AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78469

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78469.t1 MTR_2g097210 96.501 343 11 1 1 343 1 342 0.0 677
MS.gene78469.t1 MTR_2g097210 96.346 301 10 1 1 301 1 300 0.0 586
MS.gene78469.t1 MTR_4g021755 64.706 306 105 2 37 342 34 336 1.09e-150 430
MS.gene78469.t1 MTR_7g498280 59.412 340 122 3 1 338 1 326 4.60e-128 370
MS.gene78469.t1 MTR_7g061780 61.311 305 112 3 23 326 4 303 2.86e-125 363
MS.gene78469.t1 MTR_1g101310 53.191 329 135 3 16 339 5 319 4.79e-114 333
MS.gene78469.t1 MTR_2g103600 55.636 275 114 3 44 312 30 302 2.18e-99 296
MS.gene78469.t1 MTR_3g073530 40.533 338 188 5 13 343 9 340 1.37e-79 248
MS.gene78469.t1 MTR_2g088290 36.462 277 116 7 65 340 1 218 7.73e-43 148
MS.gene78469.t1 MTR_2g088315 49.398 83 42 0 108 190 1 83 2.07e-20 84.7
MS.gene78469.t1 MTR_8g106030 37.931 145 73 3 177 320 99 227 9.23e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78469.t1 AT2G29050 63.905 338 119 2 6 343 15 349 3.31e-157 446
MS.gene78469.t1 AT3G53780 62.662 308 107 2 35 342 54 353 1.59e-137 396
MS.gene78469.t1 AT1G63120 63.946 294 98 2 44 335 30 317 2.93e-129 372
MS.gene78469.t1 AT2G29050 58.104 327 106 3 6 304 15 338 2.78e-126 366
MS.gene78469.t1 AT5G07250 60.061 328 116 3 21 337 22 345 2.00e-125 363
MS.gene78469.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene78469.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene78469.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene78469.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene78469.t1 AT1G12750 55.882 306 130 2 32 335 5 307 8.77e-123 355
MS.gene78469.t1 AT3G53780 62.547 267 92 2 35 301 54 312 1.29e-114 335
MS.gene78469.t1 AT3G53780 63.559 236 80 1 108 343 1 230 9.98e-108 316
MS.gene78469.t1 AT1G52580 54.545 297 126 6 20 311 4 296 6.52e-98 292
MS.gene78469.t1 AT4G23070 55.326 291 125 2 44 334 28 313 2.37e-94 283
MS.gene78469.t1 AT5G07250 49.695 328 103 4 21 337 22 298 4.31e-89 270
MS.gene78469.t1 AT1G77860 45.151 299 159 4 48 343 49 345 3.77e-85 261
MS.gene78469.t1 AT1G77860 45.151 299 159 4 48 343 49 345 8.09e-85 261
MS.gene78469.t1 AT1G12750 60.000 185 72 1 32 214 5 189 6.47e-77 235
MS.gene78469.t1 AT1G12750 59.574 188 74 1 32 217 5 192 9.39e-77 234

Find 83 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCGGCTTGAACAAGAATT+TGG 0.175005 2.2:-5082557 MS.gene78469:CDS
TGATTCGTCCTCAGTTTAAA+TGG 0.238851 2.2:-5081912 MS.gene78469:CDS
CTCTATGTGATATCTGGTTT+TGG 0.246364 2.2:-5082309 MS.gene78469:CDS
GGATTTCTCTATGTGATATC+TGG 0.262897 2.2:-5082315 MS.gene78469:CDS
TCTCAGAGCTCTTCATTAAT+TGG 0.278075 2.2:-5082200 MS.gene78469:CDS
TCTTTCCTATTACTCATTGC+AGG 0.286895 2.2:-5081799 MS.gene78469:CDS
CTTACCCTGCAATGAGTAAT+AGG 0.292148 2.2:+5081794 None:intergenic
TTCGCTCATCTAGGAGGATT+TGG 0.297054 2.2:-5081964 MS.gene78469:CDS
GGCGCCTTGTCTCTTGTATA+TGG 0.304879 2.2:-5082637 MS.gene78469:CDS
CTTGAACAAGAATTTGGATT+TGG 0.310501 2.2:-5082551 MS.gene78469:intron
CATCTAGGAGGATTTGGTTC+TGG 0.319719 2.2:-5081958 MS.gene78469:CDS
TCACTCGTGATCGTGATTTC+AGG 0.355861 2.2:-5083777 MS.gene78469:CDS
CTTAAAGAAAACCCTCTCTT+TGG 0.366436 2.2:-5083601 MS.gene78469:CDS
TGGCACCACCGTTGAGGTTA+AGG 0.367443 2.2:-5083848 MS.gene78469:CDS
GGCATCTCAGTTGGTGCATC+TGG 0.372637 2.2:-5082252 MS.gene78469:CDS
TTTGGTTCTGGCTTTCTGCT+TGG 0.373387 2.2:-5081946 MS.gene78469:CDS
CTTGTATATGGTTGCATGGT+GGG 0.379600 2.2:-5082625 MS.gene78469:CDS
TGTCCTTTCGCAGTTAGAAT+TGG 0.379685 2.2:-5082336 MS.gene78469:intron
TTGGACGATATATGCCAATA+AGG 0.382911 2.2:-5082181 MS.gene78469:intron
GGTGCATCTGGTGCATTGTT+TGG 0.382955 2.2:-5082240 MS.gene78469:CDS
AGCCAACAACAGTCTAAATC+TGG 0.385356 2.2:-5081886 MS.gene78469:CDS
ACCTTATCAATATGTGTTGT+GGG 0.394616 2.2:-5081827 MS.gene78469:CDS
ATCCAGATTTAGACTGTTGT+TGG 0.400472 2.2:+5081884 None:intergenic
GTTGTGTTCCTACCTCAAAA+TGG 0.409054 2.2:-5081547 MS.gene78469:CDS
GTTGTAATAAATTTAGCTGT+TGG 0.441288 2.2:-5082009 MS.gene78469:CDS
GTCTGCGTTATTCATACAAA+CGG 0.445629 2.2:-5082274 MS.gene78469:CDS
TGTCCTGAGAATGCATTTCA+TGG 0.455723 2.2:-5083667 MS.gene78469:CDS
TACCTTATCAATATGTGTTG+TGG 0.455869 2.2:-5081828 MS.gene78469:CDS
GGTGCATTGTTTGGCTTACT+CGG 0.462230 2.2:-5082231 MS.gene78469:CDS
TTTCAGGCTCTTTAAGCAAT+GGG 0.470163 2.2:-5083761 MS.gene78469:CDS
GTTGACAATTTCGCTCATCT+AGG 0.472592 2.2:-5081973 MS.gene78469:CDS
GTCTCTTGTATATGGTTGCA+TGG 0.482616 2.2:-5082629 MS.gene78469:CDS
AAGGAGAATCTTCCAAGAAA+AGG 0.495328 2.2:+5083631 None:intergenic
TCTTTAAGCAATGGGTTCCA+TGG 0.504864 2.2:-5083753 MS.gene78469:CDS
ACCCACAACACATATTGATA+AGG 0.507027 2.2:+5081826 None:intergenic
TACCTCAAAATGGAGTTGTC+AGG 0.507679 2.2:-5081537 MS.gene78469:CDS
GGGATGGTTCTACTCTTTCG+AGG 0.511587 2.2:-5081611 MS.gene78469:CDS
ATTTCAGGCTCTTTAAGCAA+TGG 0.516293 2.2:-5083762 MS.gene78469:CDS
CATTGTTTGGCTTACTCGGA+GGG 0.524954 2.2:-5082227 MS.gene78469:CDS
ACGTTGGCAAACACAAAAGT+TGG 0.526318 2.2:+5083724 None:intergenic
CTTTCCTATTACTCATTGCA+GGG 0.535119 2.2:-5081798 MS.gene78469:intron
GTACCATGAAATGCATTCTC+AGG 0.536653 2.2:+5083664 None:intergenic
TCAACATGTTGGCAAGTACA+TGG 0.537008 2.2:+5082597 None:intergenic
AAATCACGATCACGAGTGAC+GGG 0.541550 2.2:+5083781 None:intergenic
TGACAGATTCATTACTGGGA+TGG 0.543513 2.2:-5081627 MS.gene78469:intron
TAAACTGAGGACGAATCAAA+AGG 0.544513 2.2:+5081917 None:intergenic
TGCTCTAGAAGTAGATAAAG+TGG 0.545530 2.2:-5082678 MS.gene78469:CDS
AAAACTCACGTAAAGGAAGA+AGG 0.547703 2.2:+5083577 None:intergenic
GACAATTTCGCTCATCTAGG+AGG 0.549429 2.2:-5081970 MS.gene78469:CDS
TCTGCGTTATTCATACAAAC+GGG 0.553724 2.2:-5082273 MS.gene78469:CDS
ACAAAAGTTGGAACAAGCCA+TGG 0.556908 2.2:+5083736 None:intergenic
ATACAAACGGGCATCTCAGT+TGG 0.569101 2.2:-5082261 MS.gene78469:CDS
GAAATCACGATCACGAGTGA+CGG 0.572889 2.2:+5083780 None:intergenic
ACGACGAAGACGGAGACCCA+CGG 0.573842 2.2:+5083815 None:intergenic
TCAACGGTGGTGCCACCATG+TGG 0.575383 2.2:+5083856 None:intergenic
AAATCATAATCATGAGTGGA+GGG 0.582372 2.2:-5083885 None:intergenic
TTGTATATGGTTGCATGGTG+GGG 0.585338 2.2:-5082624 MS.gene78469:CDS
AGGAAGAAGGACCAAAGAGA+GGG 0.589526 2.2:+5083590 None:intergenic
TGGTTCATGAACACGAAGGT+TGG 0.597343 2.2:-5082658 MS.gene78469:CDS
AACAATGAAAATAATAACGT+TGG 0.597447 2.2:+5083708 None:intergenic
GGAACAAAGCATTTATTGTG+AGG 0.597670 2.2:-5081516 None:intergenic
TTAAGGTTCATCCTCGCCGT+GGG 0.597978 2.2:-5083831 MS.gene78469:CDS
TCTTGTATATGGTTGCATGG+TGG 0.604832 2.2:-5082626 MS.gene78469:CDS
GCATTGTTTGGCTTACTCGG+AGG 0.606501 2.2:-5082228 MS.gene78469:CDS
GTTAAGGTTCATCCTCGCCG+TGG 0.606777 2.2:-5083832 MS.gene78469:CDS
CGAAATTGTCAACATGTGGA+AGG 0.611940 2.2:+5081983 None:intergenic
TGAGCGAAATTGTCAACATG+TGG 0.615330 2.2:+5081979 None:intergenic
GGATTCGACGACGACGAAGA+CGG 0.615599 2.2:+5083805 None:intergenic
CAACGGTGGTGCCACCATGT+GGG 0.618108 2.2:+5083857 None:intergenic
ACATGGTGGCACCACCGTTG+AGG 0.621441 2.2:-5083854 MS.gene78469:CDS
AAGGAAGAAGGACCAAAGAG+AGG 0.633246 2.2:+5083589 None:intergenic
TGGCTTATCCATTTAAACTG+AGG 0.633333 2.2:+5081904 None:intergenic
AAAATCATAATCATGAGTGG+AGG 0.633390 2.2:-5083886 None:intergenic
TCACGATCACGAGTGACGGG+AGG 0.634822 2.2:+5083784 None:intergenic
ACTTGAATGAACGTTGCTCG+TGG 0.663668 2.2:-5081583 MS.gene78469:CDS
AGGATGAACCTTAACCTCAA+CGG 0.671763 2.2:+5083840 None:intergenic
TCATAATCATGAGTGGAGGG+AGG 0.674267 2.2:-5083882 None:intergenic
GAAGACGGAGACCCACGGCG+AGG 0.680052 2.2:+5083820 None:intergenic
AGTGGAGGGAGGAACCCACA+TGG 0.690830 2.2:-5083871 MS.gene78469:CDS
GCAACCATATACAAGAGACA+AGG 0.709780 2.2:+5082633 None:intergenic
ATGAACCTTAACCTCAACGG+TGG 0.726735 2.2:+5083843 None:intergenic
GGAGGGAGGAACCCACATGG+TGG 0.736064 2.2:-5083868 MS.gene78469:CDS
AAAGTGGTTCATGAACACGA+AGG 0.793505 2.2:-5082662 MS.gene78469:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGACAATAAATTATTTATC+AGG + chr2.2:5083274-5083293 None:intergenic 15.0%
!! AATGATATAAATACAGATAA+TGG + chr2.2:5082933-5082952 None:intergenic 15.0%
!! ATATTACCTTTAATATTCTT+AGG - chr2.2:5083648-5083667 MS.gene78469:CDS 15.0%
!! TAAATAATTTATTGTCTTTG+CGG - chr2.2:5083276-5083295 MS.gene78469:intron 15.0%
!! AACAATGAAAATAATAACGT+TGG + chr2.2:5081686-5081705 None:intergenic 20.0%
!! ATGAACATGTGTTTATAAAT+GGG - chr2.2:5082263-5082282 MS.gene78469:CDS 20.0%
!! TACATTAATCAAGTTATGAT+TGG - chr2.2:5081920-5081939 MS.gene78469:CDS 20.0%
!!! AGTAGTATTTAATCTAAAGT+TGG - chr2.2:5083734-5083753 MS.gene78469:CDS 20.0%
!!! TTGTTTTTACATAAATGTTC+TGG - chr2.2:5082951-5082970 MS.gene78469:intron 20.0%
! CAAAATGGAAAGAAATAGAA+TGG + chr2.2:5083314-5083333 None:intergenic 25.0%
! CATGAACATGTGTTTATAAA+TGG - chr2.2:5082262-5082281 MS.gene78469:CDS 25.0%
! GCTATTGCAAATACATAATT+TGG + chr2.2:5082584-5082603 None:intergenic 25.0%
! GTTGTAATAAATTTAGCTGT+TGG - chr2.2:5083382-5083401 MS.gene78469:intron 25.0%
! TATCTGCCTAAAATTAAGAT+TGG + chr2.2:5082619-5082638 None:intergenic 25.0%
! TATGTATTTGCAATAGCTAA+TGG - chr2.2:5082587-5082606 MS.gene78469:CDS 25.0%
! TGAACATGTGTTTATAAATG+GGG - chr2.2:5082264-5082283 MS.gene78469:CDS 25.0%
! TTAATCAAGTTATGATTGGT+TGG - chr2.2:5081924-5081943 MS.gene78469:CDS 25.0%
! TTCATAGATTACATTCTCTA+TGG - chr2.2:5082505-5082524 MS.gene78469:intron 25.0%
!! ACAGTACCAATCTTAATTTT+AGG - chr2.2:5082610-5082629 MS.gene78469:CDS 25.0%
!! ATGTTGAGTCTTCTTTTTAT+TGG - chr2.2:5082810-5082829 MS.gene78469:intron 25.0%
!! GTCTTCTTTTTATTGGAATT+CGG - chr2.2:5082817-5082836 MS.gene78469:intron 25.0%
!!! AATTTTGACAGATTCATTAC+TGG - chr2.2:5083759-5083778 MS.gene78469:CDS 25.0%
!!! ATTTTGACAGATTCATTACT+GGG - chr2.2:5083760-5083779 MS.gene78469:CDS 25.0%
!!! TTTTAGTTCATTCACCTTAT+TGG + chr2.2:5083227-5083246 None:intergenic 25.0%
AAAAACCTAATAGATGTGTG+AGG - chr2.2:5082446-5082465 MS.gene78469:intron 30.0%
AAAAAGAAGACTCAACATGT+TGG + chr2.2:5082808-5082827 None:intergenic 30.0%
AAAACCTAATAGATGTGTGA+GGG - chr2.2:5082447-5082466 MS.gene78469:intron 30.0%
AACAAAAACGTGTGTTTGTA+AGG - chr2.2:5082405-5082424 MS.gene78469:intron 30.0%
AACATGTGTTTATAAATGGG+GGG - chr2.2:5082266-5082285 MS.gene78469:CDS 30.0%
ACCTTATCAATATGTGTTGT+GGG - chr2.2:5083564-5083583 MS.gene78469:intron 30.0%
CAAAACATCATGAGACAAAA+TGG + chr2.2:5083329-5083348 None:intergenic 30.0%
CCAAGTCCTAAGAATATTAA+AGG + chr2.2:5083657-5083676 None:intergenic 30.0%
CCTTTAATATTCTTAGGACT+TGG - chr2.2:5083654-5083673 MS.gene78469:CDS 30.0%
CTTGAACAAGAATTTGGATT+TGG - chr2.2:5082840-5082859 MS.gene78469:intron 30.0%
GAAAAAGAAAACTCACGTAA+AGG + chr2.2:5081824-5081843 None:intergenic 30.0%
GAACATGTGTTTATAAATGG+GGG - chr2.2:5082265-5082284 MS.gene78469:CDS 30.0%
GAATGTAATCTATGAATCAC+CGG + chr2.2:5082501-5082520 None:intergenic 30.0%
GGAAAGAAATAGAATGGTTT+AGG + chr2.2:5083308-5083327 None:intergenic 30.0%
TACCTTATCAATATGTGTTG+TGG - chr2.2:5083563-5083582 MS.gene78469:intron 30.0%
TGAGAATGAGTTTATTAGTG+TGG - chr2.2:5082045-5082064 MS.gene78469:intron 30.0%
TTAATATTTACTCCTTCGTC+CGG + chr2.2:5082351-5082370 None:intergenic 30.0%
! ACAAGAATTTGGATTTGGTA+TGG - chr2.2:5082845-5082864 MS.gene78469:intron 30.0%
! ACACTTTAGATGTCTAAGAT+TGG - chr2.2:5082198-5082217 MS.gene78469:CDS 30.0%
! ACTTTAGATGTCTAAGATTG+GGG - chr2.2:5082200-5082219 MS.gene78469:CDS 30.0%
! ATTTTCAGATTACAGGAGAT+GGG - chr2.2:5082690-5082709 MS.gene78469:CDS 30.0%
! CACTTTAGATGTCTAAGATT+GGG - chr2.2:5082199-5082218 MS.gene78469:CDS 30.0%
! GTTTTCTTTAAGTGGTTGAA+AGG + chr2.2:5081782-5081801 None:intergenic 30.0%
! TTTTAGGCAGATATATCTCT+TGG - chr2.2:5082626-5082645 MS.gene78469:CDS 30.0%
!! AGTTAAATTGATTCGAGCTA+AGG - chr2.2:5082295-5082314 MS.gene78469:CDS 30.0%
!! GTTAAATTGATTCGAGCTAA+GGG - chr2.2:5082296-5082315 MS.gene78469:CDS 30.0%
!! TACAGATAATGGAATACTGT+TGG + chr2.2:5082922-5082941 None:intergenic 30.0%
AAAACTCACGTAAAGGAAGA+AGG + chr2.2:5081817-5081836 None:intergenic 35.0%
AAGGAGAATCTTCCAAGAAA+AGG + chr2.2:5081763-5081782 None:intergenic 35.0%
AATCCAATTCTAACTGCGAA+AGG + chr2.2:5083061-5083080 None:intergenic 35.0%
ACCCACAACACATATTGATA+AGG + chr2.2:5083568-5083587 None:intergenic 35.0%
ATCCAGATTTAGACTGTTGT+TGG + chr2.2:5083510-5083529 None:intergenic 35.0%
ATTTCAGGCTCTTTAAGCAA+TGG - chr2.2:5081629-5081648 MS.gene78469:intron 35.0%
CGATATACTTGAACAATGCA+AGG + chr2.2:5082884-5082903 None:intergenic 35.0%
CTTAAAGAAAACCCTCTCTT+TGG - chr2.2:5081790-5081809 MS.gene78469:intron 35.0%
CTTTCCTATTACTCATTGCA+GGG - chr2.2:5083593-5083612 MS.gene78469:CDS 35.0%
GGATTTCTCTATGTGATATC+TGG - chr2.2:5083076-5083095 MS.gene78469:intron 35.0%
GTCTGCGTTATTCATACAAA+CGG - chr2.2:5083117-5083136 MS.gene78469:intron 35.0%
TAAACTGAGGACGAATCAAA+AGG + chr2.2:5083477-5083496 None:intergenic 35.0%
TAATATTTACTCCTTCGTCC+GGG + chr2.2:5082350-5082369 None:intergenic 35.0%
TCTCAGAGCTCTTCATTAAT+TGG - chr2.2:5083191-5083210 MS.gene78469:intron 35.0%
TCTGCGTTATTCATACAAAC+GGG - chr2.2:5083118-5083137 MS.gene78469:intron 35.0%
TCTTTCCTATTACTCATTGC+AGG - chr2.2:5083592-5083611 MS.gene78469:CDS 35.0%
TGATTCGTCCTCAGTTTAAA+TGG - chr2.2:5083479-5083498 MS.gene78469:intron 35.0%
TGGCTTATCCATTTAAACTG+AGG + chr2.2:5083490-5083509 None:intergenic 35.0%
TTGGACGATATATGCCAATA+AGG - chr2.2:5083210-5083229 MS.gene78469:intron 35.0%
TTTCAGGCTCTTTAAGCAAT+GGG - chr2.2:5081630-5081649 MS.gene78469:intron 35.0%
! AAGAGAGGGTTTTCTTTAAG+TGG + chr2.2:5081790-5081809 None:intergenic 35.0%
! ATTCGGCTTGAACAAGAATT+TGG - chr2.2:5082834-5082853 MS.gene78469:intron 35.0%
! ATTTGGATTTGGTATGGTTC+TGG - chr2.2:5082851-5082870 MS.gene78469:intron 35.0%
! CATTTTCAGATTACAGGAGA+TGG - chr2.2:5082689-5082708 MS.gene78469:CDS 35.0%
! CTTTAGATGTCTAAGATTGG+GGG - chr2.2:5082201-5082220 MS.gene78469:CDS 35.0%
! TACTCGCATTTTCAGATTAC+AGG - chr2.2:5082683-5082702 MS.gene78469:CDS 35.0%
!! CTCTATGTGATATCTGGTTT+TGG - chr2.2:5083082-5083101 MS.gene78469:intron 35.0%
!! GATAATGGAATACTGTTGGT+CGG + chr2.2:5082918-5082937 None:intergenic 35.0%
!! TGCTCTAGAAGTAGATAAAG+TGG - chr2.2:5082713-5082732 MS.gene78469:intron 35.0%
!!! ATGTGATATCTGGTTTTGGA+GGG - chr2.2:5083086-5083105 MS.gene78469:intron 35.0%
!!! TATGTGATATCTGGTTTTGG+AGG - chr2.2:5083085-5083104 MS.gene78469:intron 35.0%
AAAGTGGTTCATGAACACGA+AGG - chr2.2:5082729-5082748 MS.gene78469:intron 40.0%
ACAAAAGTTGGAACAAGCCA+TGG + chr2.2:5081658-5081677 None:intergenic 40.0%
ACAACCCTCACACATCTATT+AGG + chr2.2:5082454-5082473 None:intergenic 40.0%
ACGTTGGCAAACACAAAAGT+TGG + chr2.2:5081670-5081689 None:intergenic 40.0%
AGCCAACAACAGTCTAAATC+TGG - chr2.2:5083505-5083524 MS.gene78469:intron 40.0%
AGGATGAACCTTAACCTCAA+CGG + chr2.2:5081554-5081573 None:intergenic 40.0%
CGAAATTGTCAACATGTGGA+AGG + chr2.2:5083411-5083430 None:intergenic 40.0%
CTTACCCTGCAATGAGTAAT+AGG + chr2.2:5083600-5083619 None:intergenic 40.0%
CTTGTATATGGTTGCATGGT+GGG - chr2.2:5082766-5082785 MS.gene78469:intron 40.0%
GCAACCATATACAAGAGACA+AGG + chr2.2:5082761-5082780 None:intergenic 40.0%
GCCTAACTCATTCACAAAAC+TGG + chr2.2:5082090-5082109 None:intergenic 40.0%
GTACCATGAAATGCATTCTC+AGG + chr2.2:5081730-5081749 None:intergenic 40.0%
GTCTCTTGTATATGGTTGCA+TGG - chr2.2:5082762-5082781 MS.gene78469:intron 40.0%
GTGTGTTTGTAAGGATGCAT+AGG - chr2.2:5082414-5082433 MS.gene78469:intron 40.0%
GTGTTTATAAATGGGGGGTT+GGG - chr2.2:5082271-5082290 MS.gene78469:CDS 40.0%
GTTGACAATTTCGCTCATCT+AGG - chr2.2:5083418-5083437 MS.gene78469:intron 40.0%
GTTGTGTTCCTACCTCAAAA+TGG - chr2.2:5083844-5083863 MS.gene78469:CDS 40.0%
TAACTGCGAAAGGACAAGAA+AGG + chr2.2:5083051-5083070 None:intergenic 40.0%
TACCTCAAAATGGAGTTGTC+AGG - chr2.2:5083854-5083873 MS.gene78469:CDS 40.0%
TCAACATGTTGGCAAGTACA+TGG + chr2.2:5082797-5082816 None:intergenic 40.0%
TCTTGTATATGGTTGCATGG+TGG - chr2.2:5082765-5082784 MS.gene78469:intron 40.0%
TGACAGATTCATTACTGGGA+TGG - chr2.2:5083764-5083783 MS.gene78469:CDS 40.0%
TGAGCGAAATTGTCAACATG+TGG + chr2.2:5083415-5083434 None:intergenic 40.0%
TGTCCTGAGAATGCATTTCA+TGG - chr2.2:5081724-5081743 MS.gene78469:intron 40.0%
TGTCCTTTCGCAGTTAGAAT+TGG - chr2.2:5083055-5083074 MS.gene78469:intron 40.0%
TGTGTTTATAAATGGGGGGT+TGG - chr2.2:5082270-5082289 MS.gene78469:CDS 40.0%
TTGTATATGGTTGCATGGTG+GGG - chr2.2:5082767-5082786 MS.gene78469:intron 40.0%
! ATGTCTAAGATTGGGGGTAA+GGG - chr2.2:5082207-5082226 MS.gene78469:CDS 40.0%
! GTCTCATGATGTTTTGCAGA+TGG - chr2.2:5083333-5083352 MS.gene78469:intron 40.0%
! TCTTTAAGCAATGGGTTCCA+TGG - chr2.2:5081638-5081657 MS.gene78469:intron 40.0%
! TTCCTGACAACTCCATTTTG+AGG + chr2.2:5083859-5083878 None:intergenic 40.0%
!! ACTTGTGTTGCTCCTTTTCT+TGG - chr2.2:5081748-5081767 MS.gene78469:intron 40.0%
!! GCCAGTTTTGTGAATGAGTT+AGG - chr2.2:5082086-5082105 MS.gene78469:intron 40.0%
!!! TGACAACTCCATTTTGAGGT+AGG + chr2.2:5083855-5083874 None:intergenic 40.0%
AAATCACGATCACGAGTGAC+GGG + chr2.2:5081613-5081632 None:intergenic 45.0%
AAGGAAGAAGGACCAAAGAG+AGG + chr2.2:5081805-5081824 None:intergenic 45.0%
ACTTGAATGAACGTTGCTCG+TGG - chr2.2:5083808-5083827 MS.gene78469:CDS 45.0%
AGGAAGAAGGACCAAAGAGA+GGG + chr2.2:5081804-5081823 None:intergenic 45.0%
ATACAAACGGGCATCTCAGT+TGG - chr2.2:5083130-5083149 MS.gene78469:intron 45.0%
ATGAACCTTAACCTCAACGG+TGG + chr2.2:5081551-5081570 None:intergenic 45.0%
CGAGCTAAGGGATAAGAAGT+TGG - chr2.2:5082308-5082327 MS.gene78469:CDS 45.0%
GAAATCACGATCACGAGTGA+CGG + chr2.2:5081614-5081633 None:intergenic 45.0%
GACAATTTCGCTCATCTAGG+AGG - chr2.2:5083421-5083440 MS.gene78469:intron 45.0%
GCTAAGGGATAAGAAGTTGG+AGG - chr2.2:5082311-5082330 MS.gene78469:CDS 45.0%
TCACTCGTGATCGTGATTTC+AGG - chr2.2:5081614-5081633 MS.gene78469:CDS 45.0%
TCTTGTGTCTGTGTCTCTAC+CGG - chr2.2:5082479-5082498 MS.gene78469:intron 45.0%
TGGTTCATGAACACGAAGGT+TGG - chr2.2:5082733-5082752 MS.gene78469:intron 45.0%
TTCGCTCATCTAGGAGGATT+TGG - chr2.2:5083427-5083446 MS.gene78469:intron 45.0%
! CATCTAAAGTGTGACTCGTG+TGG + chr2.2:5082190-5082209 None:intergenic 45.0%
! CATCTAGGAGGATTTGGTTC+TGG - chr2.2:5083433-5083452 MS.gene78469:intron 45.0%
! CATTGTTTGGCTTACTCGGA+GGG - chr2.2:5083164-5083183 MS.gene78469:intron 45.0%
! GATGTCTAAGATTGGGGGTA+AGG - chr2.2:5082206-5082225 MS.gene78469:CDS 45.0%
! GGTGCATTGTTTGGCTTACT+CGG - chr2.2:5083160-5083179 MS.gene78469:intron 45.0%
!! GGAGGTTCTAAGTTCAAACC+CGG - chr2.2:5082329-5082348 MS.gene78469:intron 45.0%
!! TTTGGTTCTGGCTTTCTGCT+TGG - chr2.2:5083445-5083464 MS.gene78469:intron 45.0%
CTAAGTTCAAACCCGGACGA+AGG - chr2.2:5082336-5082355 MS.gene78469:intron 50.0%
GCTATCTGGCCACCATTATC+AGG - chr2.2:5082164-5082183 MS.gene78469:intron 50.0%
GGCGCCTTGTCTCTTGTATA+TGG - chr2.2:5082754-5082773 MS.gene78469:intron 50.0%
GGTGCATCTGGTGCATTGTT+TGG - chr2.2:5083151-5083170 MS.gene78469:intron 50.0%
TGACTCGTGTGGCCTGATAA+TGG + chr2.2:5082179-5082198 None:intergenic 50.0%
TTAAGGTTCATCCTCGCCGT+GGG - chr2.2:5081560-5081579 MS.gene78469:CDS 50.0%
! GATAATGGTGGCCAGATAGC+AGG + chr2.2:5082164-5082183 None:intergenic 50.0%
! GCATTGTTTGGCTTACTCGG+AGG - chr2.2:5083163-5083182 MS.gene78469:intron 50.0%
! GGGATGGTTCTACTCTTTCG+AGG - chr2.2:5083780-5083799 MS.gene78469:CDS 50.0%
AATGGTGGCCAGATAGCAGG+CGG + chr2.2:5082161-5082180 None:intergenic 55.0%
CCAGATAGCAGGCGGTTCAA+TGG + chr2.2:5082153-5082172 None:intergenic 55.0%
CCATTGAACCGCCTGCTATC+TGG - chr2.2:5082150-5082169 MS.gene78469:intron 55.0%
GCAGGCGGTTCAATGGATCT+TGG + chr2.2:5082146-5082165 None:intergenic 55.0%
GGATTCGACGACGACGAAGA+CGG + chr2.2:5081589-5081608 None:intergenic 55.0%
GTTAAGGTTCATCCTCGCCG+TGG - chr2.2:5081559-5081578 MS.gene78469:CDS 55.0%
TGGCACCACCGTTGAGGTTA+AGG - chr2.2:5081543-5081562 MS.gene78469:CDS 55.0%
! GGCATCTCAGTTGGTGCATC+TGG - chr2.2:5083139-5083158 MS.gene78469:intron 55.0%
!! CTCGTGTGGCCTGATAATGG+TGG + chr2.2:5082176-5082195 None:intergenic 55.0%
ACATGGTGGCACCACCGTTG+AGG - chr2.2:5081537-5081556 MS.gene78469:CDS 60.0%
ACGACGAAGACGGAGACCCA+CGG + chr2.2:5081579-5081598 None:intergenic 60.0%
AGTGGAGGGAGGAACCCACA+TGG - chr2.2:5081520-5081539 MS.gene78469:CDS 60.0%
! TCACGATCACGAGTGACGGG+AGG + chr2.2:5081610-5081629 None:intergenic 60.0%
!! CAACGGTGGTGCCACCATGT+GGG + chr2.2:5081537-5081556 None:intergenic 60.0%
!! TCAACGGTGGTGCCACCATG+TGG + chr2.2:5081538-5081557 None:intergenic 60.0%
GGAGGGAGGAACCCACATGG+TGG - chr2.2:5081523-5081542 MS.gene78469:CDS 65.0%
GAAGACGGAGACCCACGGCG+AGG + chr2.2:5081574-5081593 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 5081517 5083896 5081517 ID=MS.gene78469
chr2.2 mRNA 5081517 5083896 5081517 ID=MS.gene78469.t1;Parent=MS.gene78469
chr2.2 exon 5083586 5083896 5083586 ID=MS.gene78469.t1.exon1;Parent=MS.gene78469.t1
chr2.2 CDS 5083586 5083896 5083586 ID=cds.MS.gene78469.t1;Parent=MS.gene78469.t1
chr2.2 exon 5082552 5082715 5082552 ID=MS.gene78469.t1.exon2;Parent=MS.gene78469.t1
chr2.2 CDS 5082552 5082715 5082552 ID=cds.MS.gene78469.t1;Parent=MS.gene78469.t1
chr2.2 exon 5082182 5082345 5082182 ID=MS.gene78469.t1.exon3;Parent=MS.gene78469.t1
chr2.2 CDS 5082182 5082345 5082182 ID=cds.MS.gene78469.t1;Parent=MS.gene78469.t1
chr2.2 exon 5081799 5082061 5081799 ID=MS.gene78469.t1.exon4;Parent=MS.gene78469.t1
chr2.2 CDS 5081799 5082061 5081799 ID=cds.MS.gene78469.t1;Parent=MS.gene78469.t1
chr2.2 exon 5081517 5081643 5081517 ID=MS.gene78469.t1.exon5;Parent=MS.gene78469.t1
chr2.2 CDS 5081517 5081643 5081517 ID=cds.MS.gene78469.t1;Parent=MS.gene78469.t1
Gene Sequence

>MS.gene78469

ATGAGTGGAGGGAGGAACCCACATGGTGGCACCACCGTTGAGGTTAAGGTTCATCCTCGCCGTGGGTCTCCGTCTTCGTCGTCGTCGAATCCTCCCGTCACTCGTGATCGTGATTTCAGGCTCTTTAAGCAATGGGTTCCATGGCTTGTTCCAACTTTTGTGTTTGCCAACGTTATTATTTTCATTGTTACAATGTATGTTAATGATTGTCCTGAGAATGCATTTCATGGTACTTGTGTTGCTCCTTTTCTTGGAAGATTCTCCTTTCAACCACTTAAAGAAAACCCTCTCTTTGGTCCTTCTTCCTTTACGTGAGTTTTCTTTTTCTCTTTATCTTTTCATCTTATCATACAATACAATTACAATGTTTTATTTTTTTTTTATTTTATTTTAATTACAATTTTACATTAATCAAGTTATGATTGGTTGGTTCTTATGATGCATGTAGTTACATTCAATTATTCTATTTTCTCAAATTATTACATGTGTTGATGTTGTTAAGAGTCTTGCATTAGATGAGATGTAGCTTGAGAATGAGTTTATTAGTGTGGATAATCGTCATTTTGCAAGCCAGTTTTGTGAATGAGTTAGGCATAATTGAAATTTTAAGATGTATCAGAGTTTTTCCAAGATCCATTGAACCGCCTGCTATCTGGCCACCATTATCAGGCCACACGAGTCACACTTTAGATGTCTAAGATTGGGGGTAAGGGTGTGTTAAGAGTCTCACATTGAATGAGATAGACATGAACATGTGTTTATAAATGGGGGGTTGGGTAGTTAAATTGATTCGAGCTAAGGGATAAGAAGTTGGAGGTTCTAAGTTCAAACCCGGACGAAGGAGTAAATATTAATATAACAACTAATTGCTAACACTTGTCATTCAGAAACAAAAACGTGTGTTTGTAAGGATGCATAGGTTCAATATAAAAAACCTAATAGATGTGTGAGGGTTGTGTTTATCTTGTGTCTGTGTCTCTACCGGTGATTCATAGATTACATTCTCTATGGCTATGAAATTTCAGAAATGACTAAAATTTGAGAGTTTTCAACTCAAATTCAGTCCAAATTATGTATTTGCAATAGCTAATGGACAGTACCAATCTTAATTTTAGGCAGATATATCTCTTGGAGATGTTTTTTATGTGCTGACGAAAACTATTTATTACTCGCATTTTCAGATTACAGGAGATGGGTGCTCTAGAAGTAGATAAAGTGGTTCATGAACACGAAGGTTGGCGCCTTGTCTCTTGTATATGGTTGCATGGTGGGGCTATCCATGTACTTGCCAACATGTTGAGTCTTCTTTTTATTGGAATTCGGCTTGAACAAGAATTTGGATTTGGTATGGTTCTGGTAATTATCCTTGCATTGTTCAAGTATATCGTTATATTTCTTCCGACCAACAGTATTCCATTATCTGTATTTATATCATTGTTTTTACATAAATGTTCTGGAAGAAAAGAAACTCAGCTGAGTTTATTTAGCAATGAAATCAATAAAAAAGCTTTGTTGTCGATTGTAATTTCTACCTTTCTTGTCCTTTCGCAGTTAGAATTGGATTTCTCTATGTGATATCTGGTTTTGGAGGGAGTTTGCTGTCTGCGTTATTCATACAAACGGGCATCTCAGTTGGTGCATCTGGTGCATTGTTTGGCTTACTCGGAGGGATGCTCTCAGAGCTCTTCATTAATTGGACGATATATGCCAATAAGGTGAATGAACTAAAAAAATTGTTCAATTCAACAGTGCTTCCTGATAAATAATTTATTGTCTTTGCGGTCTGCGCCTAAACCATTCTATTTCTTTCCATTTTGTCTCATGATGTTTTGCAGATGGCTGCATTGTTGACTCTTATAGTCATTGTTGTAATAAATTTAGCTGTTGGAGTCCTTCCACATGTTGACAATTTCGCTCATCTAGGAGGATTTGGTTCTGGCTTTCTGCTTGGATTTGTCCTTTTGATTCGTCCTCAGTTTAAATGGATAAGCCAACAACAGTCTAAATCTGGATCTCATGCATTTTCTGTTAAACACAATAAGTACTTACCTTATCAATATGTGTTGTGGGTTTTGTCTTTCCTATTACTCATTGCAGGGTAAGTTTGTTTTAGTTTTCTTTTCTCTTTTGTATATTACCTTTAATATTCTTAGGACTTGGATACTCTTTTCACAAATATTTTGTTTGTAGAGATTGAATTTATGTTATTGCTTGTAAAGTAGTATTTAATCTAAAGTTGGATAATTTTGACAGATTCATTACTGGGATGGTTCTACTCTTTCGAGGTGTTAACTTGAATGAACGTTGCTCGTGGTGTCATTATTTAAGTTGTGTTCCTACCTCAAAATGGAGTTGTCAGGAACAAAGCATTTATTGTGAG
Protein sequence

>MS.gene78469.t1

MSGGRNPHGGTTVEVKVHPRRGSPSSSSSNPPVTRDRDFRLFKQWVPWLVPTFVFANVIIFIVTMYVNDCPENAFHGTCVAPFLGRFSFQPLKENPLFGPSSFTLQEMGALEVDKVVHEHEGWRLVSCIWLHGGAIHVLANMLSLLFIGIRLEQEFGFVRIGFLYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELFINWTIYANKMAALLTLIVIVVINLAVGVLPHVDNFAHLGGFGSGFLLGFVLLIRPQFKWISQQQSKSGSHAFSVKHNKYLPYQYVLWVLSFLLLIAGFITGMVLLFRGVNLNERCSWCHYLSCVPTSKWSCQEQSIYCE