AlfalfaGEDB | MS.gene80152

M. sativa cultivar XinJiangDaYe / MS.gene80152

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80152.t1	XP_003610296.2	75.8	153	13	3	1	129	38	190	4.80E-52	213.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80152.t1	G7JFL0	75.8	153	13	3	1	129	1	153	3.5e-52	213.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049404	MS.gene80152	0.805142	1.54E-49	-1.69E-46
MS.gene051279	MS.gene80152	0.801254	9.82E-49	-1.69E-46
MS.gene052447	MS.gene80152	0.803576	3.26E-49	-1.69E-46
MS.gene053154	MS.gene80152	0.807907	4.02E-50	-1.69E-46
MS.gene059584	MS.gene80152	0.813629	2.32E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80152.t1	MTR_4g130640	75.817	153	13	3	1	129	1	153	9.19e-74	216
MS.gene80152.t1	MTR_7g069410	48.905	137	35	4	1	129	1	110	9.28e-31	106
MS.gene80152.t1	MTR_6g023775	41.237	97	23	2	59	121	65	161	8.18e-14	64.7
MS.gene80152.t1	MTR_7g031710	72.222	36	10	0	92	127	42	77	3.06e-11	55.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 26 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCTTTGAAAAGAAATAAAA+TGG	0.207796	5.1:+42085666	MS.gene80152:CDS
CATCATGTTCTGAGAGAAAT+TGG	0.219553	5.1:+42085623	MS.gene80152:CDS
CTAGTAACACTTTCTTCTAT+TGG	0.245408	5.1:-42084495	None:intergenic
GAAATAAAATGGATCCAAAA+AGG	0.253008	5.1:+42085677	MS.gene80152:CDS
TAGTGGTTTACTATCATCTT+GGG	0.287206	5.1:-42084538	None:intergenic
TTTCACTTATTGAAAATTGC+TGG	0.358067	5.1:+42085577	MS.gene80152:CDS
AATTGCTGGTGAAGGAGTTC+AGG	0.416502	5.1:+42085591	MS.gene80152:CDS
TGAGTTATCTTTAGATGAAC+CGG	0.418024	5.1:+42085753	MS.gene80152:CDS
GCTACAATGTTCTTTGATGA+TGG	0.418641	5.1:+42085784	MS.gene80152:CDS
AACATTGTAGCCTCCAACTC+CGG	0.456994	5.1:-42085772	None:intergenic
ATAGTGGTTTACTATCATCT+TGG	0.457884	5.1:-42084539	None:intergenic
ATCTTTAGATGAACCGGAGT+TGG	0.478188	5.1:+42085759	MS.gene80152:CDS
GTAACACTTTCTTCTATTGG+AGG	0.479958	5.1:-42084492	None:intergenic
AAGATGATAGTAAACCACTA+TGG	0.482539	5.1:+42084541	MS.gene80152:CDS
TTTAGATGAACCGGAGTTGG+AGG	0.500804	5.1:+42085762	MS.gene80152:CDS
ATGTTCTTTGATGATGGAAA+CGG	0.513119	5.1:+42085790	MS.gene80152:CDS
GTGCATACTAATGTTGGAGT+TGG	0.524300	5.1:+42085718	MS.gene80152:CDS
GTTTATGTGCATACTAATGT+TGG	0.532305	5.1:+42085712	MS.gene80152:CDS
AGTGGTTTACTATCATCTTG+GGG	0.567164	5.1:-42084537	None:intergenic
AGAGCAAACACGGATTGTAT+CGG	0.574300	5.1:-42085824	None:intergenic
TTATTGAAAATTGCTGGTGA+AGG	0.583272	5.1:+42085583	MS.gene80152:CDS
TTCTTTGATGATGGAAACGG+AGG	0.597380	5.1:+42085793	MS.gene80152:CDS
GTGCAGAATAATGATTCTGC+AGG	0.611185	5.1:+42084579	MS.gene80152:CDS
TGATGATGGAAACGGAGGAG+AGG	0.621097	5.1:+42085798	MS.gene80152:CDS
TCACTACTTAAGAGCAAACA+CGG	0.643252	5.1:-42085834	None:intergenic
ACAGTGACAAATCTCCATAG+TGG	0.653867	5.1:-42084555	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATATACAAGTTAAAATA+GGG	+	chr5.1:42085287-42085306	MS.gene80152:intron	10.0%
!!	TAAAATATACAAGTTAAAAT+AGG	+	chr5.1:42085286-42085305	MS.gene80152:intron	10.0%
!!	TTATGTAATTTAATATAATC+GGG	+	chr5.1:42085314-42085333	MS.gene80152:intron	10.0%
!!!	AATAATTTTTTTTGTATGTT+CGG	-	chr5.1:42084854-42084873	None:intergenic	10.0%
!!!	ATAACTTGTATATTTTATAT+AGG	-	chr5.1:42085239-42085258	None:intergenic	10.0%
!!!	TTAACTTGTATATTTTATAT+AGG	-	chr5.1:42085283-42085302	None:intergenic	10.0%
!!	AAATATACAAGTTAAAATAG+GGG	+	chr5.1:42085288-42085307	MS.gene80152:intron	15.0%
!!	TATGTAATTTAATATAATCG+GGG	+	chr5.1:42085315-42085334	MS.gene80152:intron	15.0%
!!!	ATCTTTGAAAAGAAATAAAA+TGG	+	chr5.1:42085666-42085685	MS.gene80152:CDS	15.0%
!!	AAATAAAATGGATCCAAAAA+GGG	+	chr5.1:42085678-42085697	MS.gene80152:CDS	20.0%
!!!	ACAATGATGTAGAATATTTT+TGG	-	chr5.1:42085049-42085068	None:intergenic	20.0%
!!!	GGTTTTGATAAATTTGATAT+TGG	-	chr5.1:42084925-42084944	None:intergenic	20.0%
!!!	TGATATTGGTTTTGATAATT+TGG	-	chr5.1:42084911-42084930	None:intergenic	20.0%
!!!	TTTTAATAAACATAATCCCT+TGG	+	chr5.1:42084791-42084810	MS.gene80152:intron	20.0%
!	GAAATAAAATGGATCCAAAA+AGG	+	chr5.1:42085677-42085696	MS.gene80152:CDS	25.0%
!	TCTACTAGTACAATATTATG+TGG	-	chr5.1:42084946-42084965	None:intergenic	25.0%
!	TTAAAAATTTGAATCCACTG+CGG	-	chr5.1:42084777-42084796	None:intergenic	25.0%
!	TTTCACTTATTGAAAATTGC+TGG	+	chr5.1:42085577-42085596	MS.gene80152:CDS	25.0%
!!	TCATGATATATGTTCTAGTT+TGG	-	chr5.1:42084818-42084837	None:intergenic	25.0%
!!!	CATGATATATGTTCTAGTTT+GGG	-	chr5.1:42084817-42084836	None:intergenic	25.0%
!!!	GTAGAATATTTTTGGTTATG+TGG	-	chr5.1:42085041-42085060	None:intergenic	25.0%
	AAGATGATAGTAAACCACTA+TGG	+	chr5.1:42084541-42084560	MS.gene80152:CDS	30.0%
	AATTTGGATTACGAGTTGTA+TGG	-	chr5.1:42084895-42084914	None:intergenic	30.0%
	AGAAAGAAAGAAGACTACAT+TGG	-	chr5.1:42085153-42085172	None:intergenic	30.0%
	ATAGGTGAAATATTAGCTAG+TGG	-	chr5.1:42085221-42085240	None:intergenic	30.0%
	ATAGTGGTTTACTATCATCT+TGG	-	chr5.1:42084542-42084561	None:intergenic	30.0%
	CTAGTAACACTTTCTTCTAT+TGG	-	chr5.1:42084498-42084517	None:intergenic	30.0%
	GTAATTTAATATAATCGGGG+CGG	+	chr5.1:42085318-42085337	MS.gene80152:intron	30.0%
	GTTTATGTGCATACTAATGT+TGG	+	chr5.1:42085712-42085731	MS.gene80152:CDS	30.0%
	TAAAAATTTGAATCCACTGC+GGG	-	chr5.1:42084776-42084795	None:intergenic	30.0%
	TAATTTAATATAATCGGGGC+GGG	+	chr5.1:42085319-42085338	MS.gene80152:intron	30.0%
	TAGTGGTTTACTATCATCTT+GGG	-	chr5.1:42084541-42084560	None:intergenic	30.0%
	TGAGTTATCTTTAGATGAAC+CGG	+	chr5.1:42085753-42085772	MS.gene80152:CDS	30.0%
	TTATTGAAAATTGCTGGTGA+AGG	+	chr5.1:42085583-42085602	MS.gene80152:CDS	30.0%
!!	ATGTTCTTTGATGATGGAAA+CGG	+	chr5.1:42085790-42085809	MS.gene80152:CDS	30.0%
	AAGAAAGAAGACTACATTGG+TGG	-	chr5.1:42085150-42085169	None:intergenic	35.0%
	ACTATTGACCATCTTCAAAG+AGG	+	chr5.1:42085186-42085205	MS.gene80152:intron	35.0%
	AGTGGTTTACTATCATCTTG+GGG	-	chr5.1:42084540-42084559	None:intergenic	35.0%
	CTATTGACCATCTTCAAAGA+GGG	+	chr5.1:42085187-42085206	MS.gene80152:intron	35.0%
	GCTACAATGTTCTTTGATGA+TGG	+	chr5.1:42085784-42085803	MS.gene80152:CDS	35.0%
	GTAACACTTTCTTCTATTGG+AGG	-	chr5.1:42084495-42084514	None:intergenic	35.0%
	TTCAATTATTCATCCCCGTT+GGG	-	chr5.1:42084704-42084723	None:intergenic	35.0%
	TTTATCAGGGAATTGGGTTT+GGG	-	chr5.1:42084660-42084679	None:intergenic	35.0%
!	ACTTTTGTCAAAAAGAGGTG+AGG	+	chr5.1:42085533-42085552	MS.gene80152:intron	35.0%
!	GTGCAACTTTTGTCAAAAAG+AGG	+	chr5.1:42085528-42085547	MS.gene80152:intron	35.0%
!	TGTATGTTCGGACGAATTTT+GGG	-	chr5.1:42084842-42084861	None:intergenic	35.0%
!	TTGTATGTTCGGACGAATTT+TGG	-	chr5.1:42084843-42084862	None:intergenic	35.0%
!!	CATCATGTTCTGAGAGAAAT+TGG	+	chr5.1:42085623-42085642	MS.gene80152:CDS	35.0%
!!	TTTCCCCGATTTTAAAGGAT+GGG	-	chr5.1:42085396-42085415	None:intergenic	35.0%
!!	TTTTCCCCGATTTTAAAGGA+TGG	-	chr5.1:42085397-42085416	None:intergenic	35.0%
!!!	GCAGTTTTGGAATATTGGTT+TGG	-	chr5.1:42085007-42085026	None:intergenic	35.0%
!!!	TCGTTGTTTTGATGGTAGTT+TGG	-	chr5.1:42084979-42084998	None:intergenic	35.0%
!!!	TGATGGCAGTTTTGGAATAT+TGG	-	chr5.1:42085012-42085031	None:intergenic	35.0%
!!!	TGGTTATGTCGTTGTTTTGA+TGG	-	chr5.1:42084987-42085006	None:intergenic	35.0%
!!!	TGGTTATGTGGTTGTTTTGA+TGG	-	chr5.1:42085029-42085048	None:intergenic	35.0%
	AAAGAAGACTACATTGGTGG+TGG	-	chr5.1:42085147-42085166	None:intergenic	40.0%
	ACAGTGACAAATCTCCATAG+TGG	-	chr5.1:42084558-42084577	None:intergenic	40.0%
	ATCTTTAGATGAACCGGAGT+TGG	+	chr5.1:42085759-42085778	MS.gene80152:CDS	40.0%
	CAGAATAATGATTCTGCAGG+TGG	+	chr5.1:42084582-42084601	MS.gene80152:intron	40.0%
	CTTTATCAGGGAATTGGGTT+TGG	-	chr5.1:42084661-42084680	None:intergenic	40.0%
	GTGCAGAATAATGATTCTGC+AGG	+	chr5.1:42084579-42084598	MS.gene80152:CDS	40.0%
	GTGCATACTAATGTTGGAGT+TGG	+	chr5.1:42085718-42085737	MS.gene80152:CDS	40.0%
	GTTCAATTATTCATCCCCGT+TGG	-	chr5.1:42084705-42084724	None:intergenic	40.0%
	TCAATTATTCATCCCCGTTG+GGG	-	chr5.1:42084703-42084722	None:intergenic	40.0%
	TCCAAAAAGGGCTGAAGATT+TGG	+	chr5.1:42085690-42085709	MS.gene80152:CDS	40.0%
	TTATCAGGGAATTGGGTTTG+GGG	-	chr5.1:42084659-42084678	None:intergenic	40.0%
!	ACCAAATCTTCAGCCCTTTT+TGG	-	chr5.1:42085694-42085713	None:intergenic	40.0%
!	AGAGCAAACACGGATTGTAT+CGG	-	chr5.1:42085827-42085846	None:intergenic	40.0%
!	GTTACTTCCCTCTTTGAAGA+TGG	-	chr5.1:42085197-42085216	None:intergenic	40.0%
!	TGGGTTTTCCCCGATTTTAA+AGG	-	chr5.1:42085401-42085420	None:intergenic	40.0%
!!	ATATGTTCTAGTTTGGGCCA+AGG	-	chr5.1:42084811-42084830	None:intergenic	40.0%
!!	TATGTTCTAGTTTGGGCCAA+GGG	-	chr5.1:42084810-42084829	None:intergenic	40.0%
!!	TTCCCCGATTTTAAAGGATG+GGG	-	chr5.1:42085395-42085414	None:intergenic	40.0%
!!	TTCTTTGATGATGGAAACGG+AGG	+	chr5.1:42085793-42085812	MS.gene80152:CDS	40.0%
!!!	GGTTGTTTTGATGGCAGTTT+TGG	-	chr5.1:42085020-42085039	None:intergenic	40.0%
	AAACCCAAACCCAGTCAAAG+CGG	+	chr5.1:42085426-42085445	MS.gene80152:intron	45.0%
	AAATCCGCTTTGACTGGGTT+TGG	-	chr5.1:42085433-42085452	None:intergenic	45.0%
	AACATTGTAGCCTCCAACTC+CGG	-	chr5.1:42085775-42085794	None:intergenic	45.0%
	AATCCGCTTTGACTGGGTTT+GGG	-	chr5.1:42085432-42085451	None:intergenic	45.0%
	AATTGCTGGTGAAGGAGTTC+AGG	+	chr5.1:42085591-42085610	MS.gene80152:CDS	45.0%
	ATTTGAATCCACTGCGGGTA+TGG	-	chr5.1:42084771-42084790	None:intergenic	45.0%
	TGATTCTGCAGGTGGAAACT+AGG	+	chr5.1:42084590-42084609	MS.gene80152:intron	45.0%
	TGGAAACTAGGCATGGCATT+GGG	+	chr5.1:42084602-42084621	MS.gene80152:intron	45.0%
	TTTAGATGAACCGGAGTTGG+AGG	+	chr5.1:42085762-42085781	MS.gene80152:CDS	45.0%
	TTTGAATCCACTGCGGGTAT+GGG	-	chr5.1:42084770-42084789	None:intergenic	45.0%
!	AGTTGCACCTTGTTTCCACT+AGG	-	chr5.1:42085516-42085535	None:intergenic	45.0%
!	CTTTGACTGGGTTTGGGTTT+GGG	-	chr5.1:42085426-42085445	None:intergenic	45.0%
!	TAATATAATCGGGGCGGGTT+CGG	+	chr5.1:42085324-42085343	MS.gene80152:intron	45.0%
!!	ACCCCCATCCTTTAAAATCG+GGG	+	chr5.1:42085390-42085409	MS.gene80152:intron	45.0%
!!	CACCCCCATCCTTTAAAATC+GGG	+	chr5.1:42085389-42085408	MS.gene80152:intron	45.0%
!!	CCACCCCCATCCTTTAAAAT+CGG	+	chr5.1:42085388-42085407	MS.gene80152:intron	45.0%
!!	CGATTTTAAAGGATGGGGGT+GGG	-	chr5.1:42085390-42085409	None:intergenic	45.0%
!!	GATTTTAAAGGATGGGGGTG+GGG	-	chr5.1:42085389-42085408	None:intergenic	45.0%
!!	TCCCCGATTTTAAAGGATGG+GGG	-	chr5.1:42085394-42085413	None:intergenic	45.0%
!!	ATTATGTAATTTAATATAAT+CGG	+	chr5.1:42085313-42085332	MS.gene80152:intron	5.0%
	AACCCAAACCCCATCCCAAA+TGG	+	chr5.1:42084722-42084741	MS.gene80152:intron	50.0%
	ACCCAAACCCCATCCCAAAT+GGG	+	chr5.1:42084723-42084742	MS.gene80152:intron	50.0%
	AGGGAATTGGGTTTGGGGAT+GGG	-	chr5.1:42084654-42084673	None:intergenic	50.0%
	ATACCCGAACCCATTTGGGA+TGG	-	chr5.1:42084735-42084754	None:intergenic	50.0%
	GGAAACTAGGCATGGCATTG+GGG	+	chr5.1:42084603-42084622	MS.gene80152:intron	50.0%
	GGGGAAAATCCGCTTTGACT+GGG	-	chr5.1:42085438-42085457	None:intergenic	50.0%
	GTGGAAACTAGGCATGGCAT+TGG	+	chr5.1:42084601-42084620	MS.gene80152:intron	50.0%
	TATTCATCCCCGTTGGGGTA+CGG	-	chr5.1:42084698-42084717	None:intergenic	50.0%
	TGCCATGCCTAGTGGAAACA+AGG	+	chr5.1:42085506-42085525	MS.gene80152:intron	50.0%
	TTGAATCCACTGCGGGTATG+GGG	-	chr5.1:42084769-42084788	None:intergenic	50.0%
!	AACCCATTTGGGATGGGGTT+TGG	-	chr5.1:42084728-42084747	None:intergenic	50.0%
!	AACCCCATCCCAAATGGGTT+CGG	+	chr5.1:42084728-42084747	MS.gene80152:intron	50.0%
!	AATATAATCGGGGCGGGTTC+GGG	+	chr5.1:42085325-42085344	MS.gene80152:intron	50.0%
!	ACCCATTTGGGATGGGGTTT+GGG	-	chr5.1:42084727-42084746	None:intergenic	50.0%
!	ACGGGGCTTTATCAGGGAAT+TGG	-	chr5.1:42084667-42084686	None:intergenic	50.0%
!	ACTGGGTTTGGGTTTGGGTT+TGG	-	chr5.1:42085421-42085440	None:intergenic	50.0%
!	CACCTTGTTTCCACTAGGCA+TGG	-	chr5.1:42085511-42085530	None:intergenic	50.0%
!	CGGATTTTCCCCGTCAAATC+GGG	+	chr5.1:42085446-42085465	MS.gene80152:intron	50.0%
!	CGGGGCTTTATCAGGGAATT+GGG	-	chr5.1:42084666-42084685	None:intergenic	50.0%
!	CTGGGTTTGGGTTTGGGTTT+GGG	-	chr5.1:42085420-42085439	None:intergenic	50.0%
!	GCGGATTTTCCCCGTCAAAT+CGG	+	chr5.1:42085445-42085464	MS.gene80152:intron	50.0%
!	GCTTTGACTGGGTTTGGGTT+TGG	-	chr5.1:42085427-42085446	None:intergenic	50.0%
!	GGATTTTCCCCGTCAAATCG+GGG	+	chr5.1:42085447-42085466	MS.gene80152:intron	50.0%
!	TACCCGAACCCATTTGGGAT+GGG	-	chr5.1:42084734-42084753	None:intergenic	50.0%
!!	CCGATTTTAAAGGATGGGGG+TGG	-	chr5.1:42085391-42085410	None:intergenic	50.0%
!!	TGATGATGGAAACGGAGGAG+AGG	+	chr5.1:42085798-42085817	MS.gene80152:CDS	50.0%
	ATTCATCCCCGTTGGGGTAC+GGG	-	chr5.1:42084697-42084716	None:intergenic	55.0%
	ATTGGGTTTGGGGATGGGGT+AGG	-	chr5.1:42084649-42084668	None:intergenic	55.0%
	CAGGGAATTGGGTTTGGGGA+TGG	-	chr5.1:42084655-42084674	None:intergenic	55.0%
	CGGGGAAAATCCGCTTTGAC+TGG	-	chr5.1:42085439-42085458	None:intergenic	55.0%
	CTGCAGGTGGAAACTAGGCA+TGG	+	chr5.1:42084595-42084614	MS.gene80152:intron	55.0%
	GGGAATTGGGTTTGGGGATG+GGG	-	chr5.1:42084653-42084672	None:intergenic	55.0%
	GGGGATACCCGAACCCATTT+GGG	-	chr5.1:42084739-42084758	None:intergenic	55.0%
	GGTTCTGTTGCCATGCCTAG+TGG	+	chr5.1:42085498-42085517	MS.gene80152:intron	55.0%
	TGAATCCACTGCGGGTATGG+GGG	-	chr5.1:42084768-42084787	None:intergenic	55.0%
	TTTAAAGGATGGGGGTGGGG+CGG	-	chr5.1:42085386-42085405	None:intergenic	55.0%
!	AACTAGGCATGGCATTGGGG+CGG	+	chr5.1:42084606-42084625	MS.gene80152:intron	55.0%
!	ACCCCATCCCAAATGGGTTC+GGG	+	chr5.1:42084729-42084748	MS.gene80152:intron	55.0%
!	ACCCGAACCCATTTGGGATG+GGG	-	chr5.1:42084733-42084752	None:intergenic	55.0%
!	ATATAATCGGGGCGGGTTCG+GGG	+	chr5.1:42085326-42085345	MS.gene80152:intron	55.0%
!	TTTTCCCCGTCAAATCGGGG+CGG	+	chr5.1:42085450-42085469	MS.gene80152:intron	55.0%
	CGGGGATACCCGAACCCATT+TGG	-	chr5.1:42084740-42084759	None:intergenic	60.0%
	TTAAAGGATGGGGGTGGGGC+GGG	-	chr5.1:42085385-42085404	None:intergenic	60.0%
	TTCATCCCCGTTGGGGTACG+GGG	-	chr5.1:42084696-42084715	None:intergenic	60.0%
	TTTCCCCGTCAAATCGGGGC+GGG	+	chr5.1:42085451-42085470	MS.gene80152:intron	60.0%
!	CGGGGAACGGGGCTTTATCA+GGG	-	chr5.1:42084673-42084692	None:intergenic	60.0%
	ATCCACTGCGGGTATGGGGG+CGG	-	chr5.1:42084765-42084784	None:intergenic	65.0%
	ATGGGGGTGGGGCGGGTAAT+GGG	-	chr5.1:42085378-42085397	None:intergenic	65.0%
	GCAACAGAACCCGTACCCGC+GGG	-	chr5.1:42085489-42085508	None:intergenic	65.0%
	GGCAACAGAACCCGTACCCG+CGG	-	chr5.1:42085490-42085509	None:intergenic	65.0%
!	AAATCGGGGCGGGTTCGGGT+GGG	+	chr5.1:42085461-42085480	MS.gene80152:intron	65.0%
!	CCGAACCCGCCCCGATTTGA+CGG	-	chr5.1:42085459-42085478	None:intergenic	65.0%
!	CCGTCAAATCGGGGCGGGTT+CGG	+	chr5.1:42085456-42085475	MS.gene80152:intron	65.0%
!	CGAACCCGCCCCGATTTGAC+GGG	-	chr5.1:42085458-42085477	None:intergenic	65.0%
!	CGTCAAATCGGGGCGGGTTC+GGG	+	chr5.1:42085457-42085476	MS.gene80152:intron	65.0%
!	GAACCCGCCCCGATTTGACG+GGG	-	chr5.1:42085457-42085476	None:intergenic	65.0%
!	GCGGGGAACGGGGCTTTATC+AGG	-	chr5.1:42084674-42084693	None:intergenic	65.0%
	ATCCCCGTTGGGGTACGGGG+CGG	-	chr5.1:42084693-42084712	None:intergenic	70.0%
	GATGGGGGTGGGGCGGGTAA+TGG	-	chr5.1:42085379-42085398	None:intergenic	70.0%
	TCCACTGCGGGTATGGGGGC+GGG	-	chr5.1:42084764-42084783	None:intergenic	70.0%
	TGGGGGTGGGGCGGGTAATG+GGG	-	chr5.1:42085377-42085396	None:intergenic	70.0%
	TTCCCCGCCCCGTACCCCAA+CGG	+	chr5.1:42084686-42084705	MS.gene80152:intron	70.0%
	TTGGGGTACGGGGCGGGGAA+CGG	-	chr5.1:42084686-42084705	None:intergenic	70.0%
!	AATCGGGGCGGGTTCGGGGA+CGG	+	chr5.1:42085330-42085349	MS.gene80152:intron	70.0%
!	CAAATCGGGGCGGGTTCGGG+TGG	+	chr5.1:42085460-42085479	MS.gene80152:intron	70.0%
!	CATGGCATTGGGGCGGAGCG+GGG	+	chr5.1:42084613-42084632	MS.gene80152:intron	70.0%
!	GCATGGCATTGGGGCGGAGC+GGG	+	chr5.1:42084612-42084631	MS.gene80152:intron	70.0%
!	GGCATGGCATTGGGGCGGAG+CGG	+	chr5.1:42084611-42084630	MS.gene80152:intron	70.0%
!	TTCGGGGACGGGTTCGGGGT+GGG	+	chr5.1:42085342-42085361	MS.gene80152:intron	70.0%
	CCACTGCGGGTATGGGGGCG+GGG	-	chr5.1:42084763-42084782	None:intergenic	75.0%
	GCATTGGGGCGGAGCGGGGA+CGG	+	chr5.1:42084617-42084636	MS.gene80152:intron	75.0%
	TCCCCGCCCCGTACCCCAAC+GGG	+	chr5.1:42084687-42084706	MS.gene80152:intron	75.0%
	TCCCCGTTGGGGTACGGGGC+GGG	-	chr5.1:42084692-42084711	None:intergenic	75.0%
	TGGGGTACGGGGCGGGGAAC+GGG	-	chr5.1:42084685-42084704	None:intergenic	75.0%
!	ATCGGGGCGGGTTCGGGGAC+GGG	+	chr5.1:42085331-42085350	MS.gene80152:intron	75.0%
!	CGGGTTCGGGGACGGGTTCG+GGG	+	chr5.1:42085338-42085357	MS.gene80152:intron	75.0%
!	GCGGGTTCGGGGACGGGTTC+GGG	+	chr5.1:42085337-42085356	MS.gene80152:intron	75.0%
!	GGCGGGTTCGGGGACGGGTT+CGG	+	chr5.1:42085336-42085355	MS.gene80152:intron	75.0%
!	GTTCGGGGACGGGTTCGGGG+TGG	+	chr5.1:42085341-42085360	MS.gene80152:intron	75.0%
!	CCCCGCCCCCATACCCGCAG+TGG	+	chr5.1:42084760-42084779	MS.gene80152:intron	80.0%
!	CCCCGCCCCGTACCCCAACG+GGG	+	chr5.1:42084688-42084707	MS.gene80152:intron	80.0%
!	CCCCGTTGGGGTACGGGGCG+GGG	-	chr5.1:42084691-42084710	None:intergenic	80.0%
!	CGGGTGGGTGCCCGCGGGTA+CGG	+	chr5.1:42085476-42085495	MS.gene80152:intron	80.0%
!	CGGGTTCGGGTGGGTGCCCG+CGG	+	chr5.1:42085470-42085489	MS.gene80152:intron	80.0%
!	CTGCGGGTATGGGGGCGGGG+CGG	-	chr5.1:42084760-42084779	None:intergenic	80.0%
!	GGGGTACGGGGCGGGGAACG+GGG	-	chr5.1:42084684-42084703	None:intergenic	80.0%
!	GGGTGGGTGCCCGCGGGTAC+GGG	+	chr5.1:42085477-42085496	MS.gene80152:intron	80.0%
!	GGGTTCGGGTGGGTGCCCGC+GGG	+	chr5.1:42085471-42085490	MS.gene80152:intron	80.0%
!	TGCGGGTATGGGGGCGGGGC+GGG	-	chr5.1:42084759-42084778	None:intergenic	80.0%
!	GCGGGTATGGGGGCGGGGCG+GGG	-	chr5.1:42084758-42084777	None:intergenic	85.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	42084489	42085849	42084489	ID=MS.gene80152
chr5.1	mRNA	42084489	42085849	42084489	ID=MS.gene80152.t1;Parent=MS.gene80152
chr5.1	exon	42084489	42084600	42084489	ID=MS.gene80152.t1.exon1;Parent=MS.gene80152.t1
chr5.1	CDS	42084489	42084600	42084489	ID=cds.MS.gene80152.t1;Parent=MS.gene80152.t1
chr5.1	exon	42085572	42085849	42085572	ID=MS.gene80152.t1.exon2;Parent=MS.gene80152.t1
chr5.1	CDS	42085572	42085849	42085572	ID=cds.MS.gene80152.t1;Parent=MS.gene80152.t1

Gene Sequence

>MS.gene80152

ATGCCTCCAATAGAAGAAAGTGTTACTAGTTCGTTTGCTTCAAAAGAACCCCAAGATGATAGTAAACCACTATGGAGATTTGTCACTGTTGTGCAGAATAATGATTCTGCAGGTGGAAACTAGGCATGGCATTGGGGCGGAGCGGGGACGGTTTTTACCTACCCCATCCCCAAACCCAATTCCCTGATAAAGCCCCGTTCCCCGCCCCGTACCCCAACGGGGATGAATAATTGAACCCAAACCCCATCCCAAATGGGTTCGGGTATCCCCGCCCCGCCCCCATACCCGCAGTGGATTCAAATTTTTAATAAACATAATCCCTTGGCCCAAACTAGAACATATATCATGAACCCAAAATTCGTCCGAACATACAAAAAAAATTATTTCAAATAAAGTGCAGCAACCATACAACTCGTAATCCAAATTATCAAAACCAATATCAAATTTATCAAAACCACATAATATTGTACTAGTAGATAAGAGTTTTCCAAACTACCATCAAAACAACGACATAACCAAACCAATATTCCAAAACTGCCATCAAAACAACCACATAACCAAAAATATTCTACATCATTGTTCATTGAAATTGCTAACTAAGTAGATAAAAATCATTGTTCATTGAAATTGCTAACAAAAGTAGCTAGATAAGCTGCCACCACCAATGTAGTCTTCTTTCTTTCTCTTTTCTCAAAATACTATTGACCATCTTCAAAGAGGGAAGTAACGCCACTAGCTAATATTTCACCTATATAAAATATACAAGTTATAATATAAACATTAATATTTCACCTATATAAAATATACAAGTTAAAATAGGGGTAATTATGTAATTTAATATAATCGGGGCGGGTTCGGGGACGGGTTCGGGGTGGGTACATGTTTCCCCATTACCCGCCCCACCCCCATCCTTTAAAATCGGGGAAAACCCAAACCCAAACCCAAACCCAGTCAAAGCGGATTTTCCCCGTCAAATCGGGGCGGGTTCGGGTGGGTGCCCGCGGGTACGGGTTCTGTTGCCATGCCTAGTGGAAACAAGGTGCAACTTTTGTCAAAAAGAGGTGAGGAGTTCATACTCTATAGCGAGATTTCACTTATTGAAAATTGCTGGTGAAGGAGTTCAGGTATGTTCTTCATCATGTTCTGAGAGAAATTGGAGTACTTACTCTTTTATTCAATCTTTGAAAAGAAATAAAATGGATCCAAAAAGGGCTGAAGATTTGGTTTATGTGCATACTAATGTTGGAGTTGGAATTGAATTAGCTGAGTTATCTTTAGATGAACCGGAGTTGGAGGCTACAATGTTCTTTGATGATGGAAACGGAGGAGAGGAGACCGATACAATCCGTGTTTGCTCTTAA

Protein sequence

>MS.gene80152.t1

MPPIEESVTSSFASKEPQDDSKPLWRFVTVVQNNDSAARFHLLKIAGEGVQVCSSSCSERNWSTYSFIQSLKRNKMDPKRAEDLVYVHTNVGVGIELAELSLDEPELEATMFFDDGNGGEETDTIRVCS