AlfalfaGEDB | MS.gene80041

M. sativa cultivar XinJiangDaYe / MS.gene80041

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF12854.10 PF13041.9 PF14432.9 PF20431.1

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80041.t1	RHN57489.1	97.8	684	15	0	1	684	1	684	0.00E+00	1382.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80041.t1	Q0WSH6	65.5	685	234	2	1	684	1	684	7.0e-268	924.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80041.t1	A0A396HW00	97.8	684	15	0	1	684	1	684	0.0e+00	1382.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049824	MS.gene80041	0.806709	7.21E-50	-1.69E-46
MS.gene049825	MS.gene80041	0.820982	5.14E-53	-1.69E-46
MS.gene049873	MS.gene80041	0.814749	1.31E-51	-1.69E-46
MS.gene056091	MS.gene80041	0.808027	3.79E-50	-1.69E-46
MS.gene05954	MS.gene80041	0.810261	1.26E-50	-1.69E-46
MS.gene06001	MS.gene80041	0.812634	3.84E-51	-1.69E-46

Showing 1 to 6 of 6 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene24886	MS.gene80041	PPI
MS.gene24889	MS.gene80041	PPI
MS.gene33338	MS.gene80041	PPI
MS.gene33342	MS.gene80041	PPI
MS.gene80041	MS.gene034001	PPI
MS.gene80041	MS.gene79526	PPI
MS.gene80041	MS.gene034006	PPI
MS.gene80041	MS.gene79522	PPI

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80041.t1	MTR_5g088310	97.222	684	19	0	1	684	1	684	0.0	1389
MS.gene80041.t1	MTR_1g103660	96.784	684	22	0	1	684	1	684	0.0	1384
MS.gene80041.t1	MTR_8g065730	38.243	740	386	8	11	684	14	748	3.46e-171	508
MS.gene80041.t1	MTR_8g065730	27.046	281	203	2	6	285	275	554	5.56e-26	114
MS.gene80041.t1	MTR_7g083820	41.214	626	352	4	72	684	50	672	1.22e-169	501
MS.gene80041.t1	MTR_7g083820	28.814	413	260	10	43	431	122	524	8.70e-38	150
MS.gene80041.t1	MTR_4g113240	40.211	664	390	6	25	684	357	1017	4.75e-167	506
MS.gene80041.t1	MTR_4g113240	28.681	523	334	17	28	527	45	551	6.22e-48	182
MS.gene80041.t1	MTR_4g113240	29.755	326	178	11	230	544	44	329	8.89e-29	123
MS.gene80041.t1	MTR_8g069550	39.794	681	372	6	39	684	80	757	1.28e-166	496

Showing 1 to 10 of 815 entries

Previous1 2 3 4 5…82Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80041.t1	AT4G14850	65.547	685	234	2	1	684	1	684	0.0	933
MS.gene80041.t1	AT5G09950	40.115	693	405	8	1	684	298	989	1.87e-175	527
MS.gene80041.t1	AT5G09950	27.406	478	328	12	25	490	14	484	3.08e-40	159
MS.gene80041.t1	AT5G09950	29.333	300	197	9	214	508	2	291	8.84e-24	107
MS.gene80041.t1	AT5G09950	40.115	693	405	8	1	684	304	995	2.48e-175	526
MS.gene80041.t1	AT5G09950	27.406	478	328	12	25	490	20	490	3.75e-40	159
MS.gene80041.t1	AT5G09950	27.628	333	227	6	103	429	3	327	8.10e-26	114
MS.gene80041.t1	AT5G09950	40.115	693	405	8	1	684	304	995	2.48e-175	526
MS.gene80041.t1	AT5G09950	27.406	478	328	12	25	490	20	490	3.75e-40	159
MS.gene80041.t1	AT5G09950	27.628	333	227	6	103	429	3	327	8.10e-26	114

Showing 1 to 10 of 919 entries

Previous1 2 3 4 5…92Next

Find 156 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTATCACGACGCATGT+TGG	0.561024	1.1:-74507639	None:intergenic
AACGCAACCAGAGATAAGAG+AGG	0.739401	1.1:-74507579	None:intergenic
AAGAGAGATAGATTGGTATC+AGG	0.398752	1.1:-74509297	None:intergenic
AAGAGAGGTCCAAGTAACAA+CGG	0.692417	1.1:-74507564	None:intergenic
AAGGAATTTCTTTGTGTGCA+TGG	0.491773	1.1:+74507941	MS.gene80041:CDS
AAGTTCATCTCAAGAATCGT+TGG	0.530800	1.1:+74509468	MS.gene80041:CDS
AATGCCTCTCTCCACTGCCC+CGG	0.545565	1.1:-74508626	None:intergenic
AATGGGCTTGTTGATTTCTA+TGG	0.258616	1.1:+74508091	MS.gene80041:CDS
ACATCAAGGTGACGTTGACA+TGG	0.605648	1.1:+74508510	MS.gene80041:CDS
ACATGGAATGCAATGATAGG+TGG	0.624012	1.1:+74508481	MS.gene80041:CDS

Showing 1 to 10 of 156 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAAAGCTTCAGAAGTT+TGG	+	chr1.1:74509334-74509353	MS.gene80041:CDS	30.0%
AGAAAGGAAATGAAAGACAT+TGG	+	chr1.1:74509126-74509145	MS.gene80041:CDS	30.0%
ATACATCCTCAAAATCTACT+AGG	+	chr1.1:74507356-74507375	MS.gene80041:CDS	30.0%
ATATGGTGAGATTGAATCTT+GGG	+	chr1.1:74508011-74508030	MS.gene80041:CDS	30.0%
CTATATTATCAGCATGTAGT+AGG	+	chr1.1:74508602-74508621	MS.gene80041:CDS	30.0%
GATTCTTGAGATGAACTTAA+TGG	-	chr1.1:74509466-74509485	None:intergenic	30.0%
GCACAAAATGTAATCGAATT+CGG	-	chr1.1:74507971-74507990	None:intergenic	30.0%
TAAATCGAAGAGAGATAGAT+TGG	-	chr1.1:74509307-74509326	None:intergenic	30.0%
TCAATTCATCTAACTAAGCA+AGG	-	chr1.1:74508986-74509005	None:intergenic	30.0%
TGATTTCTATGGAAAATGTG+GGG	+	chr1.1:74508102-74508121	MS.gene80041:CDS	30.0%

Showing 1 to 10 of 185 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	74507350	74509569	74507350	ID=MS.gene80041
chr1.1	mRNA	74507350	74509569	74507350	ID=MS.gene80041.t1;Parent=MS.gene80041
chr1.1	exon	74507350	74508938	74507350	ID=MS.gene80041.t1.exon1;Parent=MS.gene80041.t1
chr1.1	CDS	74507350	74508938	74507350	ID=cds.MS.gene80041.t1;Parent=MS.gene80041.t1
chr1.1	exon	74509104	74509569	74509104	ID=MS.gene80041.t1.exon2;Parent=MS.gene80041.t1
chr1.1	CDS	74509104	74509569	74509104	ID=cds.MS.gene80041.t1;Parent=MS.gene80041.t1

Gene Sequence

>MS.gene80041

ATGAACATACATCCTCAAAATCTACTAGGTAGTTTACTCGAATCAGCAGTTTCAACACATTGTTCCATCCTAGGTCGTACCATCCATGCACACATCATTCGCACACATGTCACCCCACTCCCATCCTTCCTCTCCAACCACCTCGTCAACATGTACTCAAAACTCGACCTTCTTAACTCAGCTCAACACGTTCTCTCACTCACTCACCTCCGCACCGTTGTTACTTGGACCTCTCTTATCTCTGGTTGCGTTCATAACCGTCGTTTTCTCCCTGCTCTTCTCCATTTCACCAACATGCGTCGTGATAATGTTCAACCTAACGACTTCACGTTTCCTTGTGTTTTCAAAGCTTCTGCTTTTTTGCAGATACCCATGACTGGTAAACAGATTCATGGTCTTGCTTTAAAGGGTGGAATGATATATGATGTGTTTGTTGGGTGTAGTTGTTTTGATATGTATTGTAAAACTGGGTTTCGCGGTGATGCTTGTGACATGTTTGATGAAATGCCTCATAGAAACTTGGCTACTTGGAATGCTTATATTTCTAATGCGGTTCAAGATAGGCGGTCTTTGGATGCGATTGCGGCGTTTAAGGAATTTCTTTGTGTGCATGGACAGCCGAATTCGATTACATTTTGTGCGTTTTTGAATGCTTGCGTTGATATGGTGAGATTGAATCTTGGGCGTCAGTTACATTCTTTTATAGTGCGGTGTGGATATGAAGAGGATGTTTCAGTTGCCAATGGGCTTGTTGATTTCTATGGAAAATGTGGGGACATTGTATCTGCTGAAATGGTTTTTAGTAGAATTGGTAATAGGAAGAATGTTGTTTCATGGTGCTCTATGCTGGCTGCTCTTGTGCAAAACCATGAGGAAGAGAGGGCTTGTATGGTTTTCCAGCAGGCGAGGAAAGAAGTTGAGCCAACAGATTTCATGATATCGAGTGTGCTTAGTGCTTGTGCTGAGCTTGGGGGGCTTGAATTGGGGAGGTCGGTTCATGCTCTTGCTGTCAAAGCATGTGTTGAGGATAATATATTTGTTGGGAGTGCACTTGTTGACTTGTATGGAAAATGTGGAAGTATAGAGAATGCTGAGCAAGTTTTTAGTGAATTGCCTGAAAGGAACTTAGTAACATGGAATGCAATGATAGGTGGATATGCACATCAAGGTGACGTTGACATGGCCTTGCGTCTATTTGAGGAGATGACTTTGGGTAGCCGTGGTATTAGACCGAGTTATGTGACACTAGTTTCTATATTATCAGCATGTAGTAGGGCCGGGGCAGTGGAGAGAGGCATTCAAATATTTGAGTCAATGAGATTGAACTATGGAATTGAACCAGGTGCTGAGCATTTTGCTTGTGTTGTGGACCTTCTAGGGAGATCAGGTTTGGTAGACCGTGCTTATGAATTTATTCAAAATATGCCAATTCAACCCACTATTTCAGTGTGGGGAGCTCTACTCGGCGCTTGTAGGATGCACGGGAAAACAAAATTGGGAAAAATTGCTGCTGAAAAATTATTTGAGCTTGATCATGTAGACTCTGGCAACCATGTAGTGCTTTCTAATATGCTTGCATCTGCTGGCAGGTATTGATTTTAAACCATGTTAACTAATTTTCCTTCTTGAATTGCCTTGCTTAGTTAGATGAATTGATAGTTTTATTTGATATTTTTCTTCAGTTGCTAACATATTTAGTTGTAACTAGAGTGATGTTGTCAGTTAATGTTCATGCTTGTAATTGCTAAATGCAGATGGGAAGAAGCCACCGTTGTCAGAAAGGAAATGAAAGACATTGGTATAAAGAAAAATGTTGGATATAGTTGGATTGCTGTAAAAAACAGAATCCATGTTTTCCAAGCAAAGGATAGTTCTCATGATAGGAACTCTGAAATTCAGGCTATGCTAGGTAAGCTCAGAGGAGGGATGAAGGAGGCTGGTTATGTTCCTGATACCAATCTATCTCTCTTCGATTTAGAAGATGAAGAAAAAGCTTCAGAAGTTTGGTGCCACAGTGAGAAAATTGCTCTTGCTTTTGGCCTCATAGCTCTCCCTCAAGGTGTGCCTATACGTATCACAAAAAATCTTAGAATTTGTGGAGATTGCCATAGTGCCATTAAGTTCATCTCAAGAATCGTTGGGCGAGAAATTATTGTGAGAGATAATCATCGTTTTCATCGCTTTAAGGATGGTTGTTGCTCTTGTAAAGACTATTGGTAA

Protein sequence

>MS.gene80041.t1

MNIHPQNLLGSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFLQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACDMFDEMPHRNLATWNAYISNAVQDRRSLDAIAAFKEFLCVHGQPNSITFCAFLNACVDMVRLNLGRQLHSFIVRCGYEEDVSVANGLVDFYGKCGDIVSAEMVFSRIGNRKNVVSWCSMLAALVQNHEEERACMVFQQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDLYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDVDMALRLFEEMTLGSRGIRPSYVTLVSILSACSRAGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMPIQPTISVWGALLGACRMHGKTKLGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWCHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW