Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78914.t1 | XP_013445162.1 | 76.5 | 469 | 94 | 2 | 1 | 453 | 159 | 627 | 9.50E-196 | 693 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78914.t1 | Q40392 | 36.3 | 465 | 262 | 10 | 1 | 446 | 159 | 608 | 3.9e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78914.t1 | A0A072U068 | 76.5 | 469 | 94 | 2 | 1 | 453 | 159 | 627 | 6.8e-196 | 693.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052037 | MS.gene78914 | 0.826141 | 3.19E-54 | -1.69E-46 |
| MS.gene052311 | MS.gene78914 | 0.800841 | 1.19E-48 | -1.69E-46 |
| MS.gene052447 | MS.gene78914 | 0.804708 | 1.90E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene78914 | 0.813273 | 2.78E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene78914 | 0.805469 | 1.32E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene78914 | 0.825164 | 5.44E-54 | -1.69E-46 |
| MS.gene058294 | MS.gene78914 | 0.805826 | 1.11E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene78914 | 0.802801 | 4.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAATTGAAAGCTTATTTC+TGG | 0.130249 | 8.3:+55805831 | MS.gene78914:CDS |
| AGAGAAAATTCAGTGAAATT+TGG | 0.193366 | 8.3:+55804788 | MS.gene78914:CDS |
| TACTTCTTTACCGTCATCTT+TGG | 0.218791 | 8.3:-55805860 | None:intergenic |
| TCTGATGATGTAGTCCAATT+AGG | 0.236852 | 8.3:+55804665 | MS.gene78914:CDS |
| TTCCAACACTCTTAAACTAT+TGG | 0.238215 | 8.3:-55805974 | None:intergenic |
| TTGAGTATGCCAAGTTTCTT+TGG | 0.261452 | 8.3:-55806039 | None:intergenic |
| CCATTCCATATATCCCTAAT+TGG | 0.280853 | 8.3:-55804679 | None:intergenic |
| ACTTCTTTACCGTCATCTTT+GGG | 0.292591 | 8.3:-55805859 | None:intergenic |
| AATCTCTTGATTTGCTTTGT+TGG | 0.299103 | 8.3:+55805095 | MS.gene78914:CDS |
| GCAGAAGCTCAAACAGAAAA+AGG | 0.299440 | 8.3:+55804901 | MS.gene78914:CDS |
| GAACAAAGTAATCTCACTTC+TGG | 0.302171 | 8.3:+55804634 | MS.gene78914:CDS |
| CCAACGAATCAAAGCTTATC+TGG | 0.321465 | 8.3:-55805309 | None:intergenic |
| TACACAATACTTGCCTGAAT+TGG | 0.336586 | 8.3:-55806093 | None:intergenic |
| GTAGTCCAATTAGGGATATA+TGG | 0.343192 | 8.3:+55804674 | MS.gene78914:CDS |
| GGAAGACGTGGAAGACATAC+TGG | 0.346756 | 8.3:+55805390 | MS.gene78914:CDS |
| TTTCTTCAATGGACGTGAAC+TGG | 0.361199 | 8.3:+55805369 | MS.gene78914:CDS |
| TCCAACACTCTTAAACTATT+GGG | 0.361804 | 8.3:-55805973 | None:intergenic |
| GTAATCTCACTTCTGGATCT+TGG | 0.363998 | 8.3:+55804641 | MS.gene78914:CDS |
| GATATTGCTTGTTTCTTCAA+TGG | 0.367306 | 8.3:+55805358 | MS.gene78914:CDS |
| GCAGTAGGCTCCTCCTTGTT+TGG | 0.367855 | 8.3:+55805211 | MS.gene78914:CDS |
| GTAATTATGATCCTGCTTCC+AGG | 0.375005 | 8.3:-55804998 | None:intergenic |
| TTGAGCTTCTGCTTTATGAT+TGG | 0.375212 | 8.3:-55804890 | None:intergenic |
| TTCAAAATGTCTGCATAACT+TGG | 0.380465 | 8.3:-55805145 | None:intergenic |
| AACGACAAGTAAACCAATTC+AGG | 0.390268 | 8.3:+55806080 | MS.gene78914:CDS |
| AGCTTATCTGGAGTATTGTT+AGG | 0.391603 | 8.3:-55805297 | None:intergenic |
| TTCTTTGGATGAAAATCATC+TGG | 0.392574 | 8.3:-55806024 | None:intergenic |
| TCCCAATAGTTTAAGAGTGT+TGG | 0.411087 | 8.3:+55805972 | MS.gene78914:CDS |
| CTGATGATGTAGTCCAATTA+GGG | 0.418153 | 8.3:+55804666 | MS.gene78914:CDS |
| GCAGGAGGATCCGATTGGTT+TGG | 0.424090 | 8.3:+55804974 | MS.gene78914:CDS |
| TTTAAGAGTGTTGGAATGGT+GGG | 0.426736 | 8.3:+55805981 | MS.gene78914:CDS |
| CCAGATAAGCTTTGATTCGT+TGG | 0.429048 | 8.3:+55805309 | MS.gene78914:CDS |
| CAAGAGAACGTAGTAGGTTA+TGG | 0.433885 | 8.3:+55805560 | MS.gene78914:CDS |
| AAGCAGCTACAGGTTATTGC+AGG | 0.434078 | 8.3:+55804956 | MS.gene78914:CDS |
| CCATTAGCTTTGAGAGCAGT+AGG | 0.436651 | 8.3:+55805196 | MS.gene78914:CDS |
| ATGACGGTAAAGAAGTATGT+TGG | 0.438689 | 8.3:+55805866 | MS.gene78914:CDS |
| TCAATCAGTGACCAGTTTGA+AGG | 0.444736 | 8.3:+55804743 | MS.gene78914:CDS |
| TTCGTTGGAGGAAGAAGAAA+AGG | 0.446081 | 8.3:+55805324 | MS.gene78914:CDS |
| GCTCACGTGGTGATTCTTGT+CGG | 0.447236 | 8.3:-55805537 | None:intergenic |
| ATTGGTTTGGTCCTGGAAGC+AGG | 0.448138 | 8.3:+55804987 | MS.gene78914:CDS |
| CCTACTGCTCTCAAAGCTAA+TGG | 0.450846 | 8.3:-55805196 | None:intergenic |
| ATATATGGAATGGGTGGGAT+CGG | 0.454579 | 8.3:+55804689 | MS.gene78914:CDS |
| GCTTAGTAAGATGTGTGAAT+TGG | 0.460620 | 8.3:+55804835 | MS.gene78914:CDS |
| GAATTGGTTTACTTGTCGTT+AGG | 0.462418 | 8.3:-55806077 | None:intergenic |
| GTTTAAGAGTGTTGGAATGG+TGG | 0.466188 | 8.3:+55805980 | MS.gene78914:CDS |
| TCTTACTAAGCATAGTCTCT+TGG | 0.469267 | 8.3:-55804823 | None:intergenic |
| TGACGGTAAAGAAGTATGTT+GGG | 0.492035 | 8.3:+55805867 | MS.gene78914:CDS |
| CCAATTAGGGATATATGGAA+TGG | 0.494813 | 8.3:+55804679 | MS.gene78914:CDS |
| AAACTATTGGGAAGATGTGT+GGG | 0.496249 | 8.3:-55805961 | None:intergenic |
| GTGTGGGGCCTCTGTTAAAA+CGG | 0.496956 | 8.3:-55805945 | None:intergenic |
| GGATCCGATTGGTTTGGTCC+TGG | 0.498872 | 8.3:+55804980 | MS.gene78914:CDS |
| GAAAGCAAGAACCTTCAAAC+TGG | 0.499267 | 8.3:-55804754 | None:intergenic |
| TGACAAATTGAAGCAGCTAC+AGG | 0.507064 | 8.3:+55804946 | MS.gene78914:CDS |
| TAGGGTTGATATAATATATG+AGG | 0.511725 | 8.3:+55805051 | MS.gene78914:CDS |
| AAATGAATGGGAAAGTGCAT+TGG | 0.519364 | 8.3:+55805243 | MS.gene78914:CDS |
| CATAACCTACTACGTTCTCT+TGG | 0.520650 | 8.3:-55805559 | None:intergenic |
| GTTACTGCTGATCAAGCTGT+TGG | 0.531327 | 8.3:+55804596 | MS.gene78914:CDS |
| GCATTTGTTAGCAATGCATA+GGG | 0.540353 | 8.3:+55805033 | MS.gene78914:CDS |
| GCTTCCAGGACCAAACCAAT+CGG | 0.547850 | 8.3:-55804984 | None:intergenic |
| ATAGTTTAAGAGTGTTGGAA+TGG | 0.551845 | 8.3:+55805977 | MS.gene78914:CDS |
| CAATTAGGGATATATGGAAT+GGG | 0.554444 | 8.3:+55804680 | MS.gene78914:CDS |
| TTAAGAGTGTTGGAATGGTG+GGG | 0.555644 | 8.3:+55805982 | MS.gene78914:CDS |
| TAGTCTCTTGGAGATGCTCT+AGG | 0.556285 | 8.3:-55804811 | None:intergenic |
| AGCATTTGTTAGCAATGCAT+AGG | 0.557419 | 8.3:+55805032 | MS.gene78914:CDS |
| CTTTACCCATGTCTTCAACC+AGG | 0.558386 | 8.3:-55805507 | None:intergenic |
| GAGGTAGATGAATTAAGTGA+AGG | 0.559827 | 8.3:+55805070 | MS.gene78914:CDS |
| CTGGATTTCCCCAAAGATGA+CGG | 0.559884 | 8.3:+55805850 | MS.gene78914:CDS |
| GTGAGCCAAGAGAACGTAGT+AGG | 0.560863 | 8.3:+55805554 | MS.gene78914:CDS |
| GATAAGCTTTGATTCGTTGG+AGG | 0.565802 | 8.3:+55805312 | MS.gene78914:CDS |
| TAAACTATTGGGAAGATGTG+TGG | 0.566218 | 8.3:-55805962 | None:intergenic |
| TCTTGTGACATTGCATGACC+TGG | 0.568061 | 8.3:+55805489 | MS.gene78914:CDS |
| CTTCTTTACCGTCATCTTTG+GGG | 0.571665 | 8.3:-55805858 | None:intergenic |
| TAAACTTGAAGATGTGAGTG+AGG | 0.573282 | 8.3:+55804862 | MS.gene78914:CDS |
| CTACGTTCTCTTGGCTCACG+TGG | 0.578015 | 8.3:-55805550 | None:intergenic |
| GAAGACGTGGAAGACATACT+GGG | 0.580773 | 8.3:+55805391 | MS.gene78914:CDS |
| GAGATTACTTTGTTCACTCG+AGG | 0.588749 | 8.3:-55804626 | None:intergenic |
| GCATGACCTGGTTGAAGACA+TGG | 0.590529 | 8.3:+55805501 | MS.gene78914:CDS |
| GGTAAAGAAGTATGTTGGGA+TGG | 0.590741 | 8.3:+55805871 | MS.gene78914:CDS |
| AAACTTGAAGATGTGAGTGA+GGG | 0.594430 | 8.3:+55804863 | MS.gene78914:CDS |
| TTAGGGATATATGGAATGGG+TGG | 0.603772 | 8.3:+55804683 | MS.gene78914:CDS |
| TCATCTGGTAATGACGGTGA+AGG | 0.611668 | 8.3:-55806009 | None:intergenic |
| CAGCTACAGGTTATTGCAGG+AGG | 0.626029 | 8.3:+55804959 | MS.gene78914:CDS |
| AATGGGAAAGTGCATTGGAT+CGG | 0.627693 | 8.3:+55805248 | MS.gene78914:CDS |
| ATTTATTGAGACTATCGTTG+AGG | 0.629386 | 8.3:+55804559 | MS.gene78914:CDS |
| ATCTCTCGTAAAGATTGACA+AGG | 0.631557 | 8.3:+55805465 | MS.gene78914:CDS |
| TTATTGCAGGAGGATCCGAT+TGG | 0.634794 | 8.3:+55804969 | MS.gene78914:CDS |
| TAGGGATATATGGAATGGGT+GGG | 0.637214 | 8.3:+55804684 | MS.gene78914:CDS |
| TGAAAATCATCTGGTAATGA+CGG | 0.644325 | 8.3:-55806015 | None:intergenic |
| AACTATTGGGAAGATGTGTG+GGG | 0.647737 | 8.3:-55805960 | None:intergenic |
| TGGACGTGAACTGGAAGACG+TGG | 0.650352 | 8.3:+55805378 | MS.gene78914:CDS |
| CAGGATCATAATTACAACAC+GGG | 0.652399 | 8.3:+55805006 | MS.gene78914:CDS |
| ATTGTTAGGATATCGTTGTG+AGG | 0.669538 | 8.3:-55805283 | None:intergenic |
| TCTCTCGTAAAGATTGACAA+GGG | 0.703026 | 8.3:+55805466 | MS.gene78914:CDS |
| AAGACGTGGAAGACATACTG+GGG | 0.707802 | 8.3:+55805392 | MS.gene78914:CDS |
| CATGACCTGGTTGAAGACAT+GGG | 0.710013 | 8.3:+55805502 | MS.gene78914:CDS |
| CAAAGCTAATGGAAGCCCAG+AGG | 0.715700 | 8.3:-55805185 | None:intergenic |
| GCAGGATCATAATTACAACA+CGG | 0.720799 | 8.3:+55805005 | MS.gene78914:CDS |
| AGACGTGGAAGACATACTGG+GGG | 0.745924 | 8.3:+55805393 | MS.gene78914:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACTGTTGTGAAT+TGG | - | chr8.3:55805704-55805723 | None:intergenic | 20.0% |
| !! | TAAAATTGAAAGCTTATTTC+TGG | + | chr8.3:55805831-55805850 | MS.gene78914:CDS | 20.0% |
| !!! | ACTGTACTTTTTTTCTTAAA+AGG | + | chr8.3:55805801-55805820 | MS.gene78914:intron | 20.0% |
| ! | ACAATACAATTATAGATGCT+TGG | - | chr8.3:55805775-55805794 | None:intergenic | 25.0% |
| ! | AGAGAAAATTCAGTGAAATT+TGG | + | chr8.3:55804788-55804807 | MS.gene78914:CDS | 25.0% |
| ! | TGGCAAAAACATAAATGAAT+GGG | + | chr8.3:55805231-55805250 | MS.gene78914:CDS | 25.0% |
| ! | TTGGCAAAAACATAAATGAA+TGG | + | chr8.3:55805230-55805249 | MS.gene78914:CDS | 25.0% |
| !! | CAAACAGAAAAAGGTTATTT+TGG | + | chr8.3:55804910-55804929 | MS.gene78914:CDS | 25.0% |
| !!! | ATTTATGTTTTTGCCAAACA+AGG | - | chr8.3:55805227-55805246 | None:intergenic | 25.0% |
| !!! | TAGGGTTGATATAATATATG+AGG | + | chr8.3:55805051-55805070 | MS.gene78914:CDS | 25.0% |
| !!! | TCACGTTTTAGAAGAAAATT+CGG | + | chr8.3:55805600-55805619 | MS.gene78914:CDS | 25.0% |
| ATTTATTGAGACTATCGTTG+AGG | + | chr8.3:55804559-55804578 | MS.gene78914:CDS | 30.0% | |
| CAATTAGGGATATATGGAAT+GGG | + | chr8.3:55804680-55804699 | MS.gene78914:CDS | 30.0% | |
| TCCAACACTCTTAAACTATT+GGG | - | chr8.3:55805976-55805995 | None:intergenic | 30.0% | |
| TTCAAAATGTCTGCATAACT+TGG | - | chr8.3:55805148-55805167 | None:intergenic | 30.0% | |
| TTCCAACACTCTTAAACTAT+TGG | - | chr8.3:55805977-55805996 | None:intergenic | 30.0% | |
| TTCTTTGGATGAAAATCATC+TGG | - | chr8.3:55806027-55806046 | None:intergenic | 30.0% | |
| ! | GATATTGCTTGTTTCTTCAA+TGG | + | chr8.3:55805358-55805377 | MS.gene78914:CDS | 30.0% |
| ! | GATTTTCATCCAAAGAAACT+TGG | + | chr8.3:55806030-55806049 | MS.gene78914:CDS | 30.0% |
| ! | TGAAAATCATCTGGTAATGA+CGG | - | chr8.3:55806018-55806037 | None:intergenic | 30.0% |
| ! | TTCTAACAACAAGTGTTTTG+AGG | - | chr8.3:55805921-55805940 | None:intergenic | 30.0% |
| !! | AATCTCTTGATTTGCTTTGT+TGG | + | chr8.3:55805095-55805114 | MS.gene78914:CDS | 30.0% |
| !! | ATAGTTTAAGAGTGTTGGAA+TGG | + | chr8.3:55805977-55805996 | MS.gene78914:CDS | 30.0% |
| AAACTATTGGGAAGATGTGT+GGG | - | chr8.3:55805964-55805983 | None:intergenic | 35.0% | |
| AAACTTGAAGATGTGAGTGA+GGG | + | chr8.3:55804863-55804882 | MS.gene78914:CDS | 35.0% | |
| AACGACAAGTAAACCAATTC+AGG | + | chr8.3:55806080-55806099 | MS.gene78914:CDS | 35.0% | |
| ACGACAAGTAAACCAATTCA+GGG | + | chr8.3:55806081-55806100 | MS.gene78914:CDS | 35.0% | |
| ACTTCTTTACCGTCATCTTT+GGG | - | chr8.3:55805862-55805881 | None:intergenic | 35.0% | |
| AGCAATCAACTCATATATGC+TGG | + | chr8.3:55805625-55805644 | MS.gene78914:intron | 35.0% | |
| ATCTCTCGTAAAGATTGACA+AGG | + | chr8.3:55805465-55805484 | MS.gene78914:CDS | 35.0% | |
| ATTGTTAGGATATCGTTGTG+AGG | - | chr8.3:55805286-55805305 | None:intergenic | 35.0% | |
| CAACAGAAGATAAGAAACAG+AGG | - | chr8.3:55805675-55805694 | None:intergenic | 35.0% | |
| CAGGATCATAATTACAACAC+GGG | + | chr8.3:55805006-55805025 | MS.gene78914:CDS | 35.0% | |
| CCAATTAGGGATATATGGAA+TGG | + | chr8.3:55804679-55804698 | MS.gene78914:CDS | 35.0% | |
| CCATTCCATATATCCCTAAT+TGG | - | chr8.3:55804682-55804701 | None:intergenic | 35.0% | |
| GAACAAAGTAATCTCACTTC+TGG | + | chr8.3:55804634-55804653 | MS.gene78914:CDS | 35.0% | |
| GAGGTAGATGAATTAAGTGA+AGG | + | chr8.3:55805070-55805089 | MS.gene78914:CDS | 35.0% | |
| GCAGGATCATAATTACAACA+CGG | + | chr8.3:55805005-55805024 | MS.gene78914:CDS | 35.0% | |
| GCTTAGTAAGATGTGTGAAT+TGG | + | chr8.3:55804835-55804854 | MS.gene78914:CDS | 35.0% | |
| GTAGTCCAATTAGGGATATA+TGG | + | chr8.3:55804674-55804693 | MS.gene78914:CDS | 35.0% | |
| TAAACTATTGGGAAGATGTG+TGG | - | chr8.3:55805965-55805984 | None:intergenic | 35.0% | |
| TAAACTTGAAGATGTGAGTG+AGG | + | chr8.3:55804862-55804881 | MS.gene78914:CDS | 35.0% | |
| TACTTCTTTACCGTCATCTT+TGG | - | chr8.3:55805863-55805882 | None:intergenic | 35.0% | |
| TCTCTCGTAAAGATTGACAA+GGG | + | chr8.3:55805466-55805485 | MS.gene78914:CDS | 35.0% | |
| TCTTACTAAGCATAGTCTCT+TGG | - | chr8.3:55804826-55804845 | None:intergenic | 35.0% | |
| TTGAGCTTCTGCTTTATGAT+TGG | - | chr8.3:55804893-55804912 | None:intergenic | 35.0% | |
| TTGAGTATGCCAAGTTTCTT+TGG | - | chr8.3:55806042-55806061 | None:intergenic | 35.0% | |
| ! | AAATGAATGGGAAAGTGCAT+TGG | + | chr8.3:55805243-55805262 | MS.gene78914:CDS | 35.0% |
| ! | AGCATTTGTTAGCAATGCAT+AGG | + | chr8.3:55805032-55805051 | MS.gene78914:CDS | 35.0% |
| ! | ATGACGGTAAAGAAGTATGT+TGG | + | chr8.3:55805866-55805885 | MS.gene78914:CDS | 35.0% |
| ! | CTGATGATGTAGTCCAATTA+GGG | + | chr8.3:55804666-55804685 | MS.gene78914:CDS | 35.0% |
| ! | GAATTGGTTTACTTGTCGTT+AGG | - | chr8.3:55806080-55806099 | None:intergenic | 35.0% |
| ! | GCATTTGTTAGCAATGCATA+GGG | + | chr8.3:55805033-55805052 | MS.gene78914:CDS | 35.0% |
| ! | TCCCAATAGTTTAAGAGTGT+TGG | + | chr8.3:55805972-55805991 | MS.gene78914:CDS | 35.0% |
| ! | TCTGATGATGTAGTCCAATT+AGG | + | chr8.3:55804665-55804684 | MS.gene78914:CDS | 35.0% |
| ! | TGACGGTAAAGAAGTATGTT+GGG | + | chr8.3:55805867-55805886 | MS.gene78914:CDS | 35.0% |
| !! | AGAAATGTCCGTTTTAACAG+AGG | + | chr8.3:55805937-55805956 | MS.gene78914:CDS | 35.0% |
| !! | AGCTTATCTGGAGTATTGTT+AGG | - | chr8.3:55805300-55805319 | None:intergenic | 35.0% |
| !! | ATGTACTCACTTTTACCTCT+GGG | + | chr8.3:55805170-55805189 | MS.gene78914:CDS | 35.0% |
| !! | TATGTTTTTGCCAAACAAGG+AGG | - | chr8.3:55805224-55805243 | None:intergenic | 35.0% |
| !! | TTTAAGAGTGTTGGAATGGT+GGG | + | chr8.3:55805981-55806000 | MS.gene78914:CDS | 35.0% |
| AACTATTGGGAAGATGTGTG+GGG | - | chr8.3:55805963-55805982 | None:intergenic | 40.0% | |
| ATATATGGAATGGGTGGGAT+CGG | + | chr8.3:55804689-55804708 | MS.gene78914:CDS | 40.0% | |
| CAAGAGAACGTAGTAGGTTA+TGG | + | chr8.3:55805560-55805579 | MS.gene78914:CDS | 40.0% | |
| CATAACCTACTACGTTCTCT+TGG | - | chr8.3:55805562-55805581 | None:intergenic | 40.0% | |
| CCAACGAATCAAAGCTTATC+TGG | - | chr8.3:55805312-55805331 | None:intergenic | 40.0% | |
| CTTCTTTACCGTCATCTTTG+GGG | - | chr8.3:55805861-55805880 | None:intergenic | 40.0% | |
| GAAAGCAAGAACCTTCAAAC+TGG | - | chr8.3:55804757-55804776 | None:intergenic | 40.0% | |
| GAGATTACTTTGTTCACTCG+AGG | - | chr8.3:55804629-55804648 | None:intergenic | 40.0% | |
| GCAGAAGCTCAAACAGAAAA+AGG | + | chr8.3:55804901-55804920 | MS.gene78914:CDS | 40.0% | |
| GTAATCTCACTTCTGGATCT+TGG | + | chr8.3:55804641-55804660 | MS.gene78914:CDS | 40.0% | |
| GTAATTATGATCCTGCTTCC+AGG | - | chr8.3:55805001-55805020 | None:intergenic | 40.0% | |
| TAGGGATATATGGAATGGGT+GGG | + | chr8.3:55804684-55804703 | MS.gene78914:CDS | 40.0% | |
| TCAATCAGTGACCAGTTTGA+AGG | + | chr8.3:55804743-55804762 | MS.gene78914:CDS | 40.0% | |
| TGACAAATTGAAGCAGCTAC+AGG | + | chr8.3:55804946-55804965 | MS.gene78914:CDS | 40.0% | |
| TTAGGGATATATGGAATGGG+TGG | + | chr8.3:55804683-55804702 | MS.gene78914:CDS | 40.0% | |
| TTCGTTGGAGGAAGAAGAAA+AGG | + | chr8.3:55805324-55805343 | MS.gene78914:CDS | 40.0% | |
| TTTCTTCAATGGACGTGAAC+TGG | + | chr8.3:55805369-55805388 | MS.gene78914:CDS | 40.0% | |
| ! | AATGGGAAAGTGCATTGGAT+CGG | + | chr8.3:55805248-55805267 | MS.gene78914:CDS | 40.0% |
| ! | CCAGATAAGCTTTGATTCGT+TGG | + | chr8.3:55805309-55805328 | MS.gene78914:CDS | 40.0% |
| ! | CTTGTCGTTAGGCAATTTTC+AGG | - | chr8.3:55806069-55806088 | None:intergenic | 40.0% |
| ! | GATAAGCTTTGATTCGTTGG+AGG | + | chr8.3:55805312-55805331 | MS.gene78914:CDS | 40.0% |
| ! | GGTAAAGAAGTATGTTGGGA+TGG | + | chr8.3:55805871-55805890 | MS.gene78914:CDS | 40.0% |
| !! | CATGTACTCACTTTTACCTC+TGG | + | chr8.3:55805169-55805188 | MS.gene78914:CDS | 40.0% |
| !! | GTTTAAGAGTGTTGGAATGG+TGG | + | chr8.3:55805980-55805999 | MS.gene78914:CDS | 40.0% |
| !! | TTAAGAGTGTTGGAATGGTG+GGG | + | chr8.3:55805982-55806001 | MS.gene78914:CDS | 40.0% |
| AAGACGTGGAAGACATACTG+GGG | + | chr8.3:55805392-55805411 | MS.gene78914:CDS | 45.0% | |
| AAGCAGCTACAGGTTATTGC+AGG | + | chr8.3:55804956-55804975 | MS.gene78914:CDS | 45.0% | |
| CATGACCTGGTTGAAGACAT+GGG | + | chr8.3:55805502-55805521 | MS.gene78914:CDS | 45.0% | |
| CCTACTGCTCTCAAAGCTAA+TGG | - | chr8.3:55805199-55805218 | None:intergenic | 45.0% | |
| CTGGATTTCCCCAAAGATGA+CGG | + | chr8.3:55805850-55805869 | MS.gene78914:CDS | 45.0% | |
| CTTTACCCATGTCTTCAACC+AGG | - | chr8.3:55805510-55805529 | None:intergenic | 45.0% | |
| GAAGACGTGGAAGACATACT+GGG | + | chr8.3:55805391-55805410 | MS.gene78914:CDS | 45.0% | |
| GTTACTGCTGATCAAGCTGT+TGG | + | chr8.3:55804596-55804615 | MS.gene78914:CDS | 45.0% | |
| TAGTCTCTTGGAGATGCTCT+AGG | - | chr8.3:55804814-55804833 | None:intergenic | 45.0% | |
| TCTTGTGACATTGCATGACC+TGG | + | chr8.3:55805489-55805508 | MS.gene78914:CDS | 45.0% | |
| TTATTGCAGGAGGATCCGAT+TGG | + | chr8.3:55804969-55804988 | MS.gene78914:CDS | 45.0% | |
| ! | TCATCTGGTAATGACGGTGA+AGG | - | chr8.3:55806012-55806031 | None:intergenic | 45.0% |
| !! | CCATTAGCTTTGAGAGCAGT+AGG | + | chr8.3:55805196-55805215 | MS.gene78914:CDS | 45.0% |
| AGACGTGGAAGACATACTGG+GGG | + | chr8.3:55805393-55805412 | MS.gene78914:CDS | 50.0% | |
| ATACTGGGGGCTCATTATGG+TGG | + | chr8.3:55805406-55805425 | MS.gene78914:CDS | 50.0% | |
| CAAAGCTAATGGAAGCCCAG+AGG | - | chr8.3:55805188-55805207 | None:intergenic | 50.0% | |
| CAGCTACAGGTTATTGCAGG+AGG | + | chr8.3:55804959-55804978 | MS.gene78914:CDS | 50.0% | |
| GACATACTGGGGGCTCATTA+TGG | + | chr8.3:55805403-55805422 | MS.gene78914:CDS | 50.0% | |
| GCATGACCTGGTTGAAGACA+TGG | + | chr8.3:55805501-55805520 | MS.gene78914:CDS | 50.0% | |
| GCTCACGTGGTGATTCTTGT+CGG | - | chr8.3:55805540-55805559 | None:intergenic | 50.0% | |
| GCTTCCAGGACCAAACCAAT+CGG | - | chr8.3:55804987-55805006 | None:intergenic | 50.0% | |
| GGAAGACGTGGAAGACATAC+TGG | + | chr8.3:55805390-55805409 | MS.gene78914:CDS | 50.0% | |
| GTGAGCCAAGAGAACGTAGT+AGG | + | chr8.3:55805554-55805573 | MS.gene78914:CDS | 50.0% | |
| GTGTGGGGCCTCTGTTAAAA+CGG | - | chr8.3:55805948-55805967 | None:intergenic | 50.0% | |
| !! | ATTGGTTTGGTCCTGGAAGC+AGG | + | chr8.3:55804987-55805006 | MS.gene78914:CDS | 50.0% |
| CTACGTTCTCTTGGCTCACG+TGG | - | chr8.3:55805553-55805572 | None:intergenic | 55.0% | |
| GCAGTAGGCTCCTCCTTGTT+TGG | + | chr8.3:55805211-55805230 | MS.gene78914:CDS | 55.0% | |
| TGGACGTGAACTGGAAGACG+TGG | + | chr8.3:55805378-55805397 | MS.gene78914:CDS | 55.0% | |
| ! | GCAGGAGGATCCGATTGGTT+TGG | + | chr8.3:55804974-55804993 | MS.gene78914:CDS | 55.0% |
| !! | GGATCCGATTGGTTTGGTCC+TGG | + | chr8.3:55804980-55804999 | MS.gene78914:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 55804541 | 55806101 | 55804541 | ID=MS.gene78914 |
| chr8.3 | mRNA | 55804541 | 55806101 | 55804541 | ID=MS.gene78914.t1;Parent=MS.gene78914 |
| chr8.3 | exon | 55804541 | 55805621 | 55804541 | ID=MS.gene78914.t1.exon1;Parent=MS.gene78914.t1 |
| chr8.3 | CDS | 55804541 | 55805621 | 55804541 | ID=cds.MS.gene78914.t1;Parent=MS.gene78914.t1 |
| chr8.3 | exon | 55805823 | 55806101 | 55805823 | ID=MS.gene78914.t1.exon2;Parent=MS.gene78914.t1 |
| chr8.3 | CDS | 55805823 | 55806101 | 55805823 | ID=cds.MS.gene78914.t1;Parent=MS.gene78914.t1 |
| Gene Sequence |
| Protein sequence |
