Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80471.t1 | XP_003626350.1 | 83.1 | 545 | 84 | 3 | 1 | 537 | 1 | 545 | 2.60E-256 | 894.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80471.t1 | Q5XQC7 | 65.3 | 551 | 176 | 5 | 1 | 537 | 1 | 550 | 1.5e-204 | 713.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80471.t1 | A2Q3G1 | 83.1 | 545 | 84 | 3 | 1 | 537 | 1 | 545 | 1.8e-256 | 894.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80471 | MS.gene70112 | PPI |
| MS.gene80471 | MS.gene49772 | PPI |
| MS.gene000424 | MS.gene80471 | PPI |
| MS.gene030511 | MS.gene80471 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80471.t1 | MTR_7g114130 | 83.119 | 545 | 84 | 3 | 1 | 537 | 1 | 545 | 0.0 | 927 |
| MS.gene80471.t1 | MTR_1g048160 | 81.516 | 541 | 96 | 2 | 1 | 537 | 1 | 541 | 0.0 | 913 |
| MS.gene80471.t1 | MTR_8g096190 | 57.636 | 550 | 219 | 4 | 1 | 537 | 1 | 549 | 0.0 | 640 |
| MS.gene80471.t1 | MTR_8g096190 | 57.532 | 551 | 220 | 4 | 1 | 538 | 1 | 550 | 0.0 | 640 |
| MS.gene80471.t1 | MTR_8g096190 | 56.814 | 521 | 211 | 4 | 1 | 508 | 1 | 520 | 0.0 | 594 |
| MS.gene80471.t1 | MTR_7g114100 | 69.949 | 396 | 82 | 6 | 145 | 536 | 13 | 375 | 0.0 | 535 |
| MS.gene80471.t1 | MTR_7g033100 | 33.480 | 227 | 111 | 8 | 330 | 538 | 107 | 311 | 8.42e-22 | 98.6 |
| MS.gene80471.t1 | MTR_7g033100 | 33.480 | 227 | 111 | 8 | 330 | 538 | 107 | 311 | 9.35e-22 | 97.8 |
| MS.gene80471.t1 | MTR_3g086520 | 33.921 | 227 | 110 | 9 | 330 | 538 | 125 | 329 | 1.50e-20 | 95.1 |
| MS.gene80471.t1 | MTR_3g086520 | 33.921 | 227 | 110 | 9 | 330 | 538 | 125 | 329 | 1.60e-20 | 95.1 |
| MS.gene80471.t1 | MTR_3g086520 | 33.921 | 227 | 110 | 9 | 330 | 538 | 122 | 326 | 1.63e-20 | 94.7 |
| MS.gene80471.t1 | MTR_3g075530 | 31.624 | 234 | 119 | 10 | 324 | 538 | 88 | 299 | 2.30e-19 | 91.3 |
| MS.gene80471.t1 | MTR_8g089670 | 31.718 | 227 | 115 | 8 | 330 | 538 | 132 | 336 | 1.71e-18 | 88.6 |
| MS.gene80471.t1 | MTR_8g447220 | 28.014 | 282 | 159 | 10 | 278 | 538 | 26 | 284 | 1.94e-18 | 88.2 |
| MS.gene80471.t1 | MTR_6g092020 | 29.183 | 257 | 143 | 9 | 298 | 538 | 42 | 275 | 2.88e-18 | 87.4 |
| MS.gene80471.t1 | MTR_8g447220 | 28.014 | 282 | 159 | 10 | 278 | 538 | 26 | 284 | 3.13e-18 | 86.3 |
| MS.gene80471.t1 | MTR_2g063843 | 29.911 | 224 | 120 | 7 | 330 | 538 | 87 | 288 | 4.38e-18 | 87.0 |
| MS.gene80471.t1 | MTR_2g063907 | 29.956 | 227 | 119 | 7 | 330 | 538 | 81 | 285 | 5.65e-18 | 86.7 |
| MS.gene80471.t1 | MTR_2g063857 | 29.075 | 227 | 121 | 7 | 330 | 538 | 95 | 299 | 2.77e-17 | 84.7 |
| MS.gene80471.t1 | MTR_3g096520 | 30.488 | 246 | 129 | 10 | 315 | 538 | 104 | 329 | 4.06e-17 | 84.3 |
| MS.gene80471.t1 | MTR_2g063857 | 29.075 | 227 | 121 | 7 | 330 | 538 | 95 | 299 | 4.07e-17 | 83.6 |
| MS.gene80471.t1 | MTR_3g096520 | 31.301 | 246 | 127 | 11 | 315 | 538 | 87 | 312 | 4.24e-17 | 84.3 |
| MS.gene80471.t1 | MTR_3g096520 | 31.301 | 246 | 127 | 11 | 315 | 538 | 87 | 312 | 4.37e-17 | 84.0 |
| MS.gene80471.t1 | MTR_6g092100 | 29.778 | 225 | 120 | 7 | 330 | 538 | 29 | 231 | 4.94e-17 | 82.4 |
| MS.gene80471.t1 | MTR_6g021730 | 29.778 | 225 | 122 | 7 | 330 | 538 | 127 | 331 | 1.41e-16 | 82.8 |
| MS.gene80471.t1 | MTR_7g081170 | 27.742 | 155 | 95 | 4 | 359 | 504 | 85 | 231 | 1.16e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80471.t1 | AT1G08860 | 65.336 | 551 | 176 | 5 | 1 | 537 | 1 | 550 | 0.0 | 739 |
| MS.gene80471.t1 | AT5G61910 | 59.574 | 517 | 203 | 2 | 24 | 535 | 798 | 1313 | 0.0 | 648 |
| MS.gene80471.t1 | AT5G61900 | 57.587 | 547 | 220 | 3 | 1 | 536 | 1 | 546 | 0.0 | 645 |
| MS.gene80471.t1 | AT5G61900 | 57.587 | 547 | 220 | 3 | 1 | 536 | 1 | 546 | 0.0 | 645 |
| MS.gene80471.t1 | AT5G07300 | 55.091 | 550 | 232 | 4 | 1 | 536 | 1 | 549 | 0.0 | 624 |
| MS.gene80471.t1 | AT3G01650 | 33.480 | 227 | 111 | 8 | 330 | 538 | 156 | 360 | 6.59e-21 | 96.3 |
| MS.gene80471.t1 | AT3G01650 | 33.480 | 227 | 111 | 8 | 330 | 538 | 156 | 360 | 6.59e-21 | 96.3 |
| MS.gene80471.t1 | AT1G67800 | 32.599 | 227 | 113 | 8 | 330 | 538 | 93 | 297 | 8.68e-21 | 95.5 |
| MS.gene80471.t1 | AT1G67800 | 32.599 | 227 | 113 | 8 | 330 | 538 | 93 | 297 | 8.68e-21 | 95.5 |
| MS.gene80471.t1 | AT1G67800 | 32.599 | 227 | 113 | 8 | 330 | 538 | 93 | 297 | 8.68e-21 | 95.5 |
| MS.gene80471.t1 | AT1G67800 | 32.599 | 227 | 113 | 8 | 330 | 538 | 93 | 297 | 8.68e-21 | 95.5 |
| MS.gene80471.t1 | AT1G67800 | 32.599 | 227 | 113 | 8 | 330 | 538 | 113 | 317 | 1.05e-20 | 95.5 |
| MS.gene80471.t1 | AT1G67800 | 32.599 | 227 | 113 | 8 | 330 | 538 | 113 | 317 | 1.15e-20 | 94.7 |
| MS.gene80471.t1 | AT5G14420 | 32.159 | 227 | 114 | 8 | 330 | 538 | 122 | 326 | 5.37e-20 | 93.2 |
| MS.gene80471.t1 | AT5G14420 | 32.159 | 227 | 114 | 8 | 330 | 538 | 122 | 326 | 5.37e-20 | 93.2 |
| MS.gene80471.t1 | AT5G14420 | 32.159 | 227 | 114 | 8 | 330 | 538 | 122 | 326 | 5.37e-20 | 93.2 |
| MS.gene80471.t1 | AT5G14420 | 32.159 | 227 | 114 | 8 | 330 | 538 | 122 | 326 | 5.37e-20 | 93.2 |
| MS.gene80471.t1 | AT5G63970 | 30.317 | 221 | 121 | 7 | 315 | 513 | 16 | 225 | 4.82e-18 | 86.3 |
| MS.gene80471.t1 | AT5G63970 | 30.317 | 221 | 121 | 7 | 315 | 513 | 16 | 225 | 4.82e-18 | 86.3 |
| MS.gene80471.t1 | AT1G79380 | 29.268 | 246 | 132 | 9 | 315 | 538 | 58 | 283 | 1.19e-17 | 85.5 |
Find 116 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTAACCACAGCATTTA+TGG | 0.114808 | 6.3:+37925207 | None:intergenic |
| CTATATGGACCCACATTATT+TGG | 0.120245 | 6.3:-37925511 | MS.gene80471:CDS |
| AGACAAAGTGGTCTCCATTT+TGG | 0.193575 | 6.3:+37927228 | None:intergenic |
| TTACGAAGTGTGAGTCTATA+TGG | 0.268277 | 6.3:-37925526 | MS.gene80471:CDS |
| TAATAAAATGTTTCCTGCTT+GGG | 0.269847 | 6.3:-37925829 | MS.gene80471:CDS |
| TTTGCAGCCATGTTCATTAC+AGG | 0.304763 | 6.3:+37925487 | None:intergenic |
| TTCTCACCTCAGAGTTGATT+GGG | 0.321477 | 6.3:+37925748 | None:intergenic |
| TGGATTCGAACTAAATTTCA+TGG | 0.331679 | 6.3:-37926502 | MS.gene80471:CDS |
| CCCTTATCGATTCTTATAGT+TGG | 0.331752 | 6.3:-37925175 | MS.gene80471:CDS |
| ATTGCATATGCCACAATCAT+AGG | 0.336592 | 6.3:+37928290 | None:intergenic |
| CTTACTATGCACTTCTTTCA+TGG | 0.340719 | 6.3:+37924856 | None:intergenic |
| ACAACAATTTAAATCCAAAA+TGG | 0.352815 | 6.3:-37927242 | MS.gene80471:CDS |
| GATGGAAAATTGGAAGAATT+AGG | 0.355883 | 6.3:-37928260 | MS.gene80471:CDS |
| CATTCTGGATTCAAAGAATT+CGG | 0.362170 | 6.3:+37928221 | None:intergenic |
| TTGACCAGCCACCTCTTGTT+TGG | 0.365121 | 6.3:+37928678 | None:intergenic |
| TTTCTCACCTCAGAGTTGAT+TGG | 0.367981 | 6.3:+37925747 | None:intergenic |
| TTGCATTACATCGATTTATC+TGG | 0.374898 | 6.3:-37926342 | MS.gene80471:CDS |
| AATGAAAGGAGATGGAAAAT+TGG | 0.379656 | 6.3:-37928270 | MS.gene80471:CDS |
| ATAACTTCAGTCTTTGAAAT+CGG | 0.383335 | 6.3:+37927267 | None:intergenic |
| GCTTAACCTTGACGGTTAGA+AGG | 0.385288 | 6.3:-37927556 | MS.gene80471:CDS |
| CCCATAGGACGGCGTTGTTA+CGG | 0.386213 | 6.3:-37925242 | MS.gene80471:intron |
| AGCATGTAATTTACTTGATC+GGG | 0.388048 | 6.3:-37928425 | MS.gene80471:CDS |
| AAAATTTATGTAGGCTATCA+TGG | 0.398003 | 6.3:-37925883 | MS.gene80471:intron |
| AATTTGCGCCATTTCTCTCT+TGG | 0.401290 | 6.3:+37926707 | None:intergenic |
| GATGGCATCGTTGTTCTTCT+CGG | 0.402929 | 6.3:+37928648 | None:intergenic |
| AATGGCAAACATGTACTTAT+CGG | 0.403352 | 6.3:-37926886 | MS.gene80471:CDS |
| TGTAGGAGTTGAAGGCATAA+TGG | 0.403444 | 6.3:-37925566 | MS.gene80471:CDS |
| TTCTTCGTTATAGGTTCTAA+AGG | 0.405469 | 6.3:-37926589 | MS.gene80471:intron |
| CTAATAAAATGTTTCCTGCT+TGG | 0.407672 | 6.3:-37925830 | MS.gene80471:CDS |
| GGTTAAGCTCCGGCTTGGTT+TGG | 0.413516 | 6.3:+37927571 | None:intergenic |
| TGTCTTAATTTGCAGCAGTT+TGG | 0.415305 | 6.3:-37927210 | MS.gene80471:CDS |
| TCGATGTAATGCAAAGAATC+TGG | 0.423247 | 6.3:+37926351 | None:intergenic |
| TGTGGATCATTATTGTGAAA+AGG | 0.427709 | 6.3:-37926556 | MS.gene80471:CDS |
| CTATGTATTACTTATCATTA+CGG | 0.432076 | 6.3:-37925422 | MS.gene80471:intron |
| ACCAACTATAAGAATCGATA+AGG | 0.436043 | 6.3:+37925174 | None:intergenic |
| TATCTTTCGTTGTTCTCGCT+TGG | 0.436588 | 6.3:-37927456 | MS.gene80471:CDS |
| CAGGTATTGGATGCTGATAA+TGG | 0.440119 | 6.3:-37924938 | MS.gene80471:CDS |
| CAGCATGTAATTTACTTGAT+CGG | 0.441863 | 6.3:-37928426 | MS.gene80471:CDS |
| TTACTATGCACTTCTTTCAT+GGG | 0.442233 | 6.3:+37924857 | None:intergenic |
| TCTTCGTTATAGGTTCTAAA+GGG | 0.443242 | 6.3:-37926588 | MS.gene80471:intron |
| AATAAAATGTTTCCTGCTTG+GGG | 0.447902 | 6.3:-37925828 | MS.gene80471:CDS |
| ATTATATGTCCAGCTTCAAA+TGG | 0.448349 | 6.3:-37926387 | MS.gene80471:intron |
| ATTCTTGAAATCCTTAGAAA+AGG | 0.452674 | 6.3:+37927312 | None:intergenic |
| TCTAAAGGGTCAACTATTTG+TGG | 0.454038 | 6.3:-37926574 | MS.gene80471:CDS |
| TTCTCTTGTCCGTGTGCCAA+TGG | 0.467402 | 6.3:+37926676 | None:intergenic |
| TCGATTCTTATAGTTGGTGT+TGG | 0.472872 | 6.3:-37925169 | MS.gene80471:CDS |
| CGAATTCTTTGAATCCAGAA+TGG | 0.475874 | 6.3:-37928220 | MS.gene80471:CDS |
| AACAGTCTCCTCAGCATGAA+TGG | 0.478948 | 6.3:+37927502 | None:intergenic |
| ATGGTTGCGGTAGATTTCAC+TGG | 0.480284 | 6.3:-37926483 | MS.gene80471:intron |
| CTGAGTGATCAAGACTTCCT+AGG | 0.482617 | 6.3:-37927738 | MS.gene80471:CDS |
| CGCCTCGTAAAAGAAATTGA+TGG | 0.482801 | 6.3:+37928630 | None:intergenic |
| CGAACTAAATTTCATGGTTG+CGG | 0.485552 | 6.3:-37926496 | MS.gene80471:CDS |
| GTGTAGGTTGTAGGAGTTGA+AGG | 0.486099 | 6.3:-37925574 | MS.gene80471:intron |
| TCGGTTAAATTCATACCAAA+AGG | 0.492733 | 6.3:-37926319 | MS.gene80471:intron |
| TGCTTTGATTTCAATAGCAA+TGG | 0.495572 | 6.3:-37926904 | MS.gene80471:CDS |
| GACATTGACACAAGATATCA+TGG | 0.496552 | 6.3:-37927954 | MS.gene80471:CDS |
| AAGCTATACCAAGAGAGAAA+TGG | 0.498603 | 6.3:-37926715 | MS.gene80471:CDS |
| TGATCGGGACATTGCGTCGA+AGG | 0.510329 | 6.3:-37928410 | MS.gene80471:intron |
| GTCAAGGTTAAGCTCCGGCT+TGG | 0.510784 | 6.3:+37927566 | None:intergenic |
| AAGCCGGAGCTTAACCTTGA+CGG | 0.512192 | 6.3:-37927564 | MS.gene80471:CDS |
| ATGGCAAACATGTACTTATC+GGG | 0.518005 | 6.3:-37926885 | MS.gene80471:intron |
| AAATGTTTACAAACCTTGGT+GGG | 0.518875 | 6.3:+37927927 | None:intergenic |
| ATTTCAAGAATGGTGGAGAG+TGG | 0.524579 | 6.3:-37927300 | MS.gene80471:CDS |
| CATTACAGGTCCAAATAATG+TGG | 0.528168 | 6.3:+37925501 | None:intergenic |
| TCTTGCTTTAGTGATTTGAA+TGG | 0.529244 | 6.3:-37928703 | MS.gene80471:CDS |
| AAAATGTTTACAAACCTTGG+TGG | 0.535594 | 6.3:+37927926 | None:intergenic |
| AAGTGCAACTTGCCTCTCCT+AGG | 0.543366 | 6.3:+37927721 | None:intergenic |
| CCAACTATAAGAATCGATAA+GGG | 0.543759 | 6.3:+37925175 | None:intergenic |
| CGTCGCTTAAGAAGTTCTAC+TGG | 0.546983 | 6.3:-37924914 | MS.gene80471:CDS |
| AGTGCTGTTATATGATGAAA+CGG | 0.551687 | 6.3:+37925450 | None:intergenic |
| AAACGCTGATTTCAAGAGCA+TGG | 0.551958 | 6.3:-37925146 | MS.gene80471:CDS |
| TTTATTGACTACATATCTAG+TGG | 0.553134 | 6.3:-37926522 | MS.gene80471:CDS |
| TGCAAAGAATCTGGCTTGTG+AGG | 0.553928 | 6.3:+37926360 | None:intergenic |
| TCTAAGGATTTCAAGAATGG+TGG | 0.554221 | 6.3:-37927307 | MS.gene80471:CDS |
| TGCTGCAAATTAAGACAAAG+TGG | 0.555841 | 6.3:+37927216 | None:intergenic |
| ATGTAGGCTATCATGGAGGT+TGG | 0.561867 | 6.3:-37925876 | MS.gene80471:intron |
| TAACCGTCAAGGTTAAGCTC+CGG | 0.564476 | 6.3:+37927561 | None:intergenic |
| TACTATGCACTTCTTTCATG+GGG | 0.565387 | 6.3:+37924858 | None:intergenic |
| TCAGAGTGATCCTATGATTG+TGG | 0.565783 | 6.3:-37928300 | MS.gene80471:intron |
| GACTGTTGCGGCAAGGAGTG+CGG | 0.566725 | 6.3:-37927486 | MS.gene80471:CDS |
| GCGATTGTGCACGCAAGTTG+AGG | 0.567202 | 6.3:-37928596 | MS.gene80471:intron |
| TTGACGGTTAGAAGGAAAAG+AGG | 0.571744 | 6.3:-37927548 | MS.gene80471:CDS |
| TAGGCTATCATGGAGGTTGG+AGG | 0.578214 | 6.3:-37925873 | MS.gene80471:CDS |
| GGAGCCAAACAAGAGGTGGC+TGG | 0.584629 | 6.3:-37928682 | MS.gene80471:CDS |
| GCATATGCAATGAAAGGAGA+TGG | 0.584810 | 6.3:-37928278 | MS.gene80471:CDS |
| TTTGTCATGCCATTGGCACA+CGG | 0.585954 | 6.3:-37926685 | MS.gene80471:CDS |
| TCAAAGCACTCAATAAGTAG+TGG | 0.586229 | 6.3:+37926919 | None:intergenic |
| ATTGGCACACGGACAAGAGA+AGG | 0.588157 | 6.3:-37926674 | MS.gene80471:intron |
| AAAGAGGGAATAGAAACGAT+GGG | 0.591292 | 6.3:-37927532 | MS.gene80471:CDS |
| TTTGGAGGAAAGTTACCTGC+GGG | 0.593775 | 6.3:-37925804 | MS.gene80471:CDS |
| ATTACATCGATTTATCTGGT+CGG | 0.601030 | 6.3:-37926338 | MS.gene80471:CDS |
| GGCAATTACCATTCATGCTG+AGG | 0.602088 | 6.3:-37927510 | MS.gene80471:CDS |
| ATAAAATGTTTCCTGCTTGG+GGG | 0.603588 | 6.3:-37925827 | MS.gene80471:CDS |
| TCTCGCTTGGATAACAAAGA+CGG | 0.608320 | 6.3:-37927443 | MS.gene80471:CDS |
| TCAAGAATGGTGGAGAGTGG+AGG | 0.609481 | 6.3:-37927297 | MS.gene80471:CDS |
| GGCAAGTTGCACTTTATCAG+AGG | 0.610347 | 6.3:-37927712 | MS.gene80471:intron |
| CTGAGGAGACTGTTGCGGCA+AGG | 0.611959 | 6.3:-37927493 | MS.gene80471:CDS |
| TCAAGAAACCATAAATGCTG+TGG | 0.616964 | 6.3:-37925215 | MS.gene80471:CDS |
| GAAGCAATAGCTTACACAAG+TGG | 0.619505 | 6.3:+37928155 | None:intergenic |
| AGATAGTGACCAAACCAAGC+CGG | 0.622761 | 6.3:-37927580 | MS.gene80471:CDS |
| GAATGGAGCCAAACAAGAGG+TGG | 0.626205 | 6.3:-37928686 | MS.gene80471:CDS |
| AAAAGAGGGAATAGAAACGA+TGG | 0.628984 | 6.3:-37927533 | MS.gene80471:CDS |
| TCATGCTGAGGAGACTGTTG+CGG | 0.635107 | 6.3:-37927498 | MS.gene80471:CDS |
| ATTACAGGTCCAAATAATGT+GGG | 0.639830 | 6.3:+37925502 | None:intergenic |
| CAATGAGATACGTTACCCGC+AGG | 0.641741 | 6.3:+37925789 | None:intergenic |
| ATTGTGGCATATGCAATGAA+AGG | 0.656157 | 6.3:-37928284 | MS.gene80471:CDS |
| ATATCATGGTGTTCCCACCA+AGG | 0.656561 | 6.3:-37927940 | MS.gene80471:intron |
| TGATCAAGACTTCCTAGGAG+AGG | 0.663008 | 6.3:-37927733 | MS.gene80471:CDS |
| TTTGAATGGAGCCAAACAAG+AGG | 0.663232 | 6.3:-37928689 | MS.gene80471:CDS |
| TGACGGTTAGAAGGAAAAGA+GGG | 0.665772 | 6.3:-37927547 | MS.gene80471:CDS |
| ATTTGGACCTGTAATGAACA+TGG | 0.666765 | 6.3:-37925494 | MS.gene80471:CDS |
| TGGGAGCCCAATCAACTCTG+AGG | 0.696472 | 6.3:-37925754 | MS.gene80471:intron |
| GTTTGGAGGAAAGTTACCTG+CGG | 0.698546 | 6.3:-37925805 | MS.gene80471:CDS |
| CGCTGATTTCAAGAGCATGG+AGG | 0.715202 | 6.3:-37925143 | MS.gene80471:intron |
| AAGAGGGAATAGAAACGATG+GGG | 0.727845 | 6.3:-37927531 | MS.gene80471:CDS |
| ATTTATGTAGGCTATCATGG+AGG | 0.738507 | 6.3:-37925880 | MS.gene80471:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr6.3:37925532-37925513 | None:intergenic | 0.0% |
| !! | TAATAAAATTTCTTCGTTAT+AGG | - | chr6.3:37926961-37926980 | MS.gene80471:intron | 15.0% |
| !! | TATTGAATAATTAATGTATC+TGG | + | chr6.3:37927895-37927914 | None:intergenic | 15.0% |
| !!! | ATTGATTGGTTATTTTTAAT+TGG | + | chr6.3:37928281-37928300 | None:intergenic | 15.0% |
| !!! | TAAGCAAATATTATTTTTTC+AGG | + | chr6.3:37927920-37927939 | None:intergenic | 15.0% |
| !!! | TTCTATTTTGAATAACATTA+GGG | - | chr6.3:37927619-37927638 | MS.gene80471:intron | 15.0% |
| !!! | TTTCTATTTTGAATAACATT+AGG | - | chr6.3:37927618-37927637 | MS.gene80471:intron | 15.0% |
| !! | AAAATCGATGTACAAAAATT+TGG | + | chr6.3:37927294-37927313 | None:intergenic | 20.0% |
| !! | ACAACAATTTAAATCCAAAA+TGG | - | chr6.3:37926317-37926336 | MS.gene80471:intron | 20.0% |
| !! | CAAACCAAGATTATAAAATA+AGG | + | chr6.3:37925031-37925050 | None:intergenic | 20.0% |
| !! | CAATCAATTATAATCATTGA+CGG | + | chr6.3:37928224-37928243 | None:intergenic | 20.0% |
| !! | CTATGTATTACTTATCATTA+CGG | - | chr6.3:37928137-37928156 | MS.gene80471:intron | 20.0% |
| !!! | ATAAATTGTTCTATTGACTA+AGG | - | chr6.3:37927104-37927123 | MS.gene80471:intron | 20.0% |
| !!! | GAAATGCTTTATGTTTTTTT+AGG | - | chr6.3:37927831-37927850 | MS.gene80471:intron | 20.0% |
| !!! | GTTTCCTTATTTTATAATCT+TGG | - | chr6.3:37925024-37925043 | MS.gene80471:intron | 20.0% |
| !!! | TAAATTTTAGTATGTGGATT+AGG | + | chr6.3:37927664-37927683 | None:intergenic | 20.0% |
| !!! | TAGATTTGTTTTAGTTAGTT+AGG | + | chr6.3:37927521-37927540 | None:intergenic | 20.0% |
| !!! | TATTTTTTTTTCTTGTGTGT+AGG | - | chr6.3:37927969-37927988 | MS.gene80471:CDS | 20.0% |
| !!! | TCTCTATGATAATTTTAGAA+AGG | - | chr6.3:37925710-37925729 | MS.gene80471:intron | 20.0% |
| ! | AAAATTTATGTAGGCTATCA+TGG | - | chr6.3:37927676-37927695 | MS.gene80471:intron | 25.0% |
| ! | ACAAACTATAGCTCAAAAAT+AGG | - | chr6.3:37927475-37927494 | MS.gene80471:CDS | 25.0% |
| ! | ACCTGAAAGAAAACAAAATA+AGG | + | chr6.3:37925574-37925593 | None:intergenic | 25.0% |
| ! | AGGTTTATTATTACAGGTAT+TGG | - | chr6.3:37928608-37928627 | MS.gene80471:CDS | 25.0% |
| ! | ATATATCATAATTCACTCTC+CGG | + | chr6.3:37927952-37927971 | None:intergenic | 25.0% |
| ! | ATATGCATTCTCATATGTAT+AGG | + | chr6.3:37925182-37925201 | None:intergenic | 25.0% |
| ! | ATCAATGAACAAAATTTGCA+GGG | + | chr6.3:37926922-37926941 | None:intergenic | 25.0% |
| ! | ATCGGGTAATGTAATATTAA+TGG | - | chr6.3:37926691-37926710 | MS.gene80471:CDS | 25.0% |
| ! | ATGTAACATTATATTCGTTC+AGG | + | chr6.3:37926562-37926581 | None:intergenic | 25.0% |
| ! | ATTCTTGAAATCCTTAGAAA+AGG | + | chr6.3:37926250-37926269 | None:intergenic | 25.0% |
| ! | CAAAAAATGTTTACAAACCT+TGG | + | chr6.3:37925639-37925658 | None:intergenic | 25.0% |
| ! | CCACATACTAAAATTTATGT+AGG | - | chr6.3:37927667-37927686 | MS.gene80471:intron | 25.0% |
| ! | CCTGAAAGAAAACAAAATAA+GGG | + | chr6.3:37925573-37925592 | None:intergenic | 25.0% |
| ! | CTTGTATTAGATTATTCACA+AGG | - | chr6.3:37927393-37927412 | MS.gene80471:intron | 25.0% |
| ! | GTACTAAGGTTTATTATTAC+AGG | - | chr6.3:37928602-37928621 | MS.gene80471:CDS | 25.0% |
| ! | TAATAAAATGTTTCCTGCTT+GGG | - | chr6.3:37927730-37927749 | MS.gene80471:CDS | 25.0% |
| ! | TACAACTTAAGATGTATTCA+TGG | - | chr6.3:37924986-37925005 | MS.gene80471:intron | 25.0% |
| ! | TATTTGCTTATATATGAGAC+CGG | - | chr6.3:37927930-37927949 | MS.gene80471:intron | 25.0% |
| !! | TTTATTGACTACATATCTAG+TGG | - | chr6.3:37927037-37927056 | MS.gene80471:intron | 25.0% |
| !!! | ATAACTTCAGTCTTTGAAAT+CGG | + | chr6.3:37926295-37926314 | None:intergenic | 25.0% |
| !!! | CCTACATAAATTTTAGTATG+TGG | + | chr6.3:37927670-37927689 | None:intergenic | 25.0% |
| !!! | CGATTTTTCAAGATTTTGTT+GGG | - | chr6.3:37927307-37927326 | MS.gene80471:CDS | 25.0% |
| !!! | CTAATTTTTTCTATCCATTC+TGG | + | chr6.3:37925356-37925375 | None:intergenic | 25.0% |
| !!! | CTCATTGTTTTAATCTGAAT+GGG | - | chr6.3:37927786-37927805 | MS.gene80471:intron | 25.0% |
| !!! | GATTTTTCAAGATTTTGTTG+GGG | - | chr6.3:37927308-37927327 | MS.gene80471:CDS | 25.0% |
| !!! | TCGATTTTTCAAGATTTTGT+TGG | - | chr6.3:37927306-37927325 | MS.gene80471:CDS | 25.0% |
| !!! | TCTCATTGTTTTAATCTGAA+TGG | - | chr6.3:37927785-37927804 | MS.gene80471:intron | 25.0% |
| !!! | TTATTTTTAATTGGTATGCG+CGG | + | chr6.3:37928272-37928291 | None:intergenic | 25.0% |
| !!! | TTTAGAAAGGTGTAATTTTG+TGG | - | chr6.3:37925723-37925742 | MS.gene80471:intron | 25.0% |
| !!! | TTTTCTAAGGATTTCAAGAA+TGG | - | chr6.3:37926249-37926268 | MS.gene80471:intron | 25.0% |
| AAAATGTTTACAAACCTTGG+TGG | + | chr6.3:37925636-37925655 | None:intergenic | 30.0% | |
| AAATGTTTACAAACCTTGGT+GGG | + | chr6.3:37925635-37925654 | None:intergenic | 30.0% | |
| AATAAAATGTTTCCTGCTTG+GGG | - | chr6.3:37927731-37927750 | MS.gene80471:CDS | 30.0% | |
| AATGAAAGGAGATGGAAAAT+TGG | - | chr6.3:37925289-37925308 | MS.gene80471:intron | 30.0% | |
| AATGGCAAACATGTACTTAT+CGG | - | chr6.3:37926673-37926692 | MS.gene80471:intron | 30.0% | |
| ACCAACTATAAGAATCGATA+AGG | + | chr6.3:37928388-37928407 | None:intergenic | 30.0% | |
| AGAACAAAAGGCGAAAAAAT+AGG | + | chr6.3:37925058-37925077 | None:intergenic | 30.0% | |
| AGCATGTAATTTACTTGATC+GGG | - | chr6.3:37925134-37925153 | MS.gene80471:intron | 30.0% | |
| ATCCAATTCGTTAGAACAAA+AGG | + | chr6.3:37925070-37925089 | None:intergenic | 30.0% | |
| ATTACAGGTCCAAATAATGT+GGG | + | chr6.3:37928060-37928079 | None:intergenic | 30.0% | |
| ATTATATGTCCAGCTTCAAA+TGG | - | chr6.3:37927172-37927191 | MS.gene80471:intron | 30.0% | |
| CAAATAACGACCATATATGT+TGG | + | chr6.3:37926176-37926195 | None:intergenic | 30.0% | |
| CAGCATGTAATTTACTTGAT+CGG | - | chr6.3:37925133-37925152 | MS.gene80471:intron | 30.0% | |
| CATTCTGGATTCAAAGAATT+CGG | + | chr6.3:37925341-37925360 | None:intergenic | 30.0% | |
| CCAACTATAAGAATCGATAA+GGG | + | chr6.3:37928387-37928406 | None:intergenic | 30.0% | |
| CTAATAAAATGTTTCCTGCT+TGG | - | chr6.3:37927729-37927748 | MS.gene80471:CDS | 30.0% | |
| GAAGATCATGAACAATTGAT+TGG | + | chr6.3:37928295-37928314 | None:intergenic | 30.0% | |
| GAGAAATGTTCTTAGTACTA+AGG | - | chr6.3:37928588-37928607 | MS.gene80471:intron | 30.0% | |
| GATCAATGAACAAAATTTGC+AGG | + | chr6.3:37926923-37926942 | None:intergenic | 30.0% | |
| GATGGAAAATTGGAAGAATT+AGG | - | chr6.3:37925299-37925318 | MS.gene80471:intron | 30.0% | |
| GATTATAGACTTTGTGACTT+TGG | - | chr6.3:37925924-37925943 | MS.gene80471:intron | 30.0% | |
| TCGGTTAAATTCATACCAAA+AGG | - | chr6.3:37927240-37927259 | MS.gene80471:CDS | 30.0% | |
| TCTTGCTTTAGTGATTTGAA+TGG | - | chr6.3:37924856-37924875 | MS.gene80471:CDS | 30.0% | |
| TGCAACAGAAAAAGAAACTT+AGG | + | chr6.3:37928458-37928477 | None:intergenic | 30.0% | |
| TGGATTCGAACTAAATTTCA+TGG | - | chr6.3:37927057-37927076 | MS.gene80471:intron | 30.0% | |
| TGTAAAGCCTAAAGAAGTTT+AGG | + | chr6.3:37926730-37926749 | None:intergenic | 30.0% | |
| TGTGGATCATTATTGTGAAA+AGG | - | chr6.3:37927003-37927022 | MS.gene80471:intron | 30.0% | |
| TGTTACGTAATGACTTGAAA+CGG | - | chr6.3:37925201-37925220 | MS.gene80471:CDS | 30.0% | |
| TGTTTAGCCTAAACTTCTTT+AGG | - | chr6.3:37926720-37926739 | MS.gene80471:CDS | 30.0% | |
| TTAAATTTCTTTCACCATGC+AGG | - | chr6.3:37926612-37926631 | MS.gene80471:intron | 30.0% | |
| TTACTATGCACTTCTTTCAT+GGG | + | chr6.3:37928705-37928724 | None:intergenic | 30.0% | |
| TTTCCTTTCAAGAATTTAGC+AGG | + | chr6.3:37925749-37925768 | None:intergenic | 30.0% | |
| ! | AGTGCTGTTATATGATGAAA+CGG | + | chr6.3:37928112-37928131 | None:intergenic | 30.0% |
| ! | TGCTTTGATTTCAATAGCAA+TGG | - | chr6.3:37926655-37926674 | MS.gene80471:intron | 30.0% |
| ! | TTCTTCGTTATAGGTTCTAA+AGG | - | chr6.3:37926970-37926989 | MS.gene80471:intron | 30.0% |
| !! | ATTACATCGATTTATCTGGT+CGG | - | chr6.3:37927221-37927240 | MS.gene80471:CDS | 30.0% |
| !! | TCTTCGTTATAGGTTCTAAA+GGG | - | chr6.3:37926971-37926990 | MS.gene80471:intron | 30.0% |
| !! | TTGCATTACATCGATTTATC+TGG | - | chr6.3:37927217-37927236 | MS.gene80471:CDS | 30.0% |
| !!! | CCCTTATTTTGTTTTCTTTC+AGG | - | chr6.3:37925570-37925589 | MS.gene80471:CDS | 30.0% |
| !!! | GTCATCTTGTTTTTTCTTGT+AGG | - | chr6.3:37926222-37926241 | MS.gene80471:intron | 30.0% |
| AAAAGAGGGAATAGAAACGA+TGG | - | chr6.3:37926026-37926045 | MS.gene80471:intron | 35.0% | |
| AAACATGTTGTGCACAAAGA+TGG | + | chr6.3:37926391-37926410 | None:intergenic | 35.0% | |
| AAAGAGGGAATAGAAACGAT+GGG | - | chr6.3:37926027-37926046 | MS.gene80471:intron | 35.0% | |
| AAGCTATACCAAGAGAGAAA+TGG | - | chr6.3:37926844-37926863 | MS.gene80471:intron | 35.0% | |
| AATGAACATGGCTGCAAAAA+TGG | - | chr6.3:37928077-37928096 | MS.gene80471:intron | 35.0% | |
| ATAAAATGTTTCCTGCTTGG+GGG | - | chr6.3:37927732-37927751 | MS.gene80471:CDS | 35.0% | |
| ATACCTAGCTCCAACATATA+TGG | - | chr6.3:37926163-37926182 | MS.gene80471:intron | 35.0% | |
| ATGGCAAACATGTACTTATC+GGG | - | chr6.3:37926674-37926693 | MS.gene80471:intron | 35.0% | |
| ATTGCATATGCCACAATCAT+AGG | + | chr6.3:37925272-37925291 | None:intergenic | 35.0% | |
| ATTGTGGCATATGCAATGAA+AGG | - | chr6.3:37925275-37925294 | MS.gene80471:intron | 35.0% | |
| ATTTATGTAGGCTATCATGG+AGG | - | chr6.3:37927679-37927698 | MS.gene80471:intron | 35.0% | |
| ATTTGGACCTGTAATGAACA+TGG | - | chr6.3:37928065-37928084 | MS.gene80471:intron | 35.0% | |
| CAGAAAAAGAAACTTAGGCA+AGG | + | chr6.3:37928453-37928472 | None:intergenic | 35.0% | |
| CATTACAGGTCCAAATAATG+TGG | + | chr6.3:37928061-37928080 | None:intergenic | 35.0% | |
| CGAACTAAATTTCATGGTTG+CGG | - | chr6.3:37927063-37927082 | MS.gene80471:intron | 35.0% | |
| CGAATTCTTTGAATCCAGAA+TGG | - | chr6.3:37925339-37925358 | MS.gene80471:intron | 35.0% | |
| CTAAGAACATTTCTCGAATC+AGG | + | chr6.3:37928583-37928602 | None:intergenic | 35.0% | |
| CTATATGGACCCACATTATT+TGG | - | chr6.3:37928048-37928067 | MS.gene80471:intron | 35.0% | |
| CTTACTATGCACTTCTTTCA+TGG | + | chr6.3:37928706-37928725 | None:intergenic | 35.0% | |
| GACATTGACACAAGATATCA+TGG | - | chr6.3:37925605-37925624 | MS.gene80471:intron | 35.0% | |
| GATGCACAATAGTAACATCA+AGG | - | chr6.3:37926775-37926794 | MS.gene80471:intron | 35.0% | |
| GTAAGCTTGATACTTGTCAA+TGG | - | chr6.3:37927262-37927281 | MS.gene80471:CDS | 35.0% | |
| TACTATGCACTTCTTTCATG+GGG | + | chr6.3:37928704-37928723 | None:intergenic | 35.0% | |
| TCAAGAAACCATAAATGCTG+TGG | - | chr6.3:37928344-37928363 | MS.gene80471:intron | 35.0% | |
| TCGATGTAATGCAAAGAATC+TGG | + | chr6.3:37927211-37927230 | None:intergenic | 35.0% | |
| TCTAAAGGGTCAACTATTTG+TGG | - | chr6.3:37926985-37927004 | MS.gene80471:intron | 35.0% | |
| TCTAAGGATTTCAAGAATGG+TGG | - | chr6.3:37926252-37926271 | MS.gene80471:intron | 35.0% | |
| TCTCATGTTTGTGTGTACTA+TGG | - | chr6.3:37925951-37925970 | MS.gene80471:intron | 35.0% | |
| TGATTCAAACAGTACTTGCA+GGG | + | chr6.3:37925683-37925702 | None:intergenic | 35.0% | |
| TGCTGCAAATTAAGACAAAG+TGG | + | chr6.3:37926346-37926365 | None:intergenic | 35.0% | |
| TGCTTTAACCACAGCATTTA+TGG | + | chr6.3:37928355-37928374 | None:intergenic | 35.0% | |
| TTACGAAGTGTGAGTCTATA+TGG | - | chr6.3:37928033-37928052 | MS.gene80471:intron | 35.0% | |
| TTCCTAGTGGAAACAATTCT+TGG | + | chr6.3:37926524-37926543 | None:intergenic | 35.0% | |
| TTGATTCAAACAGTACTTGC+AGG | + | chr6.3:37925684-37925703 | None:intergenic | 35.0% | |
| ! | CAAGTATCAAGCTTACCTTT+TGG | + | chr6.3:37927258-37927277 | None:intergenic | 35.0% |
| ! | TCAAAGCACTCAATAAGTAG+TGG | + | chr6.3:37926643-37926662 | None:intergenic | 35.0% |
| ! | TCGATTCTTATAGTTGGTGT+TGG | - | chr6.3:37928390-37928409 | MS.gene80471:intron | 35.0% |
| ! | TCTCTTGGTATAGCTTTTCA+AGG | + | chr6.3:37926840-37926859 | None:intergenic | 35.0% |
| ! | TCTTGTAGGATCCTTTTCTA+AGG | - | chr6.3:37926236-37926255 | MS.gene80471:intron | 35.0% |
| ! | TGCCATCAATTTCTTTTACG+AGG | - | chr6.3:37924927-37924946 | MS.gene80471:CDS | 35.0% |
| ! | TTTTCTTGTGTGTAGGTTGT+AGG | - | chr6.3:37927976-37927995 | MS.gene80471:intron | 35.0% |
| !! | CCCTTATCGATTCTTATAGT+TGG | - | chr6.3:37928384-37928403 | MS.gene80471:intron | 35.0% |
| !! | TGTCTTAATTTGCAGCAGTT+TGG | - | chr6.3:37926349-37926368 | MS.gene80471:CDS | 35.0% |
| !! | TTCATGGTATCTTTAGAGCT+TGG | - | chr6.3:37925002-37925021 | MS.gene80471:intron | 35.0% |
| AAGAGGGAATAGAAACGATG+GGG | - | chr6.3:37926028-37926047 | MS.gene80471:intron | 40.0% | |
| AATTTGCGCCATTTCTCTCT+TGG | + | chr6.3:37926855-37926874 | None:intergenic | 40.0% | |
| ATGATCTTCTTCCCATAGGA+CGG | - | chr6.3:37928306-37928325 | MS.gene80471:intron | 40.0% | |
| CGCCTCGTAAAAGAAATTGA+TGG | + | chr6.3:37924932-37924951 | None:intergenic | 40.0% | |
| GAAGCAATAGCTTACACAAG+TGG | + | chr6.3:37925407-37925426 | None:intergenic | 40.0% | |
| GCATATGCAATGAAAGGAGA+TGG | - | chr6.3:37925281-37925300 | MS.gene80471:intron | 40.0% | |
| GCCAAAAGGTAAGTAAAGTC+TGG | - | chr6.3:37926498-37926517 | MS.gene80471:CDS | 40.0% | |
| GGAAAATGGCCCTAATAATC+CGG | - | chr6.3:37926469-37926488 | MS.gene80471:intron | 40.0% | |
| GTTCATGATCTTCTTCCCAT+AGG | - | chr6.3:37928302-37928321 | MS.gene80471:intron | 40.0% | |
| TATCTTTCGTTGTTCTCGCT+TGG | - | chr6.3:37926103-37926122 | MS.gene80471:intron | 40.0% | |
| TCAGAGTGATCCTATGATTG+TGG | - | chr6.3:37925259-37925278 | MS.gene80471:intron | 40.0% | |
| TCTCGCTTGGATAACAAAGA+CGG | - | chr6.3:37926116-37926135 | MS.gene80471:intron | 40.0% | |
| TGACGGTTAGAAGGAAAAGA+GGG | - | chr6.3:37926012-37926031 | MS.gene80471:intron | 40.0% | |
| TGAGCAAGTAACTGCACTAT+AGG | + | chr6.3:37927434-37927453 | None:intergenic | 40.0% | |
| TGGCCTGCTAAATTCTTGAA+AGG | - | chr6.3:37925743-37925762 | MS.gene80471:intron | 40.0% | |
| TTGACGGTTAGAAGGAAAAG+AGG | - | chr6.3:37926011-37926030 | MS.gene80471:intron | 40.0% | |
| TTTCTGTTGCACATAGACAC+TGG | - | chr6.3:37928467-37928486 | MS.gene80471:intron | 40.0% | |
| TTTGAATGGAGCCAAACAAG+AGG | - | chr6.3:37924870-37924889 | MS.gene80471:CDS | 40.0% | |
| TTTGCAGCCATGTTCATTAC+AGG | + | chr6.3:37928075-37928094 | None:intergenic | 40.0% | |
| ! | AATTTCTTTTACGAGGCGCA+TGG | - | chr6.3:37924934-37924953 | MS.gene80471:CDS | 40.0% |
| ! | AGACAAAGTGGTCTCCATTT+TGG | + | chr6.3:37926334-37926353 | None:intergenic | 40.0% |
| ! | ATTTCAAGAATGGTGGAGAG+TGG | - | chr6.3:37926259-37926278 | MS.gene80471:intron | 40.0% |
| ! | ATTTCTTTTACGAGGCGCAT+GGG | - | chr6.3:37924935-37924954 | MS.gene80471:CDS | 40.0% |
| ! | CACTCAGATTTATTGACTGC+AGG | + | chr6.3:37925808-37925827 | None:intergenic | 40.0% |
| ! | CGCAAATTTTGTCATGCCAT+TGG | - | chr6.3:37926867-37926886 | MS.gene80471:intron | 40.0% |
| ! | CGCCTTTTGTTCTAACGAAT+TGG | - | chr6.3:37925065-37925084 | MS.gene80471:intron | 40.0% |
| ! | GCCAGACTTTACTTACCTTT+TGG | + | chr6.3:37926502-37926521 | None:intergenic | 40.0% |
| ! | TCTTTTCCTTCTAACCGTCA+AGG | + | chr6.3:37926012-37926031 | None:intergenic | 40.0% |
| ! | TGTAGGAGTTGAAGGCATAA+TGG | - | chr6.3:37927993-37928012 | MS.gene80471:intron | 40.0% |
| ! | TTCTCACCTCAGAGTTGATT+GGG | + | chr6.3:37927814-37927833 | None:intergenic | 40.0% |
| ! | TTTCTCACCTCAGAGTTGAT+TGG | + | chr6.3:37927815-37927834 | None:intergenic | 40.0% |
| ! | TTTGGTTGTTGTTAACCCTC+CGG | - | chr6.3:37926438-37926457 | MS.gene80471:intron | 40.0% |
| !! | AAACGCTGATTTCAAGAGCA+TGG | - | chr6.3:37928413-37928432 | MS.gene80471:CDS | 40.0% |
| !! | AAGTAGTGGATTATCCTGCA+TGG | + | chr6.3:37926629-37926648 | None:intergenic | 40.0% |
| !! | CAGGTATTGGATGCTGATAA+TGG | - | chr6.3:37928621-37928640 | MS.gene80471:CDS | 40.0% |
| AACAGTCTCCTCAGCATGAA+TGG | + | chr6.3:37926060-37926079 | None:intergenic | 45.0% | |
| AGATAGTGACCAAACCAAGC+CGG | - | chr6.3:37925979-37925998 | MS.gene80471:intron | 45.0% | |
| ATATCATGGTGTTCCCACCA+AGG | - | chr6.3:37925619-37925638 | MS.gene80471:intron | 45.0% | |
| ATCAAGGATTGCTTGTCGAC+AGG | - | chr6.3:37926791-37926810 | MS.gene80471:intron | 45.0% | |
| ATGGTTGCGGTAGATTTCAC+TGG | - | chr6.3:37927076-37927095 | MS.gene80471:intron | 45.0% | |
| ATGTAGGCTATCATGGAGGT+TGG | - | chr6.3:37927683-37927702 | MS.gene80471:intron | 45.0% | |
| CGACCATATATGTTGGAGCT+AGG | + | chr6.3:37926169-37926188 | None:intergenic | 45.0% | |
| CGTCGCTTAAGAAGTTCTAC+TGG | - | chr6.3:37928645-37928664 | MS.gene80471:CDS | 45.0% | |
| CTGAGTGATCAAGACTTCCT+AGG | - | chr6.3:37925821-37925840 | MS.gene80471:CDS | 45.0% | |
| GATGGCATCGTTGTTCTTCT+CGG | + | chr6.3:37924914-37924933 | None:intergenic | 45.0% | |
| GCTTAACCTTGACGGTTAGA+AGG | - | chr6.3:37926003-37926022 | MS.gene80471:intron | 45.0% | |
| GGCAAGTTGCACTTTATCAG+AGG | - | chr6.3:37925847-37925866 | MS.gene80471:CDS | 45.0% | |
| GGCAATTACCATTCATGCTG+AGG | - | chr6.3:37926049-37926068 | MS.gene80471:intron | 45.0% | |
| GGCCAAGAATTGTTTCCACT+AGG | - | chr6.3:37926519-37926538 | MS.gene80471:CDS | 45.0% | |
| GTACTTGCAGGGATAACTCA+TGG | + | chr6.3:37925672-37925691 | None:intergenic | 45.0% | |
| GTGTAGGTTGTAGGAGTTGA+AGG | - | chr6.3:37927985-37928004 | MS.gene80471:intron | 45.0% | |
| GTTTGGAGGAAAGTTACCTG+CGG | - | chr6.3:37927754-37927773 | MS.gene80471:intron | 45.0% | |
| TAAACATGCCAGTGTCGTGT+CGG | - | chr6.3:37928538-37928557 | MS.gene80471:intron | 45.0% | |
| TAACCGTCAAGGTTAAGCTC+CGG | + | chr6.3:37926001-37926020 | None:intergenic | 45.0% | |
| TGATCAAGACTTCCTAGGAG+AGG | - | chr6.3:37925826-37925845 | MS.gene80471:CDS | 45.0% | |
| TTCCACTAGGAATCGAACTC+AGG | - | chr6.3:37926532-37926551 | MS.gene80471:CDS | 45.0% | |
| TTTGGAGGAAAGTTACCTGC+GGG | - | chr6.3:37927755-37927774 | MS.gene80471:intron | 45.0% | |
| TTTGTCATGCCATTGGCACA+CGG | - | chr6.3:37926874-37926893 | MS.gene80471:intron | 45.0% | |
| ! | TGAGGATCTCCATTTGAAGC+TGG | + | chr6.3:37927184-37927203 | None:intergenic | 45.0% |
| ! | TGCAAAGAATCTGGCTTGTG+AGG | + | chr6.3:37927202-37927221 | None:intergenic | 45.0% |
| !! | AAAAAAATAATAATAATATG+AGG | + | chr6.3:37926421-37926440 | None:intergenic | 5.0% |
| !! | AAAAATATTAATAAAAAAGT+TGG | + | chr6.3:37925230-37925249 | None:intergenic | 5.0% |
| !!! | TCATATTATTATTATTTTTT+TGG | - | chr6.3:37926420-37926439 | MS.gene80471:intron | 5.0% |
| AAGCCGGAGCTTAACCTTGA+CGG | - | chr6.3:37925995-37926014 | MS.gene80471:intron | 50.0% | |
| AAGTGCAACTTGCCTCTCCT+AGG | + | chr6.3:37925841-37925860 | None:intergenic | 50.0% | |
| ATGTTTCCTGCTTGGGGGTT+TGG | - | chr6.3:37927737-37927756 | MS.gene80471:CDS | 50.0% | |
| ATTGGCACACGGACAAGAGA+AGG | - | chr6.3:37926885-37926904 | MS.gene80471:intron | 50.0% | |
| CAATGAGATACGTTACCCGC+AGG | + | chr6.3:37927773-37927792 | None:intergenic | 50.0% | |
| GAATGGAGCCAAACAAGAGG+TGG | - | chr6.3:37924873-37924892 | MS.gene80471:CDS | 50.0% | |
| GACCTGAGTTCGATTCCTAG+TGG | + | chr6.3:37926537-37926556 | None:intergenic | 50.0% | |
| GGCTGCACTCCGGATTATTA+GGG | + | chr6.3:37926481-37926500 | None:intergenic | 50.0% | |
| TAATCCGGAGTGCAGCCAAA+AGG | - | chr6.3:37926484-37926503 | MS.gene80471:CDS | 50.0% | |
| TAGGCTATCATGGAGGTTGG+AGG | - | chr6.3:37927686-37927705 | MS.gene80471:intron | 50.0% | |
| TCATGCTGAGGAGACTGTTG+CGG | - | chr6.3:37926061-37926080 | MS.gene80471:intron | 50.0% | |
| TGGCTGCACTCCGGATTATT+AGG | + | chr6.3:37926482-37926501 | None:intergenic | 50.0% | |
| TGTTAACCCTCCGGTTTCGA+GGG | - | chr6.3:37926447-37926466 | MS.gene80471:intron | 50.0% | |
| TTCTCTTGTCCGTGTGCCAA+TGG | + | chr6.3:37926886-37926905 | None:intergenic | 50.0% | |
| TTGACCAGCCACCTCTTGTT+TGG | + | chr6.3:37924884-37924903 | None:intergenic | 50.0% | |
| TTGTTAACCCTCCGGTTTCG+AGG | - | chr6.3:37926446-37926465 | MS.gene80471:intron | 50.0% | |
| ! | ATTTTCCCCTCGAAACCGGA+GGG | + | chr6.3:37926456-37926475 | None:intergenic | 50.0% |
| ! | TCAAGAATGGTGGAGAGTGG+AGG | - | chr6.3:37926262-37926281 | MS.gene80471:intron | 50.0% |
| !! | CGCTGATTTCAAGAGCATGG+AGG | - | chr6.3:37928416-37928435 | MS.gene80471:CDS | 50.0% |
| !! | CTTACCTTTTGGCTGCACTC+CGG | + | chr6.3:37926491-37926510 | None:intergenic | 50.0% |
| CCCATAGGACGGCGTTGTTA+CGG | - | chr6.3:37928317-37928336 | MS.gene80471:intron | 55.0% | |
| CCGTAACAACGCCGTCCTAT+GGG | + | chr6.3:37928320-37928339 | None:intergenic | 55.0% | |
| CTCCGGTTTCGAGGGGAAAA+TGG | - | chr6.3:37926455-37926474 | MS.gene80471:intron | 55.0% | |
| GCGATTGTGCACGCAAGTTG+AGG | - | chr6.3:37924963-37924982 | MS.gene80471:intron | 55.0% | |
| GTCAAGGTTAAGCTCCGGCT+TGG | + | chr6.3:37925996-37926015 | None:intergenic | 55.0% | |
| GTTAACCCTCCGGTTTCGAG+GGG | - | chr6.3:37926448-37926467 | MS.gene80471:intron | 55.0% | |
| TCCGTAACAACGCCGTCCTA+TGG | + | chr6.3:37928321-37928340 | None:intergenic | 55.0% | |
| TGATCGGGACATTGCGTCGA+AGG | - | chr6.3:37925149-37925168 | MS.gene80471:CDS | 55.0% | |
| TGGGAGCCCAATCAACTCTG+AGG | - | chr6.3:37927805-37927824 | MS.gene80471:intron | 55.0% | |
| TTTCCTCCAAACCCCCAAGC+AGG | + | chr6.3:37927746-37927765 | None:intergenic | 55.0% | |
| TTTCCTGCTTGGGGGTTTGG+AGG | - | chr6.3:37927740-37927759 | MS.gene80471:CDS | 55.0% | |
| ! | CATTTTCCCCTCGAAACCGG+AGG | + | chr6.3:37926457-37926476 | None:intergenic | 55.0% |
| ! | TCGTGTCGGTGTCTGACACT+AGG | - | chr6.3:37928552-37928571 | MS.gene80471:intron | 55.0% |
| !! | GGCCATTTTCCCCTCGAAAC+CGG | + | chr6.3:37926460-37926479 | None:intergenic | 55.0% |
| !! | GGTTAAGCTCCGGCTTGGTT+TGG | + | chr6.3:37925991-37926010 | None:intergenic | 55.0% |
| CTGAGGAGACTGTTGCGGCA+AGG | - | chr6.3:37926066-37926085 | MS.gene80471:intron | 60.0% | |
| GACTGTTGCGGCAAGGAGTG+CGG | - | chr6.3:37926073-37926092 | MS.gene80471:intron | 60.0% | |
| GGAGCCAAACAAGAGGTGGC+TGG | - | chr6.3:37924877-37924896 | MS.gene80471:CDS | 60.0% | |
| GTCAGACACCGACACGACAC+TGG | + | chr6.3:37928549-37928568 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 37924850 | 37928731 | 37924850 | ID=MS.gene80471 |
| chr6.3 | mRNA | 37924850 | 37928731 | 37924850 | ID=MS.gene80471.t1;Parent=MS.gene80471 |
| chr6.3 | exon | 37928597 | 37928731 | 37928597 | ID=MS.gene80471.t1.exon1;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37928597 | 37928731 | 37928597 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37928411 | 37928458 | 37928411 | ID=MS.gene80471.t1.exon2;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37928411 | 37928458 | 37928411 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37928170 | 37928318 | 37928170 | ID=MS.gene80471.t1.exon3;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37928170 | 37928318 | 37928170 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37927941 | 37927989 | 37927941 | ID=MS.gene80471.t1.exon4;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37927941 | 37927989 | 37927941 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37927713 | 37927769 | 37927713 | ID=MS.gene80471.t1.exon5;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37927713 | 37927769 | 37927713 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37927430 | 37927600 | 37927430 | ID=MS.gene80471.t1.exon6;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37927430 | 37927600 | 37927430 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37927203 | 37927337 | 37927203 | ID=MS.gene80471.t1.exon7;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37927203 | 37927337 | 37927203 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37926886 | 37926947 | 37926886 | ID=MS.gene80471.t1.exon8;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37926886 | 37926947 | 37926886 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37926675 | 37926768 | 37926675 | ID=MS.gene80471.t1.exon9;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37926675 | 37926768 | 37926675 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37926484 | 37926598 | 37926484 | ID=MS.gene80471.t1.exon10;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37926484 | 37926598 | 37926484 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37926320 | 37926396 | 37926320 | ID=MS.gene80471.t1.exon11;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37926320 | 37926396 | 37926320 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37925755 | 37925892 | 37925755 | ID=MS.gene80471.t1.exon12;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37925755 | 37925892 | 37925755 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37925423 | 37925590 | 37925423 | ID=MS.gene80471.t1.exon13;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37925423 | 37925590 | 37925423 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37925144 | 37925257 | 37925144 | ID=MS.gene80471.t1.exon14;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37925144 | 37925257 | 37925144 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| chr6.3 | exon | 37924850 | 37924957 | 37924850 | ID=MS.gene80471.t1.exon15;Parent=MS.gene80471.t1 |
| chr6.3 | CDS | 37924850 | 37924957 | 37924850 | ID=cds.MS.gene80471.t1;Parent=MS.gene80471.t1 |
| Gene Sequence |
| Protein sequence |
