AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80063

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80063.t1 MTR_1g104550 95.441 658 29 1 1 657 1 658 0.0 1306
MS.gene80063.t1 MTR_1g104590 53.374 652 292 3 18 657 7 658 0.0 753
MS.gene80063.t1 MTR_4g117660 48.815 633 310 4 34 657 33 660 0.0 652
MS.gene80063.t1 MTR_4g045887 45.897 658 343 5 10 657 4 658 0.0 637
MS.gene80063.t1 MTR_4g117610 46.349 630 329 3 34 657 27 653 0.0 623
MS.gene80063.t1 MTR_4g117670 50.362 552 267 2 112 657 26 576 0.0 590
MS.gene80063.t1 MTR_3g080500 45.781 640 326 8 34 657 78 712 0.0 570
MS.gene80063.t1 MTR_3g077080 29.853 680 405 20 34 657 8 671 8.22e-81 270
MS.gene80063.t1 MTR_8g069505 29.394 677 412 19 34 657 8 671 3.69e-80 268
MS.gene80063.t1 MTR_8g069505 29.481 675 410 19 34 655 32 693 4.26e-80 269
MS.gene80063.t1 MTR_3g077080 29.853 680 405 20 34 657 73 736 4.51e-80 270
MS.gene80063.t1 MTR_8g069505 29.394 677 412 19 34 657 69 732 1.21e-79 268
MS.gene80063.t1 MTR_8g069505 29.394 677 412 19 34 657 82 745 1.50e-79 268
MS.gene80063.t1 MTR_5g033170 29.204 678 413 19 34 657 44 708 6.19e-79 266
MS.gene80063.t1 MTR_5g033170 29.129 666 405 19 34 645 44 696 5.04e-76 258
MS.gene80063.t1 MTR_3g077080 31.061 528 328 12 153 657 1 515 9.37e-74 247
MS.gene80063.t1 MTR_8g069505 28.343 501 298 16 34 486 8 495 1.19e-49 182
MS.gene80063.t1 MTR_8g069505 28.343 501 298 16 34 486 82 569 2.91e-49 182
MS.gene80063.t1 MTR_8g069505 28.343 501 298 16 34 486 69 556 3.15e-49 182
MS.gene80063.t1 MTR_8g069505 28.343 501 298 16 34 486 82 569 4.31e-49 182
MS.gene80063.t1 MTR_4g098910 46.535 101 46 3 67 163 27 123 1.42e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80063.t1 AT4G14940 61.444 651 243 5 13 657 1 649 0.0 845
MS.gene80063.t1 AT1G31690 50.946 634 302 4 33 657 26 659 0.0 665
MS.gene80063.t1 AT1G31710 50.472 636 303 5 34 657 28 663 0.0 662
MS.gene80063.t1 AT1G31670 50.786 636 284 8 33 657 106 723 0.0 640
MS.gene80063.t1 AT1G62810 44.828 638 334 8 34 657 60 693 0.0 560
MS.gene80063.t1 AT4G12290 44.031 645 335 11 34 657 82 721 0.0 550
MS.gene80063.t1 AT3G43670 44.671 638 335 8 34 657 41 674 0.0 549
MS.gene80063.t1 AT4G12290 42.353 595 317 11 34 607 82 671 1.22e-158 472
MS.gene80063.t1 AT4G12280 48.913 276 133 2 390 657 5 280 8.31e-96 297
MS.gene80063.t1 AT4G12270 38.060 402 218 12 7 382 56 452 1.00e-81 266
MS.gene80063.t1 AT2G42490 28.804 677 416 19 34 657 80 743 2.89e-78 265

Find 155 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAACTTTGTCAGTTTATT+AGG 0.060118 1.1:-74851708 None:intergenic
TATAGAAGCATGACACTTTA+AGG 0.116614 1.1:-74849732 None:intergenic
CCCTGAACTGTTGGCATTAC+TGG 0.128920 1.1:-74852968 None:intergenic
GTTACATGTAGCAACTATTT+TGG 0.149249 1.1:-74849908 None:intergenic
TTTATGGATGTTGGGGAATT+TGG 0.164942 1.1:+74850147 MS.gene80063:CDS
ATGAAGTGAAATGGGGTAAT+TGG 0.194135 1.1:+74849962 MS.gene80063:CDS
CCATCTTTCTGACTTATTAT+AGG 0.201107 1.1:-74851844 None:intergenic
GGGATGAATCAGTAAATATT+TGG 0.213588 1.1:+74849755 MS.gene80063:CDS
CATCTTTCTGACTTATTATA+GGG 0.253755 1.1:-74851843 None:intergenic
TCCAGTAATGCCAACAGTTC+AGG 0.266063 1.1:+74852967 MS.gene80063:CDS
AATTACCCCATTTCACTTCA+TGG 0.275191 1.1:-74849960 None:intergenic
ACAAAATGATAGGTAATATT+AGG 0.286083 1.1:-74849367 None:intergenic
AATCAACAATCCCACAAAAT+TGG 0.291880 1.1:+74850335 MS.gene80063:CDS
AAATTTGTACCTTCAGCTTT+AGG 0.299315 1.1:-74849865 None:intergenic
TTAAAGTGTCATGCTTCTAT+AGG 0.300359 1.1:+74849734 MS.gene80063:CDS
TAGCTCATGGGTTTCACCTT+TGG 0.306251 1.1:-74849491 None:intergenic
ACTTGTTGCACTTCTCCATT+AGG 0.313905 1.1:-74850252 None:intergenic
CTAACTTTGTCAGTTTATTA+GGG 0.313939 1.1:-74851707 None:intergenic
ACTACGATTATATTCTTGAT+TGG 0.332434 1.1:+74851077 MS.gene80063:CDS
AATATAGGAGAGTGATGTAT+AGG 0.334376 1.1:+74850061 MS.gene80063:CDS
TAGTAGATGACAACCACTTT+AGG 0.334817 1.1:-74849420 None:intergenic
CCTAATAAACTGACAAAGTT+AGG 0.341168 1.1:+74851708 MS.gene80063:CDS
TCCATATACACTGCATTTCC+CGG 0.342023 1.1:-74850213 None:intergenic
AGACAAATATAAGCCCCTTT+TGG 0.346719 1.1:-74849650 None:intergenic
GAACACCAAGGAAGAGTTAC+TGG 0.348403 1.1:+74851601 MS.gene80063:CDS
GATGTTGGGGAATTTGGTTT+TGG 0.350716 1.1:+74850153 MS.gene80063:CDS
CCCGGGAAATGCAGTGTATA+TGG 0.354787 1.1:+74850212 MS.gene80063:CDS
ACATGTAACATATCAAATAT+TGG 0.356378 1.1:+74849922 MS.gene80063:CDS
CAAATAAAAGAAAGAGCATT+TGG 0.360244 1.1:+74851444 MS.gene80063:CDS
ATATAGGAGAGTGATGTATA+GGG 0.363872 1.1:+74850062 MS.gene80063:CDS
AAGGTCAAAGCAAGTGGCTT+TGG 0.369667 1.1:+74851579 MS.gene80063:CDS
TAAAAGACCATGAAGTGAAA+TGG 0.370388 1.1:+74849953 MS.gene80063:CDS
TAGGTAATCAAGTGGGTTAC+CGG 0.374528 1.1:+74851727 MS.gene80063:CDS
GGGAAGCTGAGGCTAGAATT+AGG 0.374969 1.1:+74851649 MS.gene80063:CDS
TATGCATAGGTGGCTCTAAC+AGG 0.375675 1.1:+74851381 MS.gene80063:intron
TTTATTTCAGTTGGAGATAG+AGG 0.376408 1.1:-74849301 None:intergenic
AAAAGACCATGAAGTGAAAT+GGG 0.385354 1.1:+74849954 MS.gene80063:CDS
GAGATGATGGCTTAGCCGTT+TGG 0.398485 1.1:+74851898 MS.gene80063:CDS
ACTGGAAAATCTTCTTGATA+AGG 0.399267 1.1:-74852950 None:intergenic
ACAACCGGTTACTTCTTTGT+TGG 0.399751 1.1:+74851761 MS.gene80063:CDS
CTACGATTATATTCTTGATT+GGG 0.402457 1.1:+74851078 MS.gene80063:CDS
GTATAAGAAGCTCTTCTTTG+TGG 0.406138 1.1:-74851798 None:intergenic
TTATGTATAATGATAGATAC+AGG 0.412401 1.1:+74849833 MS.gene80063:CDS
CAAAGAGTCAATTGCCAAAA+GGG 0.412911 1.1:+74849636 MS.gene80063:CDS
TGAAGTGAAATGGGGTAATT+GGG 0.414227 1.1:+74849963 MS.gene80063:CDS
TAAAGTGTCATGCTTCTATA+GGG 0.417273 1.1:+74849735 MS.gene80063:CDS
AGTAATGTGATTCCTTCAAT+AGG 0.423251 1.1:-74849784 None:intergenic
CCGGTTGATTAGTGGACAAC+CGG 0.428443 1.1:+74851746 MS.gene80063:CDS
GTGGGTTACCGGTTGATTAG+TGG 0.428815 1.1:+74851738 MS.gene80063:CDS
CCATTCACAATTGGTTGGTA+TGG 0.433670 1.1:+74849688 MS.gene80063:CDS
CCAGTAATGCCAACAGTTCA+GGG 0.434764 1.1:+74852968 MS.gene80063:CDS
CTGGAGGGTTCTATGCTGAT+AGG 0.440718 1.1:+74851868 MS.gene80063:CDS
ATAGAAGCATGACACTTTAA+GGG 0.442635 1.1:-74849731 None:intergenic
TTGGCTTGTCTAGGAATACT+AGG 0.444539 1.1:-74849454 None:intergenic
TTTCCCGGGCAATCAACCTT+GGG 0.447039 1.1:-74850198 None:intergenic
GGATGAATCAGTAAATATTT+GGG 0.448183 1.1:+74849756 MS.gene80063:CDS
AAGAGCATTTGGAACCTTAG+TGG 0.448202 1.1:+74851455 MS.gene80063:CDS
AAAAGCTCAATGAATGTAAA+CGG 0.449384 1.1:-74849577 None:intergenic
TTTATCAAACCTTGATGCTA+TGG 0.452224 1.1:-74849194 None:intergenic
CTAAAATACCATTCTAATGT+AGG 0.459209 1.1:-74850120 None:intergenic
AACTAGACATTGTGCAATCA+TGG 0.462369 1.1:-74849224 None:intergenic
AAAGTGGCAGCATAAAAGTT+GGG 0.464025 1.1:+74851110 MS.gene80063:CDS
GCAACCCAAGGTTGATTGCC+CGG 0.466049 1.1:+74850194 MS.gene80063:CDS
TGAGACATTTGTTCCTTACA+TGG 0.466817 1.1:+74850095 MS.gene80063:CDS
TCTTGTGTACCATTCACAAT+TGG 0.469454 1.1:+74849679 MS.gene80063:CDS
CAACCCAAGGTTGATTGCCC+GGG 0.470906 1.1:+74850195 MS.gene80063:CDS
CCGGTTGTCCACTAATCAAC+CGG 0.473694 1.1:-74851746 None:intergenic
ATTTCCCGGGCAATCAACCT+TGG 0.477945 1.1:-74850199 None:intergenic
TCAAAGAGTCAATTGCCAAA+AGG 0.480601 1.1:+74849635 MS.gene80063:CDS
TCATCCAACAAAGAAGTAAC+CGG 0.481046 1.1:-74851765 None:intergenic
CTTCTTGATAAGGAACATGA+TGG 0.481769 1.1:-74852940 None:intergenic
TTCAACATCAACAAAATGAT+AGG 0.482896 1.1:-74849377 None:intergenic
ACCGTCCAGTAACTCTTCCT+TGG 0.484188 1.1:-74851606 None:intergenic
ATTTGGGCACGGCCTATTGA+AGG 0.485547 1.1:+74849772 MS.gene80063:CDS
CCTATAATAAGTCAGAAAGA+TGG 0.486412 1.1:+74851844 MS.gene80063:CDS
TCTAGCCTCAGCTTCCCTCT+TGG 0.488510 1.1:-74851643 None:intergenic
CATCAATGCAAAGTTGCAAA+AGG 0.489305 1.1:+74851560 MS.gene80063:CDS
GGACTTCTGGTAATGTGGCT+TGG 0.489469 1.1:+74850301 MS.gene80063:CDS
TGGAGAGGCTGATATAACTT+TGG 0.495614 1.1:+74851027 MS.gene80063:CDS
TTGGAGATAGAGGGTCTAAA+GGG 0.500491 1.1:-74849291 None:intergenic
TTAACTATTAACAGCTCAGT+TGG 0.505019 1.1:-74851684 None:intergenic
TTTGGCTCTAACAACTACCT+TGG 0.506905 1.1:-74849473 None:intergenic
AATAAGTCAGAAAGATGGGC+TGG 0.508097 1.1:+74851849 MS.gene80063:CDS
GTACCTTCAGCTTTAGGCAT+AGG 0.508242 1.1:-74849859 None:intergenic
AAAAGTGGCAGCATAAAAGT+TGG 0.511324 1.1:+74851109 MS.gene80063:CDS
CTATAATAAGTCAGAAAGAT+GGG 0.513360 1.1:+74851845 MS.gene80063:CDS
AAGGTAGTTGTTAGAGCCAA+AGG 0.513719 1.1:+74849475 MS.gene80063:CDS
GACAAAGTTAGGTAATCAAG+TGG 0.516354 1.1:+74851719 MS.gene80063:CDS
GTTGGAGATAGAGGGTCTAA+AGG 0.519701 1.1:-74849292 None:intergenic
TGAGAGGACTTCTGGTAATG+TGG 0.521014 1.1:+74850296 MS.gene80063:CDS
GATAGGAGCCGTGGAGATGA+TGG 0.529443 1.1:+74851885 MS.gene80063:CDS
TTAAGTCCACCACTAGCTCA+TGG 0.529687 1.1:-74849504 None:intergenic
AGCTGATAGCTTGCAACCCA+AGG 0.530584 1.1:+74850182 MS.gene80063:CDS
GATTGGGAATTCCTGAAAAG+TGG 0.539523 1.1:+74851094 MS.gene80063:CDS
CTAGTGGTGGACTTAACAAA+AGG 0.541951 1.1:+74849511 MS.gene80063:CDS
CCATACCAACCAATTGTGAA+TGG 0.543660 1.1:-74849688 None:intergenic
TCAAAACCACCCTGAACTGT+TGG 0.547785 1.1:-74852977 None:intergenic
AGCCTCAGCTTCCCTCTTGG+CGG 0.548864 1.1:-74851640 None:intergenic
TAAGTCCACCACTAGCTCAT+GGG 0.550349 1.1:-74849503 None:intergenic
AAGTTACCTCTGGCTCCAAA+CGG 0.553158 1.1:-74851913 None:intergenic
GTAGGGTTTAATGCTAGAGC+AGG 0.558166 1.1:+74849994 MS.gene80063:CDS
GATAAAATCTACAAAGGTCA+CGG 0.559746 1.1:+74849547 MS.gene80063:CDS
ACATGGATCCTACATTAGAA+TGG 0.559767 1.1:+74850112 MS.gene80063:CDS
TAGTATTCCTAGACAAGCCA+AGG 0.560332 1.1:+74849456 MS.gene80063:CDS
TCTAATGTAGGATCCATGTA+AGG 0.562823 1.1:-74850108 None:intergenic
GTACTTTATACTCAAAGCAA+TGG 0.566274 1.1:-74853031 None:intergenic
TTGCATTATCATCAATGTCA+AGG 0.566643 1.1:-74851530 None:intergenic
TTATTTCAGTTGGAGATAGA+GGG 0.567066 1.1:-74849300 None:intergenic
AGAGGCTGATATAACTTTGG+TGG 0.568953 1.1:+74851030 MS.gene80063:CDS
TCTACAGATAAGAGATGGAG+AGG 0.570899 1.1:+74851012 MS.gene80063:intron
ATAGTTCAACAATCTTACCT+TGG 0.573038 1.1:+74849337 MS.gene80063:CDS
CCATATACACTGCATTTCCC+GGG 0.575282 1.1:-74850212 None:intergenic
CTTATACAAAGTATCAAGTG+TGG 0.580162 1.1:+74851814 MS.gene80063:CDS
ATAGTGCTGTGGCACACAGT+TGG 0.581553 1.1:+74852914 MS.gene80063:CDS
GTGTACCATTCACAATTGGT+TGG 0.582500 1.1:+74849683 MS.gene80063:CDS
AGTCAGAAAGATGGGCTGGA+GGG 0.585305 1.1:+74851853 MS.gene80063:CDS
ACAACTACCTTGGCTTGTCT+AGG 0.585547 1.1:-74849463 None:intergenic
AGCCGCCAAGAGGGAAGCTG+AGG 0.588173 1.1:+74851638 MS.gene80063:CDS
GTGATCATGATAATCAGCTA+TGG 0.588908 1.1:-74851487 None:intergenic
TTCTATGCTGATAGGAGCCG+TGG 0.589255 1.1:+74851876 MS.gene80063:CDS
GGTCAAGATAATATGTTACA+AGG 0.594480 1.1:-74851509 None:intergenic
AAAGAGTCAATTGCCAAAAG+GGG 0.595022 1.1:+74849637 MS.gene80063:CDS
AAAACATGACCATAGCATCA+AGG 0.597001 1.1:+74849185 None:intergenic
GATAGAGGGTCTAAAGGGTG+AGG 0.598787 1.1:-74849286 None:intergenic
TATAGGAGAGTGATGTATAG+GGG 0.599318 1.1:+74850063 MS.gene80063:CDS
TTATACAAAGTATCAAGTGT+GGG 0.599809 1.1:+74851815 MS.gene80063:CDS
TTGCAAAAGGTCAAAGCAAG+TGG 0.608603 1.1:+74851573 MS.gene80063:CDS
GGAAATGCAGTGTATATGGA+TGG 0.610466 1.1:+74850216 MS.gene80063:CDS
AGGTGAAACCCATGAGCTAG+TGG 0.611197 1.1:+74849495 MS.gene80063:CDS
GCTCAATGAATGTAAACGGA+GGG 0.614184 1.1:-74849573 None:intergenic
GGTCAGAATGATTGCTACTG+TGG 0.615858 1.1:+74851051 MS.gene80063:CDS
AATAAAAGAAGCCGCCAAGA+GGG 0.619306 1.1:+74851629 MS.gene80063:CDS
GTACCTATGCCTAAAGCTGA+AGG 0.627064 1.1:+74849856 MS.gene80063:CDS
TAATGTGGCTTGGAGACACA+TGG 0.627138 1.1:+74850311 MS.gene80063:CDS
AAGTGGCAGCATAAAAGTTG+GGG 0.627330 1.1:+74851111 MS.gene80063:CDS
GCTTAGCCGTTTGGAGCCAG+AGG 0.628223 1.1:+74851907 MS.gene80063:CDS
AATCAGTAAATATTTGGGCA+CGG 0.629929 1.1:+74849761 MS.gene80063:CDS
TAATAAAAGAAGCCGCCAAG+AGG 0.630726 1.1:+74851628 MS.gene80063:CDS
GTCAGAATGATTGCTACTGT+GGG 0.632702 1.1:+74851052 MS.gene80063:CDS
AAGTCAGAAAGATGGGCTGG+AGG 0.632809 1.1:+74851852 MS.gene80063:CDS
GCTGAGGCTAGAATTAGGCT+CGG 0.634518 1.1:+74851654 MS.gene80063:CDS
GAGAAGTGCAACAAGTACCA+AGG 0.641177 1.1:+74850259 MS.gene80063:CDS
AGCTCAATGAATGTAAACGG+AGG 0.644081 1.1:-74849574 None:intergenic
GTATCAGATAAAATCTACAA+AGG 0.657648 1.1:+74849541 MS.gene80063:CDS
AGAAGTGCAACAAGTACCAA+GGG 0.659372 1.1:+74850260 MS.gene80063:CDS
TGAAACCCATGAGCTAGTGG+TGG 0.659649 1.1:+74849498 MS.gene80063:CDS
ACAAAGTTAGGTAATCAAGT+GGG 0.674986 1.1:+74851720 MS.gene80063:CDS
ACCAAGGAAGAGTTACTGGA+CGG 0.675087 1.1:+74851605 MS.gene80063:CDS
CGGCTAAGCCATCATCTCCA+CGG 0.681883 1.1:-74851893 None:intergenic
AAAGACCATGAAGTGAAATG+GGG 0.693342 1.1:+74849955 MS.gene80063:CDS
AGAATACAGACATAGTGCTG+TGG 0.711683 1.1:+74852903 MS.gene80063:CDS
TATGTATAATGATAGATACA+GGG 0.716158 1.1:+74849834 MS.gene80063:CDS
TAATATTAGGAATAGCACCA+AGG 0.730567 1.1:-74849354 None:intergenic
CAAGTGGCTTTGGAACACCA+AGG 0.777920 1.1:+74851589 MS.gene80063:CDS
GTAATGCCAACAGTTCAGGG+TGG 0.794870 1.1:+74852971 MS.gene80063:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTAATAAAAAAATT+AGG + chr1.1:74852513-74852532 MS.gene80063:intron 0.0%
!! ATGATAAAAAACAAAAATAT+AGG + chr1.1:74850046-74850065 MS.gene80063:CDS 10.0%
!! TTTAATAAAAAAATTAGGAA+GGG + chr1.1:74852518-74852537 MS.gene80063:intron 10.0%
!!! ATATATAAATCTACAATTTT+TGG - chr1.1:74852169-74852188 None:intergenic 10.0%
!!! TTTTAATAAAAAAATTAGGA+AGG + chr1.1:74852517-74852536 MS.gene80063:intron 10.0%
!! AAAAAAAAAGTCCTATAAAA+AGG + chr1.1:74850601-74850620 MS.gene80063:intron 15.0%
!! AATAATATCTATAGTAAAAG+TGG - chr1.1:74852039-74852058 None:intergenic 15.0%
!! AATTTACTATTCAATTACAA+AGG + chr1.1:74851256-74851275 MS.gene80063:intron 15.0%
!! CTCAAAATTGTATAAATATA+TGG + chr1.1:74852109-74852128 MS.gene80063:intron 15.0%
!! GAAGTAATAAAAAAAAATTG+AGG - chr1.1:74852644-74852663 None:intergenic 15.0%
!! TATAAATGCTCTTATATTTA+GGG + chr1.1:74850637-74850656 MS.gene80063:intron 15.0%
!! TTAATAAAAAAATTAGGAAG+GGG + chr1.1:74852519-74852538 MS.gene80063:intron 15.0%
!!! ACTTTTACTATAGATATTAT+TGG + chr1.1:74852038-74852057 MS.gene80063:intron 15.0%
!!! ATAAAACAATTTAGGATATT+AGG - chr1.1:74851364-74851383 None:intergenic 15.0%
!!! ATTTTACAAATATTTTAGAG+AGG + chr1.1:74852575-74852594 MS.gene80063:intron 15.0%
!!! TTTTTTTTTTAAATTGGGTA+AGG + chr1.1:74852490-74852509 MS.gene80063:intron 15.0%
!! AAAAAAATATGTTGTCTTCT+TGG + chr1.1:74852785-74852804 MS.gene80063:intron 20.0%
!! AAGAAAAAAAAAGAAATCCA+AGG - chr1.1:74851164-74851183 None:intergenic 20.0%
!! AATCATATATTTATAGACGA+AGG - chr1.1:74850396-74850415 None:intergenic 20.0%
!! ACAAAATGATAGGTAATATT+AGG - chr1.1:74849370-74849389 None:intergenic 20.0%
!! ACATGTAACATATCAAATAT+TGG + chr1.1:74849922-74849941 MS.gene80063:CDS 20.0%
!! ACTATAGATATTATTGGAAT+GGG + chr1.1:74852044-74852063 MS.gene80063:intron 20.0%
!! ATCATATATTTATAGACGAA+GGG - chr1.1:74850395-74850414 None:intergenic 20.0%
!! ATGTTAAATTGATTGACAAT+TGG + chr1.1:74850458-74850477 MS.gene80063:intron 20.0%
!! ATTATATGGACTTATTTCAA+TGG + chr1.1:74852343-74852362 MS.gene80063:intron 20.0%
!! CCAAAGTAATATAAATTCTA+AGG - chr1.1:74851197-74851216 None:intergenic 20.0%
!! CCTTAGAATTTATATTACTT+TGG + chr1.1:74851194-74851213 MS.gene80063:intron 20.0%
!! CTATAAATGCTCTTATATTT+AGG + chr1.1:74850636-74850655 MS.gene80063:intron 20.0%
!! GATAAGTTCTACATATTATA+TGG + chr1.1:74852329-74852348 MS.gene80063:intron 20.0%
!! TAATAAAAAAATTAGGAAGG+GGG + chr1.1:74852520-74852539 MS.gene80063:intron 20.0%
!! TACTATAGATATTATTGGAA+TGG + chr1.1:74852043-74852062 MS.gene80063:intron 20.0%
!! TATGGTAATTCTACTTAATT+AGG + chr1.1:74852676-74852695 MS.gene80063:intron 20.0%
!! TATGTATAATGATAGATACA+GGG + chr1.1:74849834-74849853 MS.gene80063:CDS 20.0%
!! TTATGTATAATGATAGATAC+AGG + chr1.1:74849833-74849852 MS.gene80063:CDS 20.0%
!!! AATTTTCAATCTTCAAGTAA+AGG + chr1.1:74849883-74849902 MS.gene80063:CDS 20.0%
!!! ACAATTGGTATTATTTTATC+AGG + chr1.1:74850473-74850492 MS.gene80063:intron 20.0%
!!! ACTTTTGTTTTTTACTTTAG+TGG + chr1.1:74851932-74851951 MS.gene80063:intron 20.0%
!!! ATTTTCAATCTTCAAGTAAA+GGG + chr1.1:74849884-74849903 MS.gene80063:CDS 20.0%
!!! CTAAATATAAGAGCATTTAT+AGG - chr1.1:74850638-74850657 None:intergenic 20.0%
!!! CTTATTTTTGTAAACTCTTT+AGG + chr1.1:74850832-74850851 MS.gene80063:intron 20.0%
!!! GGAAATTTTATTAATTCAAG+TGG + chr1.1:74852541-74852560 MS.gene80063:intron 20.0%
!!! TAAAAAAAAATTGAGGTGTT+AGG - chr1.1:74852637-74852656 None:intergenic 20.0%
!!! TACTTCAATTTTCATCTTTA+TGG + chr1.1:74852658-74852677 MS.gene80063:intron 20.0%
!!! TCATGTTTTCATAGTAATAT+TGG + chr1.1:74850522-74850541 MS.gene80063:intron 20.0%
!!! TTGAAGCTATTTGAAATATA+TGG + chr1.1:74850683-74850702 MS.gene80063:intron 20.0%
!!! TTGAATTTTGAATATGTAAG+AGG - chr1.1:74849619-74849638 None:intergenic 20.0%
!!! TTTATCATTTTGCTATTGTA+AGG - chr1.1:74851294-74851313 None:intergenic 20.0%
!!! TTTTTCTTGATCCTTTTTAT+AGG - chr1.1:74850615-74850634 None:intergenic 20.0%
! AAAAGCTCAATGAATGTAAA+CGG - chr1.1:74849580-74849599 None:intergenic 25.0%
! ACCTATGCATAAAACAATTT+AGG - chr1.1:74851372-74851391 None:intergenic 25.0%
! ACTACGATTATATTCTTGAT+TGG + chr1.1:74851077-74851096 MS.gene80063:CDS 25.0%
! CATCTTTCTGACTTATTATA+GGG - chr1.1:74851846-74851865 None:intergenic 25.0%
! CTAAAATACCATTCTAATGT+AGG - chr1.1:74850123-74850142 None:intergenic 25.0%
! CTAACTTTGTCAGTTTATTA+GGG - chr1.1:74851710-74851729 None:intergenic 25.0%
! CTACGATTATATTCTTGATT+GGG + chr1.1:74851078-74851097 MS.gene80063:CDS 25.0%
! CTATAATAAGTCAGAAAGAT+GGG + chr1.1:74851845-74851864 MS.gene80063:CDS 25.0%
! GCTTATTATTTAACCAAACA+GGG + chr1.1:74850949-74850968 MS.gene80063:intron 25.0%
! GGATGAATCAGTAAATATTT+GGG + chr1.1:74849756-74849775 MS.gene80063:CDS 25.0%
! GTATCAGATAAAATCTACAA+AGG + chr1.1:74849541-74849560 MS.gene80063:CDS 25.0%
! TAAAAAACAAAAGTTACCTC+TGG - chr1.1:74851926-74851945 None:intergenic 25.0%
! TCTATAGTAAAAGTGGTATA+CGG - chr1.1:74852032-74852051 None:intergenic 25.0%
! TGCTTATTATTTAACCAAAC+AGG + chr1.1:74850948-74850967 MS.gene80063:intron 25.0%
! TTCAACATCAACAAAATGAT+AGG - chr1.1:74849380-74849399 None:intergenic 25.0%
!! ATCAGGTTTTCTATTTAGAA+GGG + chr1.1:74850490-74850509 MS.gene80063:intron 25.0%
!! CAAATGCTCTTTCTTTTATT+TGG - chr1.1:74851446-74851465 None:intergenic 25.0%
!! CTACATTAGAATGGTATTTT+AGG + chr1.1:74850121-74850140 MS.gene80063:CDS 25.0%
!! TAATATTGGTTACATGTTGT+AGG + chr1.1:74850536-74850555 MS.gene80063:intron 25.0%
!! TATCAGGTTTTCTATTTAGA+AGG + chr1.1:74850489-74850508 MS.gene80063:intron 25.0%
!! TTATACAAAGTATCAAGTGT+GGG + chr1.1:74851815-74851834 MS.gene80063:CDS 25.0%
!!! ATGGTATTTTAGGACTTTTA+TGG + chr1.1:74850131-74850150 MS.gene80063:CDS 25.0%
!!! ATTTGGTTTTTATGTGTGTA+TGG - chr1.1:74851429-74851448 None:intergenic 25.0%
!!! CAAATAAAAGAAAGAGCATT+TGG + chr1.1:74851444-74851463 MS.gene80063:CDS 25.0%
!!! CTTGTTTTGTTTATTTCAGT+TGG - chr1.1:74849313-74849332 None:intergenic 25.0%
!!! TAAATTGTTTTATGCATAGG+TGG + chr1.1:74851371-74851390 MS.gene80063:intron 25.0%
!!! TCCTAAATTGTTTTATGCAT+AGG + chr1.1:74851368-74851387 MS.gene80063:intron 25.0%
!!! TTTAGGACATTGTTTTTGTT+TGG - chr1.1:74849406-74849425 None:intergenic 25.0%
!!! TTTGGTTTTTATGTGTGTAT+GGG - chr1.1:74851428-74851447 None:intergenic 25.0%
!!! TTTTTTCTACAGATAAGAGA+TGG + chr1.1:74851007-74851026 MS.gene80063:intron 25.0%
AAAAGACCATGAAGTGAAAT+GGG + chr1.1:74849954-74849973 MS.gene80063:CDS 30.0%
AAATTTGTACCTTCAGCTTT+AGG - chr1.1:74849868-74849887 None:intergenic 30.0%
AATATAGGAGAGTGATGTAT+AGG + chr1.1:74850061-74850080 MS.gene80063:CDS 30.0%
AATCAACAATCCCACAAAAT+TGG + chr1.1:74850335-74850354 MS.gene80063:CDS 30.0%
AATCAGTAAATATTTGGGCA+CGG + chr1.1:74849761-74849780 MS.gene80063:CDS 30.0%
AATCCAAGGTAAAATAGTTG+TGG - chr1.1:74851150-74851169 None:intergenic 30.0%
ACAAAAACAATGTCCTAAAG+TGG + chr1.1:74849407-74849426 MS.gene80063:CDS 30.0%
ACAAAGTTAGGTAATCAAGT+GGG + chr1.1:74851720-74851739 MS.gene80063:CDS 30.0%
ACTGGAAAATCTTCTTGATA+AGG - chr1.1:74852953-74852972 None:intergenic 30.0%
AGGTGTTAAGATATGATGTA+CGG - chr1.1:74852004-74852023 None:intergenic 30.0%
AGTAATGTGATTCCTTCAAT+AGG - chr1.1:74849787-74849806 None:intergenic 30.0%
ATAGTTCAACAATCTTACCT+TGG + chr1.1:74849337-74849356 MS.gene80063:CDS 30.0%
ATATAGGAGAGTGATGTATA+GGG + chr1.1:74850062-74850081 MS.gene80063:CDS 30.0%
CCATCTTTCTGACTTATTAT+AGG - chr1.1:74851847-74851866 None:intergenic 30.0%
CCTAACTTTGTCAGTTTATT+AGG - chr1.1:74851711-74851730 None:intergenic 30.0%
CCTAATAAACTGACAAAGTT+AGG + chr1.1:74851708-74851727 MS.gene80063:CDS 30.0%
CCTATAATAAGTCAGAAAGA+TGG + chr1.1:74851844-74851863 MS.gene80063:CDS 30.0%
CTCTTATATTTAGGGATGAA+GGG + chr1.1:74850645-74850664 MS.gene80063:intron 30.0%
CTTATCTATTAGCATAGCAT+AGG + chr1.1:74850746-74850765 MS.gene80063:intron 30.0%
GATAAAATCTACAAAGGTCA+CGG + chr1.1:74849547-74849566 MS.gene80063:CDS 30.0%
GGGATGAATCAGTAAATATT+TGG + chr1.1:74849755-74849774 MS.gene80063:CDS 30.0%
GGTCAAGATAATATGTTACA+AGG - chr1.1:74851512-74851531 None:intergenic 30.0%
TAAAAGACCATGAAGTGAAA+TGG + chr1.1:74849953-74849972 MS.gene80063:CDS 30.0%
TAATATTAGGAATAGCACCA+AGG - chr1.1:74849357-74849376 None:intergenic 30.0%
TATTTGCACTTAGAGACATT+TGG + chr1.1:74850708-74850727 MS.gene80063:intron 30.0%
TGTTTGTCCAATTCAAAGTT+CGG - chr1.1:74852868-74852887 None:intergenic 30.0%
TTAACTATTAACAGCTCAGT+TGG - chr1.1:74851687-74851706 None:intergenic 30.0%
TTATTTCAGTTGGAGATAGA+GGG - chr1.1:74849303-74849322 None:intergenic 30.0%
TTGCATTATCATCAATGTCA+AGG - chr1.1:74851533-74851552 None:intergenic 30.0%
TTTATCAAACCTTGATGCTA+TGG - chr1.1:74849197-74849216 None:intergenic 30.0%
TTTATTTCAGTTGGAGATAG+AGG - chr1.1:74849304-74849323 None:intergenic 30.0%
! ATAGAAGCATGACACTTTAA+GGG - chr1.1:74849734-74849753 None:intergenic 30.0%
! CTTATACAAAGTATCAAGTG+TGG + chr1.1:74851814-74851833 MS.gene80063:CDS 30.0%
! GTTACATGTAGCAACTATTT+TGG - chr1.1:74849911-74849930 None:intergenic 30.0%
! TAAAGTGTCATGCTTCTATA+GGG + chr1.1:74849735-74849754 MS.gene80063:CDS 30.0%
! TATAGAAGCATGACACTTTA+AGG - chr1.1:74849735-74849754 None:intergenic 30.0%
! TTAAAGTGTCATGCTTCTAT+AGG + chr1.1:74849734-74849753 MS.gene80063:CDS 30.0%
! TTAGGACTTTTATGGATGTT+GGG + chr1.1:74850139-74850158 MS.gene80063:CDS 30.0%
! TTTCACTTCATGGTCTTTTA+TGG - chr1.1:74849953-74849972 None:intergenic 30.0%
!! AGTGTATATGGATGGTTTTA+TGG + chr1.1:74850224-74850243 MS.gene80063:CDS 30.0%
!! TTTAGGACTTTTATGGATGT+TGG + chr1.1:74850138-74850157 MS.gene80063:CDS 30.0%
!!! GGTCTTAAGTTGTTTTTCTT+TGG + chr1.1:74850970-74850989 MS.gene80063:intron 30.0%
AAAAGTGGCAGCATAAAAGT+TGG + chr1.1:74851109-74851128 MS.gene80063:CDS 35.0%
AAACAACTTAAGACCCTGTT+TGG - chr1.1:74850965-74850984 None:intergenic 35.0%
AAAGACCATGAAGTGAAATG+GGG + chr1.1:74849955-74849974 MS.gene80063:CDS 35.0%
AAAGAGTCAATTGCCAAAAG+GGG + chr1.1:74849637-74849656 MS.gene80063:CDS 35.0%
AAAGTGGCAGCATAAAAGTT+GGG + chr1.1:74851110-74851129 MS.gene80063:CDS 35.0%
AACATATATACTAGCCAGGT+AGG - chr1.1:74851222-74851241 None:intergenic 35.0%
AACTAGACATTGTGCAATCA+TGG - chr1.1:74849227-74849246 None:intergenic 35.0%
AATTACCCCATTTCACTTCA+TGG - chr1.1:74849963-74849982 None:intergenic 35.0%
ACAATCCCACAAAATTGGTA+AGG + chr1.1:74850340-74850359 MS.gene80063:intron 35.0%
ACATGGATCCTACATTAGAA+TGG + chr1.1:74850112-74850131 MS.gene80063:CDS 35.0%
ATGAAGTGAAATGGGGTAAT+TGG + chr1.1:74849962-74849981 MS.gene80063:CDS 35.0%
CAAAGAGTCAATTGCCAAAA+GGG + chr1.1:74849636-74849655 MS.gene80063:CDS 35.0%
CAACAACATATATACTAGCC+AGG - chr1.1:74851226-74851245 None:intergenic 35.0%
CATCAATGCAAAGTTGCAAA+AGG + chr1.1:74851560-74851579 MS.gene80063:CDS 35.0%
CTTCTTGATAAGGAACATGA+TGG - chr1.1:74852943-74852962 None:intergenic 35.0%
GAACTTTGAATTGGACAAAC+AGG + chr1.1:74852867-74852886 MS.gene80063:intron 35.0%
GACAAAGTTAGGTAATCAAG+TGG + chr1.1:74851719-74851738 MS.gene80063:CDS 35.0%
GCTCTTATATTTAGGGATGA+AGG + chr1.1:74850644-74850663 MS.gene80063:intron 35.0%
GGTATGGAGAAAAAATCACA+AGG + chr1.1:74849704-74849723 MS.gene80063:CDS 35.0%
GGTGTTAAGATATGATGTAC+GGG - chr1.1:74852003-74852022 None:intergenic 35.0%
GTATAAGAAGCTCTTCTTTG+TGG - chr1.1:74851801-74851820 None:intergenic 35.0%
GTGATCATGATAATCAGCTA+TGG - chr1.1:74851490-74851509 None:intergenic 35.0%
GTTACATGTTGTAGGTTTGT+TGG + chr1.1:74850544-74850563 MS.gene80063:intron 35.0%
TAGGAACTTACAAGACTTTG+AGG + chr1.1:74850765-74850784 MS.gene80063:intron 35.0%
TAGTAGATGACAACCACTTT+AGG - chr1.1:74849423-74849442 None:intergenic 35.0%
TATAGGAGAGTGATGTATAG+GGG + chr1.1:74850063-74850082 MS.gene80063:CDS 35.0%
TCAAAAATGCAAATAGCCCT+TGG - chr1.1:74850279-74850298 None:intergenic 35.0%
TCAAAGAGTCAATTGCCAAA+AGG + chr1.1:74849635-74849654 MS.gene80063:CDS 35.0%
TCATCCAACAAAGAAGTAAC+CGG - chr1.1:74851768-74851787 None:intergenic 35.0%
TCTAATGTAGGATCCATGTA+AGG - chr1.1:74850111-74850130 None:intergenic 35.0%
TCTATTGCCGAACTTTGAAT+TGG + chr1.1:74852858-74852877 MS.gene80063:intron 35.0%
TCTTGTGTACCATTCACAAT+TGG + chr1.1:74849679-74849698 MS.gene80063:CDS 35.0%
TGAAGTGAAATGGGGTAATT+GGG + chr1.1:74849963-74849982 MS.gene80063:CDS 35.0%
TGAGACATTTGTTCCTTACA+TGG + chr1.1:74850095-74850114 MS.gene80063:CDS 35.0%
TTGCTTTCGAAAAAGTTAGC+TGG - chr1.1:74853010-74853029 None:intergenic 35.0%
TTTATGGATGTTGGGGAATT+TGG + chr1.1:74850147-74850166 MS.gene80063:CDS 35.0%
! AAAAGTGGTATACGGTGTTA+AGG - chr1.1:74852024-74852043 None:intergenic 35.0%
! ACAAGACTTTGAGGAGTTTA+TGG + chr1.1:74850774-74850793 MS.gene80063:intron 35.0%
! AGACAAATATAAGCCCCTTT+TGG - chr1.1:74849653-74849672 None:intergenic 35.0%
! AGACACCTTACCAATTTTGT+GGG - chr1.1:74850348-74850367 None:intergenic 35.0%
! ATATTACTTTGGTTCCTACC+TGG + chr1.1:74851205-74851224 MS.gene80063:intron 35.0%
! GTAATTGGGCTTTTCATGTA+GGG + chr1.1:74849977-74849996 MS.gene80063:CDS 35.0%
! GTACCACAACTATTTTACCT+TGG + chr1.1:74851144-74851163 MS.gene80063:intron 35.0%
! TAGGACTTTTATGGATGTTG+GGG + chr1.1:74850140-74850159 MS.gene80063:CDS 35.0%
! TATGGTATTTTCTGCCACTA+AGG - chr1.1:74851472-74851491 None:intergenic 35.0%
!!! GTATATGGATGGTTTTATGG+CGG + chr1.1:74850227-74850246 MS.gene80063:CDS 35.0%
!!! TATATGGATGGTTTTATGGC+GGG + chr1.1:74850228-74850247 MS.gene80063:CDS 35.0%
AAGGTAGTTGTTAGAGCCAA+AGG + chr1.1:74849475-74849494 MS.gene80063:CDS 40.0%
AAGTGGCAGCATAAAAGTTG+GGG + chr1.1:74851111-74851130 MS.gene80063:CDS 40.0%
AATAAAAGAAGCCGCCAAGA+GGG + chr1.1:74851629-74851648 MS.gene80063:CDS 40.0%
AATAAGTCAGAAAGATGGGC+TGG + chr1.1:74851849-74851868 MS.gene80063:CDS 40.0%
ACAACCGGTTACTTCTTTGT+TGG + chr1.1:74851761-74851780 MS.gene80063:CDS 40.0%
AGAATACAGACATAGTGCTG+TGG + chr1.1:74852903-74852922 MS.gene80063:CDS 40.0%
AGAGGCTGATATAACTTTGG+TGG + chr1.1:74851030-74851049 MS.gene80063:CDS 40.0%
AGCTCAATGAATGTAAACGG+AGG - chr1.1:74849577-74849596 None:intergenic 40.0%
CCATACCAACCAATTGTGAA+TGG - chr1.1:74849691-74849710 None:intergenic 40.0%
GATTGGGAATTCCTGAAAAG+TGG + chr1.1:74851094-74851113 MS.gene80063:CDS 40.0%
GCTCAATGAATGTAAACGGA+GGG - chr1.1:74849576-74849595 None:intergenic 40.0%
GGAAATGCAGTGTATATGGA+TGG + chr1.1:74850216-74850235 MS.gene80063:CDS 40.0%
GTCAGAATGATTGCTACTGT+GGG + chr1.1:74851052-74851071 MS.gene80063:CDS 40.0%
GTGTACCATTCACAATTGGT+TGG + chr1.1:74849683-74849702 MS.gene80063:CDS 40.0%
TAATAAAAGAAGCCGCCAAG+AGG + chr1.1:74851628-74851647 MS.gene80063:CDS 40.0%
TAGTATTCCTAGACAAGCCA+AGG + chr1.1:74849456-74849475 MS.gene80063:CDS 40.0%
TCCATATACACTGCATTTCC+CGG - chr1.1:74850216-74850235 None:intergenic 40.0%
TCTACAGATAAGAGATGGAG+AGG + chr1.1:74851012-74851031 MS.gene80063:intron 40.0%
TGGAGAGGCTGATATAACTT+TGG + chr1.1:74851027-74851046 MS.gene80063:CDS 40.0%
TTGCAAAAGGTCAAAGCAAG+TGG + chr1.1:74851573-74851592 MS.gene80063:CDS 40.0%
TTGGAGATAGAGGGTCTAAA+GGG - chr1.1:74849294-74849313 None:intergenic 40.0%
! ACTTGTTGCACTTCTCCATT+AGG - chr1.1:74850255-74850274 None:intergenic 40.0%
! AGAAGTGCAACAAGTACCAA+GGG + chr1.1:74850260-74850279 MS.gene80063:CDS 40.0%
! CAGACACCTTACCAATTTTG+TGG - chr1.1:74850349-74850368 None:intergenic 40.0%
! CCATTCACAATTGGTTGGTA+TGG + chr1.1:74849688-74849707 MS.gene80063:CDS 40.0%
! GGTAATTGGGCTTTTCATGT+AGG + chr1.1:74849976-74849995 MS.gene80063:CDS 40.0%
!! AAGAGCATTTGGAACCTTAG+TGG + chr1.1:74851455-74851474 MS.gene80063:CDS 40.0%
!! CTAGTGGTGGACTTAACAAA+AGG + chr1.1:74849511-74849530 MS.gene80063:CDS 40.0%
!! GATGTTGGGGAATTTGGTTT+TGG + chr1.1:74850153-74850172 MS.gene80063:CDS 40.0%
!! GGGCTATTTGCATTTTTGAG+AGG + chr1.1:74850280-74850299 MS.gene80063:CDS 40.0%
!! TAGGTAATCAAGTGGGTTAC+CGG + chr1.1:74851727-74851746 MS.gene80063:CDS 40.0%
!! TGCATTTTTGAGAGGACTTC+TGG + chr1.1:74850288-74850307 MS.gene80063:CDS 40.0%
!! TTGGCTTGTCTAGGAATACT+AGG - chr1.1:74849457-74849476 None:intergenic 40.0%
!! TTTGGCTCTAACAACTACCT+TGG - chr1.1:74849476-74849495 None:intergenic 40.0%
!!! ATATGGATGGTTTTATGGCG+GGG + chr1.1:74850229-74850248 MS.gene80063:CDS 40.0%
!!! CTTTTATGCTGCCACTTTTC+AGG - chr1.1:74851108-74851127 None:intergenic 40.0%
AAGGTCAAAGCAAGTGGCTT+TGG + chr1.1:74851579-74851598 MS.gene80063:CDS 45.0%
ACCAAGGAAGAGTTACTGGA+CGG + chr1.1:74851605-74851624 MS.gene80063:CDS 45.0%
AGAGAGGATTCGAACGAACT+CGG + chr1.1:74852591-74852610 MS.gene80063:intron 45.0%
CCAGTAATGCCAACAGTTCA+GGG + chr1.1:74852968-74852987 MS.gene80063:CDS 45.0%
CCATATACACTGCATTTCCC+GGG - chr1.1:74850215-74850234 None:intergenic 45.0%
GAACACCAAGGAAGAGTTAC+TGG + chr1.1:74851601-74851620 MS.gene80063:CDS 45.0%
GGTCAGAATGATTGCTACTG+TGG + chr1.1:74851051-74851070 MS.gene80063:CDS 45.0%
GTACCTATGCCTAAAGCTGA+AGG + chr1.1:74849856-74849875 MS.gene80063:CDS 45.0%
GTAGGGTTTAATGCTAGAGC+AGG + chr1.1:74849994-74850013 MS.gene80063:CDS 45.0%
GTTGGAGATAGAGGGTCTAA+AGG - chr1.1:74849295-74849314 None:intergenic 45.0%
TAAGTCCACCACTAGCTCAT+GGG - chr1.1:74849506-74849525 None:intergenic 45.0%
TAGCTCATGGGTTTCACCTT+TGG - chr1.1:74849494-74849513 None:intergenic 45.0%
TCAAAACCACCCTGAACTGT+TGG - chr1.1:74852980-74852999 None:intergenic 45.0%
TCCAGTAATGCCAACAGTTC+AGG + chr1.1:74852967-74852986 MS.gene80063:CDS 45.0%
TTAAGTCCACCACTAGCTCA+TGG - chr1.1:74849507-74849526 None:intergenic 45.0%
! AAGTTACCTCTGGCTCCAAA+CGG - chr1.1:74851916-74851935 None:intergenic 45.0%
! GAGAAGTGCAACAAGTACCA+AGG + chr1.1:74850259-74850278 MS.gene80063:CDS 45.0%
! TAATGTGGCTTGGAGACACA+TGG + chr1.1:74850311-74850330 MS.gene80063:CDS 45.0%
! TGAGAGGACTTCTGGTAATG+TGG + chr1.1:74850296-74850315 MS.gene80063:CDS 45.0%
!! ACAACTACCTTGGCTTGTCT+AGG - chr1.1:74849466-74849485 None:intergenic 45.0%
!! GTACCTTCAGCTTTAGGCAT+AGG - chr1.1:74849862-74849881 None:intergenic 45.0%
!! TATGCATAGGTGGCTCTAAC+AGG + chr1.1:74851381-74851400 MS.gene80063:intron 45.0%
!!! TTCAGGGTGGTTTTGAACTC+AGG + chr1.1:74852984-74853003 MS.gene80063:CDS 45.0%
!!! CAATTTTTTTTTTTTAAATT+GGG + chr1.1:74852485-74852504 MS.gene80063:intron 5.0%
!!! TCAATTTTTTTTTTTTAAAT+TGG + chr1.1:74852484-74852503 MS.gene80063:intron 5.0%
ACCGTCCAGTAACTCTTCCT+TGG - chr1.1:74851609-74851628 None:intergenic 50.0%
AGGTGAAACCCATGAGCTAG+TGG + chr1.1:74849495-74849514 MS.gene80063:CDS 50.0%
ATAGTGCTGTGGCACACAGT+TGG + chr1.1:74852914-74852933 MS.gene80063:CDS 50.0%
ATTTCCCGGGCAATCAACCT+TGG - chr1.1:74850202-74850221 None:intergenic 50.0%
ATTTGGGCACGGCCTATTGA+AGG + chr1.1:74849772-74849791 MS.gene80063:CDS 50.0%
CCCGGGAAATGCAGTGTATA+TGG + chr1.1:74850212-74850231 MS.gene80063:CDS 50.0%
CCCTGAACTGTTGGCATTAC+TGG - chr1.1:74852971-74852990 None:intergenic 50.0%
CCGGTTGTCCACTAATCAAC+CGG - chr1.1:74851749-74851768 None:intergenic 50.0%
CTGGAGGGTTCTATGCTGAT+AGG + chr1.1:74851868-74851887 MS.gene80063:CDS 50.0%
GATAGAGGGTCTAAAGGGTG+AGG - chr1.1:74849289-74849308 None:intergenic 50.0%
GCTGAGGCTAGAATTAGGCT+CGG + chr1.1:74851654-74851673 MS.gene80063:CDS 50.0%
GGGAAGCTGAGGCTAGAATT+AGG + chr1.1:74851649-74851668 MS.gene80063:CDS 50.0%
GTAATGCCAACAGTTCAGGG+TGG + chr1.1:74852971-74852990 MS.gene80063:CDS 50.0%
TGAAACCCATGAGCTAGTGG+TGG + chr1.1:74849498-74849517 MS.gene80063:CDS 50.0%
TTCTATGCTGATAGGAGCCG+TGG + chr1.1:74851876-74851895 MS.gene80063:CDS 50.0%
TTTCCCGGGCAATCAACCTT+GGG - chr1.1:74850201-74850220 None:intergenic 50.0%
! AGCTGATAGCTTGCAACCCA+AGG + chr1.1:74850182-74850201 MS.gene80063:CDS 50.0%
! CCGGTTGATTAGTGGACAAC+CGG + chr1.1:74851746-74851765 MS.gene80063:CDS 50.0%
! GAGATGATGGCTTAGCCGTT+TGG + chr1.1:74851898-74851917 MS.gene80063:CDS 50.0%
! GGACTTCTGGTAATGTGGCT+TGG + chr1.1:74850301-74850320 MS.gene80063:CDS 50.0%
! GTGGGTTACCGGTTGATTAG+TGG + chr1.1:74851738-74851757 MS.gene80063:CDS 50.0%
!! AAGTCAGAAAGATGGGCTGG+AGG + chr1.1:74851852-74851871 MS.gene80063:CDS 50.0%
!! AGTCAGAAAGATGGGCTGGA+GGG + chr1.1:74851853-74851872 MS.gene80063:CDS 50.0%
!! CAAGTGGCTTTGGAACACCA+AGG + chr1.1:74851589-74851608 MS.gene80063:CDS 50.0%
CGGCTAAGCCATCATCTCCA+CGG - chr1.1:74851896-74851915 None:intergenic 55.0%
GATAGGAGCCGTGGAGATGA+TGG + chr1.1:74851885-74851904 MS.gene80063:CDS 55.0%
TCTAGCCTCAGCTTCCCTCT+TGG - chr1.1:74851646-74851665 None:intergenic 55.0%
! CAACCCAAGGTTGATTGCCC+GGG + chr1.1:74850195-74850214 MS.gene80063:CDS 55.0%
! GCAACCCAAGGTTGATTGCC+CGG + chr1.1:74850194-74850213 MS.gene80063:CDS 55.0%
!! GGTTTTATGGCGGGGCCTAA+TGG + chr1.1:74850237-74850256 MS.gene80063:CDS 55.0%
AGCCTCAGCTTCCCTCTTGG+CGG - chr1.1:74851643-74851662 None:intergenic 60.0%
! GCTTAGCCGTTTGGAGCCAG+AGG + chr1.1:74851907-74851926 MS.gene80063:CDS 60.0%
AGCCGCCAAGAGGGAAGCTG+AGG + chr1.1:74851638-74851657 MS.gene80063:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 74849190 74853042 74849190 ID=MS.gene80063
chr1.1 mRNA 74849190 74853042 74849190 ID=MS.gene80063.t1;Parent=MS.gene80063
chr1.1 exon 74849190 74850356 74849190 ID=MS.gene80063.t1.exon1;Parent=MS.gene80063.t1
chr1.1 CDS 74849190 74850356 74849190 ID=cds.MS.gene80063.t1;Parent=MS.gene80063.t1
chr1.1 exon 74851019 74851132 74851019 ID=MS.gene80063.t1.exon2;Parent=MS.gene80063.t1
chr1.1 CDS 74851019 74851132 74851019 ID=cds.MS.gene80063.t1;Parent=MS.gene80063.t1
chr1.1 exon 74851390 74851928 74851390 ID=MS.gene80063.t1.exon3;Parent=MS.gene80063.t1
chr1.1 CDS 74851390 74851928 74851390 ID=cds.MS.gene80063.t1;Parent=MS.gene80063.t1
chr1.1 exon 74852889 74853042 74852889 ID=MS.gene80063.t1.exon4;Parent=MS.gene80063.t1
chr1.1 CDS 74852889 74853042 74852889 ID=cds.MS.gene80063.t1;Parent=MS.gene80063.t1
Gene Sequence

>MS.gene80063

ATGACCATAGCATCAAGGTTTGATAAAGCAACAACCATGATTGCACAATGTCTAGTTCTAGCATTTTTTCTTCAATTCAACTTCATTAATAGTTTGCCTCACCCTTTAGACCCTCTATCTCCAACTGAAATAAACAAAACAAGACACATAGTTCAACAATCTTACCTTGGTGCTATTCCTAATATTACCTATCATTTTGTTGATGTTGAAGAACCAAACAAAAACAATGTCCTAAAGTGGTTGTCATCTACTACAAAACAAAAGCCTAGTATTCCTAGACAAGCCAAGGTAGTTGTTAGAGCCAAAGGTGAAACCCATGAGCTAGTGGTGGACTTAACAAAAGGCTCAATTGTATCAGATAAAATCTACAAAGGTCACGGATACCCTCCGTTTACATTCATTGAGCTTTTCAAAGCTAGTAAATTGCCTCTTACATATTCAAAATTCAAAGAGTCAATTGCCAAAAGGGGCTTATATTTGTCTGAAATTTCTTGTGTACCATTCACAATTGGTTGGTATGGAGAAAAAATCACAAGGAGAGCCCTTAAAGTGTCATGCTTCTATAGGGATGAATCAGTAAATATTTGGGCACGGCCTATTGAAGGAATCACATTACTAGTTGATGTTGATTTAATGAAGATTATTATGTATAATGATAGATACAGGGTACCTATGCCTAAAGCTGAAGGTACAAATTTTCAATCTTCAAGTAAAGGGTCCAAAATAGTTGCTACATGTAACATATCAAATATTGGATTTACCATAAAAGACCATGAAGTGAAATGGGGTAATTGGGCTTTTCATGTAGGGTTTAATGCTAGAGCAGGAATGATTATATCAACTGCTTCTATATTTGATGATAAAAAACAAAAATATAGGAGAGTGATGTATAGGGGTCATGTGTCTGAGACATTTGTTCCTTACATGGATCCTACATTAGAATGGTATTTTAGGACTTTTATGGATGTTGGGGAATTTGGTTTTGGACGTTCAGCTGATAGCTTGCAACCCAAGGTTGATTGCCCGGGAAATGCAGTGTATATGGATGGTTTTATGGCGGGGCCTAATGGAGAAGTGCAACAAGTACCAAGGGCTATTTGCATTTTTGAGAGGACTTCTGGTAATGTGGCTTGGAGACACATGGAAATCAACAATCCCACAAAATTGGTAAGGTGTCTGTCATATATTATTTTTGTTATACTCCCTTCGTCTATAAATATATGATTTTATTATTGACAAAAATACGAGAATTAATAAAGTCGATAGTTATGTTAAATTGATTGACAATTGGTATTATTTTATCAGGTTTTCTATTTAGAAGGGAAAATTGATTCATGTTTTCATAGTAATATTGGTTACATGTTGTAGGTTTGTTGGTAAAATAAATAAATAATCTAGTTAAAATTTTGAAAAAAAAAAAGTCCTATAAAAAGGATCAAGAAAAACCTATAAATGCTCTTATATTTAGGGATGAAGGGCATTTTCAATTGATGTTGAAGCTATTTGAAATATATGGTCTATTTGCACTTAGAGACATTTGGATTGAAATATTTAAACTTATCTATTAGCATAGCATAGGAACTTACAAGACTTTGAGGAGTTTATGGAATCACTTTTTAACATGTTCATAAGTTGTTTTCAACTTATTTTTGTAAACTCTTTAGGATAATTTATAAAACAGTATATAGCTTATACAAAAACATTTTGATTTTTTTTTTTATAAAGAAAATAGTTTATTCATAAATGTTATGCTCTAAGTGCTTATTATTTAACCAAACAGGGTCTTAAGTTGTTTTTCTTTGGACACATTTGATGTGTTTTTTCTACAGATAAGAGATGGAGAGGCTGATATAACTTTGGTGGTCAGAATGATTGCTACTGTGGGTAACTACGATTATATTCTTGATTGGGAATTCCTGAAAAGTGGCAGCATAAAAGTTGGGGTAAAATTCTTGTACCACAACTATTTTACCTTGGATTTCTTTTTTTTTCTTCGTTGAAAGACCTTAGAATTTATATTACTTTGGTTCCTACCTGGCTAGTATATATGTTGTTGAGTTATTTTTAATTTACTATTCAATTACAAAGGAATATAATCATTCCTTACAATAGCAAAATGATAAATTAATGTAACATACATTTAGTTTTAAGTCAAACAAAAATGCACTCATCCTAATATCCTAAATTGTTTTATGCATAGGTGGCTCTAACAGGTGTATTAGAAATGAAAGCAGTCCCATACACACATAAAAACCAAATAAAAGAAAGAGCATTTGGAACCTTAGTGGCAGAAAATACCATAGCTGATTATCATGATCACCTTGTAACATATTATCTTGACCTTGACATTGATGATAATGCAAACTCATTCATCAATGCAAAGTTGCAAAAGGTCAAAGCAAGTGGCTTTGGAACACCAAGGAAGAGTTACTGGACGGTAATAAAAGAAGCCGCCAAGAGGGAAGCTGAGGCTAGAATTAGGCTCGGCTTAGAGCCAACTGAGCTGTTAATAGTTAACCCTAATAAACTGACAAAGTTAGGTAATCAAGTGGGTTACCGGTTGATTAGTGGACAACCGGTTACTTCTTTGTTGGATGATGATGATTATCCACAAAGAAGAGCTTCTTATACAAAGTATCAAGTGTGGGTTACTCCCTATAATAAGTCAGAAAGATGGGCTGGAGGGTTCTATGCTGATAGGAGCCGTGGAGATGATGGCTTAGCCGTTTGGAGCCAGAGGTAACTTTTGTTTTTTACTTTAGTGGCATTTAAAAAAGTTAGTTGTGTTATTTCGAGTATTTTGAGTCTTTCCCGTACATCATATCTTAACACCTTAACACCGTATACCACTTTTACTATAGATATTATTGGAATGGGAGAGAGAACAAACATTAGAAGAGAGATGAGCATAATTTCAAACTCAAAATTGTATAAATATATGGTATTTGTAAAAAATATTTCTTTAAAAAAGTCTTGCCAAAAATTGTAGATTTATATATTAATTCTTTTAAAAAAATAATACAAAATATCACTTTTTATTTTAGATAATTAGTGATTTGTTTTAGATCTACAAATTTTACTCTTACTGAAATTGATTCTTGTAGTACTCATTTTAATCTTTATTTTAAGAGACTAAAATGATAAGTTCTACATATTATATGGACTTATTTCAATGGAATAAATTTTGAAGAGAATGAAACAAAACAATGAGTATAAAAGTAAAAAGTGATATATTATTAAAACTTAAAAATATTTTTATAAAGATTTAAAAAACAAATGATATATTTTTATGTATCAATTTTTTTTTTTTAAATTGGGTAAGGATTTTTTTAATAAAAAAATTAGGAAGGGGGAAATTTTATTAATTCAAGTGGCAATGATGATCATTTTACAAATATTTTAGAGAGGATTCGAACGAACTCGGTAAGACTAAGCTCTTACTAACCTAACACCTCAATTTTTTTTTATTACTTCAATTTTCATCTTTATGGTAATTCTACTTAATTAGGATATAAAAGAATTTAGTGAAAGTTTGTCTGTATAGCAAAAATACTATACTGTATAATATGTTGTCTTCTATTTGTCAAAAAAAAAAAAAAAAATATGTTGTCTTCTTGGTCAATATTTTTAATGAAATAAGAAAAATTCAGCTTATTAATCAAATTCTGTCTATTGCCGAACTTTGAATTGGACAAACAGGAACAGAGAAATTGAGAATACAGACATAGTGCTGTGGCACACAGTTGGAATCCATCATGTTCCTTATCAAGAAGATTTTCCAGTAATGCCAACAGTTCAGGGTGGTTTTGAACTCAGGCCAGCTAACTTTTTCGAAAGCAATCCATTGCTTTGA
Protein sequence

>MS.gene80063.t1

MTIASRFDKATTMIAQCLVLAFFLQFNFINSLPHPLDPLSPTEINKTRHIVQQSYLGAIPNITYHFVDVEEPNKNNVLKWLSSTTKQKPSIPRQAKVVVRAKGETHELVVDLTKGSIVSDKIYKGHGYPPFTFIELFKASKLPLTYSKFKESIAKRGLYLSEISCVPFTIGWYGEKITRRALKVSCFYRDESVNIWARPIEGITLLVDVDLMKIIMYNDRYRVPMPKAEGTNFQSSSKGSKIVATCNISNIGFTIKDHEVKWGNWAFHVGFNARAGMIISTASIFDDKKQKYRRVMYRGHVSETFVPYMDPTLEWYFRTFMDVGEFGFGRSADSLQPKVDCPGNAVYMDGFMAGPNGEVQQVPRAICIFERTSGNVAWRHMEINNPTKLIRDGEADITLVVRMIATVGNYDYILDWEFLKSGSIKVGVALTGVLEMKAVPYTHKNQIKERAFGTLVAENTIADYHDHLVTYYLDLDIDDNANSFINAKLQKVKASGFGTPRKSYWTVIKEAAKREAEARIRLGLEPTELLIVNPNKLTKLGNQVGYRLISGQPVTSLLDDDDYPQRRASYTKYQVWVTPYNKSERWAGGFYADRSRGDDGLAVWSQRNREIENTDIVLWHTVGIHHVPYQEDFPVMPTVQGGFELRPANFFESNPLL