Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79795.t1 | XP_003619851.3 | 96.8 | 412 | 13 | 0 | 1 | 412 | 18 | 429 | 7.10E-182 | 646.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79795.t1 | Q9LVI4 | 35.3 | 382 | 173 | 14 | 1 | 374 | 17 | 332 | 7.2e-34 | 146.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79795.t1 | A0A396HFY8 | 96.8 | 412 | 13 | 0 | 1 | 412 | 18 | 429 | 5.1e-182 | 646.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene79795.t1 | TF | Tify |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene066964 | MS.gene79795 | PPI |
MS.gene79795 | MS.gene066964 | PPI |
MS.gene79795 | MS.gene042866 | PPI |
MS.gene79795 | MS.gene82105 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79795.t1 | MTR_6g069870 | 96.203 | 395 | 15 | 0 | 18 | 412 | 1 | 395 | 0.0 | 769 |
MS.gene79795.t1 | MTR_6g069870 | 96.221 | 344 | 13 | 0 | 18 | 361 | 1 | 344 | 0.0 | 669 |
MS.gene79795.t1 | MTR_6g069870 | 95.975 | 323 | 13 | 0 | 18 | 340 | 1 | 323 | 0.0 | 624 |
MS.gene79795.t1 | MTR_1g031930 | 30.670 | 388 | 161 | 14 | 16 | 377 | 31 | 336 | 2.69e-29 | 117 |
MS.gene79795.t1 | MTR_1g031930 | 35.000 | 280 | 107 | 11 | 113 | 374 | 50 | 272 | 2.89e-24 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79795.t1 | AT3G17860 | 38.402 | 388 | 153 | 17 | 1 | 374 | 17 | 332 | 4.24e-47 | 165 |
MS.gene79795.t1 | AT3G17860 | 38.933 | 375 | 137 | 18 | 17 | 374 | 20 | 319 | 1.15e-44 | 158 |
MS.gene79795.t1 | AT3G17860 | 38.770 | 374 | 137 | 18 | 18 | 374 | 1 | 299 | 3.14e-44 | 156 |
MS.gene79795.t1 | AT3G17860 | 38.770 | 374 | 137 | 18 | 18 | 374 | 1 | 299 | 3.14e-44 | 156 |
MS.gene79795.t1 | AT1G48500 | 32.637 | 383 | 118 | 15 | 18 | 379 | 32 | 295 | 7.18e-32 | 123 |
MS.gene79795.t1 | AT1G48500 | 32.143 | 364 | 108 | 14 | 18 | 361 | 2 | 246 | 1.48e-27 | 110 |
MS.gene79795.t1 | AT1G48500 | 32.143 | 364 | 108 | 14 | 18 | 361 | 32 | 276 | 2.82e-27 | 110 |
MS.gene79795.t1 | AT1G70700 | 41.593 | 113 | 58 | 4 | 108 | 220 | 58 | 162 | 1.26e-12 | 67.8 |
MS.gene79795.t1 | AT1G70700 | 41.593 | 113 | 58 | 4 | 108 | 220 | 58 | 162 | 1.95e-12 | 67.4 |
MS.gene79795.t1 | AT1G70700 | 41.593 | 113 | 58 | 4 | 108 | 220 | 58 | 162 | 2.67e-12 | 67.4 |
Find 96 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCATACATGTTCTTCTTAA+AGG | 0.090775 | 6.2:+72861899 | None:intergenic |
CTTGTTTCCTACTTGCTTTA+TGG | 0.147271 | 6.2:+72863799 | None:intergenic |
TGTTCTTCTTAAAGGCAAAT+TGG | 0.268291 | 6.2:+72861907 | None:intergenic |
GTCTAATCATAAATCATTCT+TGG | 0.289760 | 6.2:-72864901 | MS.gene79795:CDS |
TTTGATGCAGTTAGGAGTTC+AGG | 0.316880 | 6.2:-72865074 | MS.gene79795:intron |
GTTACAAACTCACAAACTTT+TGG | 0.317063 | 6.2:-72863650 | MS.gene79795:CDS |
AAATGCTTCTACTAACCATT+TGG | 0.323976 | 6.2:-72862706 | MS.gene79795:CDS |
AATCTCTATTCCTTCCAAAA+AGG | 0.344054 | 6.2:-72863009 | MS.gene79795:CDS |
AACTGTACCACCATAAAATA+TGG | 0.350649 | 6.2:+72863272 | None:intergenic |
AAAACGATACCTTGGTCCTT+TGG | 0.357357 | 6.2:+72869139 | None:intergenic |
GTTGGAAGCATCTTCTTTCA+TGG | 0.359919 | 6.2:+72869165 | None:intergenic |
AGTTTCTCCATTGATTTCTC+TGG | 0.361158 | 6.2:-72861950 | MS.gene79795:CDS |
ACCTTGGTCCTTTGGTTTGT+TGG | 0.375341 | 6.2:+72869147 | None:intergenic |
CCTGGTTGAATCACATTTGT+AGG | 0.375793 | 6.2:+72862648 | None:intergenic |
CGGTGTAGTACCATTGGATT+TGG | 0.378173 | 6.2:+72863305 | None:intergenic |
TTTGAGGGAAGAACAGATAA+AGG | 0.390189 | 6.2:+72863608 | None:intergenic |
GTCACAATAATAAGATCTTT+AGG | 0.396082 | 6.2:-72862735 | MS.gene79795:CDS |
TCTGATCCAGTGCTGCATTC+AGG | 0.408286 | 6.2:+72861980 | None:intergenic |
CTGATTGTGCATCAGAACTT+TGG | 0.410761 | 6.2:+72863753 | None:intergenic |
CAATCTAATCATGTTACTAC+TGG | 0.412033 | 6.2:-72863692 | MS.gene79795:CDS |
TGAGAGGACTTTGCAATTGA+AGG | 0.412113 | 6.2:+72862855 | None:intergenic |
TAAGTCAGTAGAGCCAACTA+TGG | 0.416073 | 6.2:+72863580 | None:intergenic |
GTTGCTACTTGAACCTCCCT+TGG | 0.419319 | 6.2:+72862764 | None:intergenic |
TAGTTGGCTCTACTGACTTA+AGG | 0.429024 | 6.2:-72863577 | MS.gene79795:intron |
CAGTAGTAACATGATTAGAT+TGG | 0.431253 | 6.2:+72863693 | None:intergenic |
TTATCTGTTCTTCCCTCAAA+AGG | 0.432397 | 6.2:-72863605 | MS.gene79795:CDS |
CCTATTGTTGCTACTTCTGT+AGG | 0.433479 | 6.2:-72862678 | MS.gene79795:CDS |
CCTACAGAAGTAGCAACAAT+AGG | 0.446555 | 6.2:+72862678 | None:intergenic |
GAAGTCATTGGGAGAGAACT+TGG | 0.446941 | 6.2:+72862804 | None:intergenic |
GAACTTGCATGAGAAGTCAT+TGG | 0.447319 | 6.2:+72862792 | None:intergenic |
TTGCTACTTGATCCTCCCCT+TGG | 0.449675 | 6.2:+72862909 | None:intergenic |
GCCTTTAAGAAGAACATGTA+TGG | 0.452229 | 6.2:-72861900 | MS.gene79795:CDS |
GCTTGGCAATGGTGAGGGAT+AGG | 0.455476 | 6.2:+72862965 | None:intergenic |
GCATGAGAGGTCACTGGAAG+AGG | 0.456484 | 6.2:+72862942 | None:intergenic |
TTGCTACTTGAACCTCCCTT+GGG | 0.466052 | 6.2:+72862765 | None:intergenic |
GAGGTCACTGGAAGAGGGCT+TGG | 0.467909 | 6.2:+72862948 | None:intergenic |
TCTAATCATAAATCATTCTT+GGG | 0.475638 | 6.2:-72864900 | MS.gene79795:CDS |
GTTTCCAGTTGGACTGCCTC+AGG | 0.477866 | 6.2:-72862409 | MS.gene79795:intron |
AGAATAACACTCATGAAGAT+AGG | 0.479954 | 6.2:-72864995 | MS.gene79795:CDS |
CCCTCAAAAGGTCCCATAGT+TGG | 0.482615 | 6.2:-72863593 | MS.gene79795:CDS |
AACTTGCATGAGAAGTCATT+GGG | 0.486290 | 6.2:+72862793 | None:intergenic |
ATATATCCTGATGAAGCTAC+TGG | 0.487462 | 6.2:+72864951 | None:intergenic |
TAAAATATGGTCAACTGAGC+CGG | 0.491802 | 6.2:+72863285 | None:intergenic |
CTTGGCAATGGTGAGGGATA+GGG | 0.492080 | 6.2:+72862966 | None:intergenic |
ATGGATCCAGTAGCTTCATC+AGG | 0.498303 | 6.2:-72864957 | MS.gene79795:CDS |
ATCATGTTACTAGCTGGAAA+TGG | 0.499618 | 6.2:-72863050 | MS.gene79795:CDS |
CTGAGCCGGTGTAGTACCAT+TGG | 0.502183 | 6.2:+72863299 | None:intergenic |
GTCACAATAATAAGATCCTT+AGG | 0.503685 | 6.2:-72862879 | MS.gene79795:CDS |
AACTTGGCAAAGGTGAGAGA+TGG | 0.504464 | 6.2:+72862820 | None:intergenic |
TTCTTGAATGACATGAATTG+AGG | 0.505348 | 6.2:+72865014 | None:intergenic |
ATCATTCTTGGGTGTGACAC+AGG | 0.505809 | 6.2:-72864889 | MS.gene79795:intron |
CAACAATAGGAGATTCCAAA+TGG | 0.511822 | 6.2:+72862691 | None:intergenic |
CTTTGCAATTGAAGGTCCTA+AGG | 0.512362 | 6.2:+72862863 | None:intergenic |
TAGGTCAAGAAACAGTGTTA+TGG | 0.516069 | 6.2:-72864976 | MS.gene79795:CDS |
AACAGATAAAGGTGTGGCAG+AGG | 0.516274 | 6.2:+72863619 | None:intergenic |
AAGGCAATCATGTTACTAGC+TGG | 0.519440 | 6.2:-72863056 | MS.gene79795:CDS |
TCATGCAAGTTCTTATCCCA+AGG | 0.526316 | 6.2:-72862781 | MS.gene79795:CDS |
CTTCTTAAAGGCAAATTGGT+GGG | 0.529876 | 6.2:+72861911 | None:intergenic |
AAATCACCTGAATGCAGCAC+TGG | 0.539481 | 6.2:-72861986 | MS.gene79795:CDS |
ACTTGGCAAAGGTGAGAGAT+GGG | 0.542203 | 6.2:+72862821 | None:intergenic |
ACTTGAACCAGAGAAATCAA+TGG | 0.546674 | 6.2:+72861943 | None:intergenic |
AGAGGGCTTGGCAATGGTGA+GGG | 0.558559 | 6.2:+72862960 | None:intergenic |
TGGTTGAGTACTTGCATGAG+AGG | 0.558968 | 6.2:+72862929 | None:intergenic |
TCTTCTTAAAGGCAAATTGG+TGG | 0.560082 | 6.2:+72861910 | None:intergenic |
TGGTTAGTAGAAGCATTTGA+AGG | 0.561148 | 6.2:+72862711 | None:intergenic |
CATGAGAGGTCACTGGAAGA+GGG | 0.565323 | 6.2:+72862943 | None:intergenic |
ACTGGAAGAGGGCTTGGCAA+TGG | 0.576847 | 6.2:+72862954 | None:intergenic |
GTACTTGCATGAGAGGTCAC+TGG | 0.578128 | 6.2:+72862936 | None:intergenic |
TGTGCATCAGAACTTTGGAT+AGG | 0.578539 | 6.2:+72863758 | None:intergenic |
TGAATGACATGAATTGAGGA+AGG | 0.578633 | 6.2:+72865018 | None:intergenic |
AAGAGGGCTTGGCAATGGTG+AGG | 0.585289 | 6.2:+72862959 | None:intergenic |
CTTAAAGGCAAATTGGTGGG+TGG | 0.595542 | 6.2:+72861914 | None:intergenic |
CGCGAAAAGCATCGTTAACG+CGG | 0.596341 | 6.2:-72862386 | MS.gene79795:CDS |
CCTACAAATGTGATTCAACC+AGG | 0.596560 | 6.2:-72862648 | MS.gene79795:intron |
TCATGCAAGTACTCAACCAA+GGG | 0.597542 | 6.2:-72862925 | MS.gene79795:CDS |
AAGTCAGTAGAGCCAACTAT+GGG | 0.597778 | 6.2:+72863581 | None:intergenic |
CATGCAAGTTCTTATCCCAA+GGG | 0.608931 | 6.2:-72862780 | MS.gene79795:CDS |
TGATGACATCTCTCCTGAGA+AGG | 0.609439 | 6.2:-72863241 | MS.gene79795:intron |
CTCATGCAAGTACTCAACCA+AGG | 0.611643 | 6.2:-72862926 | MS.gene79795:CDS |
AGGAATTGTTCCAAATCCAA+TGG | 0.614409 | 6.2:-72863315 | MS.gene79795:CDS |
ATGGGATAGGTCATTGTGAG+AGG | 0.619583 | 6.2:+72862839 | None:intergenic |
GCAAAGGTGAGAGATGGGAT+AGG | 0.630123 | 6.2:+72862826 | None:intergenic |
AATTTGGCCATAAAGCAAGT+AGG | 0.634556 | 6.2:-72863806 | MS.gene79795:CDS |
GCAATGGTGAGGGATAGGGT+TGG | 0.638300 | 6.2:+72862970 | None:intergenic |
AAGCAAGTAGGAAACAAGCA+TGG | 0.639462 | 6.2:-72863794 | MS.gene79795:CDS |
GCAAGTTCTTATCCCAAGGG+AGG | 0.641995 | 6.2:-72862777 | MS.gene79795:CDS |
ATTGGGAGAGAACTTGGCAA+AGG | 0.651165 | 6.2:+72862810 | None:intergenic |
CAAATCCAATGGTACTACAC+CGG | 0.651773 | 6.2:-72863304 | MS.gene79795:CDS |
AGATGCTTCCAACAAACCAA+AGG | 0.662188 | 6.2:-72869155 | MS.gene79795:CDS |
TCCAACAAACCAAAGGACCA+AGG | 0.670257 | 6.2:-72869148 | MS.gene79795:intron |
GCAAGTACTCAACCAAGGGG+AGG | 0.678862 | 6.2:-72862921 | MS.gene79795:CDS |
TGCAGCACTGGATCAGACAA+TGG | 0.679085 | 6.2:-72861974 | MS.gene79795:CDS |
TTAGGAGTTCAGGAATGCAG+TGG | 0.686957 | 6.2:-72865064 | MS.gene79795:CDS |
TGTTACTACTGGAATCAACA+TGG | 0.687462 | 6.2:-72863681 | MS.gene79795:CDS |
GGGAAGAACAGATAAAGGTG+TGG | 0.711636 | 6.2:+72863613 | None:intergenic |
CATGCAAGTACTCAACCAAG+GGG | 0.756359 | 6.2:-72862924 | MS.gene79795:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 72861886 | 72869185 | 72861886 | ID=MS.gene79795 |
chr6.2 | mRNA | 72861886 | 72869185 | 72861886 | ID=MS.gene79795.t1;Parent=MS.gene79795 |
chr6.2 | exon | 72869149 | 72869185 | 72869149 | ID=MS.gene79795.t1.exon1;Parent=MS.gene79795.t1 |
chr6.2 | CDS | 72869149 | 72869185 | 72869149 | ID=cds.MS.gene79795.t1;Parent=MS.gene79795.t1 |
chr6.2 | exon | 72864890 | 72865086 | 72864890 | ID=MS.gene79795.t1.exon2;Parent=MS.gene79795.t1 |
chr6.2 | CDS | 72864890 | 72865086 | 72864890 | ID=cds.MS.gene79795.t1;Parent=MS.gene79795.t1 |
chr6.2 | exon | 72863578 | 72863831 | 72863578 | ID=MS.gene79795.t1.exon3;Parent=MS.gene79795.t1 |
chr6.2 | CDS | 72863578 | 72863831 | 72863578 | ID=cds.MS.gene79795.t1;Parent=MS.gene79795.t1 |
chr6.2 | exon | 72863242 | 72863341 | 72863242 | ID=MS.gene79795.t1.exon4;Parent=MS.gene79795.t1 |
chr6.2 | CDS | 72863242 | 72863341 | 72863242 | ID=cds.MS.gene79795.t1;Parent=MS.gene79795.t1 |
chr6.2 | exon | 72862649 | 72863081 | 72862649 | ID=MS.gene79795.t1.exon5;Parent=MS.gene79795.t1 |
chr6.2 | CDS | 72862649 | 72863081 | 72862649 | ID=cds.MS.gene79795.t1;Parent=MS.gene79795.t1 |
chr6.2 | exon | 72862363 | 72862423 | 72862363 | ID=MS.gene79795.t1.exon6;Parent=MS.gene79795.t1 |
chr6.2 | CDS | 72862363 | 72862423 | 72862363 | ID=cds.MS.gene79795.t1;Parent=MS.gene79795.t1 |
chr6.2 | exon | 72861886 | 72862042 | 72861886 | ID=MS.gene79795.t1.exon7;Parent=MS.gene79795.t1 |
chr6.2 | CDS | 72861886 | 72862042 | 72861886 | ID=cds.MS.gene79795.t1;Parent=MS.gene79795.t1 |
Gene Sequence |
Protein sequence |