AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055750.t1 MTR_4g063705 85.312 320 9 3 1 285 1 317 0.0 533
MS.gene055750.t1 MTR_3g086250 46.108 334 127 4 1 285 1 330 1.97e-86 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055750.t1 AT2G28800 69.767 301 49 4 24 285 40 337 1.75e-143 407
MS.gene055750.t1 AT2G28800 69.767 301 49 4 24 285 40 337 2.77e-143 406
MS.gene055750.t1 AT2G28800 69.767 301 49 4 24 285 40 337 1.14e-142 409
MS.gene055750.t1 AT2G28800 70.588 272 66 6 24 285 40 307 1.18e-127 370
MS.gene055750.t1 AT1G24490 57.308 260 76 1 61 285 62 321 9.24e-92 281
MS.gene055750.t1 AT1G24490 45.385 260 70 2 61 285 62 284 3.21e-60 198

Find 85 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGTTACTCAGATATTAA+AGG 0.235942 4.4:-42358466 MS.gene055750:intron
AGGATTGAATTGGTGGAATT+TGG 0.254625 4.4:+42359400 None:intergenic
CATCAGGACTAACAATTTAC+TGG 0.275942 4.4:-42355142 None:intergenic
GCAGGATGGCCATCCACCTT+TGG 0.313210 4.4:-42355411 MS.gene055750:intron
TGCCATGGAGTTTGTTCTTA+AGG 0.317066 4.4:-42359217 MS.gene055750:intron
AAACCTTCAACCTAAAATTA+AGG 0.326230 4.4:-42358113 MS.gene055750:CDS
ATAGCAAATCCATACGAATA+AGG 0.348748 4.4:+42358420 None:intergenic
ACTCATTCTATTGATGTTAC+CGG 0.363596 4.4:-42359375 MS.gene055750:CDS
ATTGCTCACTCTTATTGTTA+AGG 0.371624 4.4:-42358394 MS.gene055750:CDS
AACACCCCTCACCTGATTGC+CGG 0.380738 4.4:+42358072 None:intergenic
CAGGATGGCCATCCACCTTT+GGG 0.383616 4.4:-42355410 MS.gene055750:CDS
TATATAGTCTGGTACGGTTA+GGG 0.385089 4.4:+42359445 None:intergenic
GTATATAGTCTGGTACGGTT+AGG 0.386944 4.4:+42359444 None:intergenic
TGAGAAAGAATAAGAAGAAC+AGG 0.394821 4.4:+42355356 None:intergenic
GAATGAGTTAAGGATTGAAT+TGG 0.407264 4.4:+42359390 None:intergenic
GAATACAACTTGAGACTTCA+AGG 0.408158 4.4:-42357932 MS.gene055750:CDS
CCAAGCTGGGGTTAACCCTT+TGG 0.412436 4.4:-42357901 MS.gene055750:CDS
GCTCGCCGATGCCGCCGTTA+CGG 0.412973 4.4:-42359319 MS.gene055750:CDS
GCAGAAGAACGGAGGTTGTT+TGG 0.419439 4.4:-42359253 MS.gene055750:CDS
TCTTTCTCAATATGTTTCAA+TGG 0.427391 4.4:-42355342 MS.gene055750:CDS
GCTACTATTCCCGTCTGGAT+TGG 0.430547 4.4:-42357707 MS.gene055750:CDS
ACTTCCTTTGACAAAGCAAC+AGG 0.431867 4.4:-42358364 MS.gene055750:intron
TATAGGTTGTTTACCGACTT+TGG 0.435935 4.4:-42357729 MS.gene055750:intron
GCCGGCATATCTTTCTTGAA+TGG 0.437024 4.4:+42358090 None:intergenic
AGAAAGATATGCCGGCAATC+AGG 0.452072 4.4:-42358083 MS.gene055750:intron
TCAAGGCTATATACCCAAGC+TGG 0.459348 4.4:-42357915 MS.gene055750:CDS
GTGAACTTTGGTATATAGTC+TGG 0.466563 4.4:+42359434 None:intergenic
ATCGGCCGTAACGGCGGCAT+CGG 0.468950 4.4:+42359314 None:intergenic
AACATCAATAGAATGAGTTA+AGG 0.469067 4.4:+42359380 None:intergenic
CTTTGGCTACTATTCCCGTC+TGG 0.472299 4.4:-42357712 MS.gene055750:CDS
CACAGCAACATCCGTGGAAG+TGG 0.479567 4.4:+42359275 None:intergenic
TTTATCTAATGTGGCAAATG+AGG 0.481648 4.4:-42357672 MS.gene055750:intron
AAGTTGTTGCGGTGAAGTGA+AGG 0.492325 4.4:+42359471 None:intergenic
TGAGTTAAGGATTGAATTGG+TGG 0.495040 4.4:+42359393 None:intergenic
TTCTCACTATCTGTGCCATC+AGG 0.496768 4.4:-42355158 MS.gene055750:CDS
TTGCCACATTAGATAAAGCT+TGG 0.497398 4.4:+42357678 None:intergenic
CACTTCCACTTCCACTTCCA+CGG 0.497958 4.4:-42359286 MS.gene055750:CDS
ATGGCCATCCACCTTTGGGT+TGG 0.506568 4.4:-42355406 MS.gene055750:CDS
CAAAGGGTTAACCCCAGCTT+GGG 0.507179 4.4:+42357902 None:intergenic
ATTTCATCTCCATCGTTCCT+CGG 0.507658 4.4:-42359504 MS.gene055750:CDS
AACATCCGTGGAAGTGGAAG+TGG 0.509079 4.4:+42359281 None:intergenic
ATTGAATTGGTGGAATTTGG+TGG 0.511544 4.4:+42359403 None:intergenic
ATAAAGAAGTCCTTCAGCTC+TGG 0.512310 4.4:+42359344 None:intergenic
CAGTAAATTGTTAGTCCTGA+TGG 0.520024 4.4:+42355143 None:intergenic
CTAACCTGTTGCTTTGTCAA+AGG 0.522023 4.4:+42358360 None:intergenic
GCTGGGGTTAACCCTTTGGC+AGG 0.522528 4.4:-42357897 MS.gene055750:intron
AAGTTTCTTCCACTCATGAT+CGG 0.524406 4.4:-42355185 MS.gene055750:CDS
CCAAAGGGTTAACCCCAGCT+TGG 0.524993 4.4:+42357901 None:intergenic
GTGGAAACTGAAGTGAACTT+TGG 0.525784 4.4:+42359422 None:intergenic
GCCATTCAAGAAAGATATGC+CGG 0.529950 4.4:-42358091 MS.gene055750:CDS
GTGCATGTGCCTTATTCGTA+TGG 0.532237 4.4:-42358429 MS.gene055750:CDS
TTGCGGTGAAGTGAAGGAAG+TGG 0.533549 4.4:+42359477 None:intergenic
ATATAACTGTACCTGCCAAA+GGG 0.541020 4.4:+42357886 None:intergenic
GGTGTCTTCGCCAGAGCTGA+AGG 0.553352 4.4:-42359354 MS.gene055750:CDS
CTTTGGTATATAGTCTGGTA+CGG 0.556415 4.4:+42359439 None:intergenic
CAAGGCTATATACCCAAGCT+GGG 0.556897 4.4:-42357914 MS.gene055750:CDS
ATACCAAGCTTTATCTAATG+TGG 0.557798 4.4:-42357681 MS.gene055750:CDS
GAGAAGTAGCCGATCATGAG+TGG 0.561223 4.4:+42355176 None:intergenic
GATATAACTGTACCTGCCAA+AGG 0.566849 4.4:+42357885 None:intergenic
AGTGACTGCATCGGCCGTAA+CGG 0.580459 4.4:+42359305 None:intergenic
GATGTTGCTGTGCAGAAGAA+CGG 0.586401 4.4:-42359264 MS.gene055750:CDS
CCTGACATGCTTACCTGAGG+TGG 0.590658 4.4:+42355308 None:intergenic
GGAAATCATGAAACCACCTC+AGG 0.590966 4.4:-42355321 MS.gene055750:intron
AAGAACAAACTCCATGGCAT+CGG 0.591393 4.4:+42359221 None:intergenic
CATGCCAACCCAAAGGTGGA+TGG 0.591741 4.4:+42355402 None:intergenic
TTCAGCTCTGGCGAAGACAC+CGG 0.593369 4.4:+42359356 None:intergenic
GTTACTCAGATATTAAAGGA+TGG 0.599267 4.4:-42358462 MS.gene055750:intron
AGTGGAGTTCCGAGGAACGA+TGG 0.603205 4.4:+42359495 None:intergenic
GACTGCATCGGCCGTAACGG+CGG 0.605216 4.4:+42359308 None:intergenic
TGAAATCAGTGTCTTCGCCA+TGG 0.606830 4.4:+42359521 None:intergenic
TGGTATAGACCAATCCAGAC+GGG 0.615542 4.4:+42357698 None:intergenic
TACCTTAAGAACAAACTCCA+TGG 0.622891 4.4:+42359215 None:intergenic
GGAAGTGGAAGTGACTGCAT+CGG 0.629612 4.4:+42359296 None:intergenic
GTGAAGGAAGTGGAGTTCCG+AGG 0.644425 4.4:+42359487 None:intergenic
TTGGTATAGACCAATCCAGA+CGG 0.649063 4.4:+42357697 None:intergenic
ATATAGTCTGGTACGGTTAG+GGG 0.652620 4.4:+42359446 None:intergenic
GTGTCATGCCAACCCAAAGG+TGG 0.654970 4.4:+42355398 None:intergenic
CTTTGTCAAAGGAAGTGTAG+CGG 0.665172 4.4:+42358371 None:intergenic
CTTCTGCACAGCAACATCCG+TGG 0.668398 4.4:+42359269 None:intergenic
ACGGGAATAGTAGCCAAAGT+CGG 0.680935 4.4:+42357716 None:intergenic
GGTTAGGGGAGAAGTTGTTG+CGG 0.683683 4.4:+42359460 None:intergenic
ATACGAATAAGGCACATGCA+CGG 0.688460 4.4:+42358431 None:intergenic
GCAGTGTCATGCCAACCCAA+AGG 0.709975 4.4:+42355395 None:intergenic
AAGGCTATATACCCAAGCTG+GGG 0.714930 4.4:-42357913 MS.gene055750:CDS
GTTGCTGTGCAGAAGAACGG+AGG 0.748792 4.4:-42359261 MS.gene055750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTAA+TGG - chr4.4:42357951-42357970 MS.gene055750:intron 0.0%
!! AAAAAAAAAAAAAAAAAACC+TGG + chr4.4:42357949-42357968 None:intergenic 10.0%
!! AAACAATTTGTAAAAAAAAA+GGG + chr4.4:42358575-42358594 None:intergenic 10.0%
!! TAAAAAAAAAAAAGTAAGTT+AGG + chr4.4:42359415-42359434 None:intergenic 10.0%
!! TTTATTTATTTATATCAGTA+TGG - chr4.4:42359084-42359103 MS.gene055750:intron 10.0%
!!! ATATTTACTTTAGAATAAAT+TGG + chr4.4:42356639-42356658 None:intergenic 10.0%
!!! TTTTTTTTTTTTTAATGGTT+GGG - chr4.4:42357956-42357975 MS.gene055750:intron 10.0%
!!! TTTTTTTTTTTTTTAATGGT+TGG - chr4.4:42357955-42357974 MS.gene055750:intron 10.0%
!! GAAACAATTTGTAAAAAAAA+AGG + chr4.4:42358576-42358595 None:intergenic 15.0%
!! TTTATTTCATATACTTTCTT+TGG + chr4.4:42355554-42355573 None:intergenic 15.0%
!!! ATTGAAAACTTTTAATTTGA+AGG - chr4.4:42357087-42357106 MS.gene055750:intron 15.0%
!!! TTAGTTTCTTTATAGTTTTA+CGG - chr4.4:42358853-42358872 MS.gene055750:intron 15.0%
!!! TTGAAAACTTTTAATTTGAA+GGG - chr4.4:42357088-42357107 MS.gene055750:intron 15.0%
!! AAAATAAACTGAAAACAGTT+TGG - chr4.4:42355591-42355610 MS.gene055750:intron 20.0%
!! AAATAAACTGAAAACAGTTT+GGG - chr4.4:42355592-42355611 MS.gene055750:intron 20.0%
!! AACAAAATCCTTATATAGTA+AGG + chr4.4:42355709-42355728 None:intergenic 20.0%
!! ATGCTATTAATTCTCATAAA+AGG + chr4.4:42358132-42358151 None:intergenic 20.0%
!! CATATGCATAACTTATAAAA+AGG + chr4.4:42357494-42357513 None:intergenic 20.0%
!! CATTAAAAACAAACCATAAA+TGG - chr4.4:42356392-42356411 MS.gene055750:intron 20.0%
!! CCAAAAAAAAAAACCATAAA+TGG - chr4.4:42356424-42356443 MS.gene055750:intron 20.0%
!! TAAAATAATAAGGAAAGAGA+AGG + chr4.4:42359383-42359402 None:intergenic 20.0%
!! TATAAAGAAACTAATTGATG+TGG + chr4.4:42358847-42358866 None:intergenic 20.0%
!! TCATGAAATTTGTATTATTG+AGG - chr4.4:42355739-42355758 MS.gene055750:intron 20.0%
!! TGCTATTAATTCTCATAAAA+GGG + chr4.4:42358131-42358150 None:intergenic 20.0%
!! TGGAAATGTATACATATAAA+TGG - chr4.4:42355993-42356012 MS.gene055750:intron 20.0%
!! TGTTATGTTATATTGTATAG+CGG + chr4.4:42359212-42359231 None:intergenic 20.0%
!!! AATTTGTTTTATGTGATCTT+TGG - chr4.4:42355624-42355643 MS.gene055750:intron 20.0%
!!! ACTTATTTTCATAAGCTTTA+TGG + chr4.4:42358684-42358703 None:intergenic 20.0%
!!! AGTTTTCTTCTACATTTTTT+TGG - chr4.4:42359030-42359049 MS.gene055750:intron 20.0%
!!! CCATTTATGGTTTTTTTTTT+TGG + chr4.4:42356427-42356446 None:intergenic 20.0%
!!! TAGCGTTGTAATTTTTTTTT+TGG - chr4.4:42358280-42358299 MS.gene055750:intron 20.0%
!!! TAGTTTTGTTTTCCTTTTTA+TGG + chr4.4:42356110-42356129 None:intergenic 20.0%
!!! TCAGTTTATTTTCATAAGTT+CGG + chr4.4:42355583-42355602 None:intergenic 20.0%
!!! TGACTTTATTTAATACATGT+AGG - chr4.4:42356504-42356523 MS.gene055750:intron 20.0%
!!! TGTTTTTCTCAAAAAAAAAG+AGG + chr4.4:42358106-42358125 None:intergenic 20.0%
! AAAAAGAAAGTGAGAAAAGA+GGG + chr4.4:42359001-42359020 None:intergenic 25.0%
! AAACATGACCTTACTATATA+AGG - chr4.4:42355698-42355717 MS.gene055750:intron 25.0%
! AAACCTTCAACCTAAAATTA+AGG - chr4.4:42356549-42356568 MS.gene055750:intron 25.0%
! AACAAGCAAATGATTTACTA+GGG + chr4.4:42358811-42358830 None:intergenic 25.0%
! AACATCAATAGAATGAGTTA+AGG + chr4.4:42355285-42355304 None:intergenic 25.0%
! AACATTTGCAATATCATAAC+TGG - chr4.4:42356878-42356897 MS.gene055750:intron 25.0%
! ACATTTGCAATATCATAACT+GGG - chr4.4:42356879-42356898 MS.gene055750:intron 25.0%
! ACTTTAGTATTTCTTCTCTT+TGG - chr4.4:42358971-42358990 MS.gene055750:intron 25.0%
! AGTTGAGATGAAAATGATAA+AGG + chr4.4:42356812-42356831 None:intergenic 25.0%
! ATCATTTATCAAGATGTAGT+AGG - chr4.4:42359150-42359169 MS.gene055750:intron 25.0%
! CAAATTGAAAAACTAAGTAC+GGG + chr4.4:42358253-42358272 None:intergenic 25.0%
! CAATATACAGCAATTTCTAT+AGG - chr4.4:42356327-42356346 MS.gene055750:intron 25.0%
! CCAAATTGAAAAACTAAGTA+CGG + chr4.4:42358254-42358273 None:intergenic 25.0%
! CTGAAAGAAAAATCCATTTA+TGG + chr4.4:42356440-42356459 None:intergenic 25.0%
! CTTAATAACTATGCATGAAT+AGG + chr4.4:42358224-42358243 None:intergenic 25.0%
! GTCTGCTTTGTAAAATAATA+AGG + chr4.4:42359393-42359412 None:intergenic 25.0%
! TAAAAAGAAAGTGAGAAAAG+AGG + chr4.4:42359002-42359021 None:intergenic 25.0%
! TAACAAGCAAATGATTTACT+AGG + chr4.4:42358812-42358831 None:intergenic 25.0%
! TACAAATTTCATGAATCTCA+AGG + chr4.4:42355733-42355752 None:intergenic 25.0%
! TCATGTAAAATGCCATAAAA+AGG - chr4.4:42356095-42356114 MS.gene055750:intron 25.0%
! TCTTTCTCAATATGTTTCAA+TGG - chr4.4:42359320-42359339 MS.gene055750:CDS 25.0%
! TTATATAGTAAGGTCATGTT+TGG + chr4.4:42355699-42355718 None:intergenic 25.0%
! TTTAAATGAGAACGATGTTA+AGG - chr4.4:42355851-42355870 MS.gene055750:intron 25.0%
! TTTCTCAAAAAACAAAGGTA+CGG + chr4.4:42358394-42358413 None:intergenic 25.0%
!! AAATCATTTGCTTGTTACAA+TGG - chr4.4:42358815-42358834 MS.gene055750:intron 25.0%
!! GGCAATTTTATCATTTGTAT+AGG - chr4.4:42356916-42356935 MS.gene055750:intron 25.0%
!! GTGTTTATAAGAGTGTATTT+AGG + chr4.4:42358787-42358806 None:intergenic 25.0%
!! TTGTGTTACTCAGATATTAA+AGG - chr4.4:42356196-42356215 MS.gene055750:intron 25.0%
!! TTTCTCACTTTCTTTTTACA+GGG - chr4.4:42359004-42359023 MS.gene055750:intron 25.0%
!! TTTTCTCACTTTCTTTTTAC+AGG - chr4.4:42359003-42359022 MS.gene055750:intron 25.0%
!!! ATACAAATTGTTTCTACCAA+GGG - chr4.4:42357776-42357795 MS.gene055750:intron 25.0%
!!! ATGATAACTCTAAAGCAAAA+GGG + chr4.4:42356079-42356098 None:intergenic 25.0%
!!! TATACAAATTGTTTCTACCA+AGG - chr4.4:42357775-42357794 MS.gene055750:intron 25.0%
!!! TATGGTTTTTTTTTTTGGAC+TGG + chr4.4:42356422-42356441 None:intergenic 25.0%
!!! TTGTTTTTAATGTTTCAACG+AGG + chr4.4:42356384-42356403 None:intergenic 25.0%
!!! TTTTCATAAGCTTTATGGAT+AGG + chr4.4:42358679-42358698 None:intergenic 25.0%
!!! TTTTTTTTAATGGTTGGGTA+CGG - chr4.4:42357961-42357980 MS.gene055750:intron 25.0%
ACAAGCAAATGATTTACTAG+GGG + chr4.4:42358810-42358829 None:intergenic 30.0%
ACGAGGTTATCATAATTTCA+TGG + chr4.4:42356367-42356386 None:intergenic 30.0%
ACTCATTCTATTGATGTTAC+CGG - chr4.4:42355287-42355306 MS.gene055750:intron 30.0%
AGTAAATGTAACTAGGAAGT+AGG - chr4.4:42358919-42358938 MS.gene055750:intron 30.0%
ATAGCAAATCCATACGAATA+AGG + chr4.4:42356245-42356264 None:intergenic 30.0%
ATCCTGAAATTATATGTTGC+AGG - chr4.4:42355879-42355898 MS.gene055750:intron 30.0%
ATGAAAAAGCCAAGAAATTC+CGG + chr4.4:42357188-42357207 None:intergenic 30.0%
ATTGCTCACTCTTATTGTTA+AGG - chr4.4:42356268-42356287 MS.gene055750:intron 30.0%
ATTTATCAAGATGTAGTAGG+CGG - chr4.4:42359153-42359172 MS.gene055750:intron 30.0%
ATTTCAGTAAATACGAGACA+TGG - chr4.4:42357538-42357557 MS.gene055750:intron 30.0%
GAATGAGTTAAGGATTGAAT+TGG + chr4.4:42355275-42355294 None:intergenic 30.0%
GCTTGCAAAAATATATGCAA+AGG - chr4.4:42357466-42357485 MS.gene055750:intron 30.0%
GTATTCTTTCCTTGAAATGA+GGG + chr4.4:42356716-42356735 None:intergenic 30.0%
GTCTTGTAGTAAATGTAACT+AGG - chr4.4:42358912-42358931 MS.gene055750:intron 30.0%
GTTACTCAGATATTAAAGGA+TGG - chr4.4:42356200-42356219 MS.gene055750:intron 30.0%
TAAAGTACGTTCAAAACCAA+CGG + chr4.4:42355835-42355854 None:intergenic 30.0%
TCCTGAAATTATATGTTGCA+GGG - chr4.4:42355880-42355899 MS.gene055750:intron 30.0%
TCTAAGAAAAAACTCAACGA+CGG + chr4.4:42355804-42355823 None:intergenic 30.0%
TGAGAAAGAATAAGAAGAAC+AGG + chr4.4:42359309-42359328 None:intergenic 30.0%
TGTACCTTAAAATGATAGCA+TGG - chr4.4:42356665-42356684 MS.gene055750:intron 30.0%
TGTATTCTTTCCTTGAAATG+AGG + chr4.4:42356717-42356736 None:intergenic 30.0%
TGTTAACAGAAGGTTTCTTA+TGG - chr4.4:42357113-42357132 MS.gene055750:intron 30.0%
TTTATCTAATGTGGCAAATG+AGG - chr4.4:42356990-42357009 MS.gene055750:intron 30.0%
! ACAACCATGCTATCATTTTA+AGG + chr4.4:42356672-42356691 None:intergenic 30.0%
! ACTGAAATCTAAGACTAACT+GGG + chr4.4:42357526-42357545 None:intergenic 30.0%
! AGTTAGGACTTTAGCATTTT+GGG - chr4.4:42357640-42357659 MS.gene055750:intron 30.0%
! ATACCAAGCTTTATCTAATG+TGG - chr4.4:42356981-42357000 MS.gene055750:intron 30.0%
! CAATCCTCCAATTTTATTAC+AGG + chr4.4:42356151-42356170 None:intergenic 30.0%
! GTAATGCTATTTGTTTCGAA+AGG - chr4.4:42356021-42356040 MS.gene055750:intron 30.0%
! TACTGAAATCTAAGACTAAC+TGG + chr4.4:42357527-42357546 None:intergenic 30.0%
! TAGTTAGGACTTTAGCATTT+TGG - chr4.4:42357639-42357658 MS.gene055750:intron 30.0%
! TGCAGATTCTTTTAGTAGTT+AGG - chr4.4:42357624-42357643 MS.gene055750:intron 30.0%
! TTCTCAAAAAACAAAGGTAC+GGG + chr4.4:42358393-42358412 None:intergenic 30.0%
!! AATTGTTTCTACCATCAAAG+AGG - chr4.4:42358587-42358606 MS.gene055750:intron 30.0%
!! AGAAGTGTATTCTTTTGAGT+AGG + chr4.4:42359450-42359469 None:intergenic 30.0%
!! CATGATAACTCTAAAGCAAA+AGG + chr4.4:42356080-42356099 None:intergenic 30.0%
!! CCGTACTTAGTTTTTCAATT+TGG - chr4.4:42358251-42358270 MS.gene055750:intron 30.0%
!! TAGTCATTTTACTGAAGATG+AGG - chr4.4:42358158-42358177 MS.gene055750:intron 30.0%
!! TCTTGAATGGCCTTAATTTT+AGG + chr4.4:42356562-42356581 None:intergenic 30.0%
!!! CGAAGTATTTTTTTCGCATT+TGG - chr4.4:42357236-42357255 MS.gene055750:intron 30.0%
!!! CTTCTACATTTTTTTGGTTG+TGG - chr4.4:42359036-42359055 MS.gene055750:intron 30.0%
!!! GTACGTTTATCCTCTTTTTT+TGG - chr4.4:42358011-42358030 MS.gene055750:intron 30.0%
!!! TTTCTTGGCTTTTTCATTTG+TGG - chr4.4:42357191-42357210 MS.gene055750:intron 30.0%
AAAAAAAAAGAGGATGTGCG+TGG + chr4.4:42358096-42358115 None:intergenic 35.0%
AAAAAAAACCTGGTGCTTCA+TGG + chr4.4:42357939-42357958 None:intergenic 35.0%
AAAAAAACCTGGTGCTTCAT+GGG + chr4.4:42357938-42357957 None:intergenic 35.0%
AACTCTCATTTCCTCTTTGA+TGG + chr4.4:42358601-42358620 None:intergenic 35.0%
AAGTTTCTTCCACTCATGAT+CGG - chr4.4:42359477-42359496 MS.gene055750:CDS 35.0%
AATACTTCGCTTATGAGCAA+AGG + chr4.4:42357225-42357244 None:intergenic 35.0%
AATAGTGATATCGACACAGT+TGG - chr4.4:42358186-42358205 MS.gene055750:intron 35.0%
AATCTGCATCACTAAATGTG+CGG + chr4.4:42357612-42357631 None:intergenic 35.0%
AATGCTCATTTAGTCCCTAT+TGG + chr4.4:42357699-42357718 None:intergenic 35.0%
AGGATTGAATTGGTGGAATT+TGG + chr4.4:42355265-42355284 None:intergenic 35.0%
AGTAATGTAGCAATTTGCGT+AGG - chr4.4:42357439-42357458 MS.gene055750:intron 35.0%
ATATAACTGTACCTGCCAAA+GGG + chr4.4:42356779-42356798 None:intergenic 35.0%
ATTGAATTGGTGGAATTTGG+TGG + chr4.4:42355262-42355281 None:intergenic 35.0%
ATTGTTTCAAGAACCATGAC+TGG + chr4.4:42357357-42357376 None:intergenic 35.0%
ATTTCATTGCCCTCATTTCA+AGG - chr4.4:42356704-42356723 MS.gene055750:intron 35.0%
CAAGCAAATGATTTACTAGG+GGG + chr4.4:42358809-42358828 None:intergenic 35.0%
CAGTAAATTGTTAGTCCTGA+TGG + chr4.4:42359522-42359541 None:intergenic 35.0%
CCACGTTCCTGTAATAAAAT+TGG - chr4.4:42356141-42356160 MS.gene055750:intron 35.0%
CCATGTTTCTCCAAAAAAAG+AGG + chr4.4:42358024-42358043 None:intergenic 35.0%
CGGCATTTCTCAAAAAACAA+AGG + chr4.4:42358399-42358418 None:intergenic 35.0%
CGTTCCTGTAATAAAATTGG+AGG - chr4.4:42356144-42356163 MS.gene055750:intron 35.0%
CTTTGGTATATAGTCTGGTA+CGG + chr4.4:42355226-42355245 None:intergenic 35.0%
GAATACAACTTGAGACTTCA+AGG - chr4.4:42356730-42356749 MS.gene055750:intron 35.0%
GACATCAGACTATTTACTCT+TGG - chr4.4:42357307-42357326 MS.gene055750:intron 35.0%
GTGAACTTTGGTATATAGTC+TGG + chr4.4:42355231-42355250 None:intergenic 35.0%
GTGGCAAATGAGGTAATTAA+TGG - chr4.4:42357000-42357019 MS.gene055750:intron 35.0%
TAAACATTTGAGCAAGTGCT+TGG + chr4.4:42358750-42358769 None:intergenic 35.0%
TAAGACTAACTGGGACAATA+GGG + chr4.4:42357517-42357536 None:intergenic 35.0%
TACCTTAAGAACAAACTCCA+TGG + chr4.4:42355450-42355469 None:intergenic 35.0%
TAGGGACTAAATGAGCATTT+AGG - chr4.4:42357700-42357719 MS.gene055750:CDS 35.0%
TATATAGTCTGGTACGGTTA+GGG + chr4.4:42355220-42355239 None:intergenic 35.0%
TCCCTGCAACATATAATTTC+AGG + chr4.4:42355884-42355903 None:intergenic 35.0%
TGAGTTAAGGATTGAATTGG+TGG + chr4.4:42355272-42355291 None:intergenic 35.0%
TGTAAAAAAAAAGGGCAGCT+CGG + chr4.4:42358567-42358586 None:intergenic 35.0%
TTCTTAGAAGATTGAACCGT+TGG - chr4.4:42355816-42355835 MS.gene055750:intron 35.0%
TTGCCACATTAGATAAAGCT+TGG + chr4.4:42356987-42357006 None:intergenic 35.0%
! CATTTTACTGAAGATGAGGA+AGG - chr4.4:42358162-42358181 MS.gene055750:intron 35.0%
! CCAATTTTATTACAGGAACG+TGG + chr4.4:42356144-42356163 None:intergenic 35.0%
! CTCTTGGCAATCATTTTCTT+TGG - chr4.4:42357323-42357342 MS.gene055750:intron 35.0%
! GTTAGGACTTTAGCATTTTG+GGG - chr4.4:42357641-42357660 MS.gene055750:intron 35.0%
! TTAGGACTTTAGCATTTTGG+GGG - chr4.4:42357642-42357661 MS.gene055750:intron 35.0%
! TTTATTGGTTGTGTTGTGGT+AGG - chr4.4:42358885-42358904 MS.gene055750:intron 35.0%
!! AACTCTAAAGCAAAAGGGTA+AGG + chr4.4:42356074-42356093 None:intergenic 35.0%
!! ACTCTAAAGCAAAAGGGTAA+GGG + chr4.4:42356073-42356092 None:intergenic 35.0%
!! CTTTATAGTTTTACGGAGCT+CGG - chr4.4:42358860-42358879 MS.gene055750:intron 35.0%
!! TATAGGTTGTTTACCGACTT+TGG - chr4.4:42356933-42356952 MS.gene055750:intron 35.0%
!!! CCTCTTTTTTTGGAGAAACA+TGG - chr4.4:42358021-42358040 MS.gene055750:intron 35.0%
!!! GGAGGATTGCATTTTTTAAC+AGG - chr4.4:42356162-42356181 MS.gene055750:intron 35.0%
!!! TGGCCTTAATTTTAGGTTGA+AGG + chr4.4:42356555-42356574 None:intergenic 35.0%
AAAGTGGATCCGGAATTTCT+TGG - chr4.4:42357176-42357195 MS.gene055750:intron 40.0%
AACTGGGCTGTACTTAAAGA+AGG - chr4.4:42356895-42356914 MS.gene055750:intron 40.0%
AAGAACAAACTCCATGGCAT+CGG + chr4.4:42355444-42355463 None:intergenic 40.0%
ACGTCTGTTAATTGTTGTGC+AGG - chr4.4:42359233-42359252 MS.gene055750:CDS 40.0%
ACTTCCTTTGACAAAGCAAC+AGG - chr4.4:42356298-42356317 MS.gene055750:intron 40.0%
AGACATGGTTTATGCAGCAT+GGG - chr4.4:42357553-42357572 MS.gene055750:intron 40.0%
AGCCTCTTGTGTAAAACACA+GGG - chr4.4:42358470-42358489 MS.gene055750:intron 40.0%
ATAAAGAAGTCCTTCAGCTC+TGG + chr4.4:42355321-42355340 None:intergenic 40.0%
ATACGAATAAGGCACATGCA+CGG + chr4.4:42356234-42356253 None:intergenic 40.0%
ATATAGTCTGGTACGGTTAG+GGG + chr4.4:42355219-42355238 None:intergenic 40.0%
ATTTCATCTCCATCGTTCCT+CGG - chr4.4:42355158-42355177 MS.gene055750:CDS 40.0%
CTAAGACTAACTGGGACAAT+AGG + chr4.4:42357518-42357537 None:intergenic 40.0%
CTGTTAATTGTTGTGCAGGA+TGG - chr4.4:42359237-42359256 MS.gene055750:CDS 40.0%
GATATAACTGTACCTGCCAA+AGG + chr4.4:42356780-42356799 None:intergenic 40.0%
GCCATTCAAGAAAGATATGC+CGG - chr4.4:42356571-42356590 MS.gene055750:intron 40.0%
GTAACTAGGAAGTAGGAACT+GGG - chr4.4:42358926-42358945 MS.gene055750:intron 40.0%
GTATATAGTCTGGTACGGTT+AGG + chr4.4:42355221-42355240 None:intergenic 40.0%
GTGGAAACTGAAGTGAACTT+TGG + chr4.4:42355243-42355262 None:intergenic 40.0%
TACGGGTACGTTTAGCAAAA+CGG + chr4.4:42357865-42357884 None:intergenic 40.0%
TCCACCAGTTTCAATGTACT+TGG - chr4.4:42356047-42356066 MS.gene055750:intron 40.0%
TGTAACTAGGAAGTAGGAAC+TGG - chr4.4:42358925-42358944 MS.gene055750:intron 40.0%
TTCTTATGGATCCCTTCTCT+CGG - chr4.4:42357127-42357146 MS.gene055750:intron 40.0%
TTGAAGGGACTGTTAACAGA+AGG - chr4.4:42357103-42357122 MS.gene055750:intron 40.0%
TTGGTATAGACCAATCCAGA+CGG + chr4.4:42356968-42356987 None:intergenic 40.0%
! CTTTGTCAAAGGAAGTGTAG+CGG + chr4.4:42356294-42356313 None:intergenic 40.0%
! GGTGTTTATTGGTTGTGTTG+TGG - chr4.4:42358881-42358900 MS.gene055750:intron 40.0%
! TGCCATGGAGTTTGTTCTTA+AGG - chr4.4:42355445-42355464 MS.gene055750:intron 40.0%
! TTTGGAGCTTATTCCAGTCA+TGG - chr4.4:42357341-42357360 MS.gene055750:intron 40.0%
! TTTTAATGGTTGGGTACGGA+CGG - chr4.4:42357965-42357984 MS.gene055750:intron 40.0%
!! CTAACCTGTTGCTTTGTCAA+AGG + chr4.4:42356305-42356324 None:intergenic 40.0%
!! TTGGACTGGCAATCCATTTA+TGG + chr4.4:42356408-42356427 None:intergenic 40.0%
AAGGCTATATACCCAAGCTG+GGG - chr4.4:42356749-42356768 MS.gene055750:intron 45.0%
AAGTTGTTGCGGTGAAGTGA+AGG + chr4.4:42355194-42355213 None:intergenic 45.0%
ACAACTTTACCATTGCGCCA+AGG + chr4.4:42357806-42357825 None:intergenic 45.0%
ACAGGAACGTGGAACATTGT+AGG + chr4.4:42356133-42356152 None:intergenic 45.0%
ACATATGCAGGTCCAGGAAT+GGG + chr4.4:42358529-42358548 None:intergenic 45.0%
ACGGGAATAGTAGCCAAAGT+CGG + chr4.4:42356949-42356968 None:intergenic 45.0%
ACTAAAGCTCCCACATATGC+AGG + chr4.4:42358541-42358560 None:intergenic 45.0%
AGAAAGATATGCCGGCAATC+AGG - chr4.4:42356579-42356598 MS.gene055750:intron 45.0%
AGATCTTGAACCTGTGACCA+CGG + chr4.4:42358444-42358463 None:intergenic 45.0%
AGCATTGCTGCTAGACAAAG+TGG - chr4.4:42357160-42357179 MS.gene055750:intron 45.0%
AGGGCCAAGTACATTGAAAC+TGG + chr4.4:42356054-42356073 None:intergenic 45.0%
ATACCTGACATGCTTACCTG+AGG + chr4.4:42359360-42359379 None:intergenic 45.0%
ATTCCTGGACCTGCATATGT+GGG - chr4.4:42358529-42358548 MS.gene055750:intron 45.0%
CAAGGCTATATACCCAAGCT+GGG - chr4.4:42356748-42356767 MS.gene055750:intron 45.0%
CACCACAGAATGTGCCAATA+GGG - chr4.4:42357682-42357701 MS.gene055750:CDS 45.0%
CAGCCTCTTGTGTAAAACAC+AGG - chr4.4:42358469-42358488 MS.gene055750:intron 45.0%
GAGACATGGTTTATGCAGCA+TGG - chr4.4:42357552-42357571 MS.gene055750:intron 45.0%
GATGTTGCTGTGCAGAAGAA+CGG - chr4.4:42355398-42355417 MS.gene055750:CDS 45.0%
GCCAAGTACATTGAAACTGG+TGG + chr4.4:42356051-42356070 None:intergenic 45.0%
GCCGGCATATCTTTCTTGAA+TGG + chr4.4:42356575-42356594 None:intergenic 45.0%
GCCTCTTGTGTAAAACACAG+GGG - chr4.4:42358471-42358490 MS.gene055750:intron 45.0%
GGAAATCATGAAACCACCTC+AGG - chr4.4:42359341-42359360 MS.gene055750:CDS 45.0%
GTAGGGTACACCAAAATGGT+GGG - chr4.4:42358502-42358521 MS.gene055750:intron 45.0%
GTCACAGACTCACAAGTACT+AGG + chr4.4:42357274-42357293 None:intergenic 45.0%
GTTGTTGTCACGTGACTGAA+AGG - chr4.4:42357821-42357840 MS.gene055750:intron 45.0%
TCAAGGCTATATACCCAAGC+TGG - chr4.4:42356747-42356766 MS.gene055750:intron 45.0%
TCACCACAGAATGTGCCAAT+AGG - chr4.4:42357681-42357700 MS.gene055750:CDS 45.0%
TGGTATAGACCAATCCAGAC+GGG + chr4.4:42356967-42356986 None:intergenic 45.0%
TGTCTAGCAGCAATGCTAGT+GGG + chr4.4:42357157-42357176 None:intergenic 45.0%
TTCTCACTATCTGTGCCATC+AGG - chr4.4:42359504-42359523 MS.gene055750:CDS 45.0%
TTGTCTAGCAGCAATGCTAG+TGG + chr4.4:42357158-42357177 None:intergenic 45.0%
TTTAATGGTTGGGTACGGAC+GGG - chr4.4:42357966-42357985 MS.gene055750:intron 45.0%
TTTGCTAAACGTACCCGTAC+CGG - chr4.4:42357866-42357885 MS.gene055750:intron 45.0%
! GGTTTTTATCTCCGATGCCA+TGG - chr4.4:42355430-42355449 MS.gene055750:intron 45.0%
! GTGCATGTGCCTTATTCGTA+TGG - chr4.4:42356233-42356252 MS.gene055750:intron 45.0%
! TCCCCTGTGTTTTACACAAG+AGG + chr4.4:42358475-42358494 None:intergenic 45.0%
!! ACTGAAAGGCTCTGAAGCAT+GGG - chr4.4:42357835-42357854 MS.gene055750:intron 45.0%
!! ACTTTAGCATTTTGGGGGTG+GGG - chr4.4:42357647-42357666 MS.gene055750:intron 45.0%
!! GACTTTAGCATTTTGGGGGT+GGG - chr4.4:42357646-42357665 MS.gene055750:intron 45.0%
!! GTACTGCAGTGGTACTGATT+GGG - chr4.4:42357989-42358008 MS.gene055750:intron 45.0%
!! TTACGGAGCTCGGTGTTTAT+TGG - chr4.4:42358870-42358889 MS.gene055750:intron 45.0%
!!! TTTTTTTTTTTTTTGTTATA+TGG - chr4.4:42355973-42355992 MS.gene055750:intron 5.0%
AACATCCGTGGAAGTGGAAG+TGG + chr4.4:42355384-42355403 None:intergenic 50.0%
ATATGCCGGCAATCAGGTGA+GGG - chr4.4:42356585-42356604 MS.gene055750:intron 50.0%
CAAAGGGTTAACCCCAGCTT+GGG + chr4.4:42356763-42356782 None:intergenic 50.0%
CACATATGCAGGTCCAGGAA+TGG + chr4.4:42358530-42358549 None:intergenic 50.0%
CACTTCCACTTCCACTTCCA+CGG - chr4.4:42355376-42355395 MS.gene055750:CDS 50.0%
CATTCCTGGACCTGCATATG+TGG - chr4.4:42358528-42358547 MS.gene055750:intron 50.0%
CGTAGGGTACACCAAAATGG+TGG - chr4.4:42358501-42358520 MS.gene055750:intron 50.0%
CTGCGTAGGGTACACCAAAA+TGG - chr4.4:42358498-42358517 MS.gene055750:intron 50.0%
CTTTGGCTACTATTCCCGTC+TGG - chr4.4:42356950-42356969 MS.gene055750:intron 50.0%
GAGAAGTAGCCGATCATGAG+TGG + chr4.4:42359489-42359508 None:intergenic 50.0%
GATCTTGAACCTGTGACCAC+GGG + chr4.4:42358443-42358462 None:intergenic 50.0%
GCAGAAGAACGGAGGTTGTT+TGG - chr4.4:42355409-42355428 MS.gene055750:CDS 50.0%
GCTACTATTCCCGTCTGGAT+TGG - chr4.4:42356955-42356974 MS.gene055750:intron 50.0%
GCTGCTAGACAAAGTGGATC+CGG - chr4.4:42357166-42357185 MS.gene055750:intron 50.0%
GGAAGTGGAAGTGACTGCAT+CGG + chr4.4:42355369-42355388 None:intergenic 50.0%
GGTTAGGGGAGAAGTTGTTG+CGG + chr4.4:42355205-42355224 None:intergenic 50.0%
GTCCCTATTGGCACATTCTG+TGG + chr4.4:42357687-42357706 None:intergenic 50.0%
TATGCAGCATGGGTGCAAGT+TGG - chr4.4:42357563-42357582 MS.gene055750:intron 50.0%
TTAATGGTTGGGTACGGACG+GGG - chr4.4:42357967-42357986 MS.gene055750:intron 50.0%
TTATGGATCCCTTCTCTCGG+TGG - chr4.4:42357130-42357149 MS.gene055750:intron 50.0%
TTGCGGTGAAGTGAAGGAAG+TGG + chr4.4:42355188-42355207 None:intergenic 50.0%
TTGCTAAACGTACCCGTACC+GGG - chr4.4:42357867-42357886 MS.gene055750:intron 50.0%
TTTCTACCAAGGGAGAGCCT+TGG - chr4.4:42357786-42357805 MS.gene055750:intron 50.0%
! AAAATGGTGGGACCCATTCC+TGG - chr4.4:42358514-42358533 MS.gene055750:intron 50.0%
! AGGAATGGGTCCCACCATTT+TGG + chr4.4:42358515-42358534 None:intergenic 50.0%
!! CTTTAGCATTTTGGGGGTGG+GGG - chr4.4:42357648-42357667 MS.gene055750:intron 50.0%
!! GACTGAAAGGCTCTGAAGCA+TGG - chr4.4:42357834-42357853 MS.gene055750:intron 50.0%
!! GGACTTTAGCATTTTGGGGG+TGG - chr4.4:42357645-42357664 MS.gene055750:intron 50.0%
!! GGTACTGCAGTGGTACTGAT+TGG - chr4.4:42357988-42358007 MS.gene055750:intron 50.0%
AACACAGGGGAAGACTGCGT+AGG - chr4.4:42358484-42358503 MS.gene055750:intron 55.0%
AACACCCCTCACCTGATTGC+CGG + chr4.4:42356593-42356612 None:intergenic 55.0%
ACACAGGGGAAGACTGCGTA+GGG - chr4.4:42358485-42358504 MS.gene055750:intron 55.0%
AGTGGAGTTCCGAGGAACGA+TGG + chr4.4:42355170-42355189 None:intergenic 55.0%
ATGGCCATCCACCTTTGGGT+TGG - chr4.4:42359256-42359275 MS.gene055750:CDS 55.0%
CACAGCAACATCCGTGGAAG+TGG + chr4.4:42355390-42355409 None:intergenic 55.0%
CAGGATGGCCATCCACCTTT+GGG - chr4.4:42359252-42359271 MS.gene055750:CDS 55.0%
CATGCCAACCCAAAGGTGGA+TGG + chr4.4:42359263-42359282 None:intergenic 55.0%
CCAAAGGGTTAACCCCAGCT+TGG + chr4.4:42356764-42356783 None:intergenic 55.0%
CCAAGCTGGGGTTAACCCTT+TGG - chr4.4:42356761-42356780 MS.gene055750:intron 55.0%
CCACCTCAGGTAAGCATGTC+AGG - chr4.4:42359354-42359373 MS.gene055750:CDS 55.0%
CCTGACATGCTTACCTGAGG+TGG + chr4.4:42359357-42359376 None:intergenic 55.0%
CTTCTGCACAGCAACATCCG+TGG + chr4.4:42355396-42355415 None:intergenic 55.0%
GATATGCCGGCAATCAGGTG+AGG - chr4.4:42356584-42356603 MS.gene055750:intron 55.0%
GCAGTGTCATGCCAACCCAA+AGG + chr4.4:42359270-42359289 None:intergenic 55.0%
GTGAAGGAAGTGGAGTTCCG+AGG + chr4.4:42355178-42355197 None:intergenic 55.0%
GTGTCATGCCAACCCAAAGG+TGG + chr4.4:42359267-42359286 None:intergenic 55.0%
GTTGCTGTGCAGAAGAACGG+AGG - chr4.4:42355401-42355420 MS.gene055750:CDS 55.0%
TAGTGGGACCACCGAGAGAA+GGG + chr4.4:42357141-42357160 None:intergenic 55.0%
TATGCCGGCAATCAGGTGAG+GGG - chr4.4:42356586-42356605 MS.gene055750:intron 55.0%
! AGTGACTGCATCGGCCGTAA+CGG + chr4.4:42355360-42355379 None:intergenic 55.0%
! TTCAGCTCTGGCGAAGACAC+CGG + chr4.4:42355309-42355328 None:intergenic 55.0%
AAGGGAGAGCCTTGGCGCAA+TGG - chr4.4:42357794-42357813 MS.gene055750:intron 60.0%
ATTGCGCCAAGGCTCTCCCT+TGG + chr4.4:42357795-42357814 None:intergenic 60.0%
CTAGTGGGACCACCGAGAGA+AGG + chr4.4:42357142-42357161 None:intergenic 60.0%
GCAGGATGGCCATCCACCTT+TGG - chr4.4:42359251-42359270 MS.gene055750:CDS 60.0%
GCTCCCACATATGCAGGTCC+AGG + chr4.4:42358535-42358554 None:intergenic 60.0%
GCTGGGGTTAACCCTTTGGC+AGG - chr4.4:42356765-42356784 MS.gene055750:intron 60.0%
GGTGTCTTCGCCAGAGCTGA+AGG - chr4.4:42355308-42355327 MS.gene055750:intron 60.0%
TGAACCTGTGACCACGGGTG+CGG + chr4.4:42358438-42358457 None:intergenic 60.0%
! GTACGCACCCATGAAGCACC+AGG - chr4.4:42357928-42357947 MS.gene055750:CDS 60.0%
!! CGCGGGTACTGGTACACGTA+CGG - chr4.4:42357895-42357914 MS.gene055750:intron 60.0%
!! GCATTTTGGGGGTGGGGGTA+TGG - chr4.4:42357653-42357672 MS.gene055750:intron 60.0%
ACCAGTACCCGCGCAGTACC+CGG + chr4.4:42357888-42357907 None:intergenic 65.0%
ATCGGCCGTAACGGCGGCAT+CGG + chr4.4:42355351-42355370 None:intergenic 65.0%
GAACCTGTGACCACGGGTGC+GGG + chr4.4:42358437-42358456 None:intergenic 65.0%
GCGGGTACGGGTACGGGATA+CGG + chr4.4:42358419-42358438 None:intergenic 65.0%
TACCCGCGCAGTACCCGGTA+CGG + chr4.4:42357883-42357902 None:intergenic 65.0%
TGTGACCACGGGTGCGGGTA+CGG + chr4.4:42358432-42358451 None:intergenic 65.0%
! GACTGCATCGGCCGTAACGG+CGG + chr4.4:42355357-42355376 None:intergenic 65.0%
! TACCCGTACCGGGTACTGCG+CGG - chr4.4:42357877-42357896 MS.gene055750:intron 65.0%
!! GTACGGACGGGGTACTGCAG+TGG - chr4.4:42357978-42357997 MS.gene055750:intron 65.0%
ACCCGCGCAGTACCCGGTAC+GGG + chr4.4:42357882-42357901 None:intergenic 70.0%
ACGGGTGCGGGTACGGGTAC+GGG + chr4.4:42358425-42358444 None:intergenic 70.0%
CACGGGTGCGGGTACGGGTA+CGG + chr4.4:42358426-42358445 None:intergenic 70.0%
GCTCGCCGATGCCGCCGTTA+CGG - chr4.4:42355343-42355362 MS.gene055750:CDS 70.0%
GTACCCGCACCCGTGGTCAC+AGG - chr4.4:42358431-42358450 MS.gene055750:CDS 70.0%
GTGACCACGGGTGCGGGTAC+GGG + chr4.4:42358431-42358450 None:intergenic 70.0%
! ACCCGTACCGGGTACTGCGC+GGG - chr4.4:42357878-42357897 MS.gene055750:intron 70.0%
! ACCGGGTACTGCGCGGGTAC+TGG - chr4.4:42357884-42357903 MS.gene055750:intron 70.0%
CGTACCCGTACCCGCACCCG+TGG - chr4.4:42358424-42358443 MS.gene055750:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 42355143 42359541 42355143 ID=MS.gene055750
chr4.4 mRNA 42355143 42359541 42355143 ID=MS.gene055750.t1;Parent=MS.gene055750
chr4.4 exon 42359218 42359541 42359218 ID=MS.gene055750.t1.exon1;Parent=MS.gene055750.t1
chr4.4 CDS 42359218 42359541 42359218 ID=cds.MS.gene055750.t1;Parent=MS.gene055750.t1
chr4.4 exon 42358365 42358475 42358365 ID=MS.gene055750.t1.exon2;Parent=MS.gene055750.t1
chr4.4 CDS 42358365 42358475 42358365 ID=cds.MS.gene055750.t1;Parent=MS.gene055750.t1
chr4.4 exon 42358084 42358158 42358084 ID=MS.gene055750.t1.exon3;Parent=MS.gene055750.t1
chr4.4 CDS 42358084 42358158 42358084 ID=cds.MS.gene055750.t1;Parent=MS.gene055750.t1
chr4.4 exon 42357898 42357958 42357898 ID=MS.gene055750.t1.exon4;Parent=MS.gene055750.t1
chr4.4 CDS 42357898 42357958 42357898 ID=cds.MS.gene055750.t1;Parent=MS.gene055750.t1
chr4.4 exon 42357673 42357746 42357673 ID=MS.gene055750.t1.exon5;Parent=MS.gene055750.t1
chr4.4 CDS 42357673 42357746 42357673 ID=cds.MS.gene055750.t1;Parent=MS.gene055750.t1
chr4.4 exon 42355322 42355429 42355322 ID=MS.gene055750.t1.exon6;Parent=MS.gene055750.t1
chr4.4 CDS 42355322 42355429 42355322 ID=cds.MS.gene055750.t1;Parent=MS.gene055750.t1
chr4.4 exon 42355143 42355246 42355143 ID=MS.gene055750.t1.exon7;Parent=MS.gene055750.t1
chr4.4 CDS 42355143 42355246 42355143 ID=cds.MS.gene055750.t1;Parent=MS.gene055750.t1
Gene Sequence

>MS.gene055750

ATGGCGAAGACACTGATTTCATCTCCATCGTTCCTCGGAACTCCACTTCCTTCACTTCACCGCAACAACTTCTCCCCTAACCGTACCAGACTATATACCAAAGTTCACTTCAGTTTCCACCAAATTCCACCAATTCAATCCTTAACTCATTCTATTGATGTTACCGGTGTCTTCGCCAGAGCTGAAGGACTTCTTTATACGCTCGCCGATGCCGCCGTTACGGCCGATGCAGTCACTTCCACTTCCACTTCCACGGATGTTGCTGTGCAGAAGAACGGAGGTTGTTTGGTTTTTATCTCCGATGCCATGGAGTTTGTTCTTAAGGTAATCTTCACAACTTGTGCTTTTTAATTTTATCAACTATCTTCTTAATATTCGTAATTTAACTAATTTTGCTTATAATTCATTCCAAAGAAAGTATATGAAATAAAATCAAACCGAACTTATGAAAATAAACTGAAAACAGTTTGGGAGATGTCATAATTTGTTTTATGTGATCTTTGGAACAGTCTCATAAGTGATTATGTTAATAAATAAGCTAAAATAAGTCAATCCAAACATGACCTTACTATATAAGGATTTTGTTGCCTTGAGATTCATGAAATTTGTATTATTGAGGTTGTTTAGACTTTAGATTGCTTATATCTTAAGATACTCTCCGTCGTTGAGTTTTTTCTTAGAAGATTGAACCGTTGGTTTTGAACGTACTTTAAATGAGAACGATGTTAAGGTTCTTATCCTGAAATTATATGTTGCAGGGAAAGTGTTCAGTGTTACTGACTTACTGTTTACTTCTGTTAATTTAATTAAACAAGTTAAACTTGTGTTTTTTTTTTTTTTTTTTGTTATATGGAAATGTATACATATAAATGGAAAGAGTAATGCTATTTGTTTCGAAAGGTTTTCCACCAGTTTCAATGTACTTGGCCCTTACCCTTTTGCTTTAGAGTTATCATGTAAAATGCCATAAAAAGGAAAACAAAACTACCTACAATGTTCCACGTTCCTGTAATAAAATTGGAGGATTGCATTTTTTAACAGGAAATGTTTTGCTTGTGTTACTCAGATATTAAAGGATGGTTTGTCTGCCGTGCATGTGCCTTATTCGTATGGATTTGCTATCATATTGCTCACTCTTATTGTTAAGGCCGCTACACTTCCTTTGACAAAGCAACAGGTTAGTACAATATACAGCAATTTCTATAGGCAAATTTACTGAAACCATGAAATTATGATAACCTCGTTGAAACATTAAAAACAAACCATAAATGGATTGCCAGTCCAAAAAAAAAAACCATAAATGGATTTTTCTTTCAGTTATATGAAATTTAACACATACTATATATCACTAAATGAAGTTCTGACTTTATTTAATACATGTAGGTTGAATCAACACTAGCTATGCAAAACCTTCAACCTAAAATTAAGGCCATTCAAGAAAGATATGCCGGCAATCAGGTGAGGGGTGTTGCTGTTTGTTACTTGTTAAGCTTCCAATTTATTCTAAAGTAAATATTGATTTTGTACCTTAAAATGATAGCATGGTTGTTTCTAACTACTTATTTCATTGCCCTCATTTCAAGGAAAGAATACAACTTGAGACTTCAAGGCTATATACCCAAGCTGGGGTTAACCCTTTGGCAGGTACAGTTATATCTTACTATTGCCTTTATCATTTTCATCTCAACTCTGATTCTGTATAATAATGCTTTGACATGTGATAATATGATGTCAAAACATTTGCAATATCATAACTGGGCTGTACTTAAAGAAGGCAATTTTATCATTTGTATAGGTTGTTTACCGACTTTGGCTACTATTCCCGTCTGGATTGGTCTATACCAAGCTTTATCTAATGTGGCAAATGAGGTAATTAATGGTATATAAACTATTATAATTTGAGATTTTGATAGACGAATTACAAATACATGATTTTTGCTAATTATTGAAAACTTTTAATTTGAAGGGACTGTTAACAGAAGGTTTCTTATGGATCCCTTCTCTCGGTGGTCCCACTAGCATTGCTGCTAGACAAAGTGGATCCGGAATTTCTTGGCTTTTTCATTTGTGGTAAGCTATCCTTTGCTCATAAGCGAAGTATTTTTTTCGCATTTGGCTATTTCTTTTTCCTAGTACTTGTGAGTCTGTGACACTATGATTTTCAGACATCAGACTATTTACTCTTGGCAATCATTTTCTTTGGAGCTTATTCCAGTCATGGTTCTTGAAACAATTTTTTTTTTTTTAAATTGTATGTCATACAGTACAGTTGCTGATAAAAATTCTTTTCATAGTTAGTAATGTAGCAATTTGCGTAGGCTCTGCTTGCAAAAATATATGCAAAGGTTCCTTTTTATAAGTTATGCATATGCCCTATTGTCCCAGTTAGTCTTAGATTTCAGTAAATACGAGACATGGTTTATGCAGCATGGGTGCAAGTTGGATTAAATAGTAGTATATAACATGCCGCACATTTAGTGATGCAGATTCTTTTAGTAGTTAGGACTTTAGCATTTTGGGGGTGGGGGTATGGTCTGTTCACCACAGAATGTGCCAATAGGGACTAAATGAGCATTTAGGTCAACTGCTTAATTAAACATTAATTCACAAGCACTTGTCGTATTAAAGCTTATATACAAATTGTTTCTACCAAGGGAGAGCCTTGGCGCAATGGTAAAGTTGTTGTCACGTGACTGAAAGGCTCTGAAGCATGGGTACTCCGTTTTGCTAAACGTACCCGTACCGGGTACTGCGCGGGTACTGGTACACGTACGGTACGCGTACTGTACGCACCCATGAAGCACCAGGTTTTTTTTTTTTTTTTTTAATGGTTGGGTACGGACGGGGTACTGCAGTGGTACTGATTGGGTACGTTTATCCTCTTTTTTTGGAGAAACATGGAGCAATTATCGTTATTTTTTTGTTTTTTTTATAAAAGTCAAACTTAACTCCACGCACATCCTCTTTTTTTTTGAGAAAAACAAGCCCTTTTATGAGAATTAATAGCATTGAAGCTAGTCATTTTACTGAAGATGAGGAAGGAAATAGTGATATCGACACAGTTGGAGTGTGATTTTTCCTATTCATGCATAGTTATTAAGTTTTATCCCGTACTTAGTTTTTCAATTTGGATGTTTTAGCGTTGTAATTTTTTTTTTGGTTGAATTTTTGTCGTCATTTGAGCAATATAATTTTCTCATGCAATGTTATTTATTTTAAATTTAAAAAAAAAAATTTATCGTAACGTCCCGTACCTTTGTTTTTTGAGAAATGCCGTATCCCGTACCCGTACCCGCACCCGTGGTCACAGGTTCAAGATCTAGAAACAGCCTCTTGTGTAAAACACAGGGGAAGACTGCGTAGGGTACACCAAAATGGTGGGACCCATTCCTGGACCTGCATATGTGGGAGCTTTAGTGCACCGAGCTGCCCTTTTTTTTTACAAATTGTTTCTACCATCAAAGAGGAAATGAGAGTTAATTGCACTACAGTTCTTTTGAGTTGTTTCATTACAAAATGAAGTTCTCTTATAGCCTATCCATAAAGCTTATGAAAATAAGTTGAATACAAATGAACATATCATTAAGTATTTAAGTAAGTTTTTCCAAGCACTTGCTCAAATGTTTATATCATAAGATAAGCCTAAATACACTCTTATAAACACCCCCTAGTAAATCATTTGCTTGTTACAATGGTCATTACCACATCAATTAGTTTCTTTATAGTTTTACGGAGCTCGGTGTTTATTGGTTGTGTTGTGGTAGGTTGAGTCTTGTAGTAAATGTAACTAGGAAGTAGGAACTGGGAAAACAACATTATGTTTTGATGACTTTAGTATTTCTTCTCTTTGGTTGACCCTCTTTTCTCACTTTCTTTTTACAGGGAAAAGTTTTCTTCTACATTTTTTTGGTTGTGGTTTATGAGATTTCATTTTTTATTTATTTATTTATTTATATCAGTATGGATATAAGCATTTAATGTTCTAGATGAAATGCTCACCAACTGCAATCATTTATCAAGATGTAGTAGGCGGTACACTTTGTTAGTTGATTCTATGTTTTTTCTTCCGCTATACAATATAACATAACAAACGTCTGTTAATTGTTGTGCAGGATGGCCATCCACCTTTGGGTTGGCATGACACTGCAGCATATCTTGTTTTACCTGTTCTTCTTATTCTTTCTCAATATGTTTCAATGGAAATCATGAAACCACCTCAGGTAAGCATGTCAGGTATCCTTCTCTTTCCTTATTATTTTACAAAGCAGACCTAACTTACTTTTTTTTTTTTACAGACAAATGATCCTACTCAAAAGAATACACTTCTTATTTTCAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTGCCATCAGGACTAACAATTTACTG

Protein sequence

>MS.gene055750.t1

MAKTLISSPSFLGTPLPSLHRNNFSPNRTRLYTKVHFSFHQIPPIQSLTHSIDVTGVFARAEGLLYTLADAAVTADAVTSTSTSTDVAVQKNGGCLVFISDAMEFVLKILKDGLSAVHVPYSYGFAIILLTLIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEDGHPPLGWHDTAAYLVLPVLLILSQYVSMEIMKPPQTNDPTQKNTLLIFKFLPLMIGYFSLSVPSGLTIY