Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78453.t1 | XP_003623241.1 | 73.9 | 498 | 97 | 9 | 1 | 484 | 46 | 524 | 4.90E-190 | 674.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78453.t1 | G7KRB7 | 73.9 | 498 | 97 | 9 | 1 | 484 | 46 | 524 | 3.5e-190 | 674.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene78453 | 0.847842 | 8.95E-60 | -1.69E-46 |
| MS.gene055952 | MS.gene78453 | 0.800553 | 1.37E-48 | -1.69E-46 |
| MS.gene056272 | MS.gene78453 | 0.806757 | 7.04E-50 | -1.69E-46 |
| MS.gene060654 | MS.gene78453 | 0.810853 | 9.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78453.t1 | MTR_7g067600 | 73.441 | 497 | 101 | 8 | 1 | 484 | 46 | 524 | 0.0 | 685 |
| MS.gene78453.t1 | MTR_7g067300 | 55.193 | 491 | 162 | 10 | 1 | 484 | 40 | 479 | 4.62e-165 | 475 |
| MS.gene78453.t1 | MTR_7g067940 | 48.837 | 516 | 209 | 12 | 1 | 484 | 47 | 539 | 1.34e-146 | 430 |
| MS.gene78453.t1 | MTR_7g068160 | 48.497 | 499 | 226 | 13 | 1 | 484 | 55 | 537 | 1.30e-139 | 412 |
| MS.gene78453.t1 | MTR_7g067750 | 45.743 | 505 | 216 | 16 | 1 | 484 | 82 | 549 | 4.84e-130 | 388 |
| MS.gene78453.t1 | MTR_7g068070 | 41.651 | 533 | 228 | 15 | 1 | 484 | 47 | 545 | 1.32e-116 | 353 |
| MS.gene78453.t1 | MTR_7g067880 | 43.093 | 485 | 240 | 11 | 1 | 470 | 48 | 511 | 7.48e-114 | 345 |
| MS.gene78453.t1 | MTR_7g067970 | 43.107 | 515 | 239 | 13 | 1 | 484 | 47 | 538 | 2.04e-113 | 345 |
| MS.gene78453.t1 | MTR_7g067990 | 43.846 | 390 | 194 | 11 | 104 | 484 | 224 | 597 | 3.05e-84 | 271 |
| MS.gene78453.t1 | MTR_7g067990 | 46.429 | 140 | 61 | 4 | 1 | 130 | 43 | 178 | 5.56e-30 | 123 |
| MS.gene78453.t1 | MTR_7g068150 | 46.921 | 341 | 124 | 8 | 2 | 339 | 45 | 331 | 4.28e-81 | 260 |
| MS.gene78453.t1 | MTR_3g466740 | 33.266 | 496 | 250 | 17 | 1 | 484 | 48 | 474 | 3.05e-63 | 213 |
| MS.gene78453.t1 | MTR_0067s0010 | 33.198 | 491 | 247 | 18 | 1 | 482 | 61 | 479 | 2.21e-58 | 200 |
| MS.gene78453.t1 | MTR_7g067660 | 46.875 | 192 | 83 | 6 | 305 | 481 | 192 | 379 | 4.04e-44 | 159 |
| MS.gene78453.t1 | MTR_7g067660 | 47.945 | 146 | 70 | 5 | 1 | 145 | 35 | 175 | 1.21e-30 | 122 |
| MS.gene78453.t1 | MTR_1g040690 | 25.926 | 513 | 262 | 19 | 2 | 481 | 49 | 476 | 3.43e-38 | 145 |
| MS.gene78453.t1 | MTR_7g068040 | 48.447 | 161 | 46 | 4 | 2 | 162 | 36 | 159 | 3.61e-36 | 132 |
| MS.gene78453.t1 | MTR_7g068030 | 49.265 | 136 | 45 | 4 | 262 | 381 | 5 | 132 | 6.72e-32 | 119 |
| MS.gene78453.t1 | MTR_1g038270 | 27.621 | 496 | 205 | 21 | 2 | 431 | 41 | 448 | 3.67e-30 | 123 |
| MS.gene78453.t1 | MTR_4g015450 | 26.568 | 271 | 125 | 9 | 228 | 476 | 252 | 470 | 5.97e-19 | 89.7 |
| MS.gene78453.t1 | MTR_4g015410 | 32.065 | 184 | 90 | 7 | 315 | 476 | 199 | 369 | 1.58e-17 | 84.7 |
| MS.gene78453.t1 | MTR_4g015410 | 32.468 | 231 | 114 | 9 | 29 | 250 | 1 | 198 | 3.98e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78453.t1 | AT3G44710 | 28.829 | 222 | 119 | 13 | 2 | 211 | 67 | 261 | 1.99e-11 | 66.6 |
Find 88 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTCTGATCTTACTTTAT+TGG | 0.170908 | 7.4:+35733659 | MS.gene78453:CDS |
| CAAGATAAGTCTATTGATTT+TGG | 0.197009 | 7.4:-35733769 | None:intergenic |
| TAAAAGCAAGACTTCCTTAT+TGG | 0.205142 | 7.4:+35734024 | MS.gene78453:CDS |
| TACTGGAAGCAACTACTTTA+TGG | 0.259794 | 7.4:-35734502 | None:intergenic |
| ATCTTACAACCCATTCTTTA+CGG | 0.259986 | 7.4:-35734616 | None:intergenic |
| GAGGGGTAAGCACTTGGATT+TGG | 0.284530 | 7.4:+35734142 | MS.gene78453:CDS |
| CTTCTTTGCTTCCTTTGAAT+CGG | 0.288792 | 7.4:-35733308 | None:intergenic |
| TTCTTTGCTTCCTTTGAATC+GGG | 0.303914 | 7.4:-35733307 | None:intergenic |
| TCTCTTATCAGTTGAATTGC+AGG | 0.308651 | 7.4:-35733627 | None:intergenic |
| CATTAAACGGATGTGGATAA+TGG | 0.322023 | 7.4:+35734574 | MS.gene78453:CDS |
| ATATGATCGCCTCGAATGTT+AGG | 0.359779 | 7.4:-35733825 | None:intergenic |
| TCAGAATATCCAGTCAAATC+AGG | 0.364982 | 7.4:-35733732 | None:intergenic |
| TGTGGGTTGCTATTTAAGTT+TGG | 0.366435 | 7.4:+35734095 | MS.gene78453:CDS |
| TATTCACCATGAGCAGGTAT+TGG | 0.372789 | 7.4:+35734169 | MS.gene78453:CDS |
| AGATGATGTTCAACTTCTTA+AGG | 0.373532 | 7.4:+35734397 | MS.gene78453:CDS |
| TGATGTCTTCCATCAGCAAT+AGG | 0.377148 | 7.4:-35733332 | None:intergenic |
| AGCTATTTGCGAAAATAATA+TGG | 0.377602 | 7.4:-35734716 | None:intergenic |
| TATTTCCGCAAAGTAGCATT+TGG | 0.378272 | 7.4:+35734473 | MS.gene78453:CDS |
| CATTCACATACCGTAAAGAA+TGG | 0.392139 | 7.4:+35734606 | MS.gene78453:CDS |
| CGATTTCGATTGATCCTAGT+AGG | 0.394872 | 7.4:+35733922 | MS.gene78453:CDS |
| TCGGCTGCTTTGATGTTCAA+TGG | 0.396663 | 7.4:+35734359 | MS.gene78453:CDS |
| AGATGACTCGAATTGGTATC+TGG | 0.401608 | 7.4:-35733686 | None:intergenic |
| AACAAGTAGATGACTCGAAT+TGG | 0.412396 | 7.4:-35733693 | None:intergenic |
| TTATGATAACTCCTGCAGTT+AGG | 0.415012 | 7.4:-35734004 | None:intergenic |
| TGTCATCAACAATTACTCTA+AGG | 0.421894 | 7.4:+35734544 | MS.gene78453:CDS |
| GACATAGTCATTCCTGCTTC+AGG | 0.421909 | 7.4:+35734054 | MS.gene78453:CDS |
| AGGCTATTATTGTCAAGATC+AGG | 0.427519 | 7.4:+35733800 | MS.gene78453:CDS |
| TGATGGAAGACATCAAAATA+AGG | 0.428854 | 7.4:+35733340 | MS.gene78453:CDS |
| TTCCAGTAGTTATACTCAAA+TGG | 0.440772 | 7.4:+35734517 | MS.gene78453:CDS |
| AGCAATTAGATTGCACCACT+TGG | 0.449301 | 7.4:-35734270 | None:intergenic |
| CTATGTCGTTTACACCAATA+AGG | 0.451080 | 7.4:-35734038 | None:intergenic |
| AATCATGCTGCAAAGCACTC+TGG | 0.462758 | 7.4:+35733430 | MS.gene78453:CDS |
| ATCATGCTGCAAAGCACTCT+GGG | 0.468762 | 7.4:+35733431 | MS.gene78453:CDS |
| AGTAAAACAAGAGGCGGCTC+TGG | 0.474077 | 7.4:+35734320 | MS.gene78453:CDS |
| GAATGAGAGGGGTAAGCACT+TGG | 0.479279 | 7.4:+35734136 | MS.gene78453:CDS |
| AGTGGTGCAATCTAATTGCT+TGG | 0.480560 | 7.4:+35734273 | MS.gene78453:CDS |
| GGATTATATTCACCATGAGC+AGG | 0.490494 | 7.4:+35734163 | MS.gene78453:CDS |
| TAAGGACAATAAAATTGTTG+TGG | 0.493884 | 7.4:+35734415 | MS.gene78453:CDS |
| GATGAGCAACCGAGAGCTGA+TGG | 0.499515 | 7.4:+35734448 | MS.gene78453:CDS |
| GTGGTGCAATCTAATTGCTT+GGG | 0.508981 | 7.4:+35734274 | MS.gene78453:CDS |
| AAGTTGTCTAGCTCTGGCTC+TGG | 0.509036 | 7.4:-35733591 | None:intergenic |
| ATCAGTTGAATTGCAGGACT+AGG | 0.510079 | 7.4:-35733621 | None:intergenic |
| CACCATGAGCAGGTATTGGA+AGG | 0.511193 | 7.4:+35734173 | MS.gene78453:CDS |
| AAGATGAAGTTGTCTAGCTC+TGG | 0.511262 | 7.4:-35733597 | None:intergenic |
| TTTACTTTAAGTTTGAATAC+GGG | 0.512005 | 7.4:+35734204 | MS.gene78453:CDS |
| GGTCCGATCGACACCACCCT+TGG | 0.512999 | 7.4:-35733285 | None:intergenic |
| AACCATTTGAGTATAACTAC+TGG | 0.514251 | 7.4:-35734519 | None:intergenic |
| ATTCACATACCGTAAAGAAT+GGG | 0.515105 | 7.4:+35734607 | MS.gene78453:CDS |
| TCGATCGGACCCCGATTCAA+AGG | 0.515566 | 7.4:+35733297 | MS.gene78453:CDS |
| GTCAGACGAGCATCCCTACT+AGG | 0.521457 | 7.4:-35733936 | None:intergenic |
| CAAAGAAGACCTATTGCTGA+TGG | 0.522560 | 7.4:+35733323 | MS.gene78453:CDS |
| TCGGTGTGGAAGTGTTTATG+TGG | 0.524776 | 7.4:+35734077 | MS.gene78453:CDS |
| CTTCCACACCGACCTGAAGC+AGG | 0.526792 | 7.4:-35734066 | None:intergenic |
| TGTTTCAATGTTGTTGATGT+CGG | 0.527870 | 7.4:-35733487 | None:intergenic |
| TTAGAGCTTCTGATAGCAAA+GGG | 0.533925 | 7.4:+35733552 | MS.gene78453:CDS |
| AGTAGTTATACTCAAATGGT+TGG | 0.540874 | 7.4:+35734521 | MS.gene78453:CDS |
| CAGAATATCCAGTCAAATCA+GGG | 0.550172 | 7.4:-35733731 | None:intergenic |
| GCTCTGAGGCTCCTAACTGC+AGG | 0.555488 | 7.4:+35733993 | MS.gene78453:CDS |
| CGGTGTGGAAGTGTTTATGT+GGG | 0.556911 | 7.4:+35734078 | MS.gene78453:CDS |
| ATGCCAAGGGTGGTGTCGAT+CGG | 0.557821 | 7.4:+35733282 | MS.gene78453:CDS |
| ACAAGGATGCATACATGCCA+AGG | 0.558386 | 7.4:+35733268 | None:intergenic |
| TATCTTTCTTGTGAATGAGA+GGG | 0.561146 | 7.4:+35734124 | MS.gene78453:CDS |
| TCTTTGCTTCCTTTGAATCG+GGG | 0.565971 | 7.4:-35733306 | None:intergenic |
| GATCAGGATCCTAACATTCG+AGG | 0.570010 | 7.4:+35733816 | MS.gene78453:CDS |
| GTTAGAGCTTCTGATAGCAA+AGG | 0.570634 | 7.4:+35733551 | MS.gene78453:CDS |
| CAACTCCAAATGCTACTTTG+CGG | 0.571249 | 7.4:-35734478 | None:intergenic |
| GTATCTTTCTTGTGAATGAG+AGG | 0.572032 | 7.4:+35734123 | MS.gene78453:CDS |
| AACCTTCCAATACCTGCTCA+TGG | 0.581431 | 7.4:-35734175 | None:intergenic |
| GATTTCGATTGATCCTAGTA+GGG | 0.582955 | 7.4:+35733923 | MS.gene78453:CDS |
| AACGGATGTGGATAATGGTG+TGG | 0.590421 | 7.4:+35734579 | MS.gene78453:CDS |
| ATTTGCGAAAATAATATGGT+AGG | 0.590469 | 7.4:-35734712 | None:intergenic |
| CAATTACAACTTCGTTGCAA+CGG | 0.592042 | 7.4:+35734649 | MS.gene78453:CDS |
| GGAAATACTCCATCAGCTCT+CGG | 0.592209 | 7.4:-35734457 | None:intergenic |
| ATCTTTCTTGTGAATGAGAG+GGG | 0.592694 | 7.4:+35734125 | MS.gene78453:CDS |
| TTATGAAACTTATGAAACGT+TGG | 0.599104 | 7.4:+35733407 | MS.gene78453:CDS |
| ACACAAATTATGTTAGTAGA+CGG | 0.602641 | 7.4:+35733519 | MS.gene78453:CDS |
| AACTGAATCGTTGTGCTCTG+AGG | 0.604569 | 7.4:+35733979 | MS.gene78453:CDS |
| ACTGGATATTCTGATTCAGA+TGG | 0.606172 | 7.4:+35733741 | MS.gene78453:CDS |
| TGTGATTCGAGCAAGTTATG+TGG | 0.616515 | 7.4:+35733464 | MS.gene78453:CDS |
| AATCTTCGAAGTAAAACAAG+AGG | 0.626758 | 7.4:+35734311 | MS.gene78453:CDS |
| TGGTAACTGCAAATTCACTT+CGG | 0.630962 | 7.4:+35734340 | MS.gene78453:CDS |
| CTTCGAAGTAAAACAAGAGG+CGG | 0.637907 | 7.4:+35734314 | MS.gene78453:CDS |
| TTACAACTTCGTTGCAACGG+TGG | 0.663033 | 7.4:+35734652 | MS.gene78453:CDS |
| TTGCAACGAAGTTGTAATTG+CGG | 0.663500 | 7.4:-35734646 | None:intergenic |
| CAAGGATGCATACATGCCAA+GGG | 0.663714 | 7.4:+35733269 | None:intergenic |
| ATTCCTGCTTCAGGTCGGTG+TGG | 0.665946 | 7.4:+35734063 | MS.gene78453:CDS |
| TAGTCATTCCTGCTTCAGGT+CGG | 0.667213 | 7.4:+35734058 | MS.gene78453:CDS |
| GGATGCATACATGCCAAGGG+TGG | 0.694357 | 7.4:+35733272 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTACTTTAAGTTTGAATA+CGG | + | chr7.4:35734203-35734222 | MS.gene78453:CDS | 15.0% |
| !!! | TTTACTTTAAGTTTGAATAC+GGG | + | chr7.4:35734204-35734223 | MS.gene78453:CDS | 20.0% |
| ! | ACACAAATTATGTTAGTAGA+CGG | + | chr7.4:35733519-35733538 | MS.gene78453:CDS | 25.0% |
| ! | ATTTGCGAAAATAATATGGT+AGG | - | chr7.4:35734715-35734734 | None:intergenic | 25.0% |
| ! | TAAGGACAATAAAATTGTTG+TGG | + | chr7.4:35734415-35734434 | MS.gene78453:CDS | 25.0% |
| ! | TTATGAAACTTATGAAACGT+TGG | + | chr7.4:35733407-35733426 | MS.gene78453:CDS | 25.0% |
| !! | AGACTTATCTTGTATGTTTT+AGG | + | chr7.4:35733780-35733799 | MS.gene78453:CDS | 25.0% |
| !!! | CAAGATAAGTCTATTGATTT+TGG | - | chr7.4:35733772-35733791 | None:intergenic | 25.0% |
| AACCATTTGAGTATAACTAC+TGG | - | chr7.4:35734522-35734541 | None:intergenic | 30.0% | |
| AATCTTCGAAGTAAAACAAG+AGG | + | chr7.4:35734311-35734330 | MS.gene78453:CDS | 30.0% | |
| AGATGATGTTCAACTTCTTA+AGG | + | chr7.4:35734397-35734416 | MS.gene78453:CDS | 30.0% | |
| AGTAGTTATACTCAAATGGT+TGG | + | chr7.4:35734521-35734540 | MS.gene78453:CDS | 30.0% | |
| ATCTTACAACCCATTCTTTA+CGG | - | chr7.4:35734619-35734638 | None:intergenic | 30.0% | |
| ATTCACATACCGTAAAGAAT+GGG | + | chr7.4:35734607-35734626 | MS.gene78453:CDS | 30.0% | |
| CTTGTCTGATCTTACTTTAT+TGG | + | chr7.4:35733659-35733678 | MS.gene78453:CDS | 30.0% | |
| TAAAAGCAAGACTTCCTTAT+TGG | + | chr7.4:35734024-35734043 | MS.gene78453:CDS | 30.0% | |
| TATCTTTCTTGTGAATGAGA+GGG | + | chr7.4:35734124-35734143 | MS.gene78453:CDS | 30.0% | |
| TGATGGAAGACATCAAAATA+AGG | + | chr7.4:35733340-35733359 | MS.gene78453:CDS | 30.0% | |
| TGTCATCAACAATTACTCTA+AGG | + | chr7.4:35734544-35734563 | MS.gene78453:CDS | 30.0% | |
| TGTTTCAATGTTGTTGATGT+CGG | - | chr7.4:35733490-35733509 | None:intergenic | 30.0% | |
| TTCCAGTAGTTATACTCAAA+TGG | + | chr7.4:35734517-35734536 | MS.gene78453:CDS | 30.0% | |
| !! | CTAAGGCACTTTTCATTAAA+CGG | + | chr7.4:35734561-35734580 | MS.gene78453:CDS | 30.0% |
| !!! | TGTCAACTTTTTCGTTAACA+GGG | + | chr7.4:35733857-35733876 | MS.gene78453:CDS | 30.0% |
| !!! | TTGTCAACTTTTTCGTTAAC+AGG | + | chr7.4:35733856-35733875 | MS.gene78453:CDS | 30.0% |
| AACAAGTAGATGACTCGAAT+TGG | - | chr7.4:35733696-35733715 | None:intergenic | 35.0% | |
| ACTGGATATTCTGATTCAGA+TGG | + | chr7.4:35733741-35733760 | MS.gene78453:CDS | 35.0% | |
| AGGCTATTATTGTCAAGATC+AGG | + | chr7.4:35733800-35733819 | MS.gene78453:CDS | 35.0% | |
| ATCTTTCTTGTGAATGAGAG+GGG | + | chr7.4:35734125-35734144 | MS.gene78453:CDS | 35.0% | |
| CAAAAACAACAAAAGCCAAG+TGG | + | chr7.4:35734255-35734274 | MS.gene78453:CDS | 35.0% | |
| CAATTACAACTTCGTTGCAA+CGG | + | chr7.4:35734649-35734668 | MS.gene78453:CDS | 35.0% | |
| CAGAATATCCAGTCAAATCA+GGG | - | chr7.4:35733734-35733753 | None:intergenic | 35.0% | |
| CATTAAACGGATGTGGATAA+TGG | + | chr7.4:35734574-35734593 | MS.gene78453:CDS | 35.0% | |
| CATTCACATACCGTAAAGAA+TGG | + | chr7.4:35734606-35734625 | MS.gene78453:CDS | 35.0% | |
| CTTCTTTGCTTCCTTTGAAT+CGG | - | chr7.4:35733311-35733330 | None:intergenic | 35.0% | |
| GATTTCGATTGATCCTAGTA+GGG | + | chr7.4:35733923-35733942 | MS.gene78453:CDS | 35.0% | |
| GTATCTTTCTTGTGAATGAG+AGG | + | chr7.4:35734123-35734142 | MS.gene78453:CDS | 35.0% | |
| TACTGGAAGCAACTACTTTA+TGG | - | chr7.4:35734505-35734524 | None:intergenic | 35.0% | |
| TATTTCCGCAAAGTAGCATT+TGG | + | chr7.4:35734473-35734492 | MS.gene78453:CDS | 35.0% | |
| TCAGAATATCCAGTCAAATC+AGG | - | chr7.4:35733735-35733754 | None:intergenic | 35.0% | |
| TCTCTTATCAGTTGAATTGC+AGG | - | chr7.4:35733630-35733649 | None:intergenic | 35.0% | |
| TGGTAACTGCAAATTCACTT+CGG | + | chr7.4:35734340-35734359 | MS.gene78453:CDS | 35.0% | |
| TTAGAGCTTCTGATAGCAAA+GGG | + | chr7.4:35733552-35733571 | MS.gene78453:CDS | 35.0% | |
| TTATGATAACTCCTGCAGTT+AGG | - | chr7.4:35734007-35734026 | None:intergenic | 35.0% | |
| TTCTTTGCTTCCTTTGAATC+GGG | - | chr7.4:35733310-35733329 | None:intergenic | 35.0% | |
| TTGCAACGAAGTTGTAATTG+CGG | - | chr7.4:35734649-35734668 | None:intergenic | 35.0% | |
| ! | CACTTTTCATTAAACGGATG+TGG | + | chr7.4:35734567-35734586 | MS.gene78453:CDS | 35.0% |
| ! | CTATGTCGTTTACACCAATA+AGG | - | chr7.4:35734041-35734060 | None:intergenic | 35.0% |
| !! | TGTGGGTTGCTATTTAAGTT+TGG | + | chr7.4:35734095-35734114 | MS.gene78453:CDS | 35.0% |
| AGATGACTCGAATTGGTATC+TGG | - | chr7.4:35733689-35733708 | None:intergenic | 40.0% | |
| AGCAATTAGATTGCACCACT+TGG | - | chr7.4:35734273-35734292 | None:intergenic | 40.0% | |
| AGTGGTGCAATCTAATTGCT+TGG | + | chr7.4:35734273-35734292 | MS.gene78453:CDS | 40.0% | |
| ATATGATCGCCTCGAATGTT+AGG | - | chr7.4:35733828-35733847 | None:intergenic | 40.0% | |
| ATCAGTTGAATTGCAGGACT+AGG | - | chr7.4:35733624-35733643 | None:intergenic | 40.0% | |
| CAAAGAAGACCTATTGCTGA+TGG | + | chr7.4:35733323-35733342 | MS.gene78453:CDS | 40.0% | |
| CGATTTCGATTGATCCTAGT+AGG | + | chr7.4:35733922-35733941 | MS.gene78453:CDS | 40.0% | |
| CTTCGAAGTAAAACAAGAGG+CGG | + | chr7.4:35734314-35734333 | MS.gene78453:CDS | 40.0% | |
| GGATTATATTCACCATGAGC+AGG | + | chr7.4:35734163-35734182 | MS.gene78453:CDS | 40.0% | |
| GTGGTGCAATCTAATTGCTT+GGG | + | chr7.4:35734274-35734293 | MS.gene78453:CDS | 40.0% | |
| GTTAGAGCTTCTGATAGCAA+AGG | + | chr7.4:35733551-35733570 | MS.gene78453:CDS | 40.0% | |
| TATTCACCATGAGCAGGTAT+TGG | + | chr7.4:35734169-35734188 | MS.gene78453:CDS | 40.0% | |
| TCTTTGCTTCCTTTGAATCG+GGG | - | chr7.4:35733309-35733328 | None:intergenic | 40.0% | |
| TGATGTCTTCCATCAGCAAT+AGG | - | chr7.4:35733335-35733354 | None:intergenic | 40.0% | |
| TGTGATTCGAGCAAGTTATG+TGG | + | chr7.4:35733464-35733483 | MS.gene78453:CDS | 40.0% | |
| ! | AAGATGAAGTTGTCTAGCTC+TGG | - | chr7.4:35733600-35733619 | None:intergenic | 40.0% |
| !! | ACACTTTTCCCTGATTTGAC+TGG | + | chr7.4:35733723-35733742 | MS.gene78453:CDS | 40.0% |
| !! | CAACTCCAAATGCTACTTTG+CGG | - | chr7.4:35734481-35734500 | None:intergenic | 40.0% |
| AACCTTCCAATACCTGCTCA+TGG | - | chr7.4:35734178-35734197 | None:intergenic | 45.0% | |
| AACTGAATCGTTGTGCTCTG+AGG | + | chr7.4:35733979-35733998 | MS.gene78453:CDS | 45.0% | |
| GACATAGTCATTCCTGCTTC+AGG | + | chr7.4:35734054-35734073 | MS.gene78453:CDS | 45.0% | |
| GATCAGGATCCTAACATTCG+AGG | + | chr7.4:35733816-35733835 | MS.gene78453:CDS | 45.0% | |
| GGAAATACTCCATCAGCTCT+CGG | - | chr7.4:35734460-35734479 | None:intergenic | 45.0% | |
| TAGTCATTCCTGCTTCAGGT+CGG | + | chr7.4:35734058-35734077 | MS.gene78453:CDS | 45.0% | |
| TTACAACTTCGTTGCAACGG+TGG | + | chr7.4:35734652-35734671 | MS.gene78453:CDS | 45.0% | |
| ! | AACGGATGTGGATAATGGTG+TGG | + | chr7.4:35734579-35734598 | MS.gene78453:CDS | 45.0% |
| ! | AATCATGCTGCAAAGCACTC+TGG | + | chr7.4:35733430-35733449 | MS.gene78453:CDS | 45.0% |
| ! | ATCATGCTGCAAAGCACTCT+GGG | + | chr7.4:35733431-35733450 | MS.gene78453:CDS | 45.0% |
| ! | TCGGCTGCTTTGATGTTCAA+TGG | + | chr7.4:35734359-35734378 | MS.gene78453:CDS | 45.0% |
| !! | CGGTGTGGAAGTGTTTATGT+GGG | + | chr7.4:35734078-35734097 | MS.gene78453:CDS | 45.0% |
| !! | TCGGTGTGGAAGTGTTTATG+TGG | + | chr7.4:35734077-35734096 | MS.gene78453:CDS | 45.0% |
| AGTAAAACAAGAGGCGGCTC+TGG | + | chr7.4:35734320-35734339 | MS.gene78453:CDS | 50.0% | |
| GAATGAGAGGGGTAAGCACT+TGG | + | chr7.4:35734136-35734155 | MS.gene78453:CDS | 50.0% | |
| GAGGGGTAAGCACTTGGATT+TGG | + | chr7.4:35734142-35734161 | MS.gene78453:CDS | 50.0% | |
| !! | AAGTTGTCTAGCTCTGGCTC+TGG | - | chr7.4:35733594-35733613 | None:intergenic | 50.0% |
| !! | CACCATGAGCAGGTATTGGA+AGG | + | chr7.4:35734173-35734192 | MS.gene78453:CDS | 50.0% |
| ATTCCTGCTTCAGGTCGGTG+TGG | + | chr7.4:35734063-35734082 | MS.gene78453:CDS | 55.0% | |
| GATGAGCAACCGAGAGCTGA+TGG | + | chr7.4:35734448-35734467 | MS.gene78453:CDS | 55.0% | |
| GTCAGACGAGCATCCCTACT+AGG | - | chr7.4:35733939-35733958 | None:intergenic | 55.0% | |
| TCGATCGGACCCCGATTCAA+AGG | + | chr7.4:35733297-35733316 | MS.gene78453:CDS | 55.0% | |
| !! | ATGCCAAGGGTGGTGTCGAT+CGG | + | chr7.4:35733282-35733301 | MS.gene78453:CDS | 55.0% |
| CTTCCACACCGACCTGAAGC+AGG | - | chr7.4:35734069-35734088 | None:intergenic | 60.0% | |
| !! | GCTCTGAGGCTCCTAACTGC+AGG | + | chr7.4:35733993-35734012 | MS.gene78453:CDS | 60.0% |
| GGTCCGATCGACACCACCCT+TGG | - | chr7.4:35733288-35733307 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 35733282 | 35734736 | 35733282 | ID=MS.gene78453 |
| chr7.4 | mRNA | 35733282 | 35734736 | 35733282 | ID=MS.gene78453.t1;Parent=MS.gene78453 |
| chr7.4 | exon | 35733282 | 35734736 | 35733282 | ID=MS.gene78453.t1.exon1;Parent=MS.gene78453.t1 |
| chr7.4 | CDS | 35733282 | 35734736 | 35733282 | ID=cds.MS.gene78453.t1;Parent=MS.gene78453.t1 |
| Gene Sequence |
| Protein sequence |
