Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78618.t1 | XP_003616242.1 | 94.3 | 387 | 20 | 1 | 1 | 385 | 1 | 387 | 1.40E-211 | 745.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78618.t1 | Q94II3 | 27.2 | 202 | 130 | 9 | 131 | 329 | 104 | 291 | 7.8e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78618.t1 | G7KG13 | 94.3 | 387 | 20 | 1 | 1 | 385 | 1 | 387 | 9.9e-212 | 745.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051385 | MS.gene78618 | 0.812249 | 4.66E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene78618 | 0.844832 | 5.92E-59 | -1.69E-46 |
| MS.gene056330 | MS.gene78618 | 0.81408 | 1.85E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene78618 | 0.841925 | 3.53E-58 | -1.69E-46 |
| MS.gene056920 | MS.gene78618 | 0.829551 | 4.83E-55 | -1.69E-46 |
| MS.gene060087 | MS.gene78618 | 0.810126 | 1.35E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78618.t1 | MTR_5g077710 | 96.641 | 387 | 11 | 1 | 1 | 385 | 1 | 387 | 0.0 | 766 |
| MS.gene78618.t1 | MTR_2g028610 | 50.964 | 363 | 176 | 2 | 20 | 382 | 98 | 458 | 9.94e-138 | 401 |
| MS.gene78618.t1 | MTR_2g028590 | 48.919 | 370 | 182 | 2 | 13 | 382 | 101 | 463 | 2.47e-133 | 390 |
| MS.gene78618.t1 | MTR_1g024005 | 42.508 | 327 | 174 | 7 | 62 | 383 | 108 | 425 | 7.16e-89 | 275 |
| MS.gene78618.t1 | MTR_8g028460 | 43.390 | 295 | 156 | 4 | 94 | 381 | 195 | 485 | 8.45e-87 | 271 |
| MS.gene78618.t1 | MTR_0010s0400 | 41.003 | 339 | 191 | 5 | 43 | 381 | 127 | 456 | 9.81e-85 | 265 |
| MS.gene78618.t1 | MTR_3g113270 | 40.798 | 326 | 181 | 8 | 62 | 383 | 103 | 420 | 3.24e-84 | 263 |
| MS.gene78618.t1 | MTR_4g094572 | 43.144 | 299 | 148 | 7 | 92 | 382 | 91 | 375 | 9.00e-71 | 226 |
| MS.gene78618.t1 | MTR_3g071050 | 40.609 | 197 | 109 | 6 | 62 | 256 | 75 | 265 | 5.42e-40 | 143 |
| MS.gene78618.t1 | MTR_3g070620 | 45.455 | 132 | 67 | 4 | 192 | 320 | 59 | 188 | 2.51e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78618.t1 | AT3G05390 | 42.598 | 331 | 181 | 5 | 51 | 381 | 138 | 459 | 1.10e-91 | 283 |
| MS.gene78618.t1 | AT4G01240 | 45.918 | 294 | 149 | 5 | 94 | 381 | 365 | 654 | 5.16e-89 | 282 |
| MS.gene78618.t1 | AT5G40830 | 42.683 | 328 | 169 | 9 | 61 | 383 | 100 | 413 | 6.56e-84 | 261 |
| MS.gene78618.t1 | AT5G40830 | 42.683 | 328 | 169 | 9 | 61 | 383 | 100 | 413 | 6.56e-84 | 261 |
| MS.gene78618.t1 | AT3G27230 | 42.236 | 322 | 173 | 6 | 62 | 383 | 101 | 409 | 1.50e-81 | 255 |
| MS.gene78618.t1 | AT1G29790 | 41.096 | 292 | 150 | 7 | 92 | 381 | 104 | 375 | 4.68e-73 | 233 |
| MS.gene78618.t1 | AT1G29790 | 41.096 | 292 | 150 | 7 | 92 | 381 | 104 | 375 | 4.68e-73 | 233 |
| MS.gene78618.t1 | AT5G40830 | 37.615 | 327 | 149 | 5 | 60 | 383 | 99 | 373 | 2.71e-72 | 230 |
Find 126 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATGGGTGGCGGGAAATT+TGG | 0.175726 | 5.2:-66064546 | None:intergenic |
| GATCAATTAGAGAATGTTTA+TGG | 0.238851 | 5.2:+66065122 | MS.gene78618:CDS |
| TTATGAGGTTTGTGAATAAA+AGG | 0.274720 | 5.2:-66064176 | None:intergenic |
| TTTGTTGTTTGATGTTTATA+GGG | 0.284105 | 5.2:+66065049 | MS.gene78618:CDS |
| TTAGACCTGGTGGGTTGTTT+TGG | 0.290537 | 5.2:+66065075 | MS.gene78618:CDS |
| TGATAAGGGACCTCAATTTC+AGG | 0.291988 | 5.2:+66065202 | MS.gene78618:CDS |
| AATGTACCTTTCTGCTTTGT+TGG | 0.311264 | 5.2:+66065226 | MS.gene78618:CDS |
| AAATCTAGACCGTTTGATCT+AGG | 0.311564 | 5.2:-66064738 | None:intergenic |
| GAAGCTATGAAGCTATTAAA+AGG | 0.313502 | 5.2:-66064903 | None:intergenic |
| GTGGTGGTGGTTGTAAAATT+TGG | 0.315722 | 5.2:-66064240 | None:intergenic |
| GAAGGGAAGGGGATGGGTGG+CGG | 0.332502 | 5.2:-66064555 | None:intergenic |
| TCTCAAAGACTCCTACTAAA+AGG | 0.337748 | 5.2:+66064480 | MS.gene78618:CDS |
| TCCCCTTCCCTTCCAGTCTC+TGG | 0.349654 | 5.2:+66064565 | MS.gene78618:CDS |
| TGAAGAGTAAATTGGCGGTT+AGG | 0.360306 | 5.2:-66064146 | None:intergenic |
| AAGAAAGTTAAGTGGGTTGC+TGG | 0.363797 | 5.2:+66065170 | MS.gene78618:CDS |
| TGCGAAATACTCATGTATAA+AGG | 0.374905 | 5.2:-66064939 | None:intergenic |
| GCGGTGGAGGCAAAGAATTC+CGG | 0.386587 | 5.2:-66064306 | None:intergenic |
| CGGCAACGGCGGCGAGGGAG+AGG | 0.391663 | 5.2:-66064510 | None:intergenic |
| GAGGGAAATGAAGAGTAAAT+TGG | 0.398464 | 5.2:-66064154 | None:intergenic |
| GTCTTCAACGGCGGTGGCTG+TGG | 0.403735 | 5.2:-66064259 | None:intergenic |
| CGGTGTCGGAGTTGAAGTTT+CGG | 0.405953 | 5.2:-66064356 | None:intergenic |
| GGGAAATTTGGTGGCGCCGC+TGG | 0.415117 | 5.2:-66064534 | None:intergenic |
| GAAGAGTAAATTGGCGGTTA+GGG | 0.415281 | 5.2:-66064145 | None:intergenic |
| ATGGGTGGCGGGAAATTTGG+TGG | 0.420552 | 5.2:-66064543 | None:intergenic |
| TAAACCGATTCGAACCGAAC+CGG | 0.422920 | 5.2:-66064793 | None:intergenic |
| GTGCATGCGCTGCCGGAGGG+AGG | 0.425313 | 5.2:-66064384 | None:intergenic |
| AACGGCGGTGGCTGTGGTGG+TGG | 0.430884 | 5.2:-66064253 | None:intergenic |
| CTGGAAGGGAAGGGGATGGG+TGG | 0.432986 | 5.2:-66064558 | None:intergenic |
| ATTCACCATGAATCCTTGAA+TGG | 0.436986 | 5.2:-66065254 | None:intergenic |
| AAGGGAAGGGGATGGGTGGC+GGG | 0.437758 | 5.2:-66064554 | None:intergenic |
| AACCCTACACTTTCAATCAT+AGG | 0.442677 | 5.2:-66065146 | None:intergenic |
| AGCCTCTCTGTGTGCGGGAA+CGG | 0.450861 | 5.2:-66064656 | None:intergenic |
| GATCCCCAACACAAAAGAAA+TGG | 0.457855 | 5.2:-66065103 | None:intergenic |
| AAAGAGGGTGCATGCGCTGC+CGG | 0.459531 | 5.2:-66064391 | None:intergenic |
| ACAACGTCGTTAAACTTAAA+CGG | 0.460143 | 5.2:+66064879 | MS.gene78618:CDS |
| AGAAGCCATTCAAGGATTCA+TGG | 0.463717 | 5.2:+66065249 | MS.gene78618:CDS |
| TGAGAGAGAATCTCGTCATC+TGG | 0.465198 | 5.2:-66064462 | None:intergenic |
| TGCTGGGAAGAAGCTTGATA+AGG | 0.468376 | 5.2:+66065187 | MS.gene78618:CDS |
| AATCTAGACCGTTTGATCTA+GGG | 0.468716 | 5.2:-66064737 | None:intergenic |
| GTGGCGCCGCTGGACGGCAA+CGG | 0.469598 | 5.2:-66064524 | None:intergenic |
| AGCGCTGTCTTCAACGGCGG+TGG | 0.470998 | 5.2:-66064265 | None:intergenic |
| GACCTATGATTGAAAGTGTA+GGG | 0.472579 | 5.2:+66065144 | MS.gene78618:CDS |
| CTGGACGGCAACGGCGGCGA+GGG | 0.472795 | 5.2:-66064515 | None:intergenic |
| GGAGGGAGGGTGGACGGTGT+CGG | 0.473602 | 5.2:-66064370 | None:intergenic |
| GTTCGAATCGGTTTAGACAT+AGG | 0.474512 | 5.2:+66064801 | MS.gene78618:CDS |
| AGGTACATTTCCTGAAATTG+AGG | 0.476525 | 5.2:-66065212 | None:intergenic |
| CCACACGACGGAGGAATTTG+AGG | 0.479902 | 5.2:-66064595 | None:intergenic |
| TTTGTTGGAGAAGCCATTCA+AGG | 0.482535 | 5.2:+66065241 | MS.gene78618:CDS |
| TAGGGTTTAAGAAAGTTAAG+TGG | 0.485340 | 5.2:+66065162 | MS.gene78618:CDS |
| AAACCCGGTTCGGTTCGAAT+CGG | 0.488469 | 5.2:+66064789 | MS.gene78618:CDS |
| TTGATCTAGGGTTTGTCCAA+CGG | 0.488488 | 5.2:-66064725 | None:intergenic |
| TGCATGCGCTGCCGGAGGGA+GGG | 0.489995 | 5.2:-66064383 | None:intergenic |
| GCTGGGAAGAAGCTTGATAA+GGG | 0.490456 | 5.2:+66065188 | MS.gene78618:CDS |
| GCTGGACGGCAACGGCGGCG+AGG | 0.492162 | 5.2:-66064516 | None:intergenic |
| AAACCGATTCGAACCGAACC+GGG | 0.494960 | 5.2:-66064792 | None:intergenic |
| TTGGTGTACAAGTGGAGGAA+TGG | 0.497681 | 5.2:-66064221 | None:intergenic |
| TGCGGATATCGTCGGGAAAG+AGG | 0.501843 | 5.2:-66064407 | None:intergenic |
| AGAAACACGTAAACCCGGTT+CGG | 0.502080 | 5.2:+66064779 | MS.gene78618:CDS |
| ATGAAGCTGCGGATATCGTC+GGG | 0.512073 | 5.2:-66064414 | None:intergenic |
| TCGCCGCCGTTGCCGTCCAG+CGG | 0.514695 | 5.2:+66064518 | MS.gene78618:CDS |
| ATCGAAGCCTCTCTGTGTGC+GGG | 0.515555 | 5.2:-66064661 | None:intergenic |
| TTCAACGGCGGTGGCTGTGG+TGG | 0.515739 | 5.2:-66064256 | None:intergenic |
| TATAGGGTTCTTAGACCTGG+TGG | 0.518659 | 5.2:+66065065 | MS.gene78618:CDS |
| AGACTGGAAGGGAAGGGGAT+GGG | 0.522575 | 5.2:-66064561 | None:intergenic |
| GTTTATAGGGTTCTTAGACC+TGG | 0.523866 | 5.2:+66065062 | MS.gene78618:CDS |
| ATAGGGTTCTTAGACCTGGT+GGG | 0.524499 | 5.2:+66065066 | MS.gene78618:CDS |
| AGAAAGTTAAGTGGGTTGCT+GGG | 0.526199 | 5.2:+66065171 | MS.gene78618:CDS |
| GACCAGAGACTGGAAGGGAA+GGG | 0.527483 | 5.2:-66064567 | None:intergenic |
| AGGAAAGAAAGAGTGTTATG+AGG | 0.530138 | 5.2:-66064191 | None:intergenic |
| AGGGTTTAAGAAAGTTAAGT+GGG | 0.531766 | 5.2:+66065163 | MS.gene78618:CDS |
| ACAAGTGGAGGAATGGTAAG+TGG | 0.533615 | 5.2:-66064214 | None:intergenic |
| GCCAGCGCTGTCTTCAACGG+CGG | 0.535578 | 5.2:-66064268 | None:intergenic |
| ACCAGAGACTGGAAGGGAAG+GGG | 0.537057 | 5.2:-66064566 | None:intergenic |
| GCGCCGCTGGACGGCAACGG+CGG | 0.544544 | 5.2:-66064521 | None:intergenic |
| GGTGTAGACCAGAGACTGGA+AGG | 0.545576 | 5.2:-66064573 | None:intergenic |
| TGGTGGAGTAGCAACTTTCG+CGG | 0.547029 | 5.2:+66064824 | MS.gene78618:CDS |
| TGTAAAATTTGGTGTACAAG+TGG | 0.547597 | 5.2:-66064229 | None:intergenic |
| GAGACTGGAAGGGAAGGGGA+TGG | 0.551184 | 5.2:-66064562 | None:intergenic |
| TGGACAAACCCTAGATCAAA+CGG | 0.551753 | 5.2:+66064729 | MS.gene78618:CDS |
| AGGGTGCATGCGCTGCCGGA+GGG | 0.553432 | 5.2:-66064387 | None:intergenic |
| GCTGCCGGAGGGAGGGTGGA+CGG | 0.553588 | 5.2:-66064376 | None:intergenic |
| GAGGTTTGTGAATAAAAGGA+GGG | 0.554209 | 5.2:-66064172 | None:intergenic |
| AATTTGGTGGCGCCGCTGGA+CGG | 0.554790 | 5.2:-66064530 | None:intergenic |
| CATGAAGCTGCGGATATCGT+CGG | 0.555173 | 5.2:-66064415 | None:intergenic |
| CCAATTACTCAAAACATGCA+TGG | 0.556759 | 5.2:-66065003 | None:intergenic |
| GCGGATATCGTCGGGAAAGA+GGG | 0.558600 | 5.2:-66064406 | None:intergenic |
| GTCGCCAGCGCTGTCTTCAA+CGG | 0.559058 | 5.2:-66064271 | None:intergenic |
| GAGGGTGCATGCGCTGCCGG+AGG | 0.563602 | 5.2:-66064388 | None:intergenic |
| TGAGGTTTGTGAATAAAAGG+AGG | 0.564210 | 5.2:-66064173 | None:intergenic |
| ATCGGTTTAGACATAGGTGG+TGG | 0.566020 | 5.2:+66064807 | MS.gene78618:CDS |
| CATCGAAGCCTCTCTGTGTG+CGG | 0.567625 | 5.2:-66064662 | None:intergenic |
| AAAATTTGGTGTACAAGTGG+AGG | 0.570105 | 5.2:-66064226 | None:intergenic |
| GGACCTATGATTGAAAGTGT+AGG | 0.571785 | 5.2:+66065143 | MS.gene78618:CDS |
| TTGTCCAACGGTGCTTCTCG+CGG | 0.575905 | 5.2:-66064713 | None:intergenic |
| ACGGCCGCGAGAAGCACCGT+TGG | 0.579438 | 5.2:+66064709 | MS.gene78618:CDS |
| TGAGGGTGTAGACCAGAGAC+TGG | 0.583150 | 5.2:-66064577 | None:intergenic |
| AAGTTTCGGTTGAAACCTAG+TGG | 0.586759 | 5.2:-66064342 | None:intergenic |
| GTGGAGGCAAAGAATTCCGG+TGG | 0.587843 | 5.2:-66064303 | None:intergenic |
| GACACCGTCCACCCTCCCTC+CGG | 0.591729 | 5.2:+66064372 | MS.gene78618:CDS |
| AGACCAGAGACTGGAAGGGA+AGG | 0.594271 | 5.2:-66064568 | None:intergenic |
| ACCGCCGTTGAAGACAGCGC+TGG | 0.594417 | 5.2:+66064267 | MS.gene78618:CDS |
| ACATGATCCGTTCACGTCGT+AGG | 0.599038 | 5.2:-66064439 | None:intergenic |
| CACACGACGGAGGAATTTGA+GGG | 0.599747 | 5.2:-66064594 | None:intergenic |
| ATAGCTTCATAGCTTCAAGA+GGG | 0.600391 | 5.2:+66064910 | MS.gene78618:CDS |
| ATGCGCTGCCGGAGGGAGGG+TGG | 0.601895 | 5.2:-66064380 | None:intergenic |
| AATAGCTTCATAGCTTCAAG+AGG | 0.604135 | 5.2:+66064909 | MS.gene78618:CDS |
| TTCATGTCCTACGACGTGAA+CGG | 0.613712 | 5.2:+66064432 | MS.gene78618:CDS |
| CCTCAAATTCCTCCGTCGTG+TGG | 0.615734 | 5.2:+66064595 | MS.gene78618:CDS |
| TATACATGAGTATTTCGCAA+CGG | 0.616135 | 5.2:+66064943 | MS.gene78618:CDS |
| GCTTCTCCAACAAAGCAGAA+AGG | 0.617751 | 5.2:-66065232 | None:intergenic |
| GTGTAGACCAGAGACTGGAA+GGG | 0.619328 | 5.2:-66064572 | None:intergenic |
| GGAAATGAAGAGTAAATTGG+CGG | 0.625883 | 5.2:-66064151 | None:intergenic |
| TCCAACCAAAACAACCCACC+AGG | 0.633677 | 5.2:-66065080 | None:intergenic |
| GTAGGATTTGCATGTGTAAG+CGG | 0.635626 | 5.2:-66064619 | None:intergenic |
| AGTTTCGGTTGAAACCTAGT+GGG | 0.640219 | 5.2:-66064341 | None:intergenic |
| AGTGGAGGAATGGTAAGTGG+AGG | 0.642457 | 5.2:-66064211 | None:intergenic |
| CGAATCGGTTTAGACATAGG+TGG | 0.657680 | 5.2:+66064804 | MS.gene78618:CDS |
| TGGCGACAGTAACCTCCCAC+CGG | 0.659388 | 5.2:+66064287 | MS.gene78618:CDS |
| TAGCTTCATAGCTTCAAGAG+GGG | 0.664954 | 5.2:+66064911 | MS.gene78618:CDS |
| ACGGTCAATGAGACACGTGT+AGG | 0.665828 | 5.2:-66064637 | None:intergenic |
| GACCGTTCCCGCACACAGAG+AGG | 0.674609 | 5.2:+66064654 | MS.gene78618:CDS |
| AGGCAAAGAATTCCGGTGGG+AGG | 0.675859 | 5.2:-66064299 | None:intergenic |
| CGTCGTAGGACATGAAGCTG+CGG | 0.691105 | 5.2:-66064425 | None:intergenic |
| TGTGTAAGCGGTCCACACGA+CGG | 0.695478 | 5.2:-66064607 | None:intergenic |
| TGGAGGCAAAGAATTCCGGT+GGG | 0.703773 | 5.2:-66064302 | None:intergenic |
| GTAAGCGGTCCACACGACGG+AGG | 0.732499 | 5.2:-66064604 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTGTTTGATGTTTATA+GGG | + | chr5.2:66065049-66065068 | MS.gene78618:CDS | 20.0% |
| !!! | TTTTGTTGTTTGATGTTTAT+AGG | + | chr5.2:66065048-66065067 | MS.gene78618:CDS | 20.0% |
| ! | AAAAAATGAAGCAATGTTTC+GGG | - | chr5.2:66065032-66065051 | None:intergenic | 25.0% |
| ! | CAAAAAATGAAGCAATGTTT+CGG | - | chr5.2:66065033-66065052 | None:intergenic | 25.0% |
| ! | GATCAATTAGAGAATGTTTA+TGG | + | chr5.2:66065122-66065141 | MS.gene78618:CDS | 25.0% |
| ! | TTATGAGGTTTGTGAATAAA+AGG | - | chr5.2:66064179-66064198 | None:intergenic | 25.0% |
| !! | TCCAAAGTGTTATCAAAAAA+CGG | - | chr5.2:66064972-66064991 | None:intergenic | 25.0% |
| ACAACGTCGTTAAACTTAAA+CGG | + | chr5.2:66064879-66064898 | MS.gene78618:CDS | 30.0% | |
| AGGGTTTAAGAAAGTTAAGT+GGG | + | chr5.2:66065163-66065182 | MS.gene78618:CDS | 30.0% | |
| GAAGCTATGAAGCTATTAAA+AGG | - | chr5.2:66064906-66064925 | None:intergenic | 30.0% | |
| TAGGGTTTAAGAAAGTTAAG+TGG | + | chr5.2:66065162-66065181 | MS.gene78618:CDS | 30.0% | |
| TATACATGAGTATTTCGCAA+CGG | + | chr5.2:66064943-66064962 | MS.gene78618:CDS | 30.0% | |
| TGCGAAATACTCATGTATAA+AGG | - | chr5.2:66064942-66064961 | None:intergenic | 30.0% | |
| !! | TGTAAAATTTGGTGTACAAG+TGG | - | chr5.2:66064232-66064251 | None:intergenic | 30.0% |
| !!! | AAAGACTGTTTTGATCTCAA+CGG | + | chr5.2:66064690-66064709 | MS.gene78618:CDS | 30.0% |
| !!! | TCCGTTTTTTGATAACACTT+TGG | + | chr5.2:66064968-66064987 | MS.gene78618:CDS | 30.0% |
| AAATCTAGACCGTTTGATCT+AGG | - | chr5.2:66064741-66064760 | None:intergenic | 35.0% | |
| AACCCTACACTTTCAATCAT+AGG | - | chr5.2:66065149-66065168 | None:intergenic | 35.0% | |
| AATAGCTTCATAGCTTCAAG+AGG | + | chr5.2:66064909-66064928 | MS.gene78618:CDS | 35.0% | |
| AATCTAGACCGTTTGATCTA+GGG | - | chr5.2:66064740-66064759 | None:intergenic | 35.0% | |
| AATGTACCTTTCTGCTTTGT+TGG | + | chr5.2:66065226-66065245 | MS.gene78618:CDS | 35.0% | |
| AGGTACATTTCCTGAAATTG+AGG | - | chr5.2:66065215-66065234 | None:intergenic | 35.0% | |
| ATAGCTTCATAGCTTCAAGA+GGG | + | chr5.2:66064910-66064929 | MS.gene78618:CDS | 35.0% | |
| CCAATTACTCAAAACATGCA+TGG | - | chr5.2:66065006-66065025 | None:intergenic | 35.0% | |
| GAGGGAAATGAAGAGTAAAT+TGG | - | chr5.2:66064157-66064176 | None:intergenic | 35.0% | |
| GAGGTTTGTGAATAAAAGGA+GGG | - | chr5.2:66064175-66064194 | None:intergenic | 35.0% | |
| GGAAATGAAGAGTAAATTGG+CGG | - | chr5.2:66064154-66064173 | None:intergenic | 35.0% | |
| TCTCAAAGACTCCTACTAAA+AGG | + | chr5.2:66064480-66064499 | MS.gene78618:CDS | 35.0% | |
| TGAGGTTTGTGAATAAAAGG+AGG | - | chr5.2:66064176-66064195 | None:intergenic | 35.0% | |
| ! | GACCTATGATTGAAAGTGTA+GGG | + | chr5.2:66065144-66065163 | MS.gene78618:CDS | 35.0% |
| ! | TGGACCATTTCTTTTGTGTT+GGG | + | chr5.2:66065099-66065118 | MS.gene78618:CDS | 35.0% |
| ! | TTGGACCATTTCTTTTGTGT+TGG | + | chr5.2:66065098-66065117 | MS.gene78618:CDS | 35.0% |
| !! | AAAATTTGGTGTACAAGTGG+AGG | - | chr5.2:66064229-66064248 | None:intergenic | 35.0% |
| !! | AGGAAAGAAAGAGTGTTATG+AGG | - | chr5.2:66064194-66064213 | None:intergenic | 35.0% |
| !! | CCATGCATGTTTTGAGTAAT+TGG | + | chr5.2:66065003-66065022 | MS.gene78618:CDS | 35.0% |
| !!! | GTTTTAGAAACACGTAAACC+CGG | + | chr5.2:66064774-66064793 | MS.gene78618:CDS | 35.0% |
| AAGTTTCGGTTGAAACCTAG+TGG | - | chr5.2:66064345-66064364 | None:intergenic | 40.0% | |
| AGTTTCGGTTGAAACCTAGT+GGG | - | chr5.2:66064344-66064363 | None:intergenic | 40.0% | |
| GAAGAGTAAATTGGCGGTTA+GGG | - | chr5.2:66064148-66064167 | None:intergenic | 40.0% | |
| GATCCCCAACACAAAAGAAA+TGG | - | chr5.2:66065106-66065125 | None:intergenic | 40.0% | |
| GTAGGATTTGCATGTGTAAG+CGG | - | chr5.2:66064622-66064641 | None:intergenic | 40.0% | |
| GTTTATAGGGTTCTTAGACC+TGG | + | chr5.2:66065062-66065081 | MS.gene78618:CDS | 40.0% | |
| TAGCTTCATAGCTTCAAGAG+GGG | + | chr5.2:66064911-66064930 | MS.gene78618:CDS | 40.0% | |
| TGAAGAGTAAATTGGCGGTT+AGG | - | chr5.2:66064149-66064168 | None:intergenic | 40.0% | |
| TGATAAGGGACCTCAATTTC+AGG | + | chr5.2:66065202-66065221 | MS.gene78618:CDS | 40.0% | |
| TGGACAAACCCTAGATCAAA+CGG | + | chr5.2:66064729-66064748 | MS.gene78618:CDS | 40.0% | |
| TTTGTTGGAGAAGCCATTCA+AGG | + | chr5.2:66065241-66065260 | MS.gene78618:CDS | 40.0% | |
| ! | AAACCTAGTGGGAGTTTTTG+TGG | - | chr5.2:66064333-66064352 | None:intergenic | 40.0% |
| ! | AAATTGGCGGTTAGGGTTTT+TGG | - | chr5.2:66064141-66064160 | None:intergenic | 40.0% |
| ! | GGACCATTTCTTTTGTGTTG+GGG | + | chr5.2:66065100-66065119 | MS.gene78618:CDS | 40.0% |
| ! | GGACCTATGATTGAAAGTGT+AGG | + | chr5.2:66065143-66065162 | MS.gene78618:CDS | 40.0% |
| ! | GTTCGAATCGGTTTAGACAT+AGG | + | chr5.2:66064801-66064820 | MS.gene78618:CDS | 40.0% |
| ! | TTGATCTAGGGTTTGTCCAA+CGG | - | chr5.2:66064728-66064747 | None:intergenic | 40.0% |
| !! | AAGAAAGTTAAGTGGGTTGC+TGG | + | chr5.2:66065170-66065189 | MS.gene78618:CDS | 40.0% |
| !! | AGAAAGTTAAGTGGGTTGCT+GGG | + | chr5.2:66065171-66065190 | MS.gene78618:CDS | 40.0% |
| !! | CGGTTAGGGTTTTTGGATTA+GGG | - | chr5.2:66064134-66064153 | None:intergenic | 40.0% |
| !! | GTGGTGGTGGTTGTAAAATT+TGG | - | chr5.2:66064243-66064262 | None:intergenic | 40.0% |
| ACAAGTGGAGGAATGGTAAG+TGG | - | chr5.2:66064217-66064236 | None:intergenic | 45.0% | |
| AGAAACACGTAAACCCGGTT+CGG | + | chr5.2:66064779-66064798 | MS.gene78618:CDS | 45.0% | |
| ATAGGGTTCTTAGACCTGGT+GGG | + | chr5.2:66065066-66065085 | MS.gene78618:CDS | 45.0% | |
| GCTGGGAAGAAGCTTGATAA+GGG | + | chr5.2:66065188-66065207 | MS.gene78618:CDS | 45.0% | |
| GCTTCTCCAACAAAGCAGAA+AGG | - | chr5.2:66065235-66065254 | None:intergenic | 45.0% | |
| TATAGGGTTCTTAGACCTGG+TGG | + | chr5.2:66065065-66065084 | MS.gene78618:CDS | 45.0% | |
| TGAGAGAGAATCTCGTCATC+TGG | - | chr5.2:66064465-66064484 | None:intergenic | 45.0% | |
| TGCTGGGAAGAAGCTTGATA+AGG | + | chr5.2:66065187-66065206 | MS.gene78618:CDS | 45.0% | |
| TTCATGTCCTACGACGTGAA+CGG | + | chr5.2:66064432-66064451 | MS.gene78618:CDS | 45.0% | |
| TTGGTGTACAAGTGGAGGAA+TGG | - | chr5.2:66064224-66064243 | None:intergenic | 45.0% | |
| ! | ATCGGTTTAGACATAGGTGG+TGG | + | chr5.2:66064807-66064826 | MS.gene78618:CDS | 45.0% |
| ! | CGAATCGGTTTAGACATAGG+TGG | + | chr5.2:66064804-66064823 | MS.gene78618:CDS | 45.0% |
| ! | TAGTGGGAGTTTTTGTGGTG+CGG | - | chr5.2:66064328-66064347 | None:intergenic | 45.0% |
| !! | GCGGTTAGGGTTTTTGGATT+AGG | - | chr5.2:66064135-66064154 | None:intergenic | 45.0% |
| !! | TAAACCGATTCGAACCGAAC+CGG | - | chr5.2:66064796-66064815 | None:intergenic | 45.0% |
| !!! | TTAGACCTGGTGGGTTGTTT+TGG | + | chr5.2:66065075-66065094 | MS.gene78618:CDS | 45.0% |
| ACATGATCCGTTCACGTCGT+AGG | - | chr5.2:66064442-66064461 | None:intergenic | 50.0% | |
| ACGGTCAATGAGACACGTGT+AGG | - | chr5.2:66064640-66064659 | None:intergenic | 50.0% | |
| AGTGGAGGAATGGTAAGTGG+AGG | - | chr5.2:66064214-66064233 | None:intergenic | 50.0% | |
| ATGAAGCTGCGGATATCGTC+GGG | - | chr5.2:66064417-66064436 | None:intergenic | 50.0% | |
| CACACGACGGAGGAATTTGA+GGG | - | chr5.2:66064597-66064616 | None:intergenic | 50.0% | |
| CATGAAGCTGCGGATATCGT+CGG | - | chr5.2:66064418-66064437 | None:intergenic | 50.0% | |
| GCACCACAAAAACTCCCACT+AGG | + | chr5.2:66064327-66064346 | MS.gene78618:CDS | 50.0% | |
| GTGTAGACCAGAGACTGGAA+GGG | - | chr5.2:66064575-66064594 | None:intergenic | 50.0% | |
| TCCAACCAAAACAACCCACC+AGG | - | chr5.2:66065083-66065102 | None:intergenic | 50.0% | |
| TGGAGGCAAAGAATTCCGGT+GGG | - | chr5.2:66064305-66064324 | None:intergenic | 50.0% | |
| TGGTGGAGTAGCAACTTTCG+CGG | + | chr5.2:66064824-66064843 | MS.gene78618:CDS | 50.0% | |
| ! | CGGTGTCGGAGTTGAAGTTT+CGG | - | chr5.2:66064359-66064378 | None:intergenic | 50.0% |
| !! | AAACCCGGTTCGGTTCGAAT+CGG | + | chr5.2:66064789-66064808 | MS.gene78618:CDS | 50.0% |
| !! | AAACCGATTCGAACCGAACC+GGG | - | chr5.2:66064795-66064814 | None:intergenic | 50.0% |
| !!! | ACCTGGTGGGTTGTTTTGGT+TGG | + | chr5.2:66065079-66065098 | MS.gene78618:CDS | 50.0% |
| ACCAGAGACTGGAAGGGAAG+GGG | - | chr5.2:66064569-66064588 | None:intergenic | 55.0% | |
| AGACCAGAGACTGGAAGGGA+AGG | - | chr5.2:66064571-66064590 | None:intergenic | 55.0% | |
| AGACTGGAAGGGAAGGGGAT+GGG | - | chr5.2:66064564-66064583 | None:intergenic | 55.0% | |
| AGGCAAAGAATTCCGGTGGG+AGG | - | chr5.2:66064302-66064321 | None:intergenic | 55.0% | |
| ATCGAAGCCTCTCTGTGTGC+GGG | - | chr5.2:66064664-66064683 | None:intergenic | 55.0% | |
| CATCGAAGCCTCTCTGTGTG+CGG | - | chr5.2:66064665-66064684 | None:intergenic | 55.0% | |
| CCACACGACGGAGGAATTTG+AGG | - | chr5.2:66064598-66064617 | None:intergenic | 55.0% | |
| CCTCAAATTCCTCCGTCGTG+TGG | + | chr5.2:66064595-66064614 | MS.gene78618:CDS | 55.0% | |
| CGTCGTAGGACATGAAGCTG+CGG | - | chr5.2:66064428-66064447 | None:intergenic | 55.0% | |
| GACCAGAGACTGGAAGGGAA+GGG | - | chr5.2:66064570-66064589 | None:intergenic | 55.0% | |
| GCGGATATCGTCGGGAAAGA+GGG | - | chr5.2:66064409-66064428 | None:intergenic | 55.0% | |
| GCGGTGGAGGCAAAGAATTC+CGG | - | chr5.2:66064309-66064328 | None:intergenic | 55.0% | |
| GGTGTAGACCAGAGACTGGA+AGG | - | chr5.2:66064576-66064595 | None:intergenic | 55.0% | |
| GTGGAGGCAAAGAATTCCGG+TGG | - | chr5.2:66064306-66064325 | None:intergenic | 55.0% | |
| TGCGGATATCGTCGGGAAAG+AGG | - | chr5.2:66064410-66064429 | None:intergenic | 55.0% | |
| TGTGTAAGCGGTCCACACGA+CGG | - | chr5.2:66064610-66064629 | None:intergenic | 55.0% | |
| TTGTCCAACGGTGCTTCTCG+CGG | - | chr5.2:66064716-66064735 | None:intergenic | 55.0% | |
| ! | GAGGCTCGCAGCCTTTTAGT+AGG | - | chr5.2:66064494-66064513 | None:intergenic | 55.0% |
| ! | GAGTTTTTGTGGTGCGGTGG+AGG | - | chr5.2:66064322-66064341 | None:intergenic | 55.0% |
| ! | TGAGGGTGTAGACCAGAGAC+TGG | - | chr5.2:66064580-66064599 | None:intergenic | 55.0% |
| ! | TGGGAGTTTTTGTGGTGCGG+TGG | - | chr5.2:66064325-66064344 | None:intergenic | 55.0% |
| !! | ATGGGTGGCGGGAAATTTGG+TGG | - | chr5.2:66064546-66064565 | None:intergenic | 55.0% |
| AGCCTCTCTGTGTGCGGGAA+CGG | - | chr5.2:66064659-66064678 | None:intergenic | 60.0% | |
| GAGACTGGAAGGGAAGGGGA+TGG | - | chr5.2:66064565-66064584 | None:intergenic | 60.0% | |
| GTCGCCAGCGCTGTCTTCAA+CGG | - | chr5.2:66064274-66064293 | None:intergenic | 60.0% | |
| TCCCCTTCCCTTCCAGTCTC+TGG | + | chr5.2:66064565-66064584 | MS.gene78618:CDS | 60.0% | |
| TGGCGACAGTAACCTCCCAC+CGG | + | chr5.2:66064287-66064306 | MS.gene78618:CDS | 60.0% | |
| ! | AAAGAGGGTGCATGCGCTGC+CGG | - | chr5.2:66064394-66064413 | None:intergenic | 60.0% |
| !! | AATTTGGTGGCGCCGCTGGA+CGG | - | chr5.2:66064533-66064552 | None:intergenic | 60.0% |
| !! | GGGATGGGTGGCGGGAAATT+TGG | - | chr5.2:66064549-66064568 | None:intergenic | 60.0% |
| AAGGGAAGGGGATGGGTGGC+GGG | - | chr5.2:66064557-66064576 | None:intergenic | 65.0% | |
| ACCGCCGTTGAAGACAGCGC+TGG | + | chr5.2:66064267-66064286 | MS.gene78618:CDS | 65.0% | |
| AGCGCTGTCTTCAACGGCGG+TGG | - | chr5.2:66064268-66064287 | None:intergenic | 65.0% | |
| CTGGAAGGGAAGGGGATGGG+TGG | - | chr5.2:66064561-66064580 | None:intergenic | 65.0% | |
| GAAGGGAAGGGGATGGGTGG+CGG | - | chr5.2:66064558-66064577 | None:intergenic | 65.0% | |
| GACCGTTCCCGCACACAGAG+AGG | + | chr5.2:66064654-66064673 | MS.gene78618:CDS | 65.0% | |
| GCCAGCGCTGTCTTCAACGG+CGG | - | chr5.2:66064271-66064290 | None:intergenic | 65.0% | |
| GTAAGCGGTCCACACGACGG+AGG | - | chr5.2:66064607-66064626 | None:intergenic | 65.0% | |
| GTCTTCAACGGCGGTGGCTG+TGG | - | chr5.2:66064262-66064281 | None:intergenic | 65.0% | |
| TTCAACGGCGGTGGCTGTGG+TGG | - | chr5.2:66064259-66064278 | None:intergenic | 65.0% | |
| !! | GGGAAATTTGGTGGCGCCGC+TGG | - | chr5.2:66064537-66064556 | None:intergenic | 65.0% |
| AACGGCGGTGGCTGTGGTGG+TGG | - | chr5.2:66064256-66064275 | None:intergenic | 70.0% | |
| AGGGTGCATGCGCTGCCGGA+GGG | - | chr5.2:66064390-66064409 | None:intergenic | 70.0% | |
| GACACCGTCCACCCTCCCTC+CGG | + | chr5.2:66064372-66064391 | MS.gene78618:CDS | 70.0% | |
| GGAGGGAGGGTGGACGGTGT+CGG | - | chr5.2:66064373-66064392 | None:intergenic | 70.0% | |
| TGCATGCGCTGCCGGAGGGA+GGG | - | chr5.2:66064386-66064405 | None:intergenic | 70.0% | |
| !! | ACGGCCGCGAGAAGCACCGT+TGG | + | chr5.2:66064709-66064728 | MS.gene78618:CDS | 70.0% |
| ATGCGCTGCCGGAGGGAGGG+TGG | - | chr5.2:66064383-66064402 | None:intergenic | 75.0% | |
| CTGGACGGCAACGGCGGCGA+GGG | - | chr5.2:66064518-66064537 | None:intergenic | 75.0% | |
| GCTGCCGGAGGGAGGGTGGA+CGG | - | chr5.2:66064379-66064398 | None:intergenic | 75.0% | |
| GTGCATGCGCTGCCGGAGGG+AGG | - | chr5.2:66064387-66064406 | None:intergenic | 75.0% | |
| GTGGCGCCGCTGGACGGCAA+CGG | - | chr5.2:66064527-66064546 | None:intergenic | 75.0% | |
| TCGCCGCCGTTGCCGTCCAG+CGG | + | chr5.2:66064518-66064537 | MS.gene78618:CDS | 75.0% | |
| ! | GAGGGTGCATGCGCTGCCGG+AGG | - | chr5.2:66064391-66064410 | None:intergenic | 75.0% |
| ! | CGGCAACGGCGGCGAGGGAG+AGG | - | chr5.2:66064513-66064532 | None:intergenic | 80.0% |
| ! | GCGCCGCTGGACGGCAACGG+CGG | - | chr5.2:66064524-66064543 | None:intergenic | 80.0% |
| ! | GCTGGACGGCAACGGCGGCG+AGG | - | chr5.2:66064519-66064538 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 66064114 | 66065270 | 66064114 | ID=MS.gene78618 |
| chr5.2 | mRNA | 66064114 | 66065270 | 66064114 | ID=MS.gene78618.t1;Parent=MS.gene78618 |
| chr5.2 | exon | 66064114 | 66065270 | 66064114 | ID=MS.gene78618.t1.exon1;Parent=MS.gene78618.t1 |
| chr5.2 | CDS | 66064114 | 66065270 | 66064114 | ID=cds.MS.gene78618.t1;Parent=MS.gene78618.t1 |
| Gene Sequence |
| Protein sequence |
