Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79541.t1 | XP_013454739.1 | 89.3 | 448 | 37 | 2 | 1 | 448 | 1 | 437 | 8.10E-139 | 503.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79541.t1 | Q9LW88 | 38.0 | 474 | 257 | 9 | 1 | 447 | 1 | 464 | 6.6e-57 | 223.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79541.t1 | A0A072USC3 | 89.3 | 448 | 37 | 2 | 1 | 448 | 1 | 437 | 5.8e-139 | 503.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79541 | MS.gene036223 | PPI |
| MS.gene32049 | MS.gene79541 | PPI |
| MS.gene39989 | MS.gene79541 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79541.t1 | MTR_4g011930 | 93.973 | 448 | 16 | 2 | 1 | 448 | 1 | 437 | 0.0 | 823 |
| MS.gene79541.t1 | MTR_7g060890 | 52.448 | 143 | 24 | 1 | 1 | 143 | 1 | 99 | 6.51e-33 | 120 |
| MS.gene79541.t1 | MTR_3g032750 | 51.049 | 143 | 32 | 3 | 1 | 143 | 1 | 105 | 2.63e-31 | 121 |
| MS.gene79541.t1 | MTR_1g112060 | 76.136 | 88 | 19 | 1 | 1 | 86 | 115 | 202 | 3.57e-28 | 112 |
| MS.gene79541.t1 | MTR_4g014050 | 29.864 | 221 | 128 | 8 | 3 | 218 | 717 | 915 | 1.65e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79541.t1 | AT1G52380 | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.26e-104 | 317 |
| MS.gene79541.t1 | AT1G52380 | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.26e-104 | 317 |
| MS.gene79541.t1 | AT1G52380 | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.26e-104 | 317 |
| MS.gene79541.t1 | AT1G52380 | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.26e-104 | 317 |
| MS.gene79541.t1 | AT3G15970 | 42.562 | 484 | 221 | 14 | 1 | 447 | 1 | 464 | 6.65e-92 | 286 |
| MS.gene79541.t1 | AT3G15970 | 42.562 | 484 | 221 | 14 | 1 | 447 | 1 | 464 | 6.65e-92 | 286 |
Find 122 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACAGGTCTTGCTGGGTC+TGG | 0.282996 | 4.2:+88314195 | MS.gene79541:CDS |
| TGAAATGAAGCTCACAAATA+TGG | 0.293632 | 4.2:+88314608 | MS.gene79541:CDS |
| ATATTTGTGAGCTTCATTTC+AGG | 0.313432 | 4.2:-88314606 | None:intergenic |
| CCGAGTCCTTATGAGGTCTA+AGG | 0.316914 | 4.2:+88314548 | MS.gene79541:CDS |
| TTATCTAACGCTGGAAGTTC+TGG | 0.321462 | 4.2:+88314330 | MS.gene79541:CDS |
| TTGAAACCTGACCAGCCTTT+AGG | 0.324636 | 4.2:+88314300 | MS.gene79541:CDS |
| TAAGAAGGAAGTTGCTGATA+AGG | 0.332879 | 4.2:+88313939 | MS.gene79541:CDS |
| TGTTACTTTGACCATTCTTC+TGG | 0.332895 | 4.2:-88313614 | None:intergenic |
| AACGCTGGAAGTTCTGGTTT+TGG | 0.337784 | 4.2:+88314336 | MS.gene79541:CDS |
| AATGCCTTCACAGGTCTTGC+TGG | 0.338943 | 4.2:+88314189 | MS.gene79541:CDS |
| CCTGACCAGCCTTTAGGTCT+TGG | 0.361060 | 4.2:+88314306 | MS.gene79541:CDS |
| TCATCTTCCTCGTCGTCAAT+AGG | 0.362423 | 4.2:-88313538 | None:intergenic |
| ACCTCAGGAGCTTTGCTCTC+TGG | 0.367425 | 4.2:-88313775 | None:intergenic |
| TGTAGACCCGAAGGAAAATA+AGG | 0.369166 | 4.2:-88314229 | None:intergenic |
| TCTTCATCCTTAGCTTTCTC+TGG | 0.371345 | 4.2:-88313742 | None:intergenic |
| AACAAATGATGGGTCTACTT+TGG | 0.384601 | 4.2:+88314251 | MS.gene79541:CDS |
| CGTATACCAGCGAAAGGGTT+TGG | 0.386213 | 4.2:-88313661 | None:intergenic |
| GAAGCCTTGGGAGAGTTCTC+TGG | 0.387453 | 4.2:-88314780 | None:intergenic |
| TCTACTTTGGGTAGTGGGTC+CGG | 0.396921 | 4.2:+88314264 | MS.gene79541:CDS |
| TCTTGAAAGTCCCGGCTTCA+AGG | 0.403876 | 4.2:-88313567 | None:intergenic |
| TTCCTGCAGTGTTTCAGTCT+TGG | 0.406473 | 4.2:-88314382 | None:intergenic |
| GAGCGACAGTGACAACTCTA+AGG | 0.408430 | 4.2:+88313870 | MS.gene79541:CDS |
| AATTTCCCTTAGACCTCATA+AGG | 0.415992 | 4.2:-88314554 | None:intergenic |
| AGCTCAAACATCAGAAGCCT+TGG | 0.417787 | 4.2:-88314793 | None:intergenic |
| CCTTACAGTCGTCAAAGAAA+AGG | 0.420646 | 4.2:+88313485 | MS.gene79541:CDS |
| CCAAGACCTAAAGGCTGGTC+AGG | 0.423398 | 4.2:-88314306 | None:intergenic |
| ACAAATGATGGGTCTACTTT+GGG | 0.423993 | 4.2:+88314252 | MS.gene79541:CDS |
| GGTTGGAAGGAACGTGGAAA+GGG | 0.429315 | 4.2:+88314483 | MS.gene79541:CDS |
| TTTGCATTGAAGTTCAAAGA+TGG | 0.435158 | 4.2:+88314687 | MS.gene79541:CDS |
| ACTGAATCCACTGCCAAGTC+TGG | 0.437172 | 4.2:+88313697 | MS.gene79541:CDS |
| TATTTGTGAGCTTCATTTCA+GGG | 0.440319 | 4.2:-88314605 | None:intergenic |
| TTCGGGTCTACAACAAATGA+TGG | 0.442733 | 4.2:+88314240 | MS.gene79541:CDS |
| CCTTAGACCTCATAAGGACT+CGG | 0.444298 | 4.2:-88314548 | None:intergenic |
| GAGCAAAGCTCCTGAGGTTG+AGG | 0.446588 | 4.2:+88313780 | MS.gene79541:CDS |
| AGGCAAGGAGCTTGCGGAGA+AGG | 0.452508 | 4.2:+88313846 | MS.gene79541:CDS |
| GGTAGATAATGAACAGAGTA+AGG | 0.452713 | 4.2:+88313891 | MS.gene79541:CDS |
| TCGTCAAAGAAAAGGGCTGC+TGG | 0.453932 | 4.2:+88313493 | MS.gene79541:CDS |
| AGTAAGTGAAAGCAAGGATA+AGG | 0.460546 | 4.2:+88314062 | MS.gene79541:CDS |
| GATTGAAAATGAGGATAAGA+AGG | 0.464936 | 4.2:+88313924 | MS.gene79541:CDS |
| CAGGAAGTCGTTGTTGAAAC+CGG | 0.466180 | 4.2:+88314399 | MS.gene79541:CDS |
| GCTCACAAATATGGAGAAGA+AGG | 0.474042 | 4.2:+88314617 | MS.gene79541:CDS |
| ATGACGCTGCCCTTGAAGCC+GGG | 0.474337 | 4.2:+88313557 | MS.gene79541:CDS |
| GATGACGCTGCCCTTGAAGC+CGG | 0.476093 | 4.2:+88313556 | MS.gene79541:CDS |
| ATGGGTCTACTTTGGGTAGT+GGG | 0.480263 | 4.2:+88314259 | MS.gene79541:CDS |
| ACTGGCTTTCTTGAAAGTCC+CGG | 0.480603 | 4.2:-88313575 | None:intergenic |
| AGTAGTAGCTTCACCAGACT+TGG | 0.481005 | 4.2:-88313710 | None:intergenic |
| GGTTGCAAGAACCTCCTCAC+TGG | 0.485123 | 4.2:-88313593 | None:intergenic |
| AAATAGTGAAAGCAAGGATA+AGG | 0.486758 | 4.2:+88314032 | MS.gene79541:CDS |
| CCCTTCAGTGGCACATGCAA+AGG | 0.487875 | 4.2:-88314646 | None:intergenic |
| AGGTTGGAAGGAACGTGGAA+AGG | 0.496279 | 4.2:+88314482 | MS.gene79541:CDS |
| CGTCGTCAATAGGAGTGTCT+CGG | 0.502212 | 4.2:-88313528 | None:intergenic |
| GCTGTTGAAATGATTTGAAA+GGG | 0.504844 | 4.2:-88314152 | None:intergenic |
| CTTACAGTCGTCAAAGAAAA+GGG | 0.505584 | 4.2:+88313486 | MS.gene79541:CDS |
| GATGGGTCTACTTTGGGTAG+TGG | 0.506943 | 4.2:+88314258 | MS.gene79541:CDS |
| TTGCATTGAAGTTCAAAGAT+GGG | 0.509535 | 4.2:+88314688 | MS.gene79541:CDS |
| AGTCTTGAAATCCTCCACTA+TGG | 0.509950 | 4.2:-88314712 | None:intergenic |
| TTGGAGTAGATTTATTCTGT+TGG | 0.517375 | 4.2:-88313642 | None:intergenic |
| TTGAGTTTGCAGATGGAGGT+TGG | 0.519670 | 4.2:+88314466 | MS.gene79541:CDS |
| TTAGATAAACCAAGACCTAA+AGG | 0.521590 | 4.2:-88314315 | None:intergenic |
| AGTAAGCGAAAGCAAAGATA+AGG | 0.521711 | 4.2:+88314092 | MS.gene79541:CDS |
| TTGTTTGAGTTTGCAGATGG+AGG | 0.522768 | 4.2:+88314462 | MS.gene79541:CDS |
| GTAGATTTGTCCTCAACCTC+AGG | 0.523191 | 4.2:-88313790 | None:intergenic |
| ATGCCTTCACAGGTCTTGCT+GGG | 0.525899 | 4.2:+88314190 | MS.gene79541:CDS |
| TGGACGTAAGATTGAAAATG+AGG | 0.525984 | 4.2:+88313915 | MS.gene79541:CDS |
| GTCGTCAATAGGAGTGTCTC+GGG | 0.531300 | 4.2:-88313527 | None:intergenic |
| GTGTTGTTTGAGTTTGCAGA+TGG | 0.533735 | 4.2:+88314459 | MS.gene79541:CDS |
| CGGTGAAGAAAACGAGGAAG+TGG | 0.537379 | 4.2:+88314419 | MS.gene79541:CDS |
| CTTGAAAGTCCCGGCTTCAA+GGG | 0.539539 | 4.2:-88313566 | None:intergenic |
| AGCTGTTGAAATGATTTGAA+AGG | 0.539560 | 4.2:-88314153 | None:intergenic |
| CTATCACAGCACACAAGGGT+GGG | 0.539717 | 4.2:+88314736 | MS.gene79541:CDS |
| GTTTGCAGATGGAGGTTGGA+AGG | 0.542312 | 4.2:+88314470 | MS.gene79541:CDS |
| GCTCAAACATCAGAAGCCTT+GGG | 0.542932 | 4.2:-88314792 | None:intergenic |
| GGTTCTTGCAACCAGAAGAA+TGG | 0.542934 | 4.2:+88313603 | MS.gene79541:CDS |
| AGACAAAGTAAGTGAAAGCA+AGG | 0.543217 | 4.2:+88314056 | MS.gene79541:CDS |
| GATAATGAACAGAGTAAGGA+TGG | 0.544320 | 4.2:+88313895 | MS.gene79541:CDS |
| AAAGGGCCACCTTCAGCAGT+AGG | 0.547591 | 4.2:-88314135 | None:intergenic |
| AGCAATCAAAATGCCTTCAC+AGG | 0.548375 | 4.2:+88314180 | MS.gene79541:CDS |
| ATAAACCAAGACCTAAAGGC+TGG | 0.555593 | 4.2:-88314311 | None:intergenic |
| AGCTTCACCAGACTTGGCAG+TGG | 0.560811 | 4.2:-88313704 | None:intergenic |
| AACTAGTGGAACAGAAAAGA+AGG | 0.562452 | 4.2:+88314524 | MS.gene79541:CDS |
| GCCAGAGAGCAAAGCTCCTG+AGG | 0.563576 | 4.2:+88313774 | MS.gene79541:CDS |
| TTCCAAGACTGAAACACTGC+AGG | 0.563759 | 4.2:+88314380 | MS.gene79541:CDS |
| GCAGTGGATTCAGTAGGAGC+AGG | 0.564389 | 4.2:-88313688 | None:intergenic |
| CGTCAAAGAAAAGGGCTGCT+GGG | 0.566029 | 4.2:+88313494 | MS.gene79541:CDS |
| CGAGTCCTTATGAGGTCTAA+GGG | 0.566826 | 4.2:+88314549 | MS.gene79541:CDS |
| CAATGCAGGCAAGGAGCTTG+CGG | 0.566828 | 4.2:+88313840 | MS.gene79541:CDS |
| AAGACGGTCTTTCCCTTCAG+TGG | 0.567228 | 4.2:-88314658 | None:intergenic |
| TCTACTCCAAACCCTTTCGC+TGG | 0.571206 | 4.2:+88313655 | MS.gene79541:CDS |
| AGAAGGCCCGAGTCCTTATG+AGG | 0.572817 | 4.2:+88314541 | MS.gene79541:CDS |
| GGCAAGCGTATACCAGCGAA+AGG | 0.572904 | 4.2:-88313667 | None:intergenic |
| GACTGCTATCACAGCACACA+AGG | 0.572911 | 4.2:+88314731 | MS.gene79541:CDS |
| CCTTTGCATGTGCCACTGAA+GGG | 0.575965 | 4.2:+88314646 | MS.gene79541:CDS |
| GAACGGAAATAGTGAAAGCA+AGG | 0.577253 | 4.2:+88314026 | MS.gene79541:CDS |
| ACCTTTGCATGTGCCACTGA+AGG | 0.579423 | 4.2:+88314645 | MS.gene79541:CDS |
| AGACCCAGCAAGACCTGTGA+AGG | 0.582987 | 4.2:-88314193 | None:intergenic |
| GTTCAAAGATGGGTCCATAG+TGG | 0.583030 | 4.2:+88314698 | MS.gene79541:CDS |
| GTGAAAGTGAATGTAACTAG+TGG | 0.595453 | 4.2:+88314510 | MS.gene79541:CDS |
| TACTTCAAACAACGATGTTG+CGG | 0.596477 | 4.2:+88313810 | MS.gene79541:CDS |
| GGTCTTGGTTTATCTAACGC+TGG | 0.598167 | 4.2:+88314321 | MS.gene79541:CDS |
| AGTGACGAGCCTACTGCTGA+AGG | 0.599077 | 4.2:+88314126 | MS.gene79541:CDS |
| CTTAGACCTCATAAGGACTC+GGG | 0.601169 | 4.2:-88314547 | None:intergenic |
| GGACAGAAACAATGCAGGCA+AGG | 0.604459 | 4.2:+88313831 | MS.gene79541:CDS |
| ATCATTTGTTGTAGACCCGA+AGG | 0.607405 | 4.2:-88314238 | None:intergenic |
| TATCACAGCACACAAGGGTG+GGG | 0.607843 | 4.2:+88314737 | MS.gene79541:CDS |
| TCAATGCAAATGTTGAAAGA+CGG | 0.609075 | 4.2:-88314674 | None:intergenic |
| GCTATCACAGCACACAAGGG+TGG | 0.614339 | 4.2:+88314735 | MS.gene79541:CDS |
| TCGGGTCTACAACAAATGAT+GGG | 0.616965 | 4.2:+88314241 | MS.gene79541:CDS |
| GACGAGCCTACTGCTGAAGG+TGG | 0.621305 | 4.2:+88314129 | MS.gene79541:CDS |
| GTTGCGGACAGAAACAATGC+AGG | 0.625399 | 4.2:+88313826 | MS.gene79541:CDS |
| CTCACAAATATGGAGAAGAA+GGG | 0.630174 | 4.2:+88314618 | MS.gene79541:CDS |
| GACTCCAGAGAACTCTCCCA+AGG | 0.630564 | 4.2:+88314776 | MS.gene79541:CDS |
| AACGCAGCCAGAGAAAGCTA+AGG | 0.639096 | 4.2:+88313735 | MS.gene79541:CDS |
| CAAAGATGGGTCCATAGTGG+AGG | 0.639977 | 4.2:+88314701 | MS.gene79541:CDS |
| GCAAGCGTATACCAGCGAAA+GGG | 0.643938 | 4.2:-88313666 | None:intergenic |
| TTTCAAGAAAGCCAGTGAGG+AGG | 0.650952 | 4.2:+88313582 | MS.gene79541:CDS |
| ACTGAGAACAGTGATAAGAA+CGG | 0.660347 | 4.2:+88314009 | MS.gene79541:CDS |
| GACTTTCAAGAAAGCCAGTG+AGG | 0.667433 | 4.2:+88313579 | MS.gene79541:CDS |
| GATGGAGGTTGGAAGGAACG+TGG | 0.668623 | 4.2:+88314477 | MS.gene79541:CDS |
| GACTTGGCAGTGGATTCAGT+AGG | 0.688140 | 4.2:-88313694 | None:intergenic |
| TGAAACCGGTGAAGAAAACG+AGG | 0.705134 | 4.2:+88314413 | MS.gene79541:CDS |
| ACTGCTATCACAGCACACAA+GGG | 0.723065 | 4.2:+88314732 | MS.gene79541:CDS |
| AGACACTCCTATTGACGACG+AGG | 0.724010 | 4.2:+88313531 | MS.gene79541:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTCAATCCAAAAATAGAAC+CGG | - | chr4.2:88314286-88314305 | None:intergenic | 25.0% |
| !!! | TCAGTATTTTTTTCTTCTGT+AGG | - | chr4.2:88313994-88314013 | None:intergenic | 25.0% |
| AAATAGTGAAAGCAAGGATA+AGG | + | chr4.2:88314032-88314051 | MS.gene79541:CDS | 30.0% | |
| AGCTGTTGAAATGATTTGAA+AGG | - | chr4.2:88314156-88314175 | None:intergenic | 30.0% | |
| ATATTTGTGAGCTTCATTTC+AGG | - | chr4.2:88314609-88314628 | None:intergenic | 30.0% | |
| GATTGAAAATGAGGATAAGA+AGG | + | chr4.2:88313924-88313943 | MS.gene79541:CDS | 30.0% | |
| GCTGTTGAAATGATTTGAAA+GGG | - | chr4.2:88314155-88314174 | None:intergenic | 30.0% | |
| TATTTGTGAGCTTCATTTCA+GGG | - | chr4.2:88314608-88314627 | None:intergenic | 30.0% | |
| TCAATGCAAATGTTGAAAGA+CGG | - | chr4.2:88314677-88314696 | None:intergenic | 30.0% | |
| TGAAATGAAGCTCACAAATA+TGG | + | chr4.2:88314608-88314627 | MS.gene79541:CDS | 30.0% | |
| TTAGATAAACCAAGACCTAA+AGG | - | chr4.2:88314318-88314337 | None:intergenic | 30.0% | |
| TTGCATTGAAGTTCAAAGAT+GGG | + | chr4.2:88314688-88314707 | MS.gene79541:CDS | 30.0% | |
| TTGGAGTAGATTTATTCTGT+TGG | - | chr4.2:88313645-88313664 | None:intergenic | 30.0% | |
| TTTGCATTGAAGTTCAAAGA+TGG | + | chr4.2:88314687-88314706 | MS.gene79541:CDS | 30.0% | |
| !!! | GTATTTTTTTCTTCTGTAGG+AGG | - | chr4.2:88313991-88314010 | None:intergenic | 30.0% |
| !!! | TCTTCTTCCTTATTTTCCTT+CGG | + | chr4.2:88314222-88314241 | MS.gene79541:CDS | 30.0% |
| AACTAGTGGAACAGAAAAGA+AGG | + | chr4.2:88314524-88314543 | MS.gene79541:CDS | 35.0% | |
| AATTTCCCTTAGACCTCATA+AGG | - | chr4.2:88314557-88314576 | None:intergenic | 35.0% | |
| ACTGAGAACAGTGATAAGAA+CGG | + | chr4.2:88314009-88314028 | MS.gene79541:CDS | 35.0% | |
| AGACAAAGTAAGTGAAAGCA+AGG | + | chr4.2:88314056-88314075 | MS.gene79541:CDS | 35.0% | |
| AGTAAGCGAAAGCAAAGATA+AGG | + | chr4.2:88314092-88314111 | MS.gene79541:CDS | 35.0% | |
| AGTAAGTGAAAGCAAGGATA+AGG | + | chr4.2:88314062-88314081 | MS.gene79541:CDS | 35.0% | |
| CTCACAAATATGGAGAAGAA+GGG | + | chr4.2:88314618-88314637 | MS.gene79541:CDS | 35.0% | |
| CTTACAGTCGTCAAAGAAAA+GGG | + | chr4.2:88313486-88313505 | MS.gene79541:CDS | 35.0% | |
| GATAATGAACAGAGTAAGGA+TGG | + | chr4.2:88313895-88313914 | MS.gene79541:CDS | 35.0% | |
| GGTAGATAATGAACAGAGTA+AGG | + | chr4.2:88313891-88313910 | MS.gene79541:CDS | 35.0% | |
| GTGAAAGTGAATGTAACTAG+TGG | + | chr4.2:88314510-88314529 | MS.gene79541:CDS | 35.0% | |
| TAAGAAGGAAGTTGCTGATA+AGG | + | chr4.2:88313939-88313958 | MS.gene79541:CDS | 35.0% | |
| TACTTCAAACAACGATGTTG+CGG | + | chr4.2:88313810-88313829 | MS.gene79541:CDS | 35.0% | |
| TGGACGTAAGATTGAAAATG+AGG | + | chr4.2:88313915-88313934 | MS.gene79541:CDS | 35.0% | |
| !! | AACAAATGATGGGTCTACTT+TGG | + | chr4.2:88314251-88314270 | MS.gene79541:CDS | 35.0% |
| !! | ACAAATGATGGGTCTACTTT+GGG | + | chr4.2:88314252-88314271 | MS.gene79541:CDS | 35.0% |
| !! | TGTTACTTTGACCATTCTTC+TGG | - | chr4.2:88313617-88313636 | None:intergenic | 35.0% |
| !!! | CTTCTTCCTTATTTTCCTTC+GGG | + | chr4.2:88314223-88314242 | MS.gene79541:CDS | 35.0% |
| AGCAATCAAAATGCCTTCAC+AGG | + | chr4.2:88314180-88314199 | MS.gene79541:CDS | 40.0% | |
| AGTCTTGAAATCCTCCACTA+TGG | - | chr4.2:88314715-88314734 | None:intergenic | 40.0% | |
| ATAAACCAAGACCTAAAGGC+TGG | - | chr4.2:88314314-88314333 | None:intergenic | 40.0% | |
| CCTTACAGTCGTCAAAGAAA+AGG | + | chr4.2:88313485-88313504 | MS.gene79541:CDS | 40.0% | |
| GAACGGAAATAGTGAAAGCA+AGG | + | chr4.2:88314026-88314045 | MS.gene79541:CDS | 40.0% | |
| GCTCACAAATATGGAGAAGA+AGG | + | chr4.2:88314617-88314636 | MS.gene79541:CDS | 40.0% | |
| TCGGGTCTACAACAAATGAT+GGG | + | chr4.2:88314241-88314260 | MS.gene79541:CDS | 40.0% | |
| TGTAGACCCGAAGGAAAATA+AGG | - | chr4.2:88314232-88314251 | None:intergenic | 40.0% | |
| TTATCTAACGCTGGAAGTTC+TGG | + | chr4.2:88314330-88314349 | MS.gene79541:CDS | 40.0% | |
| TTCGGGTCTACAACAAATGA+TGG | + | chr4.2:88314240-88314259 | MS.gene79541:CDS | 40.0% | |
| ! | CCTTTTCTTTGACGACTGTA+AGG | - | chr4.2:88313488-88313507 | None:intergenic | 40.0% |
| ! | TCTTCATCCTTAGCTTTCTC+TGG | - | chr4.2:88313745-88313764 | None:intergenic | 40.0% |
| ! | TTGTTTGAGTTTGCAGATGG+AGG | + | chr4.2:88314462-88314481 | MS.gene79541:CDS | 40.0% |
| !! | ATCATTTGTTGTAGACCCGA+AGG | - | chr4.2:88314241-88314260 | None:intergenic | 40.0% |
| !! | GTGTTGTTTGAGTTTGCAGA+TGG | + | chr4.2:88314459-88314478 | MS.gene79541:CDS | 40.0% |
| !!! | AGGTTCTTTTTCGATCTCAC+TGG | - | chr4.2:88313971-88313990 | None:intergenic | 40.0% |
| !!! | AGTTCTGGTTTTGGAACATC+AGG | + | chr4.2:88314345-88314364 | MS.gene79541:CDS | 40.0% |
| ACTGCTATCACAGCACACAA+GGG | + | chr4.2:88314732-88314751 | MS.gene79541:CDS | 45.0% | |
| AGTAGTAGCTTCACCAGACT+TGG | - | chr4.2:88313713-88313732 | None:intergenic | 45.0% | |
| ATGGGTCTACTTTGGGTAGT+GGG | + | chr4.2:88314259-88314278 | MS.gene79541:CDS | 45.0% | |
| CAGGAAGTCGTTGTTGAAAC+CGG | + | chr4.2:88314399-88314418 | MS.gene79541:CDS | 45.0% | |
| CCTTAGACCTCATAAGGACT+CGG | - | chr4.2:88314551-88314570 | None:intergenic | 45.0% | |
| CGAGTCCTTATGAGGTCTAA+GGG | + | chr4.2:88314549-88314568 | MS.gene79541:CDS | 45.0% | |
| CTTAGACCTCATAAGGACTC+GGG | - | chr4.2:88314550-88314569 | None:intergenic | 45.0% | |
| GACTTTCAAGAAAGCCAGTG+AGG | + | chr4.2:88313579-88313598 | MS.gene79541:CDS | 45.0% | |
| GGTCTTGGTTTATCTAACGC+TGG | + | chr4.2:88314321-88314340 | MS.gene79541:CDS | 45.0% | |
| GGTTCTTGCAACCAGAAGAA+TGG | + | chr4.2:88313603-88313622 | MS.gene79541:CDS | 45.0% | |
| GTAGATTTGTCCTCAACCTC+AGG | - | chr4.2:88313793-88313812 | None:intergenic | 45.0% | |
| GTTCAAAGATGGGTCCATAG+TGG | + | chr4.2:88314698-88314717 | MS.gene79541:CDS | 45.0% | |
| TCATCTTCCTCGTCGTCAAT+AGG | - | chr4.2:88313541-88313560 | None:intergenic | 45.0% | |
| TGAAACCGGTGAAGAAAACG+AGG | + | chr4.2:88314413-88314432 | MS.gene79541:CDS | 45.0% | |
| TTCCAAGACTGAAACACTGC+AGG | + | chr4.2:88314380-88314399 | MS.gene79541:CDS | 45.0% | |
| TTCCTGCAGTGTTTCAGTCT+TGG | - | chr4.2:88314385-88314404 | None:intergenic | 45.0% | |
| TTGAAACCTGACCAGCCTTT+AGG | + | chr4.2:88314300-88314319 | MS.gene79541:CDS | 45.0% | |
| TTGAGTTTGCAGATGGAGGT+TGG | + | chr4.2:88314466-88314485 | MS.gene79541:CDS | 45.0% | |
| TTTCAAGAAAGCCAGTGAGG+AGG | + | chr4.2:88313582-88313601 | MS.gene79541:CDS | 45.0% | |
| ! | AGTGGGTCCGGTTCTATTTT+TGG | + | chr4.2:88314276-88314295 | MS.gene79541:CDS | 45.0% |
| ! | CACTTCCTCGTTTTCTTCAC+CGG | - | chr4.2:88314421-88314440 | None:intergenic | 45.0% |
| !! | ACTGGCTTTCTTGAAAGTCC+CGG | - | chr4.2:88313578-88313597 | None:intergenic | 45.0% |
| !!! | AACGCTGGAAGTTCTGGTTT+TGG | + | chr4.2:88314336-88314355 | MS.gene79541:CDS | 45.0% |
| AACGCAGCCAGAGAAAGCTA+AGG | + | chr4.2:88313735-88313754 | MS.gene79541:CDS | 50.0% | |
| AAGACGGTCTTTCCCTTCAG+TGG | - | chr4.2:88314661-88314680 | None:intergenic | 50.0% | |
| AATGCCTTCACAGGTCTTGC+TGG | + | chr4.2:88314189-88314208 | MS.gene79541:CDS | 50.0% | |
| ACTGAATCCACTGCCAAGTC+TGG | + | chr4.2:88313697-88313716 | MS.gene79541:CDS | 50.0% | |
| AGACACTCCTATTGACGACG+AGG | + | chr4.2:88313531-88313550 | MS.gene79541:CDS | 50.0% | |
| AGGTTGGAAGGAACGTGGAA+AGG | + | chr4.2:88314482-88314501 | MS.gene79541:CDS | 50.0% | |
| ATGCCTTCACAGGTCTTGCT+GGG | + | chr4.2:88314190-88314209 | MS.gene79541:CDS | 50.0% | |
| CAAAGATGGGTCCATAGTGG+AGG | + | chr4.2:88314701-88314720 | MS.gene79541:CDS | 50.0% | |
| CCGAGTCCTTATGAGGTCTA+AGG | + | chr4.2:88314548-88314567 | MS.gene79541:CDS | 50.0% | |
| CGGTGAAGAAAACGAGGAAG+TGG | + | chr4.2:88314419-88314438 | MS.gene79541:CDS | 50.0% | |
| CGTATACCAGCGAAAGGGTT+TGG | - | chr4.2:88313664-88313683 | None:intergenic | 50.0% | |
| CGTCAAAGAAAAGGGCTGCT+GGG | + | chr4.2:88313494-88313513 | MS.gene79541:CDS | 50.0% | |
| CTATCACAGCACACAAGGGT+GGG | + | chr4.2:88314736-88314755 | MS.gene79541:CDS | 50.0% | |
| CTTGAAAGTCCCGGCTTCAA+GGG | - | chr4.2:88313569-88313588 | None:intergenic | 50.0% | |
| GACTGCTATCACAGCACACA+AGG | + | chr4.2:88314731-88314750 | MS.gene79541:CDS | 50.0% | |
| GAGCGACAGTGACAACTCTA+AGG | + | chr4.2:88313870-88313889 | MS.gene79541:CDS | 50.0% | |
| GATGGGTCTACTTTGGGTAG+TGG | + | chr4.2:88314258-88314277 | MS.gene79541:CDS | 50.0% | |
| GCAAGCGTATACCAGCGAAA+GGG | - | chr4.2:88313669-88313688 | None:intergenic | 50.0% | |
| GGACAGAAACAATGCAGGCA+AGG | + | chr4.2:88313831-88313850 | MS.gene79541:CDS | 50.0% | |
| GGTTGGAAGGAACGTGGAAA+GGG | + | chr4.2:88314483-88314502 | MS.gene79541:CDS | 50.0% | |
| GTTGCGGACAGAAACAATGC+AGG | + | chr4.2:88313826-88313845 | MS.gene79541:CDS | 50.0% | |
| GTTTGCAGATGGAGGTTGGA+AGG | + | chr4.2:88314470-88314489 | MS.gene79541:CDS | 50.0% | |
| TATCACAGCACACAAGGGTG+GGG | + | chr4.2:88314737-88314756 | MS.gene79541:CDS | 50.0% | |
| TCGTCAAAGAAAAGGGCTGC+TGG | + | chr4.2:88313493-88313512 | MS.gene79541:CDS | 50.0% | |
| TCTACTCCAAACCCTTTCGC+TGG | + | chr4.2:88313655-88313674 | MS.gene79541:CDS | 50.0% | |
| TCTTGAAAGTCCCGGCTTCA+AGG | - | chr4.2:88313570-88313589 | None:intergenic | 50.0% | |
| ! | ACCTTTGCATGTGCCACTGA+AGG | + | chr4.2:88314645-88314664 | MS.gene79541:CDS | 50.0% |
| ! | CCTTTGCATGTGCCACTGAA+GGG | + | chr4.2:88314646-88314665 | MS.gene79541:CDS | 50.0% |
| ! | GACTTGGCAGTGGATTCAGT+AGG | - | chr4.2:88313697-88313716 | None:intergenic | 50.0% |
| !! | CGTCGTCAATAGGAGTGTCT+CGG | - | chr4.2:88313531-88313550 | None:intergenic | 50.0% |
| !! | GTCGTCAATAGGAGTGTCTC+GGG | - | chr4.2:88313530-88313549 | None:intergenic | 50.0% |
| !! | TCTACTTTGGGTAGTGGGTC+CGG | + | chr4.2:88314264-88314283 | MS.gene79541:CDS | 50.0% |
| AAAGGGCCACCTTCAGCAGT+AGG | - | chr4.2:88314138-88314157 | None:intergenic | 55.0% | |
| ACCTCAGGAGCTTTGCTCTC+TGG | - | chr4.2:88313778-88313797 | None:intergenic | 55.0% | |
| AGAAGGCCCGAGTCCTTATG+AGG | + | chr4.2:88314541-88314560 | MS.gene79541:CDS | 55.0% | |
| AGACCCAGCAAGACCTGTGA+AGG | - | chr4.2:88314196-88314215 | None:intergenic | 55.0% | |
| AGCTTCACCAGACTTGGCAG+TGG | - | chr4.2:88313707-88313726 | None:intergenic | 55.0% | |
| AGTGACGAGCCTACTGCTGA+AGG | + | chr4.2:88314126-88314145 | MS.gene79541:CDS | 55.0% | |
| CAATGCAGGCAAGGAGCTTG+CGG | + | chr4.2:88313840-88313859 | MS.gene79541:CDS | 55.0% | |
| CCCTTCAGTGGCACATGCAA+AGG | - | chr4.2:88314649-88314668 | None:intergenic | 55.0% | |
| CCTGACCAGCCTTTAGGTCT+TGG | + | chr4.2:88314306-88314325 | MS.gene79541:CDS | 55.0% | |
| GAAGCCTTGGGAGAGTTCTC+TGG | - | chr4.2:88314783-88314802 | None:intergenic | 55.0% | |
| GACTCCAGAGAACTCTCCCA+AGG | + | chr4.2:88314776-88314795 | MS.gene79541:CDS | 55.0% | |
| GAGCAAAGCTCCTGAGGTTG+AGG | + | chr4.2:88313780-88313799 | MS.gene79541:CDS | 55.0% | |
| GATGGAGGTTGGAAGGAACG+TGG | + | chr4.2:88314477-88314496 | MS.gene79541:CDS | 55.0% | |
| GCTATCACAGCACACAAGGG+TGG | + | chr4.2:88314735-88314754 | MS.gene79541:CDS | 55.0% | |
| GGCAAGCGTATACCAGCGAA+AGG | - | chr4.2:88313670-88313689 | None:intergenic | 55.0% | |
| GGTTGCAAGAACCTCCTCAC+TGG | - | chr4.2:88313596-88313615 | None:intergenic | 55.0% | |
| TTCACAGGTCTTGCTGGGTC+TGG | + | chr4.2:88314195-88314214 | MS.gene79541:CDS | 55.0% | |
| ! | CCAAGACCTAAAGGCTGGTC+AGG | - | chr4.2:88314309-88314328 | None:intergenic | 55.0% |
| ! | GCAGTGGATTCAGTAGGAGC+AGG | - | chr4.2:88313691-88313710 | None:intergenic | 55.0% |
| AGGCAAGGAGCTTGCGGAGA+AGG | + | chr4.2:88313846-88313865 | MS.gene79541:CDS | 60.0% | |
| ATGACGCTGCCCTTGAAGCC+GGG | + | chr4.2:88313557-88313576 | MS.gene79541:CDS | 60.0% | |
| GACGAGCCTACTGCTGAAGG+TGG | + | chr4.2:88314129-88314148 | MS.gene79541:CDS | 60.0% | |
| GATGACGCTGCCCTTGAAGC+CGG | + | chr4.2:88313556-88313575 | MS.gene79541:CDS | 60.0% | |
| GCCAGAGAGCAAAGCTCCTG+AGG | + | chr4.2:88313774-88313793 | MS.gene79541:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 88313466 | 88314812 | 88313466 | ID=MS.gene79541 |
| chr4.2 | mRNA | 88313466 | 88314812 | 88313466 | ID=MS.gene79541.t1;Parent=MS.gene79541 |
| chr4.2 | exon | 88313466 | 88314812 | 88313466 | ID=MS.gene79541.t1.exon1;Parent=MS.gene79541.t1 |
| chr4.2 | CDS | 88313466 | 88314812 | 88313466 | ID=cds.MS.gene79541.t1;Parent=MS.gene79541.t1 |
| Gene Sequence |
| Protein sequence |
