AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79004

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79004.t1 MTR_5g036410 97.283 368 10 0 1 368 1 368 0.0 740
MS.gene79004.t1 MTR_8g062770 63.068 352 119 4 12 355 7 355 3.45e-157 446
MS.gene79004.t1 MTR_5g012680 46.821 346 154 8 33 368 29 354 1.87e-100 301
MS.gene79004.t1 MTR_8g005900 45.603 307 153 5 54 355 39 336 3.39e-89 272
MS.gene79004.t1 MTR_5g036080 43.007 286 136 10 49 328 57 321 1.84e-62 203
MS.gene79004.t1 MTR_6g008480 35.452 299 156 5 53 325 42 329 7.72e-57 189
MS.gene79004.t1 MTR_5g036087 35.783 313 173 9 62 368 58 348 1.10e-45 160
MS.gene79004.t1 MTR_5g036083 36.655 281 135 7 66 344 44 283 1.31e-44 156
MS.gene79004.t1 MTR_5g036093 34.528 307 166 9 68 368 35 312 9.75e-42 149
MS.gene79004.t1 MTR_5g036290 33.871 310 172 9 64 368 87 368 9.27e-39 142
MS.gene79004.t1 MTR_5g036270 33.871 310 159 11 66 330 5 313 2.62e-38 140
MS.gene79004.t1 MTR_5g036360 34.066 273 151 7 59 327 74 321 2.11e-36 135
MS.gene79004.t1 MTR_5g036310 29.841 315 145 12 59 368 66 309 1.33e-23 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79004.t1 AT1G70170 54.706 340 145 4 6 339 1 337 3.65e-132 383
MS.gene79004.t1 AT1G24140 51.117 358 162 5 7 353 3 358 7.69e-127 370
MS.gene79004.t1 AT1G59970 51.622 339 153 4 12 347 5 335 2.91e-117 344
MS.gene79004.t1 AT4G16640 45.652 322 154 6 49 366 52 356 6.27e-88 270
MS.gene79004.t1 AT2G45040 48.529 272 115 6 67 332 50 302 1.32e-81 253

Find 88 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCATCAGATATTAAATT+AGG 0.157039 5.2:+26804989 MS.gene79004:CDS
CATGAAATAGGTCATTTATT+AGG 0.161352 5.2:+26805193 MS.gene79004:CDS
GAAGGGATTCAAATGCTTTA+TGG 0.163456 5.2:+26805304 MS.gene79004:CDS
GTAGTTGTCCCTGTAAAATT+AGG 0.201015 5.2:-26805334 None:intergenic
TCCGGCCAGCGTGGCTGGCC+GGG 0.262954 5.2:-26804833 None:intergenic
AAATTTGACGGTGGCGCGTT+GGG 0.272425 5.2:-26804590 None:intergenic
ATGAAATAGGTCATTTATTA+GGG 0.288245 5.2:+26805194 MS.gene79004:CDS
TCTTTGTTGTTTCTTGGATT+TGG 0.304297 5.2:+26805418 MS.gene79004:CDS
GTTCATCAGATATTAAATTA+GGG 0.315071 5.2:+26804990 MS.gene79004:CDS
AAGGGATTCAAATGCTTTAT+GGG 0.316052 5.2:+26805305 MS.gene79004:CDS
TTCCCTCCGGCCAGCGTGGC+TGG 0.317572 5.2:-26804838 None:intergenic
CTCCGGCCAGCGTGGCTGGC+CGG 0.323920 5.2:-26804834 None:intergenic
AGGGATAGAGAATCTAGTTT+TGG 0.345074 5.2:+26805367 MS.gene79004:CDS
ATAGGTCATTTATTAGGGTT+AGG 0.349255 5.2:+26805199 MS.gene79004:CDS
CCCCGGCCAGCCACGCTGGC+CGG 0.363367 5.2:+26804832 MS.gene79004:CDS
ATTTAGATAAAGCAGAAGAT+TGG 0.364719 5.2:+26805104 MS.gene79004:CDS
CCTCGACGACGCAACGAAAC+AGG 0.364913 5.2:+26804898 MS.gene79004:CDS
GGTTCGGACGGCGGATTCTA+AGG 0.384424 5.2:-26804633 None:intergenic
TCTTCCCCGGCCAGCCACGC+TGG 0.384836 5.2:+26804828 MS.gene79004:CDS
TGTGATGCTAATTAGTGTTA+TGG 0.388665 5.2:-26804390 None:intergenic
CAGGATCGAAAGCGTAGGTT+AGG 0.389916 5.2:-26804868 None:intergenic
TCTGTTGTGGTTCATGAAAT+AGG 0.392934 5.2:+26805181 MS.gene79004:CDS
TAGTTGTCCCTGTAAAATTA+GGG 0.403688 5.2:-26805333 None:intergenic
TCGCAAACGCGTTTAATCAA+TGG 0.408237 5.2:+26804924 MS.gene79004:CDS
CCGGCCAGCGTGGCTGGCCG+GGG 0.411103 5.2:-26804832 None:intergenic
CTAACCTACGCTTTCGATCC+TGG 0.415620 5.2:+26804869 MS.gene79004:CDS
GAAGCATTTGACGGAGTCCT+TGG 0.426382 5.2:+26805040 MS.gene79004:CDS
TTGTACCCATCCCACGCGCC+TGG 0.434161 5.2:-26804485 None:intergenic
TGTTGAGGTTGAAATTCTTT+TGG 0.436136 5.2:-26804658 None:intergenic
TTTAGATAAAGCAGAAGATT+GGG 0.451565 5.2:+26805105 MS.gene79004:CDS
GCAGAAGATTGGGTAGTTAA+CGG 0.455900 5.2:+26805115 MS.gene79004:CDS
TTCCATGCTGGCATTGAAGT+TGG 0.457438 5.2:-26804446 None:intergenic
TAGGTCATTTATTAGGGTTA+GGG 0.476335 5.2:+26805200 MS.gene79004:CDS
GCTGGCATTGAAGTTGGATC+AGG 0.477180 5.2:-26804440 None:intergenic
CGGCCAGCCACGCTGGCCGG+AGG 0.478549 5.2:+26804835 MS.gene79004:CDS
AACTTCACCGGCTGCAGCCG+CGG 0.481967 5.2:+26804509 MS.gene79004:CDS
CACCACCAGGCGCGTGGGAT+GGG 0.482425 5.2:+26804480 MS.gene79004:CDS
GAAATTTGACGGTGGCGCGT+TGG 0.484503 5.2:-26804591 None:intergenic
AAGCATTTGACGGAGTCCTT+GGG 0.485684 5.2:+26805041 MS.gene79004:CDS
GGCCAGCCACGCTGGCCGGA+GGG 0.491463 5.2:+26804836 MS.gene79004:CDS
TTCGTTCTTGAACTTATCGT+AGG 0.494239 5.2:-26805253 None:intergenic
GTACATAATAGCCTCTTCAA+TGG 0.498583 5.2:-26805230 None:intergenic
AGGATCGAAAGCGTAGGTTA+GGG 0.500894 5.2:-26804867 None:intergenic
GTTAGGGTTTGTGTTCCCTC+CGG 0.512103 5.2:-26804851 None:intergenic
GCACCACCAGGCGCGTGGGA+TGG 0.518271 5.2:+26804479 MS.gene79004:CDS
TCGTTCTTGAACTTATCGTA+GGG 0.525939 5.2:-26805252 None:intergenic
GCACACTATTCATTCTTCCC+CGG 0.533542 5.2:+26804815 MS.gene79004:CDS
GGACAACTACTGCTACTTCG+AGG 0.534224 5.2:+26805347 MS.gene79004:CDS
CCTGTTTCGTTGCGTCGTCG+AGG 0.534782 5.2:-26804898 None:intergenic
AAGTCATCGGTGAAATTTGA+CGG 0.541849 5.2:-26804602 None:intergenic
CTTGAGAGTGATGATATTGA+AGG 0.545826 5.2:+26805286 MS.gene79004:CDS
CGTTGCATCGTCGAGTTCAC+CGG 0.549154 5.2:-26804684 None:intergenic
AATTTGACGGTGGCGCGTTG+GGG 0.555953 5.2:-26804589 None:intergenic
CCACGCGCCTGGTGGTGCGT+TGG 0.556501 5.2:-26804474 None:intergenic
TGCAACAGTGTGGAAGTTTG+TGG 0.558255 5.2:-26804795 None:intergenic
AGATTCTAAATCAACAGCGT+TGG 0.559895 5.2:-26805161 None:intergenic
AGGGCATTCTTCCATTGAAG+AGG 0.560714 5.2:+26805219 MS.gene79004:CDS
CGAGTTCACCGGTGATGTTG+AGG 0.562539 5.2:-26804673 None:intergenic
AAATGTAATCTTCCGTCAGT+TGG 0.563519 5.2:-26805085 None:intergenic
CCAACGCACCACCAGGCGCG+TGG 0.566983 5.2:+26804474 MS.gene79004:CDS
AATTCTACCAACGCACCACC+AGG 0.571636 5.2:+26804467 MS.gene79004:CDS
AATTTCAACCTCAACATCAC+CGG 0.584106 5.2:+26804665 MS.gene79004:CDS
TTGAGAGTGATGATATTGAA+GGG 0.584160 5.2:+26805287 MS.gene79004:CDS
GGTGACGGAGAAGCATTTGA+CGG 0.584989 5.2:+26805031 MS.gene79004:CDS
TACCCATCCCACGCGCCTGG+TGG 0.585085 5.2:-26804482 None:intergenic
GGTAGTTAACGGAGATGTAA+CGG 0.586362 5.2:+26805126 MS.gene79004:CDS
GACAACTACTGCTACTTCGA+GGG 0.587368 5.2:+26805348 MS.gene79004:CDS
TATAGTGGGGACCATGGTGA+CGG 0.588206 5.2:+26805016 MS.gene79004:CDS
CTGGCATTGAAGTTGGATCA+GGG 0.593722 5.2:-26804439 None:intergenic
TAAGGCCTCATCGAAGTCAT+CGG 0.596070 5.2:-26804615 None:intergenic
ATATGTGATAACAATAACGT+TGG 0.599954 5.2:-26804364 None:intergenic
CGTTGGGGATGTAGCCGAAG+TGG 0.602278 5.2:-26804574 None:intergenic
TGTTGATTTAGAATCTGTTG+TGG 0.605486 5.2:+26805168 MS.gene79004:CDS
TGTGTTCCCTCCGGCCAGCG+TGG 0.612378 5.2:-26804842 None:intergenic
CAACGCACCACCAGGCGCGT+GGG 0.616925 5.2:+26804475 MS.gene79004:CDS
AGCCGCGGCAAAACTTATGA+CGG 0.625110 5.2:+26804524 MS.gene79004:CDS
ATCCAACTTCAATGCCAGCA+TGG 0.626594 5.2:+26804444 MS.gene79004:CDS
GGTACAACCTCCATGAACTC+CGG 0.628579 5.2:+26804755 MS.gene79004:CDS
TACATCGTCAAGCCACGTTG+TGG 0.633991 5.2:+26804713 MS.gene79004:CDS
AAGCGTGTGCTAATGTCCCA+AGG 0.645260 5.2:-26805057 None:intergenic
CAAATGCTTCTCCGTCACCA+TGG 0.647782 5.2:-26805027 None:intergenic
TTCGCCAGGATCGAAAGCGT+AGG 0.667843 5.2:-26804873 None:intergenic
GCGTTGGTAGAATTCCATGC+TGG 0.672914 5.2:-26804458 None:intergenic
GGTGTAGCTGATATCATCAA+CGG 0.676861 5.2:+26804734 MS.gene79004:CDS
ATGAATAGTGTGCAACAGTG+TGG 0.693351 5.2:-26804805 None:intergenic
TTTCACCGATGACTTCGATG+AGG 0.708916 5.2:+26804610 MS.gene79004:CDS
TCATCGGTGAAATTTGACGG+TGG 0.735772 5.2:-26804599 None:intergenic
ATATCAGCTACACCACAACG+TGG 0.791932 5.2:-26804725 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTCATCAGATATTAAATT+AGG + chr5.2:26804989-26805008 MS.gene79004:CDS 20.0%
!! ATGAAATAGGTCATTTATTA+GGG + chr5.2:26805194-26805213 MS.gene79004:CDS 20.0%
!! GTTCATCAGATATTAAATTA+GGG + chr5.2:26804990-26805009 MS.gene79004:CDS 20.0%
!!! ATTAAATTAGGGTTTTATAG+TGG + chr5.2:26805001-26805020 MS.gene79004:CDS 20.0%
!!! TTAAATTAGGGTTTTATAGT+GGG + chr5.2:26805002-26805021 MS.gene79004:CDS 20.0%
! ATATGTGATAACAATAACGT+TGG - chr5.2:26804367-26804386 None:intergenic 25.0%
! ATTTAGATAAAGCAGAAGAT+TGG + chr5.2:26805104-26805123 MS.gene79004:CDS 25.0%
! CATGAAATAGGTCATTTATT+AGG + chr5.2:26805193-26805212 MS.gene79004:CDS 25.0%
! TTTAGATAAAGCAGAAGATT+GGG + chr5.2:26805105-26805124 MS.gene79004:CDS 25.0%
!!! TAAATTAGGGTTTTATAGTG+GGG + chr5.2:26805003-26805022 MS.gene79004:CDS 25.0%
!!! TTTTTGTCTTTGTTGTTTCT+TGG + chr5.2:26805412-26805431 MS.gene79004:CDS 25.0%
AAAAACTACTTCAACCACTT+CGG + chr5.2:26804560-26804579 MS.gene79004:CDS 30.0%
AAGGGATTCAAATGCTTTAT+GGG + chr5.2:26805305-26805324 MS.gene79004:CDS 30.0%
ATAGGTCATTTATTAGGGTT+AGG + chr5.2:26805199-26805218 MS.gene79004:CDS 30.0%
TAGGTCATTTATTAGGGTTA+GGG + chr5.2:26805200-26805219 MS.gene79004:CDS 30.0%
TAGTTGTCCCTGTAAAATTA+GGG - chr5.2:26805336-26805355 None:intergenic 30.0%
TGTGATGCTAATTAGTGTTA+TGG - chr5.2:26804393-26804412 None:intergenic 30.0%
TTGAGAGTGATGATATTGAA+GGG + chr5.2:26805287-26805306 MS.gene79004:CDS 30.0%
! TGAAATTCTTTTGGTAGGTT+CGG - chr5.2:26804652-26804671 None:intergenic 30.0%
! TGTTGAGGTTGAAATTCTTT+TGG - chr5.2:26804661-26804680 None:intergenic 30.0%
!! TCTTTGTTGTTTCTTGGATT+TGG + chr5.2:26805418-26805437 MS.gene79004:CDS 30.0%
!! TGTTGATTTAGAATCTGTTG+TGG + chr5.2:26805168-26805187 MS.gene79004:CDS 30.0%
AAATGTAATCTTCCGTCAGT+TGG - chr5.2:26805088-26805107 None:intergenic 35.0%
AAGTCATCGGTGAAATTTGA+CGG - chr5.2:26804605-26804624 None:intergenic 35.0%
AATTTCAACCTCAACATCAC+CGG + chr5.2:26804665-26804684 MS.gene79004:CDS 35.0%
AGATTCTAAATCAACAGCGT+TGG - chr5.2:26805164-26805183 None:intergenic 35.0%
CTTGAGAGTGATGATATTGA+AGG + chr5.2:26805286-26805305 MS.gene79004:CDS 35.0%
GAAGGGATTCAAATGCTTTA+TGG + chr5.2:26805304-26805323 MS.gene79004:CDS 35.0%
GTACATAATAGCCTCTTCAA+TGG - chr5.2:26805233-26805252 None:intergenic 35.0%
GTAGTTGTCCCTGTAAAATT+AGG - chr5.2:26805337-26805356 None:intergenic 35.0%
TCGTTCTTGAACTTATCGTA+GGG - chr5.2:26805255-26805274 None:intergenic 35.0%
TCTGTTGTGGTTCATGAAAT+AGG + chr5.2:26805181-26805200 MS.gene79004:CDS 35.0%
TTCGTTCTTGAACTTATCGT+AGG - chr5.2:26805256-26805275 None:intergenic 35.0%
! GAGGTTGAAATTCTTTTGGT+AGG - chr5.2:26804657-26804676 None:intergenic 35.0%
! GGTCTAACCCTAATTTTACA+GGG + chr5.2:26805326-26805345 MS.gene79004:CDS 35.0%
!! AGGGATAGAGAATCTAGTTT+TGG + chr5.2:26805367-26805386 MS.gene79004:CDS 35.0%
!!! GATAGAGAATCTAGTTTTGG+TGG + chr5.2:26805370-26805389 MS.gene79004:CDS 35.0%
ATGAATAGTGTGCAACAGTG+TGG - chr5.2:26804808-26804827 None:intergenic 40.0%
GATGGGTACAAAAACTTCAC+CGG + chr5.2:26804497-26804516 MS.gene79004:CDS 40.0%
GCAGAAGATTGGGTAGTTAA+CGG + chr5.2:26805115-26805134 MS.gene79004:CDS 40.0%
GGTAGTTAACGGAGATGTAA+CGG + chr5.2:26805126-26805145 MS.gene79004:CDS 40.0%
GGTGTAGCTGATATCATCAA+CGG + chr5.2:26804734-26804753 MS.gene79004:CDS 40.0%
TCGCAAACGCGTTTAATCAA+TGG + chr5.2:26804924-26804943 MS.gene79004:CDS 40.0%
! ATTCTTTTGGTAGGTTCGGA+CGG - chr5.2:26804648-26804667 None:intergenic 40.0%
! GGAGCTAGAGTTGAATTTTC+CGG - chr5.2:26804777-26804796 None:intergenic 40.0%
! GGGTCTAACCCTAATTTTAC+AGG + chr5.2:26805325-26805344 MS.gene79004:CDS 40.0%
! GTTGAATTTTCCGGAGTTCA+TGG - chr5.2:26804768-26804787 None:intergenic 40.0%
!!! CTAGTTTTGGTGGAAGACAT+GGG + chr5.2:26805380-26805399 MS.gene79004:CDS 40.0%
!!! TAGTTTTGGTGGAAGACATG+GGG + chr5.2:26805381-26805400 MS.gene79004:CDS 40.0%
!!! TCTAGTTTTGGTGGAAGACA+TGG + chr5.2:26805379-26805398 MS.gene79004:CDS 40.0%
AAGCATTTGACGGAGTCCTT+GGG + chr5.2:26805041-26805060 MS.gene79004:CDS 45.0%
ATATCAGCTACACCACAACG+TGG - chr5.2:26804728-26804747 None:intergenic 45.0%
ATCCAACTTCAATGCCAGCA+TGG + chr5.2:26804444-26804463 MS.gene79004:CDS 45.0%
GCACACTATTCATTCTTCCC+CGG + chr5.2:26804815-26804834 MS.gene79004:CDS 45.0%
TAAGGCCTCATCGAAGTCAT+CGG - chr5.2:26804618-26804637 None:intergenic 45.0%
TCATCGGTGAAATTTGACGG+TGG - chr5.2:26804602-26804621 None:intergenic 45.0%
TGCAACAGTGTGGAAGTTTG+TGG - chr5.2:26804798-26804817 None:intergenic 45.0%
TTTCACCGATGACTTCGATG+AGG + chr5.2:26804610-26804629 MS.gene79004:CDS 45.0%
! AACCGTCATAAGTTTTGCCG+CGG - chr5.2:26804529-26804548 None:intergenic 45.0%
! AGGATCGAAAGCGTAGGTTA+GGG - chr5.2:26804870-26804889 None:intergenic 45.0%
! AGGGCATTCTTCCATTGAAG+AGG + chr5.2:26805219-26805238 MS.gene79004:CDS 45.0%
! CTGGCATTGAAGTTGGATCA+GGG - chr5.2:26804442-26804461 None:intergenic 45.0%
! GAATTTTCCGGAGTTCATGG+AGG - chr5.2:26804765-26804784 None:intergenic 45.0%
! GACAACTACTGCTACTTCGA+GGG + chr5.2:26805348-26805367 MS.gene79004:CDS 45.0%
! TTCCATGCTGGCATTGAAGT+TGG - chr5.2:26804449-26804468 None:intergenic 45.0%
!!! CACGCTTTTTCACCAACTGA+CGG + chr5.2:26805073-26805092 MS.gene79004:CDS 45.0%
AAATTTGACGGTGGCGCGTT+GGG - chr5.2:26804593-26804612 None:intergenic 50.0%
AAGCGTGTGCTAATGTCCCA+AGG - chr5.2:26805060-26805079 None:intergenic 50.0%
AATTCTACCAACGCACCACC+AGG + chr5.2:26804467-26804486 MS.gene79004:CDS 50.0%
AGCCGCGGCAAAACTTATGA+CGG + chr5.2:26804524-26804543 MS.gene79004:CDS 50.0%
CAAATGCTTCTCCGTCACCA+TGG - chr5.2:26805030-26805049 None:intergenic 50.0%
CTAACCTACGCTTTCGATCC+TGG + chr5.2:26804869-26804888 MS.gene79004:CDS 50.0%
GGTACAACCTCCATGAACTC+CGG + chr5.2:26804755-26804774 MS.gene79004:CDS 50.0%
GTTAGGGTTTGTGTTCCCTC+CGG - chr5.2:26804854-26804873 None:intergenic 50.0%
TACATCGTCAAGCCACGTTG+TGG + chr5.2:26804713-26804732 MS.gene79004:CDS 50.0%
! CAGGATCGAAAGCGTAGGTT+AGG - chr5.2:26804871-26804890 None:intergenic 50.0%
! GAAGCATTTGACGGAGTCCT+TGG + chr5.2:26805040-26805059 MS.gene79004:CDS 50.0%
! GCGTTGGTAGAATTCCATGC+TGG - chr5.2:26804461-26804480 None:intergenic 50.0%
! GCTGGCATTGAAGTTGGATC+AGG - chr5.2:26804443-26804462 None:intergenic 50.0%
! GGACAACTACTGCTACTTCG+AGG + chr5.2:26805347-26805366 MS.gene79004:CDS 50.0%
! TATAGTGGGGACCATGGTGA+CGG + chr5.2:26805016-26805035 MS.gene79004:CDS 50.0%
!! GGGTTTTATAGTGGGGACCA+TGG + chr5.2:26805010-26805029 MS.gene79004:CDS 50.0%
!! GGTGACGGAGAAGCATTTGA+CGG + chr5.2:26805031-26805050 MS.gene79004:CDS 50.0%
AATTTGACGGTGGCGCGTTG+GGG - chr5.2:26804592-26804611 None:intergenic 55.0%
CGAGTTCACCGGTGATGTTG+AGG - chr5.2:26804676-26804695 None:intergenic 55.0%
CGTTGCATCGTCGAGTTCAC+CGG - chr5.2:26804687-26804706 None:intergenic 55.0%
GAAATTTGACGGTGGCGCGT+TGG - chr5.2:26804594-26804613 None:intergenic 55.0%
! CTTTTGGTAGGTTCGGACGG+CGG - chr5.2:26804645-26804664 None:intergenic 55.0%
! TTCGCCAGGATCGAAAGCGT+AGG - chr5.2:26804876-26804895 None:intergenic 55.0%
CCTCGACGACGCAACGAAAC+AGG + chr5.2:26804898-26804917 MS.gene79004:CDS 60.0%
CCTGTTTCGTTGCGTCGTCG+AGG - chr5.2:26804901-26804920 None:intergenic 60.0%
CGTTGGGGATGTAGCCGAAG+TGG - chr5.2:26804577-26804596 None:intergenic 60.0%
! GGTTCGGACGGCGGATTCTA+AGG - chr5.2:26804636-26804655 None:intergenic 60.0%
TTGTACCCATCCCACGCGCC+TGG - chr5.2:26804488-26804507 None:intergenic 65.0%
! AACTTCACCGGCTGCAGCCG+CGG + chr5.2:26804509-26804528 MS.gene79004:CDS 65.0%
! AGTTTTGCCGCGGCTGCAGC+CGG - chr5.2:26804519-26804538 None:intergenic 65.0%
! GCGTCGTCGAGGTTTTCGCC+AGG - chr5.2:26804890-26804909 None:intergenic 65.0%
CAACGCACCACCAGGCGCGT+GGG + chr5.2:26804475-26804494 MS.gene79004:CDS 70.0%
CACCACCAGGCGCGTGGGAT+GGG + chr5.2:26804480-26804499 MS.gene79004:CDS 70.0%
TACCCATCCCACGCGCCTGG+TGG - chr5.2:26804485-26804504 None:intergenic 70.0%
TGTGTTCCCTCCGGCCAGCG+TGG - chr5.2:26804845-26804864 None:intergenic 70.0%
CCAACGCACCACCAGGCGCG+TGG + chr5.2:26804474-26804493 MS.gene79004:CDS 75.0%
GCACCACCAGGCGCGTGGGA+TGG + chr5.2:26804479-26804498 MS.gene79004:CDS 75.0%
TCTTCCCCGGCCAGCCACGC+TGG + chr5.2:26804828-26804847 MS.gene79004:CDS 75.0%
TTCCCTCCGGCCAGCGTGGC+TGG - chr5.2:26804841-26804860 None:intergenic 75.0%
! CCACGCGCCTGGTGGTGCGT+TGG - chr5.2:26804477-26804496 None:intergenic 75.0%
! CTCCGGCCAGCGTGGCTGGC+CGG - chr5.2:26804837-26804856 None:intergenic 80.0%
! GGCCAGCCACGCTGGCCGGA+GGG + chr5.2:26804836-26804855 MS.gene79004:CDS 80.0%
!! TCCGGCCAGCGTGGCTGGCC+GGG - chr5.2:26804836-26804855 None:intergenic 80.0%
! CCCCGGCCAGCCACGCTGGC+CGG + chr5.2:26804832-26804851 MS.gene79004:CDS 85.0%
! CGGCCAGCCACGCTGGCCGG+AGG + chr5.2:26804835-26804854 MS.gene79004:CDS 85.0%
!! CCGGCCAGCGTGGCTGGCCG+GGG - chr5.2:26804835-26804854 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 26804350 26805456 26804350 ID=MS.gene79004
chr5.2 mRNA 26804350 26805456 26804350 ID=MS.gene79004.t1;Parent=MS.gene79004
chr5.2 exon 26804350 26805456 26804350 ID=MS.gene79004.t1.exon1;Parent=MS.gene79004.t1
chr5.2 CDS 26804350 26805456 26804350 ID=cds.MS.gene79004.t1;Parent=MS.gene79004.t1
Gene Sequence

>MS.gene79004

ATGATTACTCAAATCCAACGTTATTGTTATCACATATTCTCCATAACACTAATTAGCATCACATTAACTTCAGTTTCAGCTCGTTTCTTCCCTGATCCAACTTCAATGCCAGCATGGAATTCTACCAACGCACCACCAGGCGCGTGGGATGGGTACAAAAACTTCACCGGCTGCAGCCGCGGCAAAACTTATGACGGTTTGTCAAAACTCAAAAACTACTTCAACCACTTCGGCTACATCCCCAACGCGCCACCGTCAAATTTCACCGATGACTTCGATGAGGCCTTAGAATCCGCCGTCCGAACCTACCAAAAGAATTTCAACCTCAACATCACCGGTGAACTCGACGATGCAACGATGAATTACATCGTCAAGCCACGTTGTGGTGTAGCTGATATCATCAACGGTACAACCTCCATGAACTCCGGAAAATTCAACTCTAGCTCCACAAACTTCCACACTGTTGCACACTATTCATTCTTCCCCGGCCAGCCACGCTGGCCGGAGGGAACACAAACCCTAACCTACGCTTTCGATCCTGGCGAAAACCTCGACGACGCAACGAAACAGGTTTTCGCAAACGCGTTTAATCAATGGTCAAAAGTAACAACAATAACATTCACAGAAGCAACGTCATATAGTTCATCAGATATTAAATTAGGGTTTTATAGTGGGGACCATGGTGACGGAGAAGCATTTGACGGAGTCCTTGGGACATTAGCACACGCTTTTTCACCAACTGACGGAAGATTACATTTAGATAAAGCAGAAGATTGGGTAGTTAACGGAGATGTAACGGAATCATCTTTATCCAACGCTGTTGATTTAGAATCTGTTGTGGTTCATGAAATAGGTCATTTATTAGGGTTAGGGCATTCTTCCATTGAAGAGGCTATTATGTACCCTACGATAAGTTCAAGAACGAAGAAAGTTGAGCTTGAGAGTGATGATATTGAAGGGATTCAAATGCTTTATGGGTCTAACCCTAATTTTACAGGGACAACTACTGCTACTTCGAGGGATAGAGAATCTAGTTTTGGTGGAAGACATGGGGTGTCGTTGTTTTTGTCTTTGTTGTTTCTTGGATTTGGTTTTTTGAGCTTGTAG
Protein sequence

>MS.gene79004.t1

MITQIQRYCYHIFSITLISITLTSVSARFFPDPTSMPAWNSTNAPPGAWDGYKNFTGCSRGKTYDGLSKLKNYFNHFGYIPNAPPSNFTDDFDEALESAVRTYQKNFNLNITGELDDATMNYIVKPRCGVADIINGTTSMNSGKFNSSSTNFHTVAHYSFFPGQPRWPEGTQTLTYAFDPGENLDDATKQVFANAFNQWSKVTTITFTEATSYSSSDIKLGFYSGDHGDGEAFDGVLGTLAHAFSPTDGRLHLDKAEDWVVNGDVTESSLSNAVDLESVVVHEIGHLLGLGHSSIEEAIMYPTISSRTKKVELESDDIEGIQMLYGSNPNFTGTTTATSRDRESSFGGRHGVSLFLSLLFLGFGFLSL