Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80168.t1 | XP_024635874.1 | 97.6 | 715 | 15 | 1 | 1 | 715 | 1 | 713 | 0.00E+00 | 1384.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80168.t1 | Q55680 | 41.4 | 527 | 267 | 9 | 102 | 620 | 62 | 554 | 8.8e-104 | 379.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80168.t1 | A0A396IXW0 | 97.6 | 715 | 15 | 1 | 1 | 715 | 1 | 713 | 0.0e+00 | 1384.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80168.t1 | MTR_3g105760 | 95.664 | 715 | 15 | 2 | 1 | 715 | 1 | 699 | 0.0 | 1400 |
MS.gene80168.t1 | MTR_4g026450 | 36.145 | 581 | 317 | 9 | 87 | 647 | 95 | 641 | 2.00e-122 | 382 |
MS.gene80168.t1 | MTR_0053s0030 | 38.956 | 498 | 268 | 6 | 134 | 629 | 137 | 600 | 2.47e-114 | 360 |
MS.gene80168.t1 | MTR_6g038750 | 39.228 | 492 | 265 | 7 | 131 | 620 | 123 | 582 | 4.62e-109 | 347 |
MS.gene80168.t1 | MTR_1g046620 | 37.059 | 510 | 289 | 7 | 136 | 628 | 183 | 677 | 3.43e-103 | 333 |
MS.gene80168.t1 | MTR_1g009860 | 35.343 | 481 | 294 | 6 | 136 | 611 | 130 | 598 | 4.38e-92 | 300 |
MS.gene80168.t1 | MTR_1g009860 | 35.343 | 481 | 294 | 6 | 136 | 611 | 130 | 598 | 1.27e-91 | 299 |
MS.gene80168.t1 | MTR_1g095480 | 33.991 | 456 | 268 | 5 | 140 | 573 | 203 | 647 | 6.96e-82 | 277 |
MS.gene80168.t1 | MTR_1g095480 | 35.266 | 414 | 243 | 4 | 140 | 539 | 203 | 605 | 7.87e-80 | 267 |
MS.gene80168.t1 | MTR_3g082750 | 37.692 | 390 | 226 | 4 | 134 | 518 | 198 | 575 | 5.76e-78 | 264 |
MS.gene80168.t1 | MTR_3g094740 | 34.382 | 445 | 238 | 12 | 140 | 550 | 207 | 631 | 1.29e-69 | 242 |
MS.gene80168.t1 | MTR_3g094740 | 34.382 | 445 | 238 | 12 | 140 | 550 | 207 | 631 | 1.95e-69 | 242 |
MS.gene80168.t1 | MTR_8g091710 | 32.688 | 465 | 259 | 11 | 140 | 570 | 198 | 642 | 7.18e-69 | 240 |
MS.gene80168.t1 | MTR_0224s0030 | 30.418 | 263 | 161 | 4 | 333 | 573 | 1 | 263 | 4.74e-39 | 146 |
MS.gene80168.t1 | MTR_1g008980 | 27.068 | 399 | 277 | 9 | 124 | 518 | 41 | 429 | 7.19e-37 | 148 |
MS.gene80168.t1 | MTR_5g077080 | 27.273 | 385 | 249 | 11 | 134 | 506 | 81 | 446 | 2.21e-33 | 135 |
MS.gene80168.t1 | MTR_4g104070 | 29.971 | 347 | 197 | 12 | 117 | 435 | 39 | 367 | 3.16e-33 | 134 |
MS.gene80168.t1 | MTR_5g068050 | 24.750 | 400 | 267 | 7 | 140 | 513 | 128 | 519 | 2.67e-31 | 129 |
MS.gene80168.t1 | MTR_3g070410 | 29.762 | 252 | 169 | 3 | 135 | 385 | 85 | 329 | 5.55e-28 | 120 |
MS.gene80168.t1 | MTR_4g091510 | 25.000 | 432 | 284 | 9 | 109 | 514 | 184 | 601 | 7.85e-28 | 119 |
MS.gene80168.t1 | MTR_4g091510 | 25.000 | 432 | 284 | 9 | 109 | 514 | 189 | 606 | 8.56e-28 | 119 |
MS.gene80168.t1 | MTR_8g464860 | 24.390 | 410 | 267 | 9 | 137 | 514 | 199 | 597 | 2.03e-25 | 112 |
MS.gene80168.t1 | MTR_2g011640 | 24.427 | 393 | 263 | 8 | 143 | 514 | 272 | 651 | 9.76e-25 | 110 |
MS.gene80168.t1 | MTR_1g085610 | 23.947 | 380 | 253 | 11 | 124 | 489 | 216 | 573 | 1.63e-13 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80168.t1 | AT5G24970 | 67.215 | 729 | 206 | 8 | 3 | 711 | 2 | 717 | 0.0 | 970 |
MS.gene80168.t1 | AT5G24970 | 69.331 | 688 | 187 | 5 | 39 | 711 | 78 | 756 | 0.0 | 966 |
MS.gene80168.t1 | AT5G24970 | 66.804 | 729 | 206 | 9 | 3 | 711 | 2 | 714 | 0.0 | 958 |
MS.gene80168.t1 | AT1G79600 | 39.243 | 502 | 269 | 7 | 131 | 630 | 141 | 608 | 1.09e-119 | 375 |
MS.gene80168.t1 | AT1G71810 | 38.192 | 542 | 294 | 8 | 89 | 622 | 65 | 573 | 5.77e-116 | 364 |
MS.gene80168.t1 | AT3G24190 | 36.914 | 512 | 291 | 7 | 136 | 630 | 191 | 687 | 4.10e-99 | 323 |
MS.gene80168.t1 | AT4G31390 | 36.581 | 503 | 290 | 10 | 136 | 627 | 166 | 650 | 2.38e-95 | 310 |
MS.gene80168.t1 | AT4G31390 | 34.592 | 503 | 275 | 10 | 136 | 627 | 166 | 625 | 2.50e-85 | 283 |
MS.gene80168.t1 | AT4G31390 | 35.684 | 468 | 272 | 10 | 171 | 627 | 2 | 451 | 5.09e-85 | 277 |
MS.gene80168.t1 | AT2G39190 | 32.867 | 429 | 260 | 4 | 140 | 551 | 202 | 619 | 1.84e-74 | 257 |
MS.gene80168.t1 | AT3G07700 | 35.678 | 398 | 236 | 5 | 129 | 518 | 177 | 562 | 3.06e-74 | 254 |
MS.gene80168.t1 | AT3G07700 | 35.678 | 398 | 236 | 5 | 129 | 518 | 177 | 562 | 3.06e-74 | 254 |
MS.gene80168.t1 | AT3G07700 | 35.678 | 398 | 236 | 5 | 129 | 518 | 177 | 562 | 3.06e-74 | 254 |
MS.gene80168.t1 | AT3G07700 | 33.489 | 427 | 235 | 7 | 129 | 518 | 177 | 591 | 1.05e-68 | 239 |
MS.gene80168.t1 | AT5G64940 | 33.413 | 416 | 230 | 9 | 140 | 520 | 222 | 625 | 6.16e-64 | 227 |
MS.gene80168.t1 | AT5G64940 | 33.413 | 416 | 230 | 9 | 140 | 520 | 222 | 625 | 6.16e-64 | 227 |
MS.gene80168.t1 | AT5G24810 | 26.733 | 303 | 217 | 3 | 135 | 435 | 96 | 395 | 1.81e-32 | 135 |
MS.gene80168.t1 | AT1G65950 | 27.424 | 361 | 225 | 10 | 150 | 494 | 112 | 451 | 5.25e-32 | 130 |
MS.gene80168.t1 | AT1G65950 | 27.548 | 363 | 226 | 10 | 150 | 496 | 112 | 453 | 9.27e-32 | 130 |
MS.gene80168.t1 | AT5G50330 | 28.053 | 303 | 191 | 9 | 147 | 435 | 75 | 364 | 1.09e-31 | 129 |
MS.gene80168.t1 | AT4G24810 | 26.374 | 364 | 230 | 10 | 95 | 434 | 14 | 363 | 3.48e-30 | 125 |
MS.gene80168.t1 | AT4G24810 | 27.891 | 294 | 186 | 9 | 147 | 426 | 32 | 313 | 3.56e-30 | 122 |
MS.gene80168.t1 | AT5G05200 | 24.500 | 400 | 268 | 6 | 140 | 513 | 129 | 520 | 4.01e-30 | 125 |
MS.gene80168.t1 | AT4G24810 | 27.483 | 302 | 192 | 9 | 147 | 434 | 32 | 320 | 7.88e-30 | 123 |
MS.gene80168.t1 | AT4G24810 | 27.483 | 302 | 192 | 9 | 147 | 434 | 32 | 320 | 7.88e-30 | 123 |
MS.gene80168.t1 | AT2G39190 | 38.462 | 156 | 96 | 0 | 140 | 295 | 202 | 357 | 1.68e-29 | 121 |
MS.gene80168.t1 | AT4G24810 | 28.159 | 277 | 174 | 8 | 147 | 410 | 32 | 296 | 5.26e-29 | 118 |
MS.gene80168.t1 | AT4G24810 | 27.184 | 309 | 191 | 10 | 147 | 434 | 32 | 327 | 9.05e-28 | 117 |
MS.gene80168.t1 | AT5G24810 | 24.551 | 334 | 216 | 5 | 135 | 435 | 96 | 426 | 9.35e-28 | 120 |
MS.gene80168.t1 | AT5G50330 | 26.490 | 302 | 181 | 9 | 147 | 435 | 75 | 348 | 1.07e-26 | 114 |
MS.gene80168.t1 | AT1G11390 | 23.750 | 400 | 271 | 6 | 143 | 520 | 219 | 606 | 1.63e-26 | 115 |
MS.gene80168.t1 | AT2G40090 | 27.132 | 258 | 180 | 3 | 135 | 391 | 87 | 337 | 9.93e-23 | 103 |
MS.gene80168.t1 | AT1G61640 | 23.291 | 395 | 267 | 8 | 143 | 514 | 216 | 597 | 1.72e-22 | 102 |
MS.gene80168.t1 | AT1G61640 | 25.159 | 314 | 199 | 8 | 143 | 433 | 216 | 516 | 1.65e-19 | 93.6 |
MS.gene80168.t1 | AT1G61640 | 29.448 | 163 | 104 | 4 | 143 | 295 | 216 | 377 | 1.20e-13 | 74.3 |
Find 151 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTATAGTCCCAATATATTT+TGG | 0.124853 | 3.4:+92354065 | None:intergenic |
GAATCACTGGAAAATAAATT+TGG | 0.170233 | 3.4:-92358566 | MS.gene80168:CDS |
GGCAAATGACTTCCTTTCTT+TGG | 0.174886 | 3.4:-92353044 | MS.gene80168:CDS |
CCTTCGCAAACCGTTTAAAT+TGG | 0.209206 | 3.4:+92354842 | None:intergenic |
GTGATTGATTGTGCATTAAA+TGG | 0.216408 | 3.4:-92351223 | MS.gene80168:CDS |
CATGAATAGAAGCACCAAAT+TGG | 0.239350 | 3.4:+92355174 | None:intergenic |
CTCAAAATTCTTCTCATATC+AGG | 0.250430 | 3.4:+92351947 | None:intergenic |
GCAAATGACTTCCTTTCTTT+GGG | 0.259520 | 3.4:-92353043 | MS.gene80168:CDS |
TCAAAGCTCCCAAAATATAT+TGG | 0.261791 | 3.4:-92354074 | MS.gene80168:CDS |
CTTGGGTCCTTTCTACATTA+AGG | 0.265096 | 3.4:-92356460 | MS.gene80168:intron |
AGCCCTATACAAAGCCAAAA+AGG | 0.282708 | 3.4:+92358487 | None:intergenic |
TTATTTCATTTCATGTCTTC+AGG | 0.299658 | 3.4:-92358460 | MS.gene80168:CDS |
TCAAGAGCTTGCTAAATTAC+AGG | 0.304551 | 3.4:-92355377 | MS.gene80168:intron |
ATAGTAAATTTGTGAACTTC+AGG | 0.310511 | 3.4:+92350508 | None:intergenic |
GCTTTGCTGTTCCATATGAT+TGG | 0.320639 | 3.4:-92354868 | MS.gene80168:CDS |
GTTACAGCTCATCTGCATTC+TGG | 0.320870 | 3.4:-92354949 | MS.gene80168:intron |
AGTGCAACTGAGATTACTTT+AGG | 0.322401 | 3.4:-92358837 | MS.gene80168:CDS |
AATAAATTTGGGATTACTCT+TGG | 0.332032 | 3.4:-92358554 | MS.gene80168:CDS |
CTCCTCCTCCTTGCATAATC+AGG | 0.333771 | 3.4:+92358590 | None:intergenic |
ATTGCAACATCAGTTGAAAA+TGG | 0.333812 | 3.4:+92355212 | None:intergenic |
TCATTAGGACAGGTTTATAA+AGG | 0.334663 | 3.4:-92355110 | MS.gene80168:intron |
AGATGTATCGAAACCCAATT+TGG | 0.342391 | 3.4:-92355188 | MS.gene80168:CDS |
AATTCTCAAGCCCTTCTGTT+TGG | 0.349573 | 3.4:-92351384 | MS.gene80168:CDS |
GAACTTGTCATTCGTAATAA+TGG | 0.366162 | 3.4:-92351923 | MS.gene80168:CDS |
CTTTGCTGTTCCATATGATT+GGG | 0.375820 | 3.4:-92354867 | MS.gene80168:CDS |
CAGTGAGTCTCAAGATTTCC+AGG | 0.378705 | 3.4:-92352942 | MS.gene80168:intron |
AAATGTATATCAACCCCTTC+AGG | 0.380628 | 3.4:+92353013 | None:intergenic |
CAAAGCTCCCAAAATATATT+GGG | 0.384515 | 3.4:-92354073 | MS.gene80168:CDS |
GCGTTCTAGTCACAGATTGC+AGG | 0.387424 | 3.4:-92350461 | MS.gene80168:CDS |
ATTCCTAGGCATTATCGTAT+TGG | 0.390822 | 3.4:-92353581 | MS.gene80168:CDS |
GAAATCGATTATGTCCTAGA+AGG | 0.396929 | 3.4:-92354545 | MS.gene80168:CDS |
ATGCACCACTGTACTGACTA+TGG | 0.398218 | 3.4:-92354043 | MS.gene80168:CDS |
CTTTCAATGACCTTAAAATC+AGG | 0.399857 | 3.4:+92352013 | None:intergenic |
CCTATTGCAGCAGCATCATT+AGG | 0.400240 | 3.4:-92355125 | MS.gene80168:CDS |
AATCACTGGAAAATAAATTT+GGG | 0.401318 | 3.4:-92358565 | MS.gene80168:CDS |
ATTAAGCTTACAGATGAAAC+AGG | 0.402280 | 3.4:-92354006 | MS.gene80168:CDS |
TGCTCTTGTTATAAGAGCAT+TGG | 0.407739 | 3.4:-92352068 | MS.gene80168:CDS |
CCTAATGATGCTGCTGCAAT+AGG | 0.410003 | 3.4:+92355125 | None:intergenic |
TTCAATGCTATATACCGGTT+TGG | 0.412458 | 3.4:-92358512 | MS.gene80168:CDS |
AGAAGGGACAGCTAAAGTTC+TGG | 0.413956 | 3.4:-92352038 | MS.gene80168:CDS |
ATGAATAGAAGCACCAAATT+GGG | 0.419093 | 3.4:+92355175 | None:intergenic |
AGAGCATTGGGATCACTAGA+AGG | 0.419842 | 3.4:-92352055 | MS.gene80168:CDS |
CCAGAGGATATTGCGCTTTG+AGG | 0.420718 | 3.4:-92351188 | MS.gene80168:intron |
TGAACATTTCAGGAGCGTAC+TGG | 0.429436 | 3.4:-92350613 | MS.gene80168:intron |
AACCTTGTTGCGACAAATGA+TGG | 0.435068 | 3.4:-92353641 | MS.gene80168:CDS |
CTTTGGGATTTATTCCTGAA+GGG | 0.436339 | 3.4:-92353027 | MS.gene80168:CDS |
TTTCCATGCTGATCCTCATC+CGG | 0.441250 | 3.4:-92353666 | MS.gene80168:CDS |
TTTGTCGCAACAAGGTTTCC+CGG | 0.442301 | 3.4:+92353647 | None:intergenic |
TCTAGTAGCAGTTAATGAAA+TGG | 0.449408 | 3.4:-92354806 | MS.gene80168:intron |
GCTCTTGTTATAAGAGCATT+GGG | 0.455514 | 3.4:-92352067 | MS.gene80168:CDS |
CTGACTATGGAGTGGTTAGA+TGG | 0.455767 | 3.4:-92354030 | MS.gene80168:CDS |
ATTACTTGCGGGGATGGAAA+TGG | 0.456494 | 3.4:+92359084 | None:intergenic |
AGTGGACAACAATGCTTCTT+CGG | 0.457905 | 3.4:-92350543 | MS.gene80168:CDS |
TGATTGATTGTGCATTAAAT+GGG | 0.459548 | 3.4:-92351222 | MS.gene80168:CDS |
TTATGGTGCAGATATTCAAC+TGG | 0.462990 | 3.4:-92358644 | MS.gene80168:intron |
TCTTTGGGATTTATTCCTGA+AGG | 0.465436 | 3.4:-92353028 | MS.gene80168:CDS |
AAAGTTTCAATGCTATATAC+CGG | 0.467023 | 3.4:-92358517 | MS.gene80168:CDS |
CATTCGTGAGGTGGTGAAGT+TGG | 0.471424 | 3.4:-92350575 | MS.gene80168:CDS |
TGAAGTTGGCGCCAGGGGAG+TGG | 0.472963 | 3.4:-92350561 | MS.gene80168:CDS |
GAGGTGGTGAAGTTGGCGCC+AGG | 0.478413 | 3.4:-92350568 | MS.gene80168:CDS |
CGTGAAACTCTAATACGCTT+GGG | 0.479943 | 3.4:-92356477 | MS.gene80168:CDS |
TTCCATGCTGATCCTCATCC+GGG | 0.481310 | 3.4:-92353665 | MS.gene80168:CDS |
TATACTGTTGGTAATATGTC+AGG | 0.481567 | 3.4:+92355403 | None:intergenic |
TAGAAGATTACTTGCGGGGA+TGG | 0.482737 | 3.4:+92359078 | None:intergenic |
CTGATTATGCAAGGAGGAGG+AGG | 0.483661 | 3.4:-92358589 | MS.gene80168:CDS |
GTGGAATCGGTTAGAGCGCC+TGG | 0.485520 | 3.4:-92351891 | MS.gene80168:intron |
ATGGATCGATAAGGTGGAAT+CGG | 0.486052 | 3.4:-92351904 | MS.gene80168:CDS |
GTAAAGCTTCTTTAAACAGA+AGG | 0.487728 | 3.4:-92353978 | MS.gene80168:CDS |
TGCAGCAGCATCATTAGGAC+AGG | 0.489237 | 3.4:-92355120 | MS.gene80168:CDS |
ATAAGTCTTCCAATAACAAA+AGG | 0.490053 | 3.4:+92351983 | None:intergenic |
TCGTGAAACTCTAATACGCT+TGG | 0.494159 | 3.4:-92356478 | MS.gene80168:CDS |
AAGGAGGAGGAGGGAATCAC+TGG | 0.494567 | 3.4:-92358579 | MS.gene80168:CDS |
CATACATGATATCATATAGT+TGG | 0.498022 | 3.4:+92352119 | None:intergenic |
CCAATTTAAACGGTTTGCGA+AGG | 0.498384 | 3.4:-92354842 | MS.gene80168:CDS |
CTTATAACAAGAGCATAGTC+TGG | 0.499339 | 3.4:+92352076 | None:intergenic |
ATTATTCATACTATCAGAGA+AGG | 0.506198 | 3.4:-92351314 | MS.gene80168:CDS |
TCAAATGATTTCCAAACAGA+AGG | 0.508253 | 3.4:+92351373 | None:intergenic |
AGCATTGTTGTCCACTCCCC+TGG | 0.508780 | 3.4:+92350550 | None:intergenic |
CCGTTGACTCCTATCAGAAA+AGG | 0.508783 | 3.4:+92352967 | None:intergenic |
TTTAGGAAAATGTATGCCAC+TGG | 0.510552 | 3.4:-92358820 | MS.gene80168:CDS |
AAACTTGCCTTAATGTAGAA+AGG | 0.510831 | 3.4:+92356453 | None:intergenic |
GAACATTTCAGGAGCGTACT+GGG | 0.511774 | 3.4:-92350612 | MS.gene80168:intron |
TTTGGGATTTATTCCTGAAG+GGG | 0.519258 | 3.4:-92353026 | MS.gene80168:CDS |
TTTGGCTTTGTATAGGGCTG+CGG | 0.520273 | 3.4:-92358483 | MS.gene80168:CDS |
CAGGAATAAATCCCAAAGAA+AGG | 0.520817 | 3.4:+92353032 | None:intergenic |
CTGGAAATCTTGAGACTCAC+TGG | 0.524828 | 3.4:+92352943 | None:intergenic |
TTGATGCAACAGCCAGGAAG+GGG | 0.526224 | 3.4:+92358770 | None:intergenic |
TAATCGCGACTCTCTGAGCT+TGG | 0.534400 | 3.4:-92353065 | MS.gene80168:CDS |
GCAACAAGGTTTCCCGGATG+AGG | 0.535243 | 3.4:+92353653 | None:intergenic |
AGGGATTATACTGCTCTTTG+AGG | 0.537260 | 3.4:-92353709 | MS.gene80168:CDS |
ATTCTTCTCATATCAGGACT+AGG | 0.539845 | 3.4:+92351953 | None:intergenic |
GGTGGTGAAGTTGGCGCCAG+GGG | 0.542731 | 3.4:-92350566 | MS.gene80168:CDS |
TATGGAACAGCAAAGCATCA+AGG | 0.549400 | 3.4:+92354875 | None:intergenic |
TAAAGCTTCTTTAAACAGAA+GGG | 0.550455 | 3.4:-92353977 | MS.gene80168:CDS |
CACATTAATACAGCTCGGAC+AGG | 0.550830 | 3.4:-92355440 | MS.gene80168:intron |
CTTCTACTATATCCCGAAGA+AGG | 0.551311 | 3.4:+92351272 | None:intergenic |
GACAACAATGCTTCTTCGGA+TGG | 0.552834 | 3.4:-92350539 | MS.gene80168:CDS |
AGCTCTTGACAATATACTGT+TGG | 0.553547 | 3.4:+92355391 | None:intergenic |
GCTGTAAAAGTTCAGAGGCC+AGG | 0.555137 | 3.4:-92354916 | MS.gene80168:CDS |
TTCGTAATAATGGATCGATA+AGG | 0.555778 | 3.4:-92351913 | MS.gene80168:CDS |
TTTGCTGTTCCATATGATTG+GGG | 0.556819 | 3.4:-92354866 | MS.gene80168:CDS |
CCTCAAAGCGCAATATCCTC+TGG | 0.559874 | 3.4:+92351188 | None:intergenic |
TTGAGGCAAATGCTCGAGGA+TGG | 0.561214 | 3.4:-92353692 | MS.gene80168:CDS |
AGGTGGTGAAGTTGGCGCCA+GGG | 0.561779 | 3.4:-92350567 | MS.gene80168:CDS |
CTCCTTGCATAATCAGGAGA+CGG | 0.566045 | 3.4:+92358596 | None:intergenic |
CTCTTTGAGGCAAATGCTCG+AGG | 0.566356 | 3.4:-92353696 | MS.gene80168:CDS |
GAATAATAAAAGATCTTCTG+TGG | 0.567329 | 3.4:+92351330 | None:intergenic |
AAGAGCATAGTCTGGTGGGA+GGG | 0.569585 | 3.4:+92352084 | None:intergenic |
AAATCGATTATGTCCTAGAA+GGG | 0.569775 | 3.4:-92354544 | MS.gene80168:CDS |
TGCGGGGATGGAAATGGCGC+CGG | 0.571024 | 3.4:+92359090 | None:intergenic |
CAAATGATTTCCAAACAGAA+GGG | 0.573018 | 3.4:+92351374 | None:intergenic |
GTCAATGAAAGTGACATGCC+TGG | 0.574169 | 3.4:+92354898 | None:intergenic |
ACAGATTGCAGGTAGCCGCT+TGG | 0.574204 | 3.4:-92350450 | MS.gene80168:CDS |
GTAATAATGGATCGATAAGG+TGG | 0.575385 | 3.4:-92351910 | MS.gene80168:CDS |
CAGAAGGGAACTCATTGACC+AGG | 0.577015 | 3.4:-92353962 | MS.gene80168:intron |
ACTGGTTTCACCAACGTGCA+TGG | 0.577158 | 3.4:-92358626 | MS.gene80168:CDS |
ATCCATCATTTGTCGCAACA+AGG | 0.577514 | 3.4:+92353639 | None:intergenic |
ATGGAACAGCAAAGCATCAA+GGG | 0.579318 | 3.4:+92354876 | None:intergenic |
CTCCGTCTCCTGATTATGCA+AGG | 0.580889 | 3.4:-92358598 | MS.gene80168:CDS |
CTCCTGATTATGCAAGGAGG+AGG | 0.582551 | 3.4:-92358592 | MS.gene80168:CDS |
TTTGATGCAACAGCCAGGAA+GGG | 0.583586 | 3.4:+92358769 | None:intergenic |
ACTGGAATATCTGAGGAGGT+TGG | 0.586654 | 3.4:-92358802 | MS.gene80168:CDS |
TAACAAGAGCATAGTCTGGT+GGG | 0.586859 | 3.4:+92352080 | None:intergenic |
GTGACGATAAAGAGCGGCGA+AGG | 0.590470 | 3.4:+92359114 | None:intergenic |
TTATTCATACTATCAGAGAA+GGG | 0.597112 | 3.4:-92351313 | MS.gene80168:CDS |
AGTCCAATACGATAATGCCT+AGG | 0.612005 | 3.4:+92353578 | None:intergenic |
GAGCATTGGGATCACTAGAA+GGG | 0.612395 | 3.4:-92352054 | MS.gene80168:CDS |
TGATTATGCAAGGAGGAGGA+GGG | 0.614228 | 3.4:-92358588 | MS.gene80168:CDS |
TGATGCAACAGCCAGGAAGG+GGG | 0.617472 | 3.4:+92358771 | None:intergenic |
GATGCAACAGCCAGGAAGGG+GGG | 0.624115 | 3.4:+92358772 | None:intergenic |
TAAGTAGAAGATTACTTGCG+GGG | 0.624383 | 3.4:+92359074 | None:intergenic |
CGTTTCACACATCAATGAGG+AGG | 0.624767 | 3.4:-92359141 | None:intergenic |
GTAGAGAGAAGCAAATCGCT+CGG | 0.625793 | 3.4:+92354514 | None:intergenic |
TTGCTGTTCCATATGATTGG+GGG | 0.633281 | 3.4:-92354865 | MS.gene80168:CDS |
ATAACAAGAGCATAGTCTGG+TGG | 0.635486 | 3.4:+92352079 | None:intergenic |
GTATGCCACTGGAATATCTG+AGG | 0.636314 | 3.4:-92358809 | MS.gene80168:CDS |
CAAGAGCATAGTCTGGTGGG+AGG | 0.648205 | 3.4:+92352083 | None:intergenic |
TTCCCGGATGAGGATCAGCA+TGG | 0.651555 | 3.4:+92353663 | None:intergenic |
GCAACATCAGTTGAAAATGG+AGG | 0.657022 | 3.4:+92355215 | None:intergenic |
ATGGGAATCGTCAAGACCAG+AGG | 0.657066 | 3.4:-92351204 | MS.gene80168:CDS |
TTGTAGCTGTAAAAGTTCAG+AGG | 0.658581 | 3.4:-92354921 | MS.gene80168:CDS |
CGGAGTTTCACCATGCACGT+TGG | 0.670314 | 3.4:+92358616 | None:intergenic |
ATGTCTTCAGGCTAACAATG+TGG | 0.676678 | 3.4:-92358448 | MS.gene80168:CDS |
GCCGCTCTTTATCGTCACAC+CGG | 0.677538 | 3.4:-92359109 | MS.gene80168:CDS |
GCCGGTGTGACGATAAAGAG+CGG | 0.687153 | 3.4:+92359108 | None:intergenic |
AACCTCCTCAGATATTCCAG+TGG | 0.700820 | 3.4:+92358804 | None:intergenic |
TATCGACAAATAGAGCCAAG+CGG | 0.721754 | 3.4:+92350435 | None:intergenic |
CGTCTCCTGATTATGCAAGG+AGG | 0.725178 | 3.4:-92358595 | MS.gene80168:CDS |
TGCCACTGGAATATCTGAGG+AGG | 0.727240 | 3.4:-92358806 | MS.gene80168:CDS |
CCACTGTACTGACTATGGAG+TGG | 0.738546 | 3.4:-92354038 | MS.gene80168:CDS |
CCACTCCATAGTCAGTACAG+TGG | 0.754497 | 3.4:+92354038 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 92350411 | 92359149 | 92350411 | ID=MS.gene80168 |
chr3.4 | mRNA | 92350411 | 92359149 | 92350411 | ID=MS.gene80168.t1;Parent=MS.gene80168 |
chr3.4 | exon | 92359089 | 92359149 | 92359089 | ID=MS.gene80168.t1.exon1;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92359089 | 92359149 | 92359089 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92358765 | 92358873 | 92358765 | ID=MS.gene80168.t1.exon2;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92358765 | 92358873 | 92358765 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92358409 | 92358655 | 92358409 | ID=MS.gene80168.t1.exon3;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92358409 | 92358655 | 92358409 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92356461 | 92356502 | 92356461 | ID=MS.gene80168.t1.exon4;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92356461 | 92356502 | 92356461 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92355378 | 92355449 | 92355378 | ID=MS.gene80168.t1.exon5;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92355378 | 92355449 | 92355378 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92355111 | 92355246 | 92355111 | ID=MS.gene80168.t1.exon6;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92355111 | 92355246 | 92355111 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92354807 | 92354964 | 92354807 | ID=MS.gene80168.t1.exon7;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92354807 | 92354964 | 92354807 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92354501 | 92354585 | 92354501 | ID=MS.gene80168.t1.exon8;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92354501 | 92354585 | 92354501 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92353963 | 92354132 | 92353963 | ID=MS.gene80168.t1.exon9;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92353963 | 92354132 | 92353963 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92353568 | 92353729 | 92353568 | ID=MS.gene80168.t1.exon10;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92353568 | 92353729 | 92353568 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92352943 | 92353101 | 92352943 | ID=MS.gene80168.t1.exon11;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92352943 | 92353101 | 92352943 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92351892 | 92352152 | 92351892 | ID=MS.gene80168.t1.exon12;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92351892 | 92352152 | 92351892 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92351189 | 92351461 | 92351189 | ID=MS.gene80168.t1.exon13;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92351189 | 92351461 | 92351189 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
chr3.4 | exon | 92350411 | 92350623 | 92350411 | ID=MS.gene80168.t1.exon14;Parent=MS.gene80168.t1 |
chr3.4 | CDS | 92350411 | 92350623 | 92350411 | ID=cds.MS.gene80168.t1;Parent=MS.gene80168.t1 |
Gene Sequence |
Protein sequence |