AlfalfaGEDB | MS.gene055748

M. sativa cultivar XinJiangDaYe / MS.gene055748

KEGG: K03217
GO: GO:0003674 GO:0005575 GO:0016021 GO:0031224 GO:0032977 GO:0110165 GO:0140104
PFAM: PF02096.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055748.t1	XP_013456099.1	97.3	412	8	2	1	412	1	409	1.00E-220	775.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055748.t1	Q9FY06	91.0	376	29	2	1	376	1	371	1.0e-192	674.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055748.t1	A0A072UW90	97.3	412	8	2	1	412	1	409	7.3e-221	775.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene055748	0.802845	4.62E-49	-1.69E-46
MS.gene049171	MS.gene055748	0.918581	1.31E-86	-1.69E-46
MS.gene049173	MS.gene055748	0.839368	1.65E-57	-1.69E-46
MS.gene049217	MS.gene055748	0.84436	7.93E-59	-1.69E-46
MS.gene049222	MS.gene055748	0.918634	1.22E-86	-1.69E-46
MS.gene049232	MS.gene055748	0.847583	1.05E-59	-1.69E-46
MS.gene049285	MS.gene055748	0.916826	1.12E-85	-1.69E-46
MS.gene049320	MS.gene055748	0.909158	7.76E-82	-1.69E-46
MS.gene04939	MS.gene055748	0.839147	1.89E-57	-1.69E-46
MS.gene049609	MS.gene055748	0.842568	2.39E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055748.t1	MTR_4g063705	97.330	412	8	2	1	412	1	409	0.0	814
MS.gene055748.t1	MTR_3g086250	51.914	418	162	4	1	383	1	414	6.70e-139	407
MS.gene055748.t1	MTR_4g089105	26.316	285	161	11	74	342	91	342	4.72e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055748.t1	AT2G28800	78.342	374	74	3	24	393	40	410	0.0	603
MS.gene055748.t1	AT2G28800	70.588	374	73	4	24	393	40	380	0.0	527
MS.gene055748.t1	AT2G28800	80.719	306	52	3	24	325	40	342	1.92e-180	506
MS.gene055748.t1	AT2G28800	80.984	305	51	3	24	324	40	341	2.28e-180	506
MS.gene055748.t1	AT1G24490	57.632	380	129	3	60	412	61	435	2.79e-146	425
MS.gene055748.t1	AT1G24490	49.604	379	122	4	61	412	62	398	1.69e-114	343

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Find 117 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTCAACCTAAAATTA+AGG	0.326230	4.4:+42350552	MS.gene055748:CDS
AAAGGATAGCTTACCACAAA+TGG	0.446577	4.4:-42351209	None:intergenic
AAAGTGGATCCGGAATTTCT+TGG	0.421708	4.4:+42351180	MS.gene055748:CDS
AACACCCCTCACCTGATTGC+CGG	0.380738	4.4:-42350593	None:intergenic
AACATCAATAGAATGAGTTA+AGG	0.469067	4.4:-42349280	None:intergenic
AACATCCGTGGAAGTGGAAG+TGG	0.509079	4.4:-42349379	None:intergenic
AAGAACAAACTCCATGGCAT+CGG	0.591393	4.4:-42349439	None:intergenic
AAGGCTATATACCCAAGCTG+GGG	0.714930	4.4:+42350752	MS.gene055748:CDS
AAGTTGTTGCGGTGAAGTGA+AGG	0.492325	4.4:-42349189	None:intergenic
AAGTTTCTTCCACTCATGAT+CGG	0.524406	4.4:+42353486	MS.gene055748:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGAGGTTATCATAATTTCA+TGG	-	chr4.4:42350370-42350389	None:intergenic	30.0%
ACTCATTCTATTGATGTTAC+CGG	+	chr4.4:42349285-42349304	MS.gene055748:CDS	30.0%
ACTTAGATACTTCTTTCTGA+AGG	+	chr4.4:42353825-42353844	MS.gene055748:intron	30.0%
AGTAAATGTAACTAGGAAGT+AGG	+	chr4.4:42352928-42352947	MS.gene055748:intron	30.0%
ATACTTGTGTTTCACACATA+AGG	-	chr4.4:42353784-42353803	None:intergenic	30.0%
ATAGCAAATCCATACGAATA+AGG	-	chr4.4:42350248-42350267	None:intergenic	30.0%
ATCCTGAAATTATATGTTGC+AGG	+	chr4.4:42349880-42349899	MS.gene055748:intron	30.0%
ATTGCTCACTCTTATTGTTA+AGG	+	chr4.4:42350271-42350290	MS.gene055748:CDS	30.0%
ATTTATCAAGATGTAGTAGG+CGG	+	chr4.4:42353162-42353181	MS.gene055748:intron	30.0%
ATTTCAGTAAATACGAGACA+TGG	+	chr4.4:42351544-42351563	MS.gene055748:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	42349141	42354354	42349141	ID=MS.gene055748
chr4.4	mRNA	42349141	42354354	42349141	ID=MS.gene055748.t1;Parent=MS.gene055748
chr4.4	exon	42349141	42349464	42349141	ID=MS.gene055748.t1.exon1;Parent=MS.gene055748.t1
chr4.4	CDS	42349141	42349464	42349141	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42350212	42350322	42350212	ID=MS.gene055748.t1.exon2;Parent=MS.gene055748.t1
chr4.4	CDS	42350212	42350322	42350212	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42350529	42350603	42350529	ID=MS.gene055748.t1.exon3;Parent=MS.gene055748.t1
chr4.4	CDS	42350529	42350603	42350529	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42350729	42350789	42350729	ID=MS.gene055748.t1.exon4;Parent=MS.gene055748.t1
chr4.4	CDS	42350729	42350789	42350729	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42350942	42351015	42350942	ID=MS.gene055748.t1.exon5;Parent=MS.gene055748.t1
chr4.4	CDS	42350942	42351015	42350942	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42351113	42351217	42351113	ID=MS.gene055748.t1.exon6;Parent=MS.gene055748.t1
chr4.4	CDS	42351113	42351217	42351113	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42353264	42353371	42353264	ID=MS.gene055748.t1.exon7;Parent=MS.gene055748.t1
chr4.4	CDS	42353264	42353371	42353264	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42353447	42353550	42353447	ID=MS.gene055748.t1.exon8;Parent=MS.gene055748.t1
chr4.4	CDS	42353447	42353550	42353447	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42354004	42354153	42354004	ID=MS.gene055748.t1.exon9;Parent=MS.gene055748.t1
chr4.4	CDS	42354004	42354153	42354004	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1
chr4.4	exon	42354231	42354354	42354231	ID=MS.gene055748.t1.exon10;Parent=MS.gene055748.t1
chr4.4	CDS	42354231	42354354	42354231	ID=cds.MS.gene055748.t1;Parent=MS.gene055748.t1

Gene Sequence

>MS.gene055748

ATGGCGAAGACACTGATTTCATCTCCATCGTTCCTCGGAACTCCACTTCCTTCACTTCACCGCAACAACTTCTCCCCTAACCGTACCAGACTATATACCAAAGTTCACTTCAGTTTCCACCAAATTCCACCAATTCAATCCTTAACTCATTCTATTGATGTTACCGGTGTCTTCGCCAGAGCTGAAGGACTTCTTTATACGCTCGCCGATGCCGCCGTTACGGCCGATGCAGTCACTTCCACTTCCACTTCCACGGATGTTGCTGTGCAGAAGAACGGAGGTTGGTTTGGTTTTATCTCCGATGCCATGGAGTTTGTTCTTAAGGTAATCTTCACAACTTGTGCTTTTTAATTTTATCAACTATCTTTCTTAATATTCGTAATTTAACTAATTTTTGCTTATAATTCATTCCAAAGAAAGTATATGAAATAAAATCAAACCGAACTTATGAAAATAAACTGAAAACAGTTTGGGAGATGTCATAATTTGTTTTTATGTGATCTTTGGAACAGTCTCATAAGTGATTATGTTAATAAATAAGCTAAAATAAGTCAATCCAAACATGACCTTACTATATAAGGATTTTGTTGCCTTGAGATTCATGAAATTTGTATTATTGAGGTTGTTTAGACTTTAGATTGCTTATATCTTAAGATACTCTCCGTCGTTGAGTTTTTTCTTAGAAGATTGAACCGTTGGTTTTGAACGTACTTTAAATGAGAACGATGTTAAGGTTCTTATCCTGAAATTATATGTTGCAGGGAAAGTGTTCAGTGTTACTGACTTACTGTTTACTTCTGTTAATTTAATTAAACAAGTTAAACTTGTGTTTTTTTTTTTTTTTTTGTTATATGGAAATGTATACATATAAATGGAAAGAGTAATGCTATTTGTTTCGAAAGGTTTTCCACCAGTTTCAATGTACTTGGCCCTTACCCTTTTGCTTTAGAGTTATCATGTAAAATAGCCATAAAAAGGAAAACAAAACTACCTACAAATGTTCCACGTTCCTGTAATAAAATTGGAGGATTGCATTTTTTAACAGGAAATGTTTTGCTTGTTGTTACTCAGATATTAAAGGATGGTTTGTCTGCCGTGCATGTGCCTTATTCGTATGGATTTGCTATCATATTGCTCACTCTTATTGTTAAGGCCGCTACACTTCCTTTGACAAAGCAACAGGTTAGTACAAATTACAGCAATTTCTATAGGCAAATTTACTGAAACCATGAAATTATGATAACCTCGTTTGAAACATTAAAAACAAACCATAAATGGATTGCCAGTCCAAAAAAAAAACCATAAATGGATTTTTCTTTCAGTTATATGAAATTTAACACATACTATATATCACTAAATGAAGTTCTGACTTTATTTAATACATGTAGGTTGAATCAACACTAGCTATGCAAAACCTTCAACCTAAAATTAAGGCCATTCAAGAAAGATATGCCGGCAATCAGGTGAGGGGTGTTGCTGTTTGTTACTTGTTAAGCTTCCAATTTATTCTTAAGTAAATATTGATTTTGTACCTTAAAATGATAGCATGGTTGTTTCTAACTACTTATTTCATTGCCCTCATTTCAAGGAAAGAATACAACTTGAGACTTCAAGGCTATATACCCAAGCTGGGGTTAACCCTTTGGCAGGTACAGTTATATCTTACTATTGCCTTTATCATTTTCATCTCAACTCTGATTCTGTATAATAATGCTTTGACATGTGATAATATGATGTCAAAACATTTGCAATATCATAACTGGGCTGTACTTAAAGAAGGCAATTTTATCATTTTGTATAGGTTGTTTACCGACTTTGGCTACTATTCCCGTCTGGATTGGTCTATACCAAGCTTTATCTAATGTGGCAAATGAGGTAATTAATGGTATATAAACTATTATAATTTGAGATTTTGATAGACGAATTACAAATACATGATTTTTGCTAATTATTGAAAACTTTTAATTTGAAGGGACTGTTAACAGAAGGTTTCTTATGGATCCCTTCTCTCGGTGGTCCCACTAGCATTGCTGCTAGACAAAGTGGATCCGGAATTTCTTGGCTTTTTCCATTTGTGGTAAGCTATCCTTTGCTCATAAGCGAAGTATTTTTTTCGCATTTGGCTATTTCTTTTTCCTAGTACTTGTGAGTCTGTGACACTATGATTTTCAGACATCAGACTATTTACTCTTGGCAATCATTTTCTTTGGAGCTTATTCCAGTCATGGTTCTTGAAACAATTTTTTTTTTTTTTAAATTGTATGTCATACAGTACAGTTGCTGATAAAAATTCTTTTCATAGTTAGTAATGTAGCAATTTGCGTAGGCTCTGCTTGCAAAAATATATGCAAAGGTTCCTTTTTATAAGTTATGCATATGCCCTATTGTCCCAGTTAGTCTTAGATTTCAGTAAATACGAGACATGGTTTATGCAGCATGGGTGCAAGTTGGATTAAATAGTAGTATATAACATGCAGCACATTTAGTGATGCAGATTCTTTTAGTAGTTAGGACTTTAGCATTTTGGGGGTGGGGGTATGGTCTGTTCACCACAGAATGTGCCAATAGGGACTAAATGAGCATTTAGGTCAACTGCTTAATTAAACATTAATTCACAAGCACTTGTCGTATTAAAGCTTATATACAAATTGTTTCTACCAAGGGAGAGCCTTGGCGCAATGGTAAAGTTGTTGTCACGTGACTGAAAGGCTCTGAAGCATGGGTACTCCGTTTTGCTAAACGTACCCGTACCGGGTACTGCGCGGGTACTGGTACACGTACGGTACGCGTACTGTACGCACCCATGAAGCACCAGGTTTTTTTTTTTTTTTTTTAATGGTTGGGTACGGACGGGGTACTGCAGTGGTACTGATTGGGTACGTTTATCCTCTTTTTTTGGAGAAAATGGAGCAATTATAGTTTTTTTTTGTTTTTTTTATAAAAGTCAAACTTAACTCCACGCACATCCTCTTTTTTTTTGAGAAAAACAAGCCCTTTTATGAGAATTAATAGCATTGAAGCTAGTCATTTTACTGAAGATGAGGAAGGAAATAGTGATATCGACACAGTTGGAGTGTGATTTTTCCTATTCATGCATAGTTATTAAGTTTTATCCCGTACTTTAGTTTTTCAATTTGGATGTTTTAGCGTTGTAATTTTTTTTTTGGTTGAATTTTTGTCGTCATTTGAGCAATATAATTTTCTCATGCAATGTTATTTATTTTAAATTTAAAAAAAAAAAATTTATCGTAACGTACCCGTACCTTTGTTTTTTGAGAAATGCCGTATCCCGTACCCGTACCCGCACCCGTGGTCACAGGTTCAAGATCTAGAAACAGCCTCTTGTGTAAAACACAGGGGAAGACTGCGTAGGGTACACCAAAATGGTGGGACCCATTCCTGGACCTGCATATGTGGGAGCTTTAGTGCACCGAGCTGCCCTTTTTTTTTTACAAATTGTTTCTACCATCAAAGAGGAAATGAGAGTTAATTGCACTACAGTTCTTTTGAGTTGTTTCATTACAAAATGAAGTTCTCTTATAGCCTATCCATAAAAGCTTATGAAAATAAGTTGAATACAAATGAACATATCATTAAGTATTTAAGTAAGTTTTTCCAAGCACTTGCTCAAATGTTTATATCATAAGATAAGCCTAAATACACTCTTATAAACACCCCTAGTAAATCATTTTGCTTGTTACAATGGTCATTACCACATCAATTAGTTTCTTTATAGTTTTACGGAGCTCGGTGTTTATTGGTTGTGTTGTGGTAGGTTGAGTCTTGTAGTAAATGTAACTAGGAAGTAGGAACTGGGAAAACAACATTATGTTTTGATGACTTTAGTATTTCTTCTCTTTGGTTGACCCTCTTTTCTCACTTTCTTTTTACAGGGAAAAGTTTTCTTCTACATTTTTTTGGTTGTGGTTTATGAGATTTCATTTTTTATTTATTTATTTATTTATATCAGTATGGATATTAGCATTTAATGTTCTAGATGAAATGCTCACCTACTGCAATCATTTATCAAGATGTAGTAGGCGGTACACTTTGTTAGTTGATTCTATGTTTTTTCTTCCGCTATACAATATAACATAACAAACGTCTGTTAATTGTTGTGCAGGATGGCCATCCACCTTTGGGTTGGCATGACACTGCAGCATATCTTGTTTTACCTGTTCTTCTTATTCTTTCTCAATATGTTTCAATGGAAATCATGAAACCACCTCAGGTAAGCATGTCAGGTATCCTTCTCTTTCCTTATTATTTTACAAAGCAGACCTAACTTACTTTTTTTTTTTTACAGACAAATGATCCTACTCAAAAGAATACACTTCTTATTTTCAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTGCCATCAGGACTAACAATTTACTGGTTAGTATTTCACAAACTATATCAATGGACTCCTCTCTACCTATTAAGTTCCTATATTTTAATTTTCAAATTTTTGCCATAACTCCATACATTCTTTATATGTTTTATTATGGGTTACTATTATACTTATCTTATATTCTATAAATAAATCAAATTTGGTCAGCAAATCAACTTACCGTATCCATATAATACACCTTTTTCTTTCAGAAACCATTTCCTTGATATGACTGCCTTATGTGTGAAACACAAGTATACAGAGACCATATGCACGAGAACTTAGATACTTCTTTCTGAAGGAATATCATGTTCATCAAGTCAATAATTTTTCAATAATACACACACACACACACACACACACACTACTAGATGTGGGAGATAGCTGTGAAGACATTGCTTGTGTGCTGAGAAAAATAAACAATTTAGTTGCTGATAGATTTTTTTTCCTTTTGCTAGGTTTACGAATAATGTCCTGAGCACAGCTCAACAAATATGGTTGCGCAAATTAGGAGGTGCAAAGCCTGCTGTTAATGAAGATGCTGGCGGAATTATTACGGCAGGACGAGCTAAGAGATCATTTTCTAAGCCCGAAAAGGATGGTGAAAGGTCAGTATTTTACGATACAGGTTGCAGCCTCAGTCTTTCAATCCCTCATATACTTATGGCAAATTGGTGATTTACAGGTTTACGCAGTTAAAAGAAGAGGAGAAGAAGAAAAAGTTAAGCAAGGCACTGCCCGTGGATGAAGTTCAACCTCTGGCTTCGGCTTCTGTTTCCGATGATGGCTCGGATGTAAAAAACGAGAAG

Protein sequence

>MS.gene055748.t1

MAKTLISSPSFLGTPLPSLHRNNFSPNRTRLYTKVHFSFHQIPPIQSLTHSIDVTGVFARAEGLLYTLADAAVTADAVTSTSTSTDVAVQKNGGWFGFISDAMEFVLKILKDGLSAVHVPYSYGFAIILLTLIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLILSQYVSMEIMKPPQTNDPTQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQIWLRKLGGAKPAVNEDAGGIITAGRAKRSFSKPEKDGERFTQLKEEEKKKKLSKALPVDEVQPLASASVSDDGSDVKNEK