Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79006.t1 | XP_003613423.1 | 94.5 | 237 | 12 | 1 | 1 | 236 | 1 | 237 | 2.40E-86 | 328.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79006.t1 | Q9ZWS9 | 72.1 | 147 | 36 | 2 | 11 | 157 | 28 | 169 | 6.8e-53 | 208.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79006.t1 | G7K5L8 | 94.5 | 237 | 12 | 1 | 1 | 236 | 1 | 237 | 1.8e-86 | 328.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene79006.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene79006 | MS.gene044333 | PPI |
MS.gene79006 | MS.gene25697 | PPI |
MS.gene79006 | MS.gene70470 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79006.t1 | MTR_5g036480 | 93.671 | 237 | 14 | 1 | 1 | 236 | 1 | 237 | 6.90e-139 | 389 |
MS.gene79006.t1 | MTR_1g049100 | 67.105 | 228 | 44 | 3 | 9 | 236 | 1 | 197 | 6.14e-86 | 253 |
MS.gene79006.t1 | MTR_4g106590 | 71.528 | 144 | 36 | 2 | 15 | 157 | 25 | 164 | 7.69e-64 | 198 |
MS.gene79006.t1 | MTR_7g490310 | 59.236 | 157 | 59 | 2 | 15 | 166 | 8 | 164 | 2.66e-61 | 192 |
MS.gene79006.t1 | MTR_3g078613 | 67.883 | 137 | 40 | 1 | 15 | 151 | 22 | 154 | 1.83e-60 | 189 |
MS.gene79006.t1 | MTR_3g078613 | 67.391 | 138 | 40 | 2 | 15 | 151 | 22 | 155 | 1.17e-58 | 184 |
MS.gene79006.t1 | MTR_8g038620 | 58.108 | 148 | 56 | 2 | 15 | 157 | 8 | 154 | 1.28e-53 | 171 |
MS.gene79006.t1 | MTR_3g093860 | 60.000 | 130 | 44 | 3 | 17 | 143 | 19 | 143 | 1.65e-49 | 159 |
MS.gene79006.t1 | MTR_3g015490 | 53.472 | 144 | 59 | 2 | 15 | 153 | 3 | 143 | 1.32e-46 | 152 |
MS.gene79006.t1 | MTR_3g088630 | 49.342 | 152 | 62 | 3 | 10 | 147 | 16 | 166 | 7.78e-46 | 152 |
MS.gene79006.t1 | MTR_6g007460 | 39.698 | 199 | 61 | 4 | 15 | 159 | 10 | 203 | 3.53e-37 | 129 |
MS.gene79006.t1 | MTR_4g061360 | 35.556 | 135 | 74 | 2 | 16 | 150 | 89 | 210 | 8.61e-19 | 85.1 |
MS.gene79006.t1 | MTR_3g092780 | 27.461 | 193 | 114 | 3 | 16 | 195 | 56 | 235 | 2.22e-17 | 81.3 |
MS.gene79006.t1 | MTR_3g092780 | 27.461 | 193 | 114 | 3 | 16 | 195 | 56 | 235 | 2.37e-17 | 80.9 |
MS.gene79006.t1 | MTR_3g092780 | 26.804 | 194 | 115 | 3 | 16 | 195 | 56 | 236 | 3.60e-17 | 80.5 |
MS.gene79006.t1 | MTR_3g092780 | 26.804 | 194 | 115 | 3 | 16 | 195 | 56 | 236 | 4.07e-17 | 80.5 |
MS.gene79006.t1 | MTR_4g051330 | 57.143 | 56 | 24 | 0 | 98 | 153 | 77 | 132 | 1.70e-15 | 71.6 |
MS.gene79006.t1 | MTR_1g067110 | 27.184 | 206 | 121 | 4 | 18 | 208 | 87 | 278 | 3.21e-15 | 74.7 |
MS.gene79006.t1 | MTR_1g067110 | 27.184 | 206 | 121 | 4 | 18 | 208 | 87 | 278 | 4.33e-15 | 74.3 |
MS.gene79006.t1 | MTR_8g024260 | 30.216 | 139 | 84 | 1 | 14 | 152 | 34 | 159 | 1.10e-14 | 73.2 |
MS.gene79006.t1 | MTR_4g131580 | 26.708 | 161 | 102 | 3 | 16 | 176 | 21 | 165 | 1.37e-13 | 70.1 |
MS.gene79006.t1 | MTR_7g118260 | 29.630 | 135 | 82 | 2 | 18 | 152 | 16 | 137 | 3.33e-13 | 68.9 |
MS.gene79006.t1 | MTR_7g118260 | 29.630 | 135 | 82 | 2 | 18 | 152 | 16 | 137 | 3.48e-13 | 68.6 |
MS.gene79006.t1 | MTR_4g131600 | 27.059 | 170 | 104 | 5 | 18 | 187 | 26 | 175 | 8.07e-13 | 67.8 |
MS.gene79006.t1 | MTR_4g131570 | 26.543 | 162 | 103 | 4 | 16 | 177 | 21 | 166 | 2.09e-12 | 66.6 |
MS.gene79006.t1 | MTR_3g037390 | 27.059 | 170 | 102 | 5 | 11 | 172 | 19 | 174 | 3.21e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79006.t1 | AT1G59940 | 55.066 | 227 | 65 | 4 | 11 | 228 | 28 | 226 | 1.74e-73 | 223 |
MS.gene79006.t1 | AT1G59940 | 55.963 | 218 | 77 | 3 | 11 | 228 | 120 | 318 | 2.40e-72 | 223 |
MS.gene79006.t1 | AT1G10470 | 55.118 | 254 | 53 | 7 | 11 | 232 | 15 | 239 | 3.27e-71 | 218 |
MS.gene79006.t1 | AT1G10470 | 55.118 | 254 | 53 | 7 | 11 | 232 | 29 | 253 | 5.19e-71 | 218 |
MS.gene79006.t1 | AT3G48100 | 71.223 | 139 | 37 | 2 | 16 | 154 | 25 | 160 | 1.02e-64 | 199 |
MS.gene79006.t1 | AT5G62920 | 75.385 | 130 | 26 | 2 | 16 | 144 | 25 | 149 | 2.62e-63 | 196 |
MS.gene79006.t1 | AT1G19050 | 62.914 | 151 | 52 | 1 | 1 | 151 | 9 | 155 | 4.81e-60 | 188 |
MS.gene79006.t1 | AT1G74890 | 69.173 | 133 | 37 | 1 | 15 | 147 | 17 | 145 | 3.71e-59 | 186 |
MS.gene79006.t1 | AT3G57040 | 59.310 | 145 | 53 | 1 | 15 | 153 | 8 | 152 | 1.46e-57 | 182 |
MS.gene79006.t1 | AT3G57040 | 59.310 | 145 | 53 | 1 | 15 | 153 | 8 | 152 | 1.46e-57 | 182 |
MS.gene79006.t1 | AT2G41310 | 59.864 | 147 | 55 | 2 | 15 | 157 | 8 | 154 | 2.16e-56 | 179 |
MS.gene79006.t1 | AT3G56380 | 59.701 | 134 | 51 | 1 | 14 | 147 | 18 | 148 | 2.53e-56 | 177 |
MS.gene79006.t1 | AT2G40670 | 60.000 | 135 | 51 | 2 | 14 | 147 | 27 | 159 | 3.34e-55 | 174 |
MS.gene79006.t1 | AT3G56380 | 59.259 | 135 | 51 | 2 | 14 | 147 | 18 | 149 | 1.58e-54 | 172 |
MS.gene79006.t1 | AT2G40670 | 59.559 | 136 | 51 | 3 | 14 | 147 | 27 | 160 | 2.15e-53 | 170 |
MS.gene79006.t1 | AT1G10470 | 41.176 | 187 | 51 | 7 | 79 | 232 | 17 | 177 | 1.90e-22 | 90.9 |
MS.gene79006.t1 | AT2G07440 | 55.000 | 60 | 27 | 0 | 98 | 157 | 9 | 68 | 3.70e-15 | 70.5 |
MS.gene79006.t1 | AT2G46790 | 29.630 | 135 | 82 | 2 | 16 | 150 | 37 | 158 | 5.43e-15 | 73.9 |
MS.gene79006.t1 | AT2G46790 | 29.630 | 135 | 82 | 2 | 16 | 150 | 37 | 158 | 7.16e-15 | 73.6 |
MS.gene79006.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 8.86e-15 | 73.2 |
MS.gene79006.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 8.86e-15 | 73.2 |
MS.gene79006.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 8.86e-15 | 73.2 |
MS.gene79006.t1 | AT5G24470 | 30.657 | 137 | 80 | 3 | 16 | 152 | 52 | 173 | 1.28e-14 | 73.2 |
MS.gene79006.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 1.67e-14 | 72.4 |
MS.gene79006.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 1.67e-14 | 72.4 |
MS.gene79006.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 1.67e-14 | 72.4 |
MS.gene79006.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 1.87e-14 | 72.4 |
MS.gene79006.t1 | AT5G02810 | 29.630 | 135 | 82 | 1 | 16 | 150 | 78 | 199 | 5.90e-14 | 71.2 |
MS.gene79006.t1 | AT5G07210 | 32.576 | 132 | 72 | 3 | 15 | 146 | 15 | 129 | 8.56e-14 | 70.5 |
Find 53 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATAAGAGCACTACAATTTC+TGG | 0.202396 | 5.2:+26845079 | MS.gene79006:CDS |
TTCTCAAGAGGTTCATGTTT+TGG | 0.250601 | 5.2:+26844858 | MS.gene79006:CDS |
GTTTCCTTAGCCTGGGTTGA+AGG | 0.354177 | 5.2:+26845228 | MS.gene79006:intron |
CTCAAAATTTCAGCTTGTAA+AGG | 0.419180 | 5.2:+26844925 | MS.gene79006:CDS |
AACTCATAACCAGTCATTCC+TGG | 0.425647 | 5.2:-26845280 | None:intergenic |
AGCACTACAATTTCTGGGGT+TGG | 0.454081 | 5.2:+26845085 | MS.gene79006:CDS |
ATAAGAGCACTACAATTTCT+GGG | 0.455946 | 5.2:+26845080 | MS.gene79006:CDS |
TGAGTTGCTTAAGAAAATCA+AGG | 0.460054 | 5.2:+26845297 | MS.gene79006:CDS |
ATTACAGATTATTGCATGCC+AGG | 0.468259 | 5.2:+26845262 | MS.gene79006:CDS |
TATTGCATGCCAGGAATGAC+TGG | 0.472610 | 5.2:+26845271 | MS.gene79006:CDS |
TTAGTTACTGCAGTGGATAG+TGG | 0.477996 | 5.2:+26845056 | MS.gene79006:intron |
GGATAGGGATCAACAACAAA+AGG | 0.483740 | 5.2:+26845919 | MS.gene79006:CDS |
TAACGATAACTTCAGTGTCT+TGG | 0.490936 | 5.2:-26845857 | None:intergenic |
ATATCTTGCCACGCATTGAC+AGG | 0.495679 | 5.2:+26845462 | MS.gene79006:CDS |
TCCTTAGCCTGGGTTGAAGG+TGG | 0.500088 | 5.2:+26845231 | MS.gene79006:intron |
GATGGTGATGGTGTAGGGAT+AGG | 0.502607 | 5.2:+26845903 | MS.gene79006:CDS |
CACTGGAATTGCTCTAAAAG+TGG | 0.504716 | 5.2:-26845420 | None:intergenic |
GACAACAAGGGAGGTTAGAG+CGG | 0.506833 | 5.2:+26845830 | MS.gene79006:CDS |
ATGGTGATGGTGTAGGGATA+GGG | 0.509422 | 5.2:+26845904 | MS.gene79006:CDS |
ATTGGAGAATCAAGAATGTC+GGG | 0.519018 | 5.2:-26846047 | None:intergenic |
ATACCGATGGTGATGGTGTA+GGG | 0.528393 | 5.2:+26845898 | MS.gene79006:CDS |
TCCAAAGAGTCATTCGGTGC+CGG | 0.528910 | 5.2:-26846087 | None:intergenic |
TTCACGTCAGATAATTTCAC+TGG | 0.529676 | 5.2:-26845789 | None:intergenic |
TTCTTGATTCTCCAATCAGA+CGG | 0.540193 | 5.2:+26846054 | MS.gene79006:CDS |
TTGATCGTAAAGTCATTGAA+AGG | 0.541223 | 5.2:+26844899 | MS.gene79006:CDS |
TGACAATCCAAAGAGTCATT+CGG | 0.543587 | 5.2:-26846093 | None:intergenic |
ATCAGACGGCTTAAAATGAC+CGG | 0.557664 | 5.2:+26846068 | MS.gene79006:CDS |
GATTGGAGAATCAAGAATGT+CGG | 0.564103 | 5.2:-26846048 | None:intergenic |
AAGAATGTCGGGTGAAGACA+AGG | 0.567906 | 5.2:-26846036 | None:intergenic |
TCAGAAGACATAATCACCAC+TGG | 0.573815 | 5.2:-26845437 | None:intergenic |
GATACCGATGGTGATGGTGT+AGG | 0.573908 | 5.2:+26845897 | MS.gene79006:CDS |
TATTGATGTTGATTCTCAAG+AGG | 0.575024 | 5.2:+26844846 | MS.gene79006:CDS |
ACTAGATCCACCTTCAACCC+AGG | 0.575538 | 5.2:-26845238 | None:intergenic |
GAAGACAAGGGTGATGATGA+AGG | 0.594875 | 5.2:-26846023 | None:intergenic |
ACAACAAGGGAGGTTAGAGC+GGG | 0.595105 | 5.2:+26845831 | MS.gene79006:CDS |
TCCTAGTACCTGTCAATGCG+TGG | 0.599655 | 5.2:-26845470 | None:intergenic |
AAATGTAGATGCTTGGAGGA+AGG | 0.613553 | 5.2:+26845744 | MS.gene79006:intron |
TATCCCTACACCATCACCAT+CGG | 0.615047 | 5.2:-26845901 | None:intergenic |
GGTATCGTTACCAACGGTGT+TGG | 0.619281 | 5.2:-26845880 | None:intergenic |
GAAGGTGAAGGTGATGATGA+TGG | 0.633241 | 5.2:-26846005 | None:intergenic |
GTTATCGTTACCAACACCGT+TGG | 0.636947 | 5.2:+26845870 | MS.gene79006:CDS |
TGAAGAGTTACATGACAACA+AGG | 0.639529 | 5.2:+26845817 | MS.gene79006:CDS |
ATGCTTGGAGGAAGGTGCAG+AGG | 0.640084 | 5.2:+26845752 | MS.gene79006:CDS |
TAAGAGCACTACAATTTCTG+GGG | 0.651134 | 5.2:+26845081 | MS.gene79006:CDS |
AAGGGTGATGATGAAGGTGA+AGG | 0.653789 | 5.2:-26846017 | None:intergenic |
GGTAACGATACCGATGGTGA+TGG | 0.655594 | 5.2:+26845891 | MS.gene79006:CDS |
ACCGTTGGTAACGATACCGA+TGG | 0.664681 | 5.2:+26845885 | MS.gene79006:CDS |
ACCATCGGTATCGTTACCAA+CGG | 0.666121 | 5.2:-26845886 | None:intergenic |
GAAAGTGATGATGAAGTAGA+CGG | 0.694541 | 5.2:-26845978 | None:intergenic |
GAGTTACATGACAACAAGGG+AGG | 0.698554 | 5.2:+26845821 | MS.gene79006:CDS |
GAAGAGTTACATGACAACAA+GGG | 0.719262 | 5.2:+26845818 | MS.gene79006:CDS |
AGAATGTCGGGTGAAGACAA+GGG | 0.739456 | 5.2:-26846035 | None:intergenic |
AGTGATGATGAAGTAGACGG+TGG | 0.740839 | 5.2:-26845975 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATAAAAAAATTTAAAT+TGG | - | chr5.2:26845156-26845175 | None:intergenic | 0.0% |
!! | GAAATTATTATGTAGAAATA+TGG | + | chr5.2:26845700-26845719 | MS.gene79006:intron | 15.0% |
!! | TCATATACTTTGTATTAAAT+TGG | - | chr5.2:26845631-26845650 | None:intergenic | 15.0% |
!!! | AATAAAAGACTTTAAAAATG+AGG | - | chr5.2:26845005-26845024 | None:intergenic | 15.0% |
!! | ACAAAACAAAAAGAAGAAAA+TGG | + | chr5.2:26844969-26844988 | MS.gene79006:intron | 20.0% |
!! | CAATAAAGTGTAAAAATGAA+GGG | - | chr5.2:26845343-26845362 | None:intergenic | 20.0% |
!! | TCAATAAAGTGTAAAAATGA+AGG | - | chr5.2:26845344-26845363 | None:intergenic | 20.0% |
!!! | TATGTTAAAATTGTTGTTAG+TGG | + | chr5.2:26845657-26845676 | MS.gene79006:intron | 20.0% |
! | ATTGAAAAAATGTAGATGCT+TGG | + | chr5.2:26845737-26845756 | MS.gene79006:intron | 25.0% |
!!! | TTTATTTTTAGTTACTGCAG+TGG | + | chr5.2:26845049-26845068 | MS.gene79006:intron | 25.0% |
CTCAAAATTTCAGCTTGTAA+AGG | + | chr5.2:26844925-26844944 | MS.gene79006:CDS | 30.0% | |
TGAGTTGCTTAAGAAAATCA+AGG | + | chr5.2:26845297-26845316 | MS.gene79006:CDS | 30.0% | |
TTCCTGCTTCAAATTAAACT+TGG | - | chr5.2:26845396-26845415 | None:intergenic | 30.0% | |
TTGATCGTAAAGTCATTGAA+AGG | + | chr5.2:26844899-26844918 | MS.gene79006:CDS | 30.0% | |
!! | AATAAGAGCACTACAATTTC+TGG | + | chr5.2:26845079-26845098 | MS.gene79006:CDS | 30.0% |
!! | ATAAGAGCACTACAATTTCT+GGG | + | chr5.2:26845080-26845099 | MS.gene79006:CDS | 30.0% |
!! | TATTGATGTTGATTCTCAAG+AGG | + | chr5.2:26844846-26844865 | MS.gene79006:CDS | 30.0% |
!! | TTATTTTGTTTCCTTAGCCT+GGG | + | chr5.2:26845221-26845240 | MS.gene79006:intron | 30.0% |
!! | TTCCAAGTTTAATTTGAAGC+AGG | + | chr5.2:26845391-26845410 | MS.gene79006:intron | 30.0% |
!!! | TTTATTTTGTTTCCTTAGCC+TGG | + | chr5.2:26845220-26845239 | MS.gene79006:intron | 30.0% |
ATTACAGATTATTGCATGCC+AGG | + | chr5.2:26845262-26845281 | MS.gene79006:CDS | 35.0% | |
ATTGGAGAATCAAGAATGTC+GGG | - | chr5.2:26846050-26846069 | None:intergenic | 35.0% | |
GAAAAAATGTAGATGCTTGG+AGG | + | chr5.2:26845740-26845759 | MS.gene79006:intron | 35.0% | |
GAAGAGTTACATGACAACAA+GGG | + | chr5.2:26845818-26845837 | MS.gene79006:CDS | 35.0% | |
GATTGGAGAATCAAGAATGT+CGG | - | chr5.2:26846051-26846070 | None:intergenic | 35.0% | |
TAACGATAACTTCAGTGTCT+TGG | - | chr5.2:26845860-26845879 | None:intergenic | 35.0% | |
TGAAGAGTTACATGACAACA+AGG | + | chr5.2:26845817-26845836 | MS.gene79006:CDS | 35.0% | |
TTCACGTCAGATAATTTCAC+TGG | - | chr5.2:26845792-26845811 | None:intergenic | 35.0% | |
TTCTTGATTCTCCAATCAGA+CGG | + | chr5.2:26846054-26846073 | MS.gene79006:CDS | 35.0% | |
! | GAAAGTGATGATGAAGTAGA+CGG | - | chr5.2:26845981-26846000 | None:intergenic | 35.0% |
! | TTCTCAAGAGGTTCATGTTT+TGG | + | chr5.2:26844858-26844877 | MS.gene79006:CDS | 35.0% |
!! | TAAGAGCACTACAATTTCTG+GGG | + | chr5.2:26845081-26845100 | MS.gene79006:CDS | 35.0% |
AAATGTAGATGCTTGGAGGA+AGG | + | chr5.2:26845744-26845763 | MS.gene79006:intron | 40.0% | |
AACTCATAACCAGTCATTCC+TGG | - | chr5.2:26845283-26845302 | None:intergenic | 40.0% | |
ATCAGACGGCTTAAAATGAC+CGG | + | chr5.2:26846068-26846087 | MS.gene79006:CDS | 40.0% | |
GGATAGGGATCAACAACAAA+AGG | + | chr5.2:26845919-26845938 | MS.gene79006:CDS | 40.0% | |
TCAGAAGACATAATCACCAC+TGG | - | chr5.2:26845440-26845459 | None:intergenic | 40.0% | |
TTAGTTACTGCAGTGGATAG+TGG | + | chr5.2:26845056-26845075 | MS.gene79006:intron | 40.0% | |
!! | CACTGGAATTGCTCTAAAAG+TGG | - | chr5.2:26845423-26845442 | None:intergenic | 40.0% |
!! | GTCATTTTAAGCCGTCTGAT+TGG | - | chr5.2:26846068-26846087 | None:intergenic | 40.0% |
!!! | CACTTTTAGAGCAATTCCAG+TGG | + | chr5.2:26845421-26845440 | MS.gene79006:CDS | 40.0% |
AAGAATGTCGGGTGAAGACA+AGG | - | chr5.2:26846039-26846058 | None:intergenic | 45.0% | |
ACCATCGGTATCGTTACCAA+CGG | - | chr5.2:26845889-26845908 | None:intergenic | 45.0% | |
AGAATGTCGGGTGAAGACAA+GGG | - | chr5.2:26846038-26846057 | None:intergenic | 45.0% | |
GAGTTACATGACAACAAGGG+AGG | + | chr5.2:26845821-26845840 | MS.gene79006:CDS | 45.0% | |
GTTATCGTTACCAACACCGT+TGG | + | chr5.2:26845870-26845889 | MS.gene79006:CDS | 45.0% | |
TATCCCTACACCATCACCAT+CGG | - | chr5.2:26845904-26845923 | None:intergenic | 45.0% | |
TATTGCATGCCAGGAATGAC+TGG | + | chr5.2:26845271-26845290 | MS.gene79006:CDS | 45.0% | |
! | AAGGGTGATGATGAAGGTGA+AGG | - | chr5.2:26846020-26846039 | None:intergenic | 45.0% |
! | AGTGATGATGAAGTAGACGG+TGG | - | chr5.2:26845978-26845997 | None:intergenic | 45.0% |
! | ATATCTTGCCACGCATTGAC+AGG | + | chr5.2:26845462-26845481 | MS.gene79006:CDS | 45.0% |
! | GAAGACAAGGGTGATGATGA+AGG | - | chr5.2:26846026-26846045 | None:intergenic | 45.0% |
! | GAAGGTGAAGGTGATGATGA+TGG | - | chr5.2:26846008-26846027 | None:intergenic | 45.0% |
!! | AGCACTACAATTTCTGGGGT+TGG | + | chr5.2:26845085-26845104 | MS.gene79006:CDS | 45.0% |
!! | ATACCGATGGTGATGGTGTA+GGG | + | chr5.2:26845898-26845917 | MS.gene79006:CDS | 45.0% |
!! | ATGGTGATGGTGTAGGGATA+GGG | + | chr5.2:26845904-26845923 | MS.gene79006:CDS | 45.0% |
!!! | TTTAAATTTTTTTATTTTAG+CGG | + | chr5.2:26845157-26845176 | MS.gene79006:intron | 5.0% |
ACAACAAGGGAGGTTAGAGC+GGG | + | chr5.2:26845831-26845850 | MS.gene79006:CDS | 50.0% | |
ACTAGATCCACCTTCAACCC+AGG | - | chr5.2:26845241-26845260 | None:intergenic | 50.0% | |
GACAACAAGGGAGGTTAGAG+CGG | + | chr5.2:26845830-26845849 | MS.gene79006:CDS | 50.0% | |
GGTAACGATACCGATGGTGA+TGG | + | chr5.2:26845891-26845910 | MS.gene79006:CDS | 50.0% | |
GGTATCGTTACCAACGGTGT+TGG | - | chr5.2:26845883-26845902 | None:intergenic | 50.0% | |
TCCTAGTACCTGTCAATGCG+TGG | - | chr5.2:26845473-26845492 | None:intergenic | 50.0% | |
! | GTTTCCTTAGCCTGGGTTGA+AGG | + | chr5.2:26845228-26845247 | MS.gene79006:intron | 50.0% |
!! | ACCGTTGGTAACGATACCGA+TGG | + | chr5.2:26845885-26845904 | MS.gene79006:CDS | 50.0% |
!! | GATACCGATGGTGATGGTGT+AGG | + | chr5.2:26845897-26845916 | MS.gene79006:CDS | 50.0% |
!! | GATGGTGATGGTGTAGGGAT+AGG | + | chr5.2:26845903-26845922 | MS.gene79006:CDS | 50.0% |
TCCACCTTCAACCCAGGCTA+AGG | - | chr5.2:26845235-26845254 | None:intergenic | 55.0% | |
! | ATGCTTGGAGGAAGGTGCAG+AGG | + | chr5.2:26845752-26845771 | MS.gene79006:CDS | 55.0% |
! | GCCACGCATTGACAGGTACT+AGG | + | chr5.2:26845469-26845488 | MS.gene79006:intron | 55.0% |
! | TCCTTAGCCTGGGTTGAAGG+TGG | + | chr5.2:26845231-26845250 | MS.gene79006:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 26844823 | 26846100 | 26844823 | ID=MS.gene79006 |
chr5.2 | mRNA | 26844823 | 26846100 | 26844823 | ID=MS.gene79006.t1;Parent=MS.gene79006 |
chr5.2 | exon | 26844823 | 26844946 | 26844823 | ID=MS.gene79006.t1.exon1;Parent=MS.gene79006.t1 |
chr5.2 | CDS | 26844823 | 26844946 | 26844823 | ID=cds.MS.gene79006.t1;Parent=MS.gene79006.t1 |
chr5.2 | exon | 26845060 | 26845145 | 26845060 | ID=MS.gene79006.t1.exon2;Parent=MS.gene79006.t1 |
chr5.2 | CDS | 26845060 | 26845145 | 26845060 | ID=cds.MS.gene79006.t1;Parent=MS.gene79006.t1 |
chr5.2 | exon | 26845238 | 26845318 | 26845238 | ID=MS.gene79006.t1.exon3;Parent=MS.gene79006.t1 |
chr5.2 | CDS | 26845238 | 26845318 | 26845238 | ID=cds.MS.gene79006.t1;Parent=MS.gene79006.t1 |
chr5.2 | exon | 26845413 | 26845483 | 26845413 | ID=MS.gene79006.t1.exon4;Parent=MS.gene79006.t1 |
chr5.2 | CDS | 26845413 | 26845483 | 26845413 | ID=cds.MS.gene79006.t1;Parent=MS.gene79006.t1 |
chr5.2 | exon | 26845752 | 26846100 | 26845752 | ID=MS.gene79006.t1.exon5;Parent=MS.gene79006.t1 |
chr5.2 | CDS | 26845752 | 26846100 | 26845752 | ID=cds.MS.gene79006.t1;Parent=MS.gene79006.t1 |
Gene Sequence |
Protein sequence |