Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80249.t1 | XP_013467935.1 | 98.1 | 891 | 17 | 0 | 1 | 891 | 16 | 906 | 0.00E+00 | 1689.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80249.t1 | A0A072VJK4 | 98.1 | 891 | 17 | 0 | 1 | 891 | 16 | 906 | 0.0e+00 | 1689.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene80249 | 0.801911 | 7.20E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene80249 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene80249 | 0.82485 | 6.46E-54 | -1.69E-46 |
| MS.gene050403 | MS.gene80249 | 0.806987 | 6.30E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene80249 | 0.808394 | 3.17E-50 | -1.69E-46 |
| MS.gene050812 | MS.gene80249 | 0.835174 | 1.96E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene80249 | 0.823806 | 1.14E-53 | -1.69E-46 |
| MS.gene054123 | MS.gene80249 | 0.811721 | 6.08E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene80249 | 0.857389 | 1.69E-62 | -1.69E-46 |
| MS.gene055748 | MS.gene80249 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene055750 | MS.gene80249 | 0.80961 | 1.74E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene80249 | 0.803443 | 3.48E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene80249 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene80249 | 0.803113 | 4.07E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene80249 | 0.840004 | 1.13E-57 | -1.69E-46 |
| MS.gene058700 | MS.gene80249 | 0.808937 | 2.42E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 199 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTCCGGGTCGGGCTTTC+TGG | 0.093751 | 1.3:-42803302 | None:intergenic |
| CATTTGCTGTTTGCTCTTAT+TGG | 0.123771 | 1.3:+42800151 | MS.gene80249:CDS |
| GAGAAGGATTTGGCTATATT+TGG | 0.149892 | 1.3:+42799487 | MS.gene80249:CDS |
| ATTGCCTACTATTTAGTAAA+TGG | 0.157021 | 1.3:+42794958 | MS.gene80249:CDS |
| GAATTATAAGCTTGACTTAC+AGG | 0.172414 | 1.3:-42798676 | None:intergenic |
| CTCAAGAGATCCAACCTTTC+TGG | 0.181342 | 1.3:-42806919 | None:intergenic |
| TTTATTACAGGTATCTTATT+GGG | 0.237944 | 1.3:+42799867 | MS.gene80249:intron |
| ATTTATTACAGGTATCTTAT+TGG | 0.238493 | 1.3:+42799866 | MS.gene80249:intron |
| AGAGAATTTCTTGTACATTT+TGG | 0.238907 | 1.3:+42798721 | MS.gene80249:CDS |
| TGGGTCACTGCTTCTGCATT+TGG | 0.242483 | 1.3:-42800126 | None:intergenic |
| TCTGCATTTGGAGGACCTTC+TGG | 0.248549 | 1.3:-42800114 | None:intergenic |
| TTCACTTGCAGCATATAATA+AGG | 0.269650 | 1.3:-42797580 | None:intergenic |
| GAAGGATTTCATTGGGTTCT+TGG | 0.270749 | 1.3:-42804752 | None:intergenic |
| TTTGGATTCTTTATTGCTTT+AGG | 0.283500 | 1.3:+42799505 | MS.gene80249:CDS |
| TTGGAAAATCTCGTGGATTC+TGG | 0.286568 | 1.3:+42803257 | MS.gene80249:CDS |
| ATCCACGTGATGACGATTTA+TGG | 0.292434 | 1.3:-42795283 | None:intergenic |
| CTGACTGATAGGCACTTCTT+TGG | 0.308188 | 1.3:-42804821 | None:intergenic |
| AGGACAAATCATGTTGAATA+AGG | 0.322447 | 1.3:-42795001 | None:intergenic |
| GGTTCCGGGTCGGGCTTTCT+GGG | 0.326767 | 1.3:-42803301 | None:intergenic |
| TTGCCTACTATTTAGTAAAT+GGG | 0.337487 | 1.3:+42794959 | MS.gene80249:CDS |
| TAAGAAAGAAGCTGAATTCC+TGG | 0.342804 | 1.3:+42801982 | MS.gene80249:CDS |
| TCCATGAGCACTGAGATAAC+TGG | 0.352935 | 1.3:+42798622 | MS.gene80249:CDS |
| CTGAAGTGTACGAATGGTTT+TGG | 0.355223 | 1.3:+42798280 | MS.gene80249:CDS |
| CTCAAAGCGAAGGATTTCAT+TGG | 0.379425 | 1.3:-42804760 | None:intergenic |
| GGGTCGGGCTTTCTGGGTAT+AGG | 0.385827 | 1.3:-42803295 | None:intergenic |
| TCAAGCTTATAATTCTATAA+AGG | 0.386303 | 1.3:+42798684 | MS.gene80249:CDS |
| ATACAATTGATATGAACTAA+TGG | 0.391551 | 1.3:-42799921 | None:intergenic |
| AAGTACGCGAACATTTCTTT+TGG | 0.393563 | 1.3:+42799531 | MS.gene80249:CDS |
| TGGTCCACAACCCCTACATT+TGG | 0.398293 | 1.3:-42804732 | None:intergenic |
| TGAGCATCCACATCAGGTTC+CGG | 0.399986 | 1.3:-42803316 | None:intergenic |
| TGTTAGGCACAACAAGTTGA+TGG | 0.400862 | 1.3:+42800333 | MS.gene80249:intron |
| TTTGTGATGCTGGTGATTCC+CGG | 0.407876 | 1.3:-42800069 | None:intergenic |
| TCCACATCAGGTTCCGGGTC+GGG | 0.407937 | 1.3:-42803310 | None:intergenic |
| CTGCCTCGGGTTTGGTCAAA+AGG | 0.408786 | 1.3:+42805704 | MS.gene80249:CDS |
| TGAGATAACTGGTAGTTTGA+TGG | 0.414550 | 1.3:+42798633 | MS.gene80249:CDS |
| GTCACTGCTTCTGCATTTGG+AGG | 0.415112 | 1.3:-42800123 | None:intergenic |
| AACTGAAGCCATGTCAGTTA+AGG | 0.424587 | 1.3:-42805779 | None:intergenic |
| CATGTGTCAAGCTCTAGTTC+TGG | 0.429376 | 1.3:+42801908 | MS.gene80249:CDS |
| TATTGATGTTGGTGCTGCCT+CGG | 0.429403 | 1.3:+42805690 | MS.gene80249:CDS |
| TTCGTACACTTCAGGCTGTT+TGG | 0.429694 | 1.3:-42798271 | None:intergenic |
| CTGGTGATTCCCGGATAAAA+AGG | 0.430228 | 1.3:-42800060 | None:intergenic |
| CACCGGTTGGTGAGGAGGAC+AGG | 0.430373 | 1.3:+42803050 | MS.gene80249:CDS |
| TTTGACAAACTAAAAGAAAC+GGG | 0.431505 | 1.3:+42805390 | MS.gene80249:CDS |
| ATGCCTTCACCCATGCGGTT+TGG | 0.433558 | 1.3:-42795337 | None:intergenic |
| TGTTGGTGCTGCCTCGGGTT+TGG | 0.433951 | 1.3:+42805696 | MS.gene80249:CDS |
| AGCTGATGGAACTTGAGAAA+AGG | 0.434158 | 1.3:+42804796 | MS.gene80249:CDS |
| TTCACACAGGTTACTGCCGT+TGG | 0.436149 | 1.3:+42806723 | MS.gene80249:intron |
| GAGCATCCACATCAGGTTCC+GGG | 0.438761 | 1.3:-42803315 | None:intergenic |
| CTCCAGCATCACCGTTATAA+CGG | 0.441709 | 1.3:-42805317 | None:intergenic |
| AAATCTTCAATTGGATCATC+GGG | 0.443539 | 1.3:-42799571 | None:intergenic |
| ATTGATGTTGGTGCTGCCTC+GGG | 0.446845 | 1.3:+42805691 | MS.gene80249:CDS |
| CAACCTTTCTGGTGCATAAG+TGG | 0.447890 | 1.3:-42806908 | None:intergenic |
| CAAAACCATTCGTACACTTC+AGG | 0.449478 | 1.3:-42798279 | None:intergenic |
| TCCTTTGTTAATAAGTTTGA+AGG | 0.449982 | 1.3:+42798330 | MS.gene80249:CDS |
| TCCAGCATCACCGTTATAAC+GGG | 0.453068 | 1.3:-42805316 | None:intergenic |
| AAGAGCAAACAGCAAATGCT+TGG | 0.455991 | 1.3:-42800146 | None:intergenic |
| GAAATCTTCAATTGGATCAT+CGG | 0.456727 | 1.3:-42799572 | None:intergenic |
| CACTTATGCACCAGAAAGGT+TGG | 0.457686 | 1.3:+42806909 | MS.gene80249:CDS |
| TTCTATCTCTGCTATCATCT+CGG | 0.457753 | 1.3:-42797611 | None:intergenic |
| CAACTTCTTGCTATTGATGT+TGG | 0.459877 | 1.3:+42805679 | MS.gene80249:CDS |
| TGTAGATTCAGATGATGAAA+TGG | 0.461113 | 1.3:+42806984 | MS.gene80249:CDS |
| ATCCAATTGAAGATTTCATC+AGG | 0.465735 | 1.3:+42799578 | MS.gene80249:CDS |
| GCTAAGGCTATCTGCTCCCT+TGG | 0.466582 | 1.3:+42798221 | MS.gene80249:CDS |
| GAAAGCAGCCTGTTCTGACT+TGG | 0.466824 | 1.3:+42801943 | MS.gene80249:CDS |
| TCACACAGGTTACTGCCGTT+GGG | 0.466862 | 1.3:+42806724 | MS.gene80249:intron |
| ACCAGTTATCTCAGTGCTCA+TGG | 0.469402 | 1.3:-42798623 | None:intergenic |
| CCATTTGCTACCTCTGATGA+TGG | 0.469525 | 1.3:+42795104 | MS.gene80249:CDS |
| GTTAATAAGTTTGAAGGGGA+CGG | 0.473421 | 1.3:+42798336 | MS.gene80249:CDS |
| ACAAAGGACGTCACTACAGC+TGG | 0.474919 | 1.3:-42798315 | None:intergenic |
| AACCTGTCCTCCTCACCAAC+CGG | 0.476504 | 1.3:-42803052 | None:intergenic |
| TCAAAGCGAAGGATTTCATT+GGG | 0.478454 | 1.3:-42804759 | None:intergenic |
| AACAGCCTGCACCAAATGTA+GGG | 0.479756 | 1.3:+42804721 | MS.gene80249:CDS |
| TACCTGATGAAATCTTCAAT+TGG | 0.481210 | 1.3:-42799580 | None:intergenic |
| AATCGTCATCACGTGGATCC+TGG | 0.482075 | 1.3:+42795288 | MS.gene80249:CDS |
| CCATCATCAGAGGTAGCAAA+TGG | 0.483136 | 1.3:-42795104 | None:intergenic |
| GCCCGTTATAACGGTGATGC+TGG | 0.483322 | 1.3:+42805315 | MS.gene80249:CDS |
| TTGGTCAAAAGGACCTTGAT+AGG | 0.486944 | 1.3:+42805715 | MS.gene80249:CDS |
| ATTGCTGCAATTGCTAAACT+TGG | 0.487614 | 1.3:+42798568 | MS.gene80249:CDS |
| TCTATCTCTGCTATCATCTC+GGG | 0.488428 | 1.3:-42797610 | None:intergenic |
| TGCACCAAATGTAGGGGTTG+TGG | 0.488543 | 1.3:+42804728 | MS.gene80249:CDS |
| TAAATGGGGCAGTTCAAGAA+AGG | 0.492643 | 1.3:+42794974 | MS.gene80249:CDS |
| TGCAATTGCTAAACTTGGCC+CGG | 0.494454 | 1.3:+42798573 | MS.gene80249:CDS |
| GCTGATGGAACTTGAGAAAA+GGG | 0.494748 | 1.3:+42804797 | MS.gene80249:CDS |
| ATCATCTGAATCTACATCAC+TGG | 0.500007 | 1.3:-42806977 | None:intergenic |
| TAAAGGTGGACAGGAGCAAA+AGG | 0.500329 | 1.3:+42803107 | MS.gene80249:CDS |
| TAGTTTGTGAAGAGCTGGAT+TGG | 0.501881 | 1.3:+42800034 | MS.gene80249:CDS |
| AAGCTTTATATGATGCAGCC+AGG | 0.502582 | 1.3:+42795237 | MS.gene80249:CDS |
| AGTCAATTCATCACCTATCA+AGG | 0.502757 | 1.3:-42805728 | None:intergenic |
| ATGGAGTGCATGGATGAACT+TGG | 0.503782 | 1.3:+42800352 | MS.gene80249:CDS |
| GTTGCAGCAGGCTATTGATA+AGG | 0.504330 | 1.3:+42798825 | MS.gene80249:CDS |
| TGCCCCATTTACTAAATAGT+AGG | 0.504706 | 1.3:-42794962 | None:intergenic |
| AGGAGGACAGGTTTATGAAA+GGG | 0.505159 | 1.3:+42803062 | MS.gene80249:CDS |
| TTAATAAGTTTGAAGGGGAC+GGG | 0.506571 | 1.3:+42798337 | MS.gene80249:CDS |
| TCGAATTGCTGCCTTTCGAA+TGG | 0.509589 | 1.3:+42794900 | MS.gene80249:CDS |
| CATACATGAGCATCCACATC+AGG | 0.511008 | 1.3:-42803322 | None:intergenic |
| TCGAATGGTTCCACAAGTGT+AGG | 0.511585 | 1.3:+42794915 | MS.gene80249:CDS |
| TTCATATCAATTGTATGTTG+AGG | 0.514605 | 1.3:+42799928 | MS.gene80249:CDS |
| CTCCTCACCAACCGGTGTGA+TGG | 0.515931 | 1.3:-42803044 | None:intergenic |
| CGTTGGGCATGCAGCAATGT+TGG | 0.517058 | 1.3:+42806740 | MS.gene80249:CDS |
| TTAGCACTGGCGTCAGCTTG+TGG | 0.517278 | 1.3:-42795146 | None:intergenic |
| GAACAGCCTGCACCAAATGT+AGG | 0.520502 | 1.3:+42804720 | MS.gene80249:CDS |
| TGCATTGGTCCAGTTTGCTA+AGG | 0.521404 | 1.3:+42798205 | MS.gene80249:intron |
| CATCCACTTATGCACCAGAA+AGG | 0.521547 | 1.3:+42806905 | MS.gene80249:CDS |
| CGAATGGTTCCACAAGTGTA+GGG | 0.522305 | 1.3:+42794916 | MS.gene80249:CDS |
| CTATTGATAAGGAGAAAATA+TGG | 0.523593 | 1.3:+42798836 | MS.gene80249:CDS |
| TTATTACAGGTATCTTATTG+GGG | 0.523663 | 1.3:+42799868 | MS.gene80249:intron |
| ATTCGAAAGGCAGCAATTCG+AGG | 0.525886 | 1.3:-42794898 | None:intergenic |
| TTCTCTGATTAAGCTCTCCA+AGG | 0.529124 | 1.3:-42798238 | None:intergenic |
| GGTGAAGGCATTGTCATGTC+AGG | 0.529130 | 1.3:+42795349 | MS.gene80249:CDS |
| ATGTCAATGTATTTGTTCAA+AGG | 0.529604 | 1.3:+42797634 | MS.gene80249:CDS |
| ATGACAATGTAAAGGTGGAC+AGG | 0.530740 | 1.3:+42803098 | MS.gene80249:CDS |
| TTGCTCGGAAAGATGCCTCC+AGG | 0.532885 | 1.3:-42802000 | None:intergenic |
| AACTAATGGATGAGAGTTGT+GGG | 0.533106 | 1.3:-42799907 | None:intergenic |
| ATAGGTAGTTTGTGAAGAGC+TGG | 0.533672 | 1.3:+42800029 | MS.gene80249:intron |
| ATGGCTTCAGTTGTTCCTAT+CGG | 0.533849 | 1.3:+42805790 | MS.gene80249:CDS |
| CAATGCATGTAAGTGCAAGC+AGG | 0.534320 | 1.3:-42798549 | None:intergenic |
| GGTTCAGAAGCAGTTGCAGC+AGG | 0.535038 | 1.3:+42798813 | MS.gene80249:CDS |
| AGACAAATTGGAAAATCTCG+TGG | 0.536140 | 1.3:+42803250 | MS.gene80249:intron |
| TATAATTCTATAAAGGATGT+TGG | 0.536506 | 1.3:+42798691 | MS.gene80249:CDS |
| AGAGCAAACAGCAAATGCTT+GGG | 0.537493 | 1.3:-42800145 | None:intergenic |
| CCTTTGTTAATAAGTTTGAA+GGG | 0.539411 | 1.3:+42798331 | MS.gene80249:CDS |
| AGCATCACAAAACAGTCTCA+TGG | 0.542742 | 1.3:+42800081 | MS.gene80249:CDS |
| GCCCGACCCGGAACCTGATG+TGG | 0.543249 | 1.3:+42803309 | MS.gene80249:CDS |
| CAGAAAGAATGACAATGTAA+AGG | 0.547359 | 1.3:+42803090 | MS.gene80249:CDS |
| ATCCACATCAGGTTCCGGGT+CGG | 0.548048 | 1.3:-42803311 | None:intergenic |
| GCTTCTAAGAAATGAGCTGA+TGG | 0.549207 | 1.3:+42804782 | MS.gene80249:CDS |
| AGACCAAACCGCATGGGTGA+AGG | 0.550828 | 1.3:+42795334 | MS.gene80249:CDS |
| TTGGGGTAGACCAAACCGCA+TGG | 0.552422 | 1.3:+42795327 | MS.gene80249:CDS |
| CAACATTGCTGCATGCCCAA+CGG | 0.554350 | 1.3:-42806739 | None:intergenic |
| GATGATGGTGCCCGTTATAA+CGG | 0.557094 | 1.3:+42805306 | MS.gene80249:CDS |
| AAGCCAAGCTGTTGAAAACC+AGG | 0.562530 | 1.3:-42795306 | None:intergenic |
| TTGTCCTCGAGCAGTGGTCA+AGG | 0.562849 | 1.3:+42795017 | MS.gene80249:CDS |
| TTCTTAGAAGCTCAAAGCGA+AGG | 0.563042 | 1.3:-42804770 | None:intergenic |
| GAGGAGGACAGGTTTATGAA+AGG | 0.563646 | 1.3:+42803061 | MS.gene80249:CDS |
| CTTTCTGGTGCATAAGTGGA+TGG | 0.565207 | 1.3:-42806904 | None:intergenic |
| TCAGAGATATGTACCATCCC+TGG | 0.565736 | 1.3:+42806770 | MS.gene80249:CDS |
| CGTTGAGTGGGGTTCAGAAG+AGG | 0.568636 | 1.3:+42798771 | MS.gene80249:CDS |
| ATGCCAAGAAAATAGTTGAC+GGG | 0.570230 | 1.3:+42801559 | MS.gene80249:CDS |
| ACAACCCCTACATTTGGTGC+AGG | 0.572458 | 1.3:-42804726 | None:intergenic |
| CATCACACCGGTTGGTGAGG+AGG | 0.575965 | 1.3:+42803045 | MS.gene80249:CDS |
| TGGTAGTTTGATGGACATGC+TGG | 0.577164 | 1.3:+42798642 | MS.gene80249:CDS |
| AACCATCACACCGGTTGGTG+AGG | 0.578656 | 1.3:+42803042 | MS.gene80249:CDS |
| CCCTTCAAACTTATTAACAA+AGG | 0.580260 | 1.3:-42798331 | None:intergenic |
| CATAATGTTTATACCAGGGA+TGG | 0.584245 | 1.3:-42806783 | None:intergenic |
| AAAAGCTGATTCTCTGCAAG+AGG | 0.585912 | 1.3:+42802021 | MS.gene80249:CDS |
| GCATCACAAAACAGTCTCAT+GGG | 0.587479 | 1.3:+42800082 | MS.gene80249:CDS |
| ATGATGGTATGACTGTCAAC+GGG | 0.587846 | 1.3:+42795120 | MS.gene80249:CDS |
| GGATGGTACATATCTCTGAA+TGG | 0.588023 | 1.3:-42806766 | None:intergenic |
| CAACAAGTTGATGGAGTGCA+TGG | 0.588754 | 1.3:+42800342 | MS.gene80249:CDS |
| TCAATGTATTTGTTCAAAGG+AGG | 0.593230 | 1.3:+42797637 | MS.gene80249:CDS |
| TCTCTGATTAAGCTCTCCAA+GGG | 0.594955 | 1.3:-42798237 | None:intergenic |
| TGGGGTAGACCAAACCGCAT+GGG | 0.599216 | 1.3:+42795328 | MS.gene80249:CDS |
| AAAGAATGACAATGTAAAGG+TGG | 0.599299 | 1.3:+42803093 | MS.gene80249:CDS |
| AATAAACAGGATGTCTTGCA+AGG | 0.599328 | 1.3:+42805652 | MS.gene80249:intron |
| GATGCCAAGAAAATAGTTGA+CGG | 0.600651 | 1.3:+42801558 | MS.gene80249:CDS |
| AGTTTGATGGACATGCTGGT+TGG | 0.601484 | 1.3:+42798646 | MS.gene80249:CDS |
| CAGCTGAATTTCTGTCCAGA+GGG | 0.602473 | 1.3:+42800229 | MS.gene80249:CDS |
| AAAGAAAACATACAAAGCAA+TGG | 0.602552 | 1.3:-42798373 | None:intergenic |
| AGCTTTATATGATGCAGCCA+GGG | 0.604106 | 1.3:+42795238 | MS.gene80249:CDS |
| TCAGTCAACGATAAAAGACT+CGG | 0.604277 | 1.3:+42801596 | MS.gene80249:CDS |
| TGCCTACTATTTAGTAAATG+GGG | 0.604581 | 1.3:+42794960 | MS.gene80249:CDS |
| CTTTGTTAATAAGTTTGAAG+GGG | 0.606418 | 1.3:+42798332 | MS.gene80249:CDS |
| GCTTTATTAAATACAGCACA+TGG | 0.606466 | 1.3:+42800181 | MS.gene80249:CDS |
| TAAAAGAACCTTAACTGACA+TGG | 0.607581 | 1.3:+42805771 | MS.gene80249:CDS |
| GAACTAATGGATGAGAGTTG+TGG | 0.607614 | 1.3:-42799908 | None:intergenic |
| GTCAAGCTCTAGTTCTGGAA+AGG | 0.610770 | 1.3:+42801913 | MS.gene80249:CDS |
| CAGAAAGGTTGGATCTCTTG+AGG | 0.611545 | 1.3:+42806920 | MS.gene80249:CDS |
| AAATGGGGCAGTTCAAGAAA+GGG | 0.611700 | 1.3:+42794975 | MS.gene80249:CDS |
| AGAAGCATTAAAATGCCGAT+AGG | 0.614251 | 1.3:-42805805 | None:intergenic |
| GCTCTAAAAGCTGCAGCTCG+AGG | 0.619043 | 1.3:-42798745 | None:intergenic |
| AACAGCCTGAAGTGTACGAA+TGG | 0.620134 | 1.3:+42798274 | MS.gene80249:CDS |
| TCGGGCTTTCTGGGTATAGG+AGG | 0.620870 | 1.3:-42803292 | None:intergenic |
| CATGATTTGTCCTCGAGCAG+TGG | 0.621789 | 1.3:+42795011 | MS.gene80249:CDS |
| GATCAAACCATCACACCGGT+TGG | 0.625270 | 1.3:+42803037 | MS.gene80249:CDS |
| CAGTCAACGATAAAAGACTC+GGG | 0.627580 | 1.3:+42801597 | MS.gene80249:CDS |
| GACAACATCTGAAAGCATTG+AGG | 0.629336 | 1.3:+42798867 | MS.gene80249:CDS |
| TATACCCAGAAAGCCCGACC+CGG | 0.629720 | 1.3:+42803297 | MS.gene80249:CDS |
| GATTTGATGATCAGTGATGA+TGG | 0.631118 | 1.3:+42805291 | MS.gene80249:CDS |
| GACCATAAATCGTCATCACG+TGG | 0.631638 | 1.3:+42795281 | MS.gene80249:CDS |
| GACAGTCATACCATCATCAG+AGG | 0.633736 | 1.3:-42795114 | None:intergenic |
| AGGACCTTGACCACTGCTCG+AGG | 0.635154 | 1.3:-42795021 | None:intergenic |
| TTTAGAGCAAACGTTGAGTG+GGG | 0.635179 | 1.3:+42798760 | MS.gene80249:CDS |
| TGATGCTGGAGGTGTTCAGA+TGG | 0.637713 | 1.3:+42805329 | MS.gene80249:CDS |
| TTAATGCAGAGATAAGACAT+TGG | 0.637829 | 1.3:+42801530 | MS.gene80249:intron |
| CTATCAGTCAGAAAATAATG+AGG | 0.638672 | 1.3:+42804833 | MS.gene80249:CDS |
| AGGTGATGAATTGACTGAGA+AGG | 0.640923 | 1.3:+42805735 | MS.gene80249:CDS |
| GCAGCTGAATTTCTGTCCAG+AGG | 0.641446 | 1.3:+42800228 | MS.gene80249:CDS |
| CACTTGTGGAACCATTCGAA+AGG | 0.643702 | 1.3:-42794911 | None:intergenic |
| GATGATGGTATGACTGTCAA+CGG | 0.647798 | 1.3:+42795119 | MS.gene80249:CDS |
| AGCATATAATAAGGAGTACA+CGG | 0.648767 | 1.3:-42797571 | None:intergenic |
| CGTTATAACGGTGATGCTGG+AGG | 0.661558 | 1.3:+42805318 | MS.gene80249:CDS |
| TGGAGTGCATGGATGAACTT+GGG | 0.666848 | 1.3:+42800353 | MS.gene80249:CDS |
| TATTACAGGTATCTTATTGG+GGG | 0.669200 | 1.3:+42799869 | MS.gene80249:intron |
| CATGGGCATAGTAAACCAGA+AGG | 0.671641 | 1.3:+42800099 | MS.gene80249:CDS |
| TGACAATGCCTTCACCCATG+CGG | 0.692935 | 1.3:-42795342 | None:intergenic |
| CAAACTAAAAGAAACGGGAA+CGG | 0.697326 | 1.3:+42805395 | MS.gene80249:CDS |
| ACAGCCTGCACCAAATGTAG+GGG | 0.706149 | 1.3:+42804722 | MS.gene80249:CDS |
| TAGTGATCAAACCATCACAC+CGG | 0.716684 | 1.3:+42803033 | MS.gene80249:CDS |
| GAAAGAAGCTGAATTCCTGG+AGG | 0.720772 | 1.3:+42801985 | MS.gene80249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 42794896 | 42807020 | 42794896 | ID=MS.gene80249 |
| chr1.3 | mRNA | 42794896 | 42807020 | 42794896 | ID=MS.gene80249.t1;Parent=MS.gene80249 |
| chr1.3 | exon | 42794896 | 42795370 | 42794896 | ID=MS.gene80249.t1.exon1;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42794896 | 42795370 | 42794896 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42797567 | 42797658 | 42797567 | ID=MS.gene80249.t1.exon2;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42797567 | 42797658 | 42797567 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42798218 | 42798382 | 42798218 | ID=MS.gene80249.t1.exon3;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42798218 | 42798382 | 42798218 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42798501 | 42798888 | 42798501 | ID=MS.gene80249.t1.exon4;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42798501 | 42798888 | 42798501 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42799481 | 42799599 | 42799481 | ID=MS.gene80249.t1.exon5;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42799481 | 42799599 | 42799481 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42799877 | 42799949 | 42799877 | ID=MS.gene80249.t1.exon6;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42799877 | 42799949 | 42799877 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42800033 | 42800250 | 42800033 | ID=MS.gene80249.t1.exon7;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42800033 | 42800250 | 42800033 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42800339 | 42800383 | 42800339 | ID=MS.gene80249.t1.exon8;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42800339 | 42800383 | 42800339 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42801539 | 42801632 | 42801539 | ID=MS.gene80249.t1.exon9;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42801539 | 42801632 | 42801539 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42801851 | 42802042 | 42801851 | ID=MS.gene80249.t1.exon10;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42801851 | 42802042 | 42801851 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42803025 | 42803128 | 42803025 | ID=MS.gene80249.t1.exon11;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42803025 | 42803128 | 42803025 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42803252 | 42803339 | 42803252 | ID=MS.gene80249.t1.exon12;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42803252 | 42803339 | 42803252 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42804708 | 42804854 | 42804708 | ID=MS.gene80249.t1.exon13;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42804708 | 42804854 | 42804708 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42805291 | 42805416 | 42805291 | ID=MS.gene80249.t1.exon14;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42805291 | 42805416 | 42805291 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42805661 | 42805831 | 42805661 | ID=MS.gene80249.t1.exon15;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42805661 | 42805831 | 42805661 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42806732 | 42806791 | 42806732 | ID=MS.gene80249.t1.exon16;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42806732 | 42806791 | 42806732 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| chr1.3 | exon | 42806901 | 42807020 | 42806901 | ID=MS.gene80249.t1.exon17;Parent=MS.gene80249.t1 |
| chr1.3 | CDS | 42806901 | 42807020 | 42806901 | ID=cds.MS.gene80249.t1;Parent=MS.gene80249.t1 |
| Gene Sequence |
| Protein sequence |
