Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78803.t1 | RHN59133.1 | 94 | 300 | 18 | 0 | 1 | 300 | 1 | 300 | 3.80E-161 | 577.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78803.t1 | P40025 | 29.6 | 159 | 104 | 2 | 9 | 159 | 48 | 206 | 1.6e-14 | 81.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78803.t1 | A0A072UHB0 | 94.0 | 300 | 18 | 0 | 1 | 300 | 25 | 324 | 2.8e-161 | 577.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26907 | MS.gene78803 | PPI |
| MS.gene80067 | MS.gene78803 | PPI |
| MS.gene006477 | MS.gene78803 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78803.t1 | MTR_4g021825 | 94.000 | 300 | 18 | 0 | 1 | 300 | 25 | 324 | 0.0 | 570 |
| MS.gene78803.t1 | MTR_7g062150 | 72.848 | 302 | 79 | 2 | 1 | 300 | 1 | 301 | 2.72e-162 | 453 |
| MS.gene78803.t1 | MTR_4g021800 | 75.342 | 292 | 63 | 3 | 10 | 300 | 13 | 296 | 8.25e-156 | 437 |
| MS.gene78803.t1 | MTR_4g021800 | 75.676 | 259 | 54 | 3 | 43 | 300 | 1 | 251 | 1.70e-136 | 386 |
| MS.gene78803.t1 | MTR_7g062150 | 71.429 | 231 | 63 | 2 | 1 | 229 | 1 | 230 | 1.00e-116 | 336 |
| MS.gene78803.t1 | MTR_2g097520 | 54.795 | 292 | 120 | 2 | 10 | 300 | 11 | 291 | 6.16e-112 | 325 |
| MS.gene78803.t1 | MTR_4g021800 | 73.756 | 221 | 52 | 2 | 10 | 229 | 13 | 228 | 2.68e-111 | 322 |
| MS.gene78803.t1 | MTR_4g064380 | 53.793 | 290 | 113 | 3 | 11 | 300 | 13 | 281 | 1.95e-106 | 311 |
| MS.gene78803.t1 | MTR_1g085570 | 49.481 | 289 | 97 | 2 | 12 | 300 | 18 | 257 | 7.85e-95 | 281 |
| MS.gene78803.t1 | MTR_1g085570 | 49.481 | 289 | 97 | 2 | 12 | 300 | 10 | 249 | 8.99e-95 | 280 |
| MS.gene78803.t1 | MTR_1g085570 | 49.310 | 290 | 97 | 3 | 12 | 300 | 10 | 250 | 5.62e-93 | 276 |
| MS.gene78803.t1 | MTR_1g085570 | 49.583 | 240 | 72 | 2 | 12 | 251 | 10 | 200 | 5.28e-77 | 234 |
| MS.gene78803.t1 | MTR_1g104610 | 41.091 | 275 | 116 | 4 | 7 | 278 | 3 | 234 | 1.42e-68 | 214 |
| MS.gene78803.t1 | MTR_1g104610 | 42.276 | 246 | 98 | 3 | 7 | 251 | 3 | 205 | 1.15e-61 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78803.t1 | AT5G02230 | 63.036 | 303 | 86 | 3 | 1 | 300 | 1 | 280 | 3.64e-125 | 358 |
| MS.gene78803.t1 | AT5G02230 | 63.036 | 303 | 86 | 3 | 1 | 300 | 1 | 280 | 3.64e-125 | 358 |
| MS.gene78803.t1 | AT5G02230 | 62.706 | 303 | 87 | 3 | 1 | 300 | 38 | 317 | 1.54e-124 | 358 |
| MS.gene78803.t1 | AT5G59480 | 54.667 | 300 | 112 | 4 | 1 | 296 | 1 | 280 | 1.52e-114 | 332 |
| MS.gene78803.t1 | AT5G59480 | 54.667 | 300 | 112 | 4 | 1 | 296 | 1 | 280 | 1.52e-114 | 332 |
| MS.gene78803.t1 | AT5G59480 | 54.667 | 300 | 112 | 4 | 1 | 296 | 1 | 280 | 1.52e-114 | 332 |
| MS.gene78803.t1 | AT5G59480 | 54.667 | 300 | 112 | 4 | 1 | 296 | 1 | 280 | 1.52e-114 | 332 |
| MS.gene78803.t1 | AT5G59480 | 54.667 | 300 | 111 | 5 | 1 | 296 | 1 | 279 | 1.38e-112 | 327 |
| MS.gene78803.t1 | AT5G59490 | 50.164 | 305 | 108 | 4 | 1 | 300 | 1 | 266 | 6.49e-94 | 279 |
| MS.gene78803.t1 | AT3G62040 | 49.416 | 257 | 78 | 5 | 47 | 300 | 5 | 212 | 1.38e-76 | 233 |
| MS.gene78803.t1 | AT5G59490 | 52.191 | 251 | 81 | 3 | 1 | 251 | 1 | 212 | 2.44e-75 | 230 |
| MS.gene78803.t1 | AT2G32150 | 41.176 | 272 | 115 | 4 | 7 | 278 | 3 | 229 | 8.77e-72 | 222 |
| MS.gene78803.t1 | AT2G32150 | 42.437 | 238 | 95 | 3 | 14 | 251 | 7 | 202 | 4.41e-60 | 191 |
| MS.gene78803.t1 | AT2G32150 | 41.743 | 218 | 85 | 3 | 14 | 231 | 7 | 182 | 1.35e-51 | 168 |
Find 50 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAAGGCAATCATATTT+TGG | 0.184331 | 4.2:-80796083 | None:intergenic |
| ACCCTTCTTTACAAGAATTA+TGG | 0.236813 | 4.2:+80796421 | MS.gene78803:CDS |
| AACAACTCTAGCAGGATTAA+AGG | 0.288819 | 4.2:+80796444 | MS.gene78803:CDS |
| CTGAGGCAATACCTGATCTA+TGG | 0.308840 | 4.2:+80797689 | MS.gene78803:CDS |
| TTCATTTCTATTCAGGCAAT+TGG | 0.316082 | 4.2:+80796540 | MS.gene78803:intron |
| ACAACTTACAAGTTTCCTAT+AGG | 0.317796 | 4.2:-80796761 | None:intergenic |
| TTTGCACTATTACTACTTGT+TGG | 0.327497 | 4.2:-80797050 | None:intergenic |
| ACTTTGTATCCACTCAGTTC+TGG | 0.328194 | 4.2:+80796211 | MS.gene78803:CDS |
| GAAAATGACATTGAGTTTCT+AGG | 0.333993 | 4.2:+80797008 | MS.gene78803:CDS |
| TGGTAGGATTCCACTGGGAT+TGG | 0.353494 | 4.2:-80797114 | None:intergenic |
| GGTAGGATTCCACTGGGATT+GGG | 0.368247 | 4.2:-80797113 | None:intergenic |
| CAACTTACAAGTTTCCTATA+GGG | 0.370712 | 4.2:-80796760 | None:intergenic |
| GGATTAGAAGATTGCTTTGA+AGG | 0.372172 | 4.2:+80796930 | MS.gene78803:CDS |
| TGAAACCAGACCCAGTTCTA+AGG | 0.386637 | 4.2:+80796719 | MS.gene78803:CDS |
| TGTTGATGAGCCTGCCCTAT+AGG | 0.387214 | 4.2:+80796746 | MS.gene78803:CDS |
| CTTAAGACACTAAACATACT+TGG | 0.390861 | 4.2:+80796909 | MS.gene78803:CDS |
| TTCCATAATTCTTGTAAAGA+AGG | 0.391744 | 4.2:-80796423 | None:intergenic |
| GTATTGCCTCAGGTAGGTTA+TGG | 0.426317 | 4.2:-80797678 | None:intergenic |
| ATCAGAAAATGCCATTCAAT+TGG | 0.440833 | 4.2:+80797160 | MS.gene78803:CDS |
| GAGACAACAGTAACTGCTTA+AGG | 0.446956 | 4.2:+80797760 | MS.gene78803:CDS |
| TCTGGTTTCAAGTTCTCATA+AGG | 0.450135 | 4.2:-80796706 | None:intergenic |
| GAGACAATGCTCCTGTGGAT+TGG | 0.475738 | 4.2:-80796978 | None:intergenic |
| TTACAGTTCTATGTGGGTCA+AGG | 0.487086 | 4.2:-80797199 | None:intergenic |
| TCCATAATTCTTGTAAAGAA+GGG | 0.493278 | 4.2:-80796422 | None:intergenic |
| GGCACATCACAAAGAGTTCA+AGG | 0.501955 | 4.2:+80797631 | MS.gene78803:CDS |
| AAGTCAGCCTCCCATAGATC+AGG | 0.508475 | 4.2:-80797700 | None:intergenic |
| AATTATGGAACAACTCTAGC+AGG | 0.515956 | 4.2:+80796436 | MS.gene78803:CDS |
| CATAGATCAGGTATTGCCTC+AGG | 0.516288 | 4.2:-80797688 | None:intergenic |
| TTACAAGTTTCCTATAGGGC+AGG | 0.519783 | 4.2:-80796756 | None:intergenic |
| TTGACTATGACGAACTTCAC+AGG | 0.521165 | 4.2:+80796571 | MS.gene78803:CDS |
| TGGGATTGGGTTGAGCAAGA+TGG | 0.525761 | 4.2:-80797100 | None:intergenic |
| AGTTCTATGTGGGTCAAGGT+TGG | 0.539209 | 4.2:-80797195 | None:intergenic |
| TGAGGCAATACCTGATCTAT+GGG | 0.540080 | 4.2:+80797690 | MS.gene78803:CDS |
| AGTGGGACTCGACACTGTGC+TGG | 0.555191 | 4.2:+80797353 | MS.gene78803:CDS |
| AAGTCAGAAGTTGTGTACAC+TGG | 0.559226 | 4.2:+80797724 | MS.gene78803:CDS |
| TGAATGGTACACAGACTACA+TGG | 0.564695 | 4.2:+80796354 | MS.gene78803:intron |
| AGTGTCCGCAACGTACAAGC+TGG | 0.566223 | 4.2:+80797324 | MS.gene78803:CDS |
| CCTCTGAGACAATGCTCCTG+TGG | 0.579418 | 4.2:-80796983 | None:intergenic |
| AGACTCTTAATCCAATCCAC+AGG | 0.582574 | 4.2:+80796967 | MS.gene78803:CDS |
| CCACAGGAGCATTGTCTCAG+AGG | 0.597345 | 4.2:+80796983 | MS.gene78803:CDS |
| AGTCAGAAGTTGTGTACACT+GGG | 0.622530 | 4.2:+80797725 | MS.gene78803:CDS |
| CGTACAAGCTGGAAAACGAG+TGG | 0.658617 | 4.2:+80797335 | MS.gene78803:CDS |
| GGCAATACCTGATCTATGGG+AGG | 0.662711 | 4.2:+80797693 | MS.gene78803:CDS |
| GTACAAGCTGGAAAACGAGT+GGG | 0.672484 | 4.2:+80797336 | MS.gene78803:CDS |
| TTACTGTTGTCTCTACAGCA+AGG | 0.685440 | 4.2:-80797750 | None:intergenic |
| ATTGCAAGACCAGAACTGAG+TGG | 0.694904 | 4.2:-80796220 | None:intergenic |
| CTTGCTCAACCCAATCCCAG+TGG | 0.708054 | 4.2:+80797104 | MS.gene78803:CDS |
| GATCAGGTATTGCCTCAGGT+AGG | 0.713314 | 4.2:-80797684 | None:intergenic |
| AAGCATCCATAACCTACCTG+AGG | 0.719150 | 4.2:+80797672 | MS.gene78803:CDS |
| ATGGTACACAGACTACATGG+AGG | 0.803678 | 4.2:+80796357 | MS.gene78803:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTTCCTGATAAA+TGG | + | chr4.2:80796472-80796491 | MS.gene78803:intron | 15.0% |
| !! | GCATATTCAAAATTTGAATA+TGG | - | chr4.2:80796503-80796522 | None:intergenic | 20.0% |
| !! | TAACAAAGATAGATCATAAA+GGG | - | chr4.2:80797233-80797252 | None:intergenic | 20.0% |
| !! | TAAGTTGTTTATAACCAAAA+TGG | + | chr4.2:80796776-80796795 | MS.gene78803:intron | 20.0% |
| !! | TTATTGTTTCATTTCTATTC+AGG | + | chr4.2:80796533-80796552 | MS.gene78803:intron | 20.0% |
| !!! | AAGGGTTATGTATTTTTAAA+TGG | + | chr4.2:80796634-80796653 | MS.gene78803:intron | 20.0% |
| !!! | TTATTCTATTGATTCCATTT+TGG | - | chr4.2:80796793-80796812 | None:intergenic | 20.0% |
| ! | AACAAGTAATATATGAGTTG+TGG | - | chr4.2:80797593-80797612 | None:intergenic | 25.0% |
| ! | ATATGGAAATACCATTTATC+AGG | - | chr4.2:80796486-80796505 | None:intergenic | 25.0% |
| ! | GTAACAAAGATAGATCATAA+AGG | - | chr4.2:80797234-80797253 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | - | chr4.2:80797462-80797481 | None:intergenic | 25.0% |
| ! | TCCATAATTCTTGTAAAGAA+GGG | - | chr4.2:80796425-80796444 | None:intergenic | 25.0% |
| ! | TGAAATACTTACCAAAAAGA+AGG | - | chr4.2:80796100-80796119 | None:intergenic | 25.0% |
| ! | TTCCATAATTCTTGTAAAGA+AGG | - | chr4.2:80796426-80796445 | None:intergenic | 25.0% |
| !! | AAAAGAAGGCAATCATATTT+TGG | - | chr4.2:80796086-80796105 | None:intergenic | 25.0% |
| !! | AAATATGATTGCCTTCTTTT+TGG | + | chr4.2:80796086-80796105 | MS.gene78803:CDS | 25.0% |
| !! | ATTTTCTTACAGTTCTATGT+GGG | - | chr4.2:80797208-80797227 | None:intergenic | 25.0% |
| !! | CGAATATGAGAATTTCATTT+TGG | - | chr4.2:80796143-80796162 | None:intergenic | 25.0% |
| !! | GATACTTTTAGTAACATGAA+TGG | + | chr4.2:80796338-80796357 | MS.gene78803:intron | 25.0% |
| !! | TTGCAAACAATTGATGTTTT+TGG | - | chr4.2:80797137-80797156 | None:intergenic | 25.0% |
| !!! | AAACAATTGATGTTTTTGGT+AGG | - | chr4.2:80797133-80797152 | None:intergenic | 25.0% |
| AAATCTGCAGAACAATATCA+TGG | - | chr4.2:80796184-80796203 | None:intergenic | 30.0% | |
| ACAACTTACAAGTTTCCTAT+AGG | - | chr4.2:80796764-80796783 | None:intergenic | 30.0% | |
| ACCCTTCTTTACAAGAATTA+TGG | + | chr4.2:80796421-80796440 | MS.gene78803:CDS | 30.0% | |
| ATCAGAAAATGCCATTCAAT+TGG | + | chr4.2:80797160-80797179 | MS.gene78803:CDS | 30.0% | |
| CAACTTACAAGTTTCCTATA+GGG | - | chr4.2:80796763-80796782 | None:intergenic | 30.0% | |
| CTAGCAGTTTATTTAAACAG+AGG | - | chr4.2:80797548-80797567 | None:intergenic | 30.0% | |
| CTTAAGACACTAAACATACT+TGG | + | chr4.2:80796909-80796928 | MS.gene78803:CDS | 30.0% | |
| GAAAATGACATTGAGTTTCT+AGG | + | chr4.2:80797008-80797027 | MS.gene78803:CDS | 30.0% | |
| TAGAATAACGTCAGAAAAGA+CGG | + | chr4.2:80796805-80796824 | MS.gene78803:intron | 30.0% | |
| TTCATTTCTATTCAGGCAAT+TGG | + | chr4.2:80796540-80796559 | MS.gene78803:intron | 30.0% | |
| TTTGCACTATTACTACTTGT+TGG | - | chr4.2:80797053-80797072 | None:intergenic | 30.0% | |
| ! | AATTGAATGGCATTTTCTGA+TGG | - | chr4.2:80797161-80797180 | None:intergenic | 30.0% |
| ! | ATCAACATTTTCCTTAGAAC+TGG | - | chr4.2:80796733-80796752 | None:intergenic | 30.0% |
| ! | CATAAATCGTCAGATTTTCT+TGG | - | chr4.2:80796400-80796419 | None:intergenic | 30.0% |
| ! | GATTTTCTTACAGTTCTATG+TGG | - | chr4.2:80797209-80797228 | None:intergenic | 30.0% |
| ! | GCATGTCGACAAAATTTTAA+AGG | + | chr4.2:80796244-80796263 | MS.gene78803:CDS | 30.0% |
| ! | TCAACATTTTCCTTAGAACT+GGG | - | chr4.2:80796732-80796751 | None:intergenic | 30.0% |
| ! | TCATTTTCAGTTGTTCTTTG+AGG | + | chr4.2:80797299-80797318 | MS.gene78803:intron | 30.0% |
| !! | TATTTTGAGAGCCAATTGAA+TGG | - | chr4.2:80797174-80797193 | None:intergenic | 30.0% |
| !!! | AGGCAATCATATTTTGGTTT+TGG | - | chr4.2:80796080-80796099 | None:intergenic | 30.0% |
| AACAACTCTAGCAGGATTAA+AGG | + | chr4.2:80796444-80796463 | MS.gene78803:CDS | 35.0% | |
| AATTATGGAACAACTCTAGC+AGG | + | chr4.2:80796436-80796455 | MS.gene78803:CDS | 35.0% | |
| GGATTAGAAGATTGCTTTGA+AGG | + | chr4.2:80796930-80796949 | MS.gene78803:CDS | 35.0% | |
| GTTATAGAGCTATTACGTAG+CGG | - | chr4.2:80797526-80797545 | None:intergenic | 35.0% | |
| ! | AACAAGTGAAGCATTAGTAG+TGG | - | chr4.2:80796848-80796867 | None:intergenic | 35.0% |
| ! | TTGCTTGCTTAGTTCTTCAT+TGG | + | chr4.2:80797269-80797288 | MS.gene78803:intron | 35.0% |
| !! | TCTGGTTTCAAGTTCTCATA+AGG | - | chr4.2:80796709-80796728 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTTTGGTGTGAAG+AGG | - | chr4.2:80796070-80796089 | None:intergenic | 35.0% |
| AAGTCAGAAGTTGTGTACAC+TGG | + | chr4.2:80797724-80797743 | MS.gene78803:CDS | 40.0% | |
| ACTTTGTATCCACTCAGTTC+TGG | + | chr4.2:80796211-80796230 | MS.gene78803:CDS | 40.0% | |
| AGACTCTTAATCCAATCCAC+AGG | + | chr4.2:80796967-80796986 | MS.gene78803:CDS | 40.0% | |
| AGTCAGAAGTTGTGTACACT+GGG | + | chr4.2:80797725-80797744 | MS.gene78803:CDS | 40.0% | |
| ATGAGTTGTGGCTCGTTAAA+AGG | - | chr4.2:80797581-80797600 | None:intergenic | 40.0% | |
| CTCACTCTCAAACTGCTAAA+GGG | + | chr4.2:80796616-80796635 | MS.gene78803:intron | 40.0% | |
| GCTATAGCACTATTGCTTAG+AGG | - | chr4.2:80797438-80797457 | None:intergenic | 40.0% | |
| TCTCACTCTCAAACTGCTAA+AGG | + | chr4.2:80796615-80796634 | MS.gene78803:intron | 40.0% | |
| TGAATGGTACACAGACTACA+TGG | + | chr4.2:80796354-80796373 | MS.gene78803:intron | 40.0% | |
| TGAGGCAATACCTGATCTAT+GGG | + | chr4.2:80797690-80797709 | MS.gene78803:CDS | 40.0% | |
| TTACAAGTTTCCTATAGGGC+AGG | - | chr4.2:80796759-80796778 | None:intergenic | 40.0% | |
| TTACAGTTCTATGTGGGTCA+AGG | - | chr4.2:80797202-80797221 | None:intergenic | 40.0% | |
| TTACTGTTGTCTCTACAGCA+AGG | - | chr4.2:80797753-80797772 | None:intergenic | 40.0% | |
| TTGACTATGACGAACTTCAC+AGG | + | chr4.2:80796571-80796590 | MS.gene78803:CDS | 40.0% | |
| ! | ATTTTCCTTAGAACTGGGTC+TGG | - | chr4.2:80796727-80796746 | None:intergenic | 40.0% |
| !!! | CTCCTTGCAGTTTTGTTCAT+GGG | + | chr4.2:80796677-80796696 | MS.gene78803:intron | 40.0% |
| !!! | GTTTTTGGTAGGATTCCACT+GGG | - | chr4.2:80797122-80797141 | None:intergenic | 40.0% |
| !!! | TCTCCTTGCAGTTTTGTTCA+TGG | + | chr4.2:80796676-80796695 | MS.gene78803:intron | 40.0% |
| !!! | TGTTTTTGGTAGGATTCCAC+TGG | - | chr4.2:80797123-80797142 | None:intergenic | 40.0% |
| AAGCATCCATAACCTACCTG+AGG | + | chr4.2:80797672-80797691 | MS.gene78803:CDS | 45.0% | |
| AGTTCTATGTGGGTCAAGGT+TGG | - | chr4.2:80797198-80797217 | None:intergenic | 45.0% | |
| ATGGTACACAGACTACATGG+AGG | + | chr4.2:80796357-80796376 | MS.gene78803:intron | 45.0% | |
| ATTGCAAGACCAGAACTGAG+TGG | - | chr4.2:80796223-80796242 | None:intergenic | 45.0% | |
| CTCCCATGAACAAAACTGCA+AGG | - | chr4.2:80796682-80796701 | None:intergenic | 45.0% | |
| CTCTTTGTGATGTGCCAATC+TGG | - | chr4.2:80797627-80797646 | None:intergenic | 45.0% | |
| CTGAGGCAATACCTGATCTA+TGG | + | chr4.2:80797689-80797708 | MS.gene78803:CDS | 45.0% | |
| GGCACATCACAAAGAGTTCA+AGG | + | chr4.2:80797631-80797650 | MS.gene78803:CDS | 45.0% | |
| GTACAAGCTGGAAAACGAGT+GGG | + | chr4.2:80797336-80797355 | MS.gene78803:CDS | 45.0% | |
| GTATTGCCTCAGGTAGGTTA+TGG | - | chr4.2:80797681-80797700 | None:intergenic | 45.0% | |
| GTTGATTGCACCATCCAGAT+TGG | + | chr4.2:80797610-80797629 | MS.gene78803:intron | 45.0% | |
| TGAAACCAGACCCAGTTCTA+AGG | + | chr4.2:80796719-80796738 | MS.gene78803:CDS | 45.0% | |
| TTGTGATGTGCCAATCTGGA+TGG | - | chr4.2:80797623-80797642 | None:intergenic | 45.0% | |
| ! | ACACTGTGCTGGTAAGTCAT+TGG | + | chr4.2:80797364-80797383 | MS.gene78803:intron | 45.0% |
| ! | CATAGATCAGGTATTGCCTC+AGG | - | chr4.2:80797691-80797710 | None:intergenic | 45.0% |
| ! | GTTTTCCAGCTTGTACGTTG+CGG | - | chr4.2:80797332-80797351 | None:intergenic | 45.0% |
| AAGTCAGCCTCCCATAGATC+AGG | - | chr4.2:80797703-80797722 | None:intergenic | 50.0% | |
| CGTACAAGCTGGAAAACGAG+TGG | + | chr4.2:80797335-80797354 | MS.gene78803:CDS | 50.0% | |
| GAGACAATGCTCCTGTGGAT+TGG | - | chr4.2:80796981-80797000 | None:intergenic | 50.0% | |
| GGCAATACCTGATCTATGGG+AGG | + | chr4.2:80797693-80797712 | MS.gene78803:CDS | 50.0% | |
| GGTAGGATTCCACTGGGATT+GGG | - | chr4.2:80797116-80797135 | None:intergenic | 50.0% | |
| TGGTAGGATTCCACTGGGAT+TGG | - | chr4.2:80797117-80797136 | None:intergenic | 50.0% | |
| ! | GATCAGGTATTGCCTCAGGT+AGG | - | chr4.2:80797687-80797706 | None:intergenic | 50.0% |
| ! | TGTTGATGAGCCTGCCCTAT+AGG | + | chr4.2:80796746-80796765 | MS.gene78803:CDS | 50.0% |
| !! | TGGGATTGGGTTGAGCAAGA+TGG | - | chr4.2:80797103-80797122 | None:intergenic | 50.0% |
| AGTGTCCGCAACGTACAAGC+TGG | + | chr4.2:80797324-80797343 | MS.gene78803:CDS | 55.0% | |
| CTTGCTCAACCCAATCCCAG+TGG | + | chr4.2:80797104-80797123 | MS.gene78803:CDS | 55.0% | |
| !! | CCACAGGAGCATTGTCTCAG+AGG | + | chr4.2:80796983-80797002 | MS.gene78803:CDS | 55.0% |
| !! | CCTCTGAGACAATGCTCCTG+TGG | - | chr4.2:80796986-80797005 | None:intergenic | 55.0% |
| AGTGGGACTCGACACTGTGC+TGG | + | chr4.2:80797353-80797372 | MS.gene78803:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 80796053 | 80797780 | 80796053 | ID=MS.gene78803 |
| chr4.2 | mRNA | 80796053 | 80797780 | 80796053 | ID=MS.gene78803.t1;Parent=MS.gene78803 |
| chr4.2 | exon | 80796053 | 80796107 | 80796053 | ID=MS.gene78803.t1.exon1;Parent=MS.gene78803.t1 |
| chr4.2 | CDS | 80796053 | 80796107 | 80796053 | ID=cds.MS.gene78803.t1;Parent=MS.gene78803.t1 |
| chr4.2 | exon | 80796200 | 80796265 | 80796200 | ID=MS.gene78803.t1.exon2;Parent=MS.gene78803.t1 |
| chr4.2 | CDS | 80796200 | 80796265 | 80796200 | ID=cds.MS.gene78803.t1;Parent=MS.gene78803.t1 |
| chr4.2 | exon | 80796368 | 80796465 | 80796368 | ID=MS.gene78803.t1.exon3;Parent=MS.gene78803.t1 |
| chr4.2 | CDS | 80796368 | 80796465 | 80796368 | ID=cds.MS.gene78803.t1;Parent=MS.gene78803.t1 |
| chr4.2 | exon | 80796555 | 80796592 | 80796555 | ID=MS.gene78803.t1.exon4;Parent=MS.gene78803.t1 |
| chr4.2 | CDS | 80796555 | 80796592 | 80796555 | ID=cds.MS.gene78803.t1;Parent=MS.gene78803.t1 |
| chr4.2 | exon | 80796687 | 80796774 | 80796687 | ID=MS.gene78803.t1.exon5;Parent=MS.gene78803.t1 |
| chr4.2 | CDS | 80796687 | 80796774 | 80796687 | ID=cds.MS.gene78803.t1;Parent=MS.gene78803.t1 |
| chr4.2 | exon | 80796879 | 80797217 | 80796879 | ID=MS.gene78803.t1.exon6;Parent=MS.gene78803.t1 |
| chr4.2 | CDS | 80796879 | 80797217 | 80796879 | ID=cds.MS.gene78803.t1;Parent=MS.gene78803.t1 |
| chr4.2 | exon | 80797309 | 80797374 | 80797309 | ID=MS.gene78803.t1.exon7;Parent=MS.gene78803.t1 |
| chr4.2 | CDS | 80797309 | 80797374 | 80797309 | ID=cds.MS.gene78803.t1;Parent=MS.gene78803.t1 |
| chr4.2 | exon | 80797628 | 80797780 | 80797628 | ID=MS.gene78803.t1.exon8;Parent=MS.gene78803.t1 |
| chr4.2 | CDS | 80797628 | 80797780 | 80797628 | ID=cds.MS.gene78803.t1;Parent=MS.gene78803.t1 |
| Gene Sequence |
| Protein sequence |
