Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79785.t1 | KEH15930.1 | 83.5 | 85 | 14 | 0 | 50 | 134 | 1 | 85 | 8.30E-31 | 143.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79785.t1 | Q8W593 | 52.9 | 121 | 42 | 2 | 50 | 155 | 168 | 288 | 1.3e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79785.t1 | A0A072TQV8 | 83.5 | 85 | 14 | 0 | 50 | 134 | 1 | 85 | 6.0e-31 | 143.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051332 | MS.gene79785 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene05308 | MS.gene79785 | 0.802479 | 5.50E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene79785 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene79785 | 0.808486 | 3.02E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene79785 | 0.824463 | 7.96E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene79785 | 0.806866 | 6.68E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene79785 | 0.800193 | 1.62E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79785.t1 | MTR_0430s0010 | 83.529 | 85 | 14 | 0 | 50 | 134 | 1 | 85 | 2.69e-45 | 144 |
| MS.gene79785.t1 | MTR_3g110185 | 51.701 | 147 | 33 | 1 | 44 | 152 | 633 | 779 | 2.66e-37 | 136 |
| MS.gene79785.t1 | MTR_4g039890 | 51.408 | 142 | 36 | 1 | 44 | 152 | 65 | 206 | 6.40e-37 | 128 |
| MS.gene79785.t1 | MTR_8g102980 | 43.056 | 144 | 44 | 1 | 39 | 144 | 154 | 297 | 1.51e-28 | 108 |
| MS.gene79785.t1 | MTR_8g102980 | 43.056 | 144 | 44 | 1 | 39 | 144 | 154 | 297 | 1.94e-28 | 108 |
| MS.gene79785.t1 | MTR_8g009510 | 97.959 | 49 | 1 | 0 | 1 | 49 | 1 | 49 | 3.04e-26 | 104 |
| MS.gene79785.t1 | MTR_6g087120 | 44.030 | 134 | 37 | 1 | 49 | 144 | 165 | 298 | 3.23e-26 | 102 |
| MS.gene79785.t1 | MTR_2g023500 | 37.762 | 143 | 51 | 1 | 44 | 148 | 95 | 237 | 6.18e-22 | 90.1 |
| MS.gene79785.t1 | MTR_4g132260 | 32.414 | 145 | 60 | 1 | 38 | 144 | 83 | 227 | 6.58e-20 | 84.3 |
| MS.gene79785.t1 | MTR_4g132270 | 38.144 | 97 | 60 | 0 | 38 | 134 | 83 | 179 | 1.34e-19 | 83.6 |
| MS.gene79785.t1 | MTR_4g132270 | 31.724 | 145 | 61 | 1 | 38 | 144 | 106 | 250 | 1.62e-19 | 84.0 |
| MS.gene79785.t1 | MTR_7g451010 | 87.755 | 49 | 6 | 0 | 1 | 49 | 1 | 49 | 5.44e-16 | 75.1 |
| MS.gene79785.t1 | MTR_8g105580 | 42.857 | 98 | 37 | 3 | 1 | 84 | 1 | 93 | 1.43e-14 | 70.9 |
| MS.gene79785.t1 | MTR_8g105580 | 42.857 | 98 | 37 | 3 | 1 | 84 | 1 | 93 | 1.59e-14 | 70.9 |
| MS.gene79785.t1 | MTR_1g032550 | 69.388 | 49 | 10 | 1 | 1 | 49 | 1 | 44 | 6.78e-14 | 68.9 |
| MS.gene79785.t1 | MTR_5g009150 | 38.095 | 105 | 47 | 5 | 4 | 93 | 1 | 102 | 2.52e-12 | 64.3 |
| MS.gene79785.t1 | MTR_8g099550 | 45.946 | 74 | 28 | 2 | 4 | 68 | 1 | 71 | 4.98e-12 | 63.5 |
| MS.gene79785.t1 | MTR_4g098920 | 65.217 | 46 | 13 | 1 | 4 | 49 | 1 | 43 | 1.20e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79785.t1 | AT1G67280 | 52.459 | 122 | 43 | 2 | 49 | 155 | 79 | 200 | 1.88e-31 | 114 |
| MS.gene79785.t1 | AT1G67280 | 52.459 | 122 | 43 | 2 | 49 | 155 | 167 | 288 | 6.49e-31 | 115 |
| MS.gene79785.t1 | AT1G11840 | 53.846 | 91 | 42 | 0 | 44 | 134 | 91 | 181 | 3.89e-27 | 102 |
| MS.gene79785.t1 | AT1G11840 | 42.446 | 139 | 42 | 1 | 44 | 144 | 91 | 229 | 4.84e-27 | 103 |
| MS.gene79785.t1 | AT1G11840 | 42.446 | 139 | 42 | 1 | 44 | 144 | 91 | 229 | 4.84e-27 | 103 |
| MS.gene79785.t1 | AT1G11840 | 42.446 | 139 | 42 | 1 | 44 | 144 | 91 | 229 | 4.84e-27 | 103 |
| MS.gene79785.t1 | AT1G11840 | 42.446 | 139 | 42 | 1 | 44 | 144 | 91 | 229 | 4.84e-27 | 103 |
| MS.gene79785.t1 | AT1G11840 | 42.446 | 139 | 42 | 1 | 44 | 144 | 130 | 268 | 7.13e-27 | 103 |
| MS.gene79785.t1 | AT3G60190 | 79.592 | 49 | 10 | 0 | 1 | 49 | 1 | 49 | 5.42e-20 | 86.7 |
| MS.gene79785.t1 | AT1G14830 | 44.444 | 99 | 35 | 4 | 1 | 84 | 1 | 94 | 1.65e-14 | 70.9 |
| MS.gene79785.t1 | AT2G44590 | 76.087 | 46 | 9 | 2 | 4 | 49 | 1 | 44 | 9.19e-14 | 68.6 |
| MS.gene79785.t1 | AT2G44590 | 76.087 | 46 | 9 | 2 | 4 | 49 | 1 | 44 | 9.67e-14 | 68.6 |
| MS.gene79785.t1 | AT2G44590 | 76.087 | 46 | 9 | 2 | 4 | 49 | 1 | 44 | 9.95e-14 | 68.6 |
| MS.gene79785.t1 | AT3G61760 | 38.947 | 95 | 41 | 3 | 4 | 84 | 1 | 92 | 6.06e-13 | 66.2 |
| MS.gene79785.t1 | AT3G61760 | 38.947 | 95 | 41 | 3 | 4 | 84 | 1 | 92 | 6.09e-13 | 66.2 |
| MS.gene79785.t1 | AT3G61760 | 38.947 | 95 | 41 | 3 | 4 | 84 | 1 | 92 | 6.09e-13 | 66.2 |
| MS.gene79785.t1 | AT5G42080 | 40.625 | 96 | 39 | 4 | 4 | 84 | 1 | 93 | 1.06e-12 | 65.5 |
| MS.gene79785.t1 | AT5G42080 | 40.625 | 96 | 39 | 4 | 4 | 84 | 1 | 93 | 1.06e-12 | 65.5 |
| MS.gene79785.t1 | AT5G42080 | 40.625 | 96 | 39 | 4 | 4 | 84 | 1 | 93 | 1.09e-12 | 65.5 |
| MS.gene79785.t1 | AT5G42080 | 40.625 | 96 | 39 | 4 | 4 | 84 | 1 | 93 | 1.30e-12 | 65.1 |
Find 36 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTGTGTAGCTTATTTAT+TGG | 0.225655 | 6.2:-72713022 | MS.gene79785:CDS |
| TTGAAGTTCCTAGTGGTTAT+AGG | 0.278164 | 6.2:-72713419 | MS.gene79785:CDS |
| GGTTATAGGTTTGAGCGTTT+GGG | 0.286222 | 6.2:-72713405 | MS.gene79785:CDS |
| TGGTTATAGGTTTGAGCGTT+TGG | 0.300334 | 6.2:-72713406 | MS.gene79785:CDS |
| CTACACACTTGTCATATAAA+TGG | 0.309366 | 6.2:+72713034 | None:intergenic |
| GTGTTTGAACAGATTGCAAT+AGG | 0.372974 | 6.2:-72713081 | MS.gene79785:intron |
| TTGAAGCATCACTTTGCATA+AGG | 0.376818 | 6.2:+72713362 | None:intergenic |
| CGAGTTTAGTACAAGCTTGT+TGG | 0.379634 | 6.2:+72715316 | None:intergenic |
| CTTCTTCGTGATGACGACTA+TGG | 0.382344 | 6.2:-72715367 | None:intergenic |
| TGAAGCATCACTTTGCATAA+GGG | 0.403755 | 6.2:+72713363 | None:intergenic |
| TGTACTAAACTCGGTGACTA+TGG | 0.413767 | 6.2:-72715306 | MS.gene79785:CDS |
| ACGACTATGGAAAGCTTAAT+CGG | 0.423389 | 6.2:-72715354 | MS.gene79785:CDS |
| CGTCGCCGTCGTCGGTGGTC+AGG | 0.436482 | 6.2:-72715232 | MS.gene79785:intron |
| TGTTAATTTCAAAGGCTGTT+GGG | 0.439974 | 6.2:-72713207 | MS.gene79785:intron |
| TTGTTAATTTCAAAGGCTGT+TGG | 0.447914 | 6.2:-72713208 | MS.gene79785:intron |
| TATAAAGTTGACATCTAAGT+AGG | 0.468177 | 6.2:-72712870 | None:intergenic |
| GAACCATCTTTGACAGGCTC+CGG | 0.479569 | 6.2:+72713459 | None:intergenic |
| CTTCCTTCCGTCGCCGTCGT+CGG | 0.492244 | 6.2:-72715240 | MS.gene79785:CDS |
| ATTGTAGAACCATCTTTGAC+AGG | 0.495723 | 6.2:+72713453 | None:intergenic |
| CTTTACAAGATTTACCGTCT+TGG | 0.506222 | 6.2:+72713509 | None:intergenic |
| TATGGAAAGCTTAATCGGCT+TGG | 0.517895 | 6.2:-72715349 | MS.gene79785:CDS |
| TTGCATAAGGGTTCGCGAGT+AGG | 0.520825 | 6.2:+72713375 | None:intergenic |
| CAAGACGGTAAATCTTGTAA+AGG | 0.530846 | 6.2:-72713508 | MS.gene79785:CDS |
| CCACCGACGACGGCGACGGA+AGG | 0.540811 | 6.2:+72715237 | None:intergenic |
| GGGAAAGGTTACGAGAGAAC+CGG | 0.551287 | 6.2:-72713478 | MS.gene79785:CDS |
| GAACCGGAGCCTGTCAAAGA+TGG | 0.553158 | 6.2:-72713462 | MS.gene79785:CDS |
| CGCTCAAACCTATAACCACT+AGG | 0.554682 | 6.2:+72713411 | None:intergenic |
| CAACAAGCTTGTACTAAACT+CGG | 0.559054 | 6.2:-72715315 | MS.gene79785:CDS |
| CCTTCCGTCGCCGTCGTCGG+TGG | 0.566292 | 6.2:-72715237 | MS.gene79785:CDS |
| GTTATAGGTTTGAGCGTTTG+GGG | 0.588256 | 6.2:-72713404 | MS.gene79785:CDS |
| CTGACCACCGACGACGGCGA+CGG | 0.603647 | 6.2:+72715233 | None:intergenic |
| CCTCAGGGTTGACTATCTTG+TGG | 0.618953 | 6.2:+72713173 | None:intergenic |
| CGATACCTGACCACCGACGA+CGG | 0.623829 | 6.2:+72715227 | None:intergenic |
| TGCAAAGTGATGCTTCAAGT+AGG | 0.661452 | 6.2:-72713357 | MS.gene79785:CDS |
| ACTAAACTCGGTGACTATGG+CGG | 0.703039 | 6.2:-72715303 | MS.gene79785:CDS |
| CCACAAGATAGTCAACCCTG+AGG | 0.744035 | 6.2:-72713173 | MS.gene79785:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATGAAATTCAATATT+TGG | + | chr6.2:72713043-72713062 | None:intergenic | 10.0% |
| !! | AAAAAACGTAAAAATGAAAA+AGG | + | chr6.2:72713200-72713219 | None:intergenic | 15.0% |
| !! | TTAATTGAATCATGAAAAAT+GGG | - | chr6.2:72714475-72714494 | MS.gene79785:intron | 15.0% |
| !!! | TGATTTTTTTCTATATACTT+TGG | - | chr6.2:72714071-72714090 | MS.gene79785:intron | 15.0% |
| !! | AAAAATCATATAAAACCTCA+GGG | + | chr6.2:72715073-72715092 | None:intergenic | 20.0% |
| !! | AAAATAAGTTGTTTATCTGA+AGG | + | chr6.2:72713277-72713296 | None:intergenic | 20.0% |
| !! | AAATCTTGTAAAGGAAAAAA+GGG | - | chr6.2:72714729-72714748 | MS.gene79785:intron | 20.0% |
| !! | AACATCCATATGAAAAATAA+AGG | + | chr6.2:72715290-72715309 | None:intergenic | 20.0% |
| !! | AATGAAATTCAATATTTGGA+AGG | + | chr6.2:72713039-72713058 | None:intergenic | 20.0% |
| !! | ATATTAAATCATCACTAGTT+TGG | - | chr6.2:72714615-72714634 | MS.gene79785:intron | 20.0% |
| !! | GATCAATTAACAAAATCAAA+AGG | + | chr6.2:72714587-72714606 | None:intergenic | 20.0% |
| !! | GTTAATTGAATCATGAAAAA+TGG | - | chr6.2:72714474-72714493 | MS.gene79785:intron | 20.0% |
| !! | TAAAAATCATATAAAACCTC+AGG | + | chr6.2:72715074-72715093 | None:intergenic | 20.0% |
| !! | TAAATCTTGTAAAGGAAAAA+AGG | - | chr6.2:72714728-72714747 | MS.gene79785:intron | 20.0% |
| !! | TTAGTTATGTTAATTGATCA+TGG | - | chr6.2:72714522-72714541 | MS.gene79785:intron | 20.0% |
| !!! | ATTTGTTATTTTGTGTGTTT+AGG | - | chr6.2:72713686-72713705 | MS.gene79785:intron | 20.0% |
| !!! | GGTTTTATATGATTTTTACA+TGG | - | chr6.2:72715076-72715095 | MS.gene79785:intron | 20.0% |
| !!! | TAGTAATTTATTTTGGTTTG+TGG | - | chr6.2:72713236-72713255 | MS.gene79785:intron | 20.0% |
| ! | AAACAAGTATCTTACAATAG+TGG | - | chr6.2:72714158-72714177 | MS.gene79785:intron | 25.0% |
| ! | AATCTTGTAAAGGAAAAAAG+GGG | - | chr6.2:72714730-72714749 | MS.gene79785:intron | 25.0% |
| ! | ACTTTGGTTATGTATATTCA+TGG | - | chr6.2:72714087-72714106 | MS.gene79785:intron | 25.0% |
| ! | ATTAATTGAATCATGGCAAA+TGG | - | chr6.2:72714388-72714407 | MS.gene79785:intron | 25.0% |
| ! | ATTTGCCATGATTCAATTAA+TGG | + | chr6.2:72714389-72714408 | None:intergenic | 25.0% |
| ! | CTTGTCTTTGTTAATTTCAA+AGG | - | chr6.2:72715013-72715032 | MS.gene79785:intron | 25.0% |
| ! | TTAATTGAATCATGGCAAAT+GGG | - | chr6.2:72714389-72714408 | MS.gene79785:intron | 25.0% |
| ! | TTGTTCCATTAATTGAATCA+TGG | - | chr6.2:72714381-72714400 | MS.gene79785:intron | 25.0% |
| !! | ATTATTTTCATGAACTCTTC+AGG | + | chr6.2:72713407-72713426 | None:intergenic | 25.0% |
| !! | TTTTCTTGTTAAGTGAATCA+TGG | - | chr6.2:72714295-72714314 | MS.gene79785:intron | 25.0% |
| !! | TTTTTCATATGGATGTTGTT+AGG | - | chr6.2:72715293-72715312 | MS.gene79785:CDS | 25.0% |
| !!! | AAAAATAAAGGCACTAAAAC+AGG | + | chr6.2:72715278-72715297 | None:intergenic | 25.0% |
| !!! | TAGTGCCTTTATTTTTCATA+TGG | - | chr6.2:72715282-72715301 | MS.gene79785:CDS | 25.0% |
| AATCAAAAGGCAAATGATTC+AGG | + | chr6.2:72714574-72714593 | None:intergenic | 30.0% | |
| ACAACACAAATTCATGTACA+TGG | + | chr6.2:72714237-72714256 | None:intergenic | 30.0% | |
| CAAGTGTGTAGCTTATTTAT+TGG | - | chr6.2:72715206-72715225 | MS.gene79785:intron | 30.0% | |
| CTACACACTTGTCATATAAA+TGG | + | chr6.2:72715197-72715216 | None:intergenic | 30.0% | |
| GGTTAAGTTATGAGAAAGAA+GGG | - | chr6.2:72714324-72714343 | MS.gene79785:intron | 30.0% | |
| TACATACTTTCGACATACAT+AGG | + | chr6.2:72713894-72713913 | None:intergenic | 30.0% | |
| TATGTGTACGTGTATGTTAT+GGG | - | chr6.2:72713792-72713811 | MS.gene79785:intron | 30.0% | |
| TGTTAATTTCAAAGGCTGTT+GGG | - | chr6.2:72715021-72715040 | MS.gene79785:intron | 30.0% | |
| TTAAGTGAATCATGGCAAAT+GGG | - | chr6.2:72714303-72714322 | MS.gene79785:intron | 30.0% | |
| TTATGTGTACGTGTATGTTA+TGG | - | chr6.2:72713791-72713810 | MS.gene79785:intron | 30.0% | |
| TTGAGACATAAGTTAAGAAG+TGG | + | chr6.2:72714036-72714055 | None:intergenic | 30.0% | |
| TTGTTAATTTCAAAGGCTGT+TGG | - | chr6.2:72715020-72715039 | MS.gene79785:intron | 30.0% | |
| TTTGTTGATGTATCAGTTCA+AGG | + | chr6.2:72714141-72714160 | None:intergenic | 30.0% | |
| ! | TGAGTTGTTATTCATGATGT+GGG | - | chr6.2:72715243-72715262 | MS.gene79785:CDS | 30.0% |
| ! | TTCGACACATGTAAGTTTTA+TGG | - | chr6.2:72713622-72713641 | MS.gene79785:intron | 30.0% |
| !! | AAATGGGTTATGAGAAAGAA+CGG | - | chr6.2:72714405-72714424 | MS.gene79785:intron | 30.0% |
| !! | GCAATTTTTAGACACCATTT+TGG | + | chr6.2:72714192-72714211 | None:intergenic | 30.0% |
| !!! | TACACTCACTTTTTCATAGA+AGG | + | chr6.2:72714917-72714936 | None:intergenic | 30.0% |
| ACGACTATGGAAAGCTTAAT+CGG | - | chr6.2:72712874-72712893 | MS.gene79785:CDS | 35.0% | |
| ATTGTAGAACCATCTTTGAC+AGG | + | chr6.2:72714778-72714797 | None:intergenic | 35.0% | |
| CAACAAGCTTGTACTAAACT+CGG | - | chr6.2:72712913-72712932 | MS.gene79785:intron | 35.0% | |
| CAAGACGGTAAATCTTGTAA+AGG | - | chr6.2:72714720-72714739 | MS.gene79785:intron | 35.0% | |
| CTATGAAATTCTGACACTTG+AGG | - | chr6.2:72713442-72713461 | MS.gene79785:CDS | 35.0% | |
| CTTTACAAGATTTACCGTCT+TGG | + | chr6.2:72714722-72714741 | None:intergenic | 35.0% | |
| GGCAATAAATGAAAGAGCTT+TGG | - | chr6.2:72713588-72713607 | MS.gene79785:intron | 35.0% | |
| GGGTTAAGTTATGAGAAAGA+AGG | - | chr6.2:72714323-72714342 | MS.gene79785:intron | 35.0% | |
| GTGTTTGAACAGATTGCAAT+AGG | - | chr6.2:72715147-72715166 | MS.gene79785:intron | 35.0% | |
| GTTAAGTGAATCATGGCAAA+TGG | - | chr6.2:72714302-72714321 | MS.gene79785:intron | 35.0% | |
| TGACATGCATTATACATTCG+TGG | + | chr6.2:72715106-72715125 | None:intergenic | 35.0% | |
| TGTAAAGGAAAAAAGGGGAA+AGG | - | chr6.2:72714735-72714754 | MS.gene79785:intron | 35.0% | |
| TTCTCCTTTGTGTTTGATTG+TGG | - | chr6.2:72713545-72713564 | MS.gene79785:intron | 35.0% | |
| TTGAAGTTCCTAGTGGTTAT+AGG | - | chr6.2:72714809-72714828 | MS.gene79785:intron | 35.0% | |
| ! | AATTCTGACACTTGAGGTTT+TGG | - | chr6.2:72713448-72713467 | MS.gene79785:CDS | 35.0% |
| ! | ATAAATGAAAGAGCTTTGGC+TGG | - | chr6.2:72713592-72713611 | MS.gene79785:intron | 35.0% |
| ! | ATTCTGACACTTGAGGTTTT+GGG | - | chr6.2:72713449-72713468 | MS.gene79785:CDS | 35.0% |
| ! | CTGGTTTGAGATAAGTGATA+AGG | - | chr6.2:72713480-72713499 | MS.gene79785:CDS | 35.0% |
| ! | GCTTTTATTGAAGTTCCTAG+TGG | - | chr6.2:72714802-72714821 | MS.gene79785:intron | 35.0% |
| ! | GTGAGTTGTTATTCATGATG+TGG | - | chr6.2:72715242-72715261 | MS.gene79785:CDS | 35.0% |
| ! | GTTTGAGATAAGTGATAAGG+AGG | - | chr6.2:72713483-72713502 | MS.gene79785:CDS | 35.0% |
| ! | TAGGTGACTTTTGTCAATCT+AGG | - | chr6.2:72715312-72715331 | MS.gene79785:CDS | 35.0% |
| ! | TGAAGCATCACTTTGCATAA+GGG | + | chr6.2:72714868-72714887 | None:intergenic | 35.0% |
| ! | TTGAAGCATCACTTTGCATA+AGG | + | chr6.2:72714869-72714888 | None:intergenic | 35.0% |
| !! | GATTTTTCAGATTGCCAAGA+CGG | - | chr6.2:72714705-72714724 | MS.gene79785:intron | 35.0% |
| !!! | ACAGCACTTTTTCTTCTCTT+TGG | - | chr6.2:72712959-72712978 | MS.gene79785:intron | 35.0% |
| !!! | CAGCACTTTTTCTTCTCTTT+GGG | - | chr6.2:72712960-72712979 | MS.gene79785:intron | 35.0% |
| AAGTGATAAGGAGGAGTTAG+AGG | - | chr6.2:72713492-72713511 | MS.gene79785:CDS | 40.0% | |
| ACAGAGTTCAGGGAAATCTT+CGG | - | chr6.2:72713114-72713133 | MS.gene79785:intron | 40.0% | |
| ATTGTGGCTTGAAAAGCTTG+AGG | - | chr6.2:72713561-72713580 | MS.gene79785:intron | 40.0% | |
| CAAGCCACAATCAAACACAA+AGG | + | chr6.2:72713552-72713571 | None:intergenic | 40.0% | |
| CATGCATTATACATTCGTGG+AGG | + | chr6.2:72715103-72715122 | None:intergenic | 40.0% | |
| CGAGTTTAGTACAAGCTTGT+TGG | + | chr6.2:72712915-72712934 | None:intergenic | 40.0% | |
| CTCTGTACATGAATGTGTGT+TGG | - | chr6.2:72714211-72714230 | MS.gene79785:intron | 40.0% | |
| GGTTATAGGTTTGAGCGTTT+GGG | - | chr6.2:72714823-72714842 | MS.gene79785:intron | 40.0% | |
| GTATCTTACAATAGTGGCCT+TGG | - | chr6.2:72714164-72714183 | MS.gene79785:intron | 40.0% | |
| GTTATAGGTTTGAGCGTTTG+GGG | - | chr6.2:72714824-72714843 | MS.gene79785:intron | 40.0% | |
| TATGGAAAGCTTAATCGGCT+TGG | - | chr6.2:72712879-72712898 | MS.gene79785:CDS | 40.0% | |
| TGCAAAGTGATGCTTCAAGT+AGG | - | chr6.2:72714871-72714890 | MS.gene79785:intron | 40.0% | |
| TGGTTATAGGTTTGAGCGTT+TGG | - | chr6.2:72714822-72714841 | MS.gene79785:intron | 40.0% | |
| ! | GACTTTTTACCTAGAGGATC+AGG | - | chr6.2:72713160-72713179 | MS.gene79785:intron | 40.0% |
| ! | TAGACACCATTTTGGATCCA+AGG | + | chr6.2:72714184-72714203 | None:intergenic | 40.0% |
| ! | TGTACTAAACTCGGTGACTA+TGG | - | chr6.2:72712922-72712941 | MS.gene79785:intron | 40.0% |
| ! | TTCAGGGAAATCTTCGGTTT+TGG | - | chr6.2:72713120-72713139 | MS.gene79785:intron | 40.0% |
| AAAGAAGGGCTCTGTGCTAA+TGG | - | chr6.2:72714338-72714357 | MS.gene79785:intron | 45.0% | |
| AAGAAGGGCTCTGTGCTAAT+GGG | - | chr6.2:72714339-72714358 | MS.gene79785:intron | 45.0% | |
| CATGCATCTAAGCAAGCTGA+AGG | + | chr6.2:72714968-72714987 | None:intergenic | 45.0% | |
| CGCTCAAACCTATAACCACT+AGG | + | chr6.2:72714820-72714839 | None:intergenic | 45.0% | |
| CTAAGAAGTGAGAAACCCGA+CGG | + | chr6.2:72714506-72714525 | None:intergenic | 45.0% | |
| GAAAGAGAACCTGATCCTCT+AGG | + | chr6.2:72713172-72713191 | None:intergenic | 45.0% | |
| GGAGATGAGAACAGAGTTCA+GGG | - | chr6.2:72713104-72713123 | MS.gene79785:intron | 45.0% | |
| TGGAGATGAGAACAGAGTTC+AGG | - | chr6.2:72713103-72713122 | MS.gene79785:intron | 45.0% | |
| ! | ACTAAACTCGGTGACTATGG+CGG | - | chr6.2:72712925-72712944 | MS.gene79785:intron | 45.0% |
| ! | GGACGTGACTTTTTACCTAG+AGG | - | chr6.2:72713154-72713173 | MS.gene79785:intron | 45.0% |
| ! | TAGTGGCCTTGGATCCAAAA+TGG | - | chr6.2:72714175-72714194 | MS.gene79785:intron | 45.0% |
| !!! | GAGGTTTTGGGTAGTTCAAC+TGG | - | chr6.2:72713461-72713480 | MS.gene79785:CDS | 45.0% |
| !!! | TCGGTTTTGGAGAGTATCGT+TGG | - | chr6.2:72713133-72713152 | MS.gene79785:intron | 45.0% |
| !!! | ATTTTTTTAGTAATTTATTT+TGG | - | chr6.2:72713229-72713248 | MS.gene79785:intron | 5.0% |
| !!! | TTCTTATTTTATTTTATTTT+TGG | - | chr6.2:72713083-72713102 | MS.gene79785:intron | 5.0% |
| CCACAAGATAGTCAACCCTG+AGG | - | chr6.2:72715055-72715074 | MS.gene79785:intron | 50.0% | |
| CCTCAGGGTTGACTATCTTG+TGG | + | chr6.2:72715058-72715077 | None:intergenic | 50.0% | |
| GAACCATCTTTGACAGGCTC+CGG | + | chr6.2:72714772-72714791 | None:intergenic | 50.0% | |
| GCTTGAAAAGCTTGAGGCAG+AGG | - | chr6.2:72713567-72713586 | MS.gene79785:intron | 50.0% | |
| GGGAAAGGTTACGAGAGAAC+CGG | - | chr6.2:72714750-72714769 | MS.gene79785:intron | 50.0% | |
| TTGCATAAGGGTTCGCGAGT+AGG | + | chr6.2:72714856-72714875 | None:intergenic | 50.0% | |
| ! | TGAAAAATGGGTTCCGCCGT+CGG | - | chr6.2:72714487-72714506 | MS.gene79785:intron | 50.0% |
| AGAAGTGAGAAACCCGACGG+CGG | + | chr6.2:72714503-72714522 | None:intergenic | 55.0% | |
| GAACCGGAGCCTGTCAAAGA+TGG | - | chr6.2:72714766-72714785 | MS.gene79785:intron | 55.0% | |
| ! | GAAAAATGGGTTCCGCCGTC+GGG | - | chr6.2:72714488-72714507 | MS.gene79785:intron | 55.0% |
| CGATACCTGACCACCGACGA+CGG | + | chr6.2:72713004-72713023 | None:intergenic | 60.0% | |
| CTTCCTTCCGTCGCCGTCGT+CGG | - | chr6.2:72712988-72713007 | MS.gene79785:intron | 65.0% | |
| CTGACCACCGACGACGGCGA+CGG | + | chr6.2:72712998-72713017 | None:intergenic | 70.0% | |
| CCACCGACGACGGCGACGGA+AGG | + | chr6.2:72712994-72713013 | None:intergenic | 75.0% | |
| CCTTCCGTCGCCGTCGTCGG+TGG | - | chr6.2:72712991-72713010 | MS.gene79785:intron | 75.0% | |
| CGTCGCCGTCGTCGGTGGTC+AGG | - | chr6.2:72712996-72713015 | MS.gene79785:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 72712871 | 72715379 | 72712871 | ID=MS.gene79785 |
| chr6.2 | mRNA | 72712871 | 72715379 | 72712871 | ID=MS.gene79785.t1;Parent=MS.gene79785 |
| chr6.2 | exon | 72715233 | 72715379 | 72715233 | ID=MS.gene79785.t1.exon1;Parent=MS.gene79785.t1 |
| chr6.2 | CDS | 72715233 | 72715379 | 72715233 | ID=cds.MS.gene79785.t1;Parent=MS.gene79785.t1 |
| chr6.2 | exon | 72713323 | 72713535 | 72713323 | ID=MS.gene79785.t1.exon2;Parent=MS.gene79785.t1 |
| chr6.2 | CDS | 72713323 | 72713535 | 72713323 | ID=cds.MS.gene79785.t1;Parent=MS.gene79785.t1 |
| chr6.2 | exon | 72713174 | 72713215 | 72713174 | ID=MS.gene79785.t1.exon3;Parent=MS.gene79785.t1 |
| chr6.2 | CDS | 72713174 | 72713215 | 72713174 | ID=cds.MS.gene79785.t1;Parent=MS.gene79785.t1 |
| chr6.2 | exon | 72713009 | 72713091 | 72713009 | ID=MS.gene79785.t1.exon4;Parent=MS.gene79785.t1 |
| chr6.2 | CDS | 72713009 | 72713091 | 72713009 | ID=cds.MS.gene79785.t1;Parent=MS.gene79785.t1 |
| chr6.2 | exon | 72712871 | 72712916 | 72712871 | ID=MS.gene79785.t1.exon5;Parent=MS.gene79785.t1 |
| chr6.2 | CDS | 72712871 | 72712916 | 72712871 | ID=cds.MS.gene79785.t1;Parent=MS.gene79785.t1 |
| Gene Sequence |
| Protein sequence |
