t1
chr7.1 exon 2669171 2669337 2669171 ID=MS.gene78342.t1.exon3;Parent=MS.gene78342.t1
chr7.1 CDS 2669171 2669337 2669171 ID=cds.MS.gene78342.t1;Parent=MS.gene78342.t1
chr7.1 exon 2669451 2669721 2669451 ID=MS.gene78342.t1.exon4;Parent=MS.gene78342.t1
chr7.1 CDS 2669451 2669721 2669451 ID=cds.MS.gene78342.t1;Parent=MS.gene78342.t1
chr7.1 exon 2670011 2670279 2670011 ID=MS.gene78342.t1.exon5;Parent=MS.gene78342.t1
chr7.1 CDS 2670011 2670279 2670011 ID=cds.MS.gene78342.t1;Parent=MS.gene78342.t1
Gene Sequence

>MS.gene78342

ATGGCGGGTGATTCCAAGAATAATAATGTGCTTATTATTATTCATGTTGTGTTATTTTGCACATGTTTGGAAGTGGCAAATTCAGTTGAGTTCAATTTTCCAGCAGTTTTCAACTTAGGTGATTCAAATTCGGACACAGGTGAACTTACAGTTGGGTTGGGCTTTCAGCTTGTTCCACCTTATGGACAGAACTACTTCAAAACTCCAAATGGAAGGGCATGTGATGGCCGTCTCATTGTTGACTTCCTAAGTATAATTTTTATTTTATATTTATCACTTTAAATTATAGTTTTTAAACTTTATAAATAACTATTTATCTGCCTTTTATAGATTATTAATATTAATTGTGAGTTAATAATTATAAATATAAAGGTTTAAATAACTTTTTTTTTAAATAAAGGTTTAAATATTGTTTTCCAGTAAAAGAAATGTGTTTTTTGTCCTTGCAACTTTTTTTTTTCTTTTTGGCCTTCTGTGTATCTTTTAGTTCCTGAAATATATTTTACATTGTAATTGACTTCATATGTAGAACATTTGATTTTAGTCCTTCCAAACATAATGACTAAAATGAATATTACACACATTATAAATTGGTAAATTTCAACATGAACAAATTTTACAAGGACTCAAAAACATCAAGGACCAATACTTTCAATTTGATTGGGCTAGTTTAACTTCTTACAAAAAATTGTATATTTGCAAGAATTAATGTATTTTTTTTACAGGACTAAAAGTAAATATGTTCCTTAAAAAATAAATAAAAAATAAAAGTAAAATATATTTGTAGGACCAAAAACATATTTAAATAAGATATAAATAAATTTGTAAATATGATTTATGATATAATATTATGGTGTAATTTGATACATGTAGCTGATCCTACTTAATGGAATAAAACTTGGTTGTTGTTGTGTAATCAACAACGCTTTTCTAAATATCATAACATAAATAAGGACATATGATAGGAGTTTAGGTAAGTATAATAATTTGGACAAAGGAATCTTGGTTCTCTCTAGATCAGGTTTTAAAAGTGAGTCATGCGACAAGGTAAGACCATCCAAATAGTGCAATGTTGTTGAATTGAATCAATAAACTTATAACAATGACTTGCTTGCACTACAAGTATGACCCACCAAACATACAAAGAAACATCAATTGTTAGATAGAAAAATAATGGATAGCTAACTGTACAGCAGAGCAGATCTATGTTTCAAAAACAAGCAAACACTGGAAGGCTTAAAACACATACTTGCAGTAACAAATAATCAATTAATTAGCCATGGCCACCATCATATGTATAATTTGCATAATCACTACCATATTCTTATTACCTTGTGCCGAATCCATCCATTTAGATTTTCCAGCAGTTTTCAACTTTGGTGATTCAAATTCCGACACCGGCACCCTTGTTACCGCTGGTTTTGAAAGCCTTTACCCACCAAATGGACACACTTACTTTCATCTACCATCAGGGAGATACTCTGATGGCCGTCTCATCATTGATTTTCTTAGTAACAACTAAATCTCCGTAAATTAAAAAGTTTGCATTTTTTCTTCTTTTCATTTTCCTAATGATGTTGTCTTGGTTGTTGTTTGCAGTGGATGCATTGGATTTGCCATTCTTAAATGCATATTTGGATTCATTGGGTTTGCCAAATTTTAGGAAAGGTTGTAACTTTGCAGCAGCTGGTTCAACTATCCTTCCAGCCACTGCATCATCCCTCTGCCCTTTCTCCTTTGGGATTCAGGTGTCTCAGTTCCTCAAGTTCAAAGCTCGCGCTCTTGAATTGCTTGCAGGAAAAGGTATCTTCTACCACTAATTTAGTTTTGAATTTTTTAACAGAACAACTTTTTTTGCTGCAAATCTCATTCACTCTTTCAAGCATTTCAGGTAGAAAATTCGATAAGTATGTCCCGAGCGAAGATATTTTTGAGAAAGGATTATACATGTTTGACATTGGCCAGAATGATCTTGCTGGTGCATTTTATTCAAAAACTTTGGACCAAGTACTTGCCTCCATTCCAACAATTCTTTTAGAATTTGAATCTGGAATTAAGGTTGGTGTCAAATCATCTGCTTTCATTTTGTTTATTTTTGGCATAATACTATTCAAATATATTAAAACCATTAACATAAAAGAATTCTCATTCTTTGTTTTATTGGTTGATAGAGACTATATGATGAGGGGGCTAGATATTTCTGGATACACAATACAGGTCCTCTGGGATGCTTGGCTCAGAATGTAGCCAAATTTGGAACTGATCCAACAAAGCTTGATGAACTAGGATGTGTTAGTGGGCATAACCAAGCTGCTAAAACCTTTAACCTACAACTTCATGCTCTGTGTAGTAAATTGCAGGGTCAATATCCAGATTCAAATGTCACATATGTTGATATCTTCACTATAAAATCAAACCTCATTGCAAATTATTCTAGATACGGTTAGTAACTTGGCATATTACATTTATCTTTTTCACGGGTTTTTCCTTTAGAGTTTGTGTTATGATTTTATACATATACATATACATCGTCGGTGTAAAGATTTTTATGTTGTCAATAAATTATAATCATCACATTTGATTTTAATCATAACTGCTTCTAAAGTCACACACGATTGTGATTTGTTGACACGATAAAACTTTTTTACACGAAGAGTGCATCAAAATTAAACTCTTTGTATAAATAACTTTTCCAAGAGTTGTTAAATTTGTAATATTTATATATTTGCAGGGTTTGAACAACCTATTATGGCATGTTGTGGATATGGAGGTCCACCATTGAACTATGACAGTAGAGTGACTTGTGGGAACACAAAGACCTTCAATGGAACGACAATTACAGCAAAAGGTTGTAATGACAGTTCTGAGTATATCAACTGGGATGGAATTCATTACACTGAGACTGCAAATCAATATGTTGCATCACAGATTCTCACTGGAAAATACTCTGACCCTCCTTTCTCAGACAAAATGCCATTCCTTCTCAAGCTCAAGTTCTAA
Protein sequence

>MS.gene78342.t1

MAGDSKNNNVLIIIHVVLFCTCLEVANSVEFNFPAVFNLGDSNSDTGELTVGLGFQLVPPYGQNYFKTPNGRACDGRLIVDFLMDALDLPFLNAYLDSLGLPNFRKGCNFAAAGSTILPATASSLCPFSFGIQVSQFLKFKARALELLAGKGRKFDKYVPSEDIFEKGLYMFDIGQNDLAGAFYSKTLDQVLASIPTILLEFESGIKRLYDEGARYFWIHNTGPLGCLAQNVAKFGTDPTKLDELGCVSGHNQAAKTFNLQLHALCSKLQGQYPDSNVTYVDIFTIKSNLIANYSRYGFEQPIMACCGYGGPPLNYDSRVTCGNTKTFNGTTITAKGCNDSSEYINWDGIHYTETANQYVASQILTGKYSDPPFSDKMPFLLKLKF