AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80665

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80665.t1 MTR_5g082070 100.000 289 0 0 1 289 1 289 0.0 585
MS.gene80665.t1 MTR_3g070210 93.080 289 20 0 1 289 1 289 0.0 550
MS.gene80665.t1 MTR_8g098375 87.063 286 35 1 4 289 3 286 0.0 513
MS.gene80665.t1 MTR_5g010150 84.615 286 42 1 4 289 3 286 2.14e-179 496
MS.gene80665.t1 MTR_3g070210 92.366 262 20 0 1 262 1 262 2.25e-179 495
MS.gene80665.t1 MTR_4g415300 81.034 290 53 2 1 289 1 289 6.36e-174 482
MS.gene80665.t1 MTR_3g070210 91.080 213 19 0 1 213 1 213 6.73e-143 400
MS.gene80665.t1 MTR_7g101190 73.256 258 62 2 32 283 16 272 4.84e-136 386
MS.gene80665.t1 MTR_2g094270 69.318 264 73 2 32 288 17 279 3.27e-134 381
MS.gene80665.t1 MTR_3g118010 71.984 257 71 1 32 288 14 269 8.38e-133 377
MS.gene80665.t1 MTR_8g098375 80.349 229 41 2 4 230 3 229 2.38e-132 375
MS.gene80665.t1 MTR_4g059390 68.382 272 79 3 23 288 7 277 6.54e-131 373
MS.gene80665.t1 MTR_5g010150 82.857 210 34 1 4 213 3 210 9.57e-126 357
MS.gene80665.t1 MTR_2g094270 70.638 235 61 2 32 259 17 250 1.77e-119 343
MS.gene80665.t1 MTR_4g415300 77.103 214 47 2 1 213 1 213 2.65e-119 341
MS.gene80665.t1 MTR_1g095070 77.838 185 40 1 99 283 23 206 1.17e-100 294
MS.gene80665.t1 MTR_4g059390 67.513 197 57 3 23 213 7 202 6.84e-88 261
MS.gene80665.t1 MTR_1g095070 71.271 181 39 2 99 279 23 190 6.21e-86 255
MS.gene80665.t1 MTR_6g069040 39.149 235 127 6 55 285 21 243 1.85e-32 120
MS.gene80665.t1 MTR_2g101370 36.364 231 132 5 50 277 15 233 1.70e-31 117
MS.gene80665.t1 MTR_1g077540 37.069 232 127 7 55 281 21 238 2.07e-31 117
MS.gene80665.t1 MTR_8g013680 36.910 233 130 6 50 277 12 232 1.29e-30 115
MS.gene80665.t1 MTR_5g012810 35.841 226 129 5 55 277 19 231 1.42e-27 107
MS.gene80665.t1 MTR_4g063090 33.333 237 143 5 44 277 10 234 6.13e-27 105
MS.gene80665.t1 MTR_1g115405 33.333 243 135 7 44 277 10 234 1.81e-26 104
MS.gene80665.t1 MTR_7g103030 33.878 245 141 8 45 283 11 240 2.82e-26 103
MS.gene80665.t1 MTR_1g006490 35.135 222 125 7 55 273 19 224 2.89e-25 101
MS.gene80665.t1 MTR_7g023350 34.052 232 126 7 55 277 21 234 7.40e-24 97.8
MS.gene80665.t1 MTR_1g006590 35.345 232 119 10 55 277 19 228 8.32e-24 97.4
MS.gene80665.t1 MTR_5g079570 27.481 262 159 6 25 275 2 243 1.52e-21 91.7
MS.gene80665.t1 MTR_2g017660 30.093 216 129 6 58 270 42 238 5.89e-20 87.4
MS.gene80665.t1 MTR_2g060360 30.901 233 131 7 55 277 19 231 8.43e-20 86.7
MS.gene80665.t1 MTR_4g084880 26.923 234 150 6 58 287 38 254 1.07e-19 86.7
MS.gene80665.t1 MTR_8g087710 30.126 239 144 8 53 287 37 256 1.39e-18 84.0
MS.gene80665.t1 MTR_5g063930 30.131 229 143 7 50 277 32 244 2.30e-18 82.8
MS.gene80665.t1 MTR_2g017590 32.407 216 124 6 58 270 39 235 3.17e-18 82.8
MS.gene80665.t1 MTR_7g010650 28.139 231 143 7 53 280 35 245 5.96e-17 79.3
MS.gene80665.t1 MTR_2g017620 31.674 221 129 6 53 270 22 223 8.49e-17 78.6
MS.gene80665.t1 MTR_3g008920 27.803 223 142 4 58 277 25 231 9.72e-17 78.6
MS.gene80665.t1 MTR_2g017620 31.674 221 129 6 53 270 36 237 1.14e-16 78.6
MS.gene80665.t1 MTR_8g087720 28.448 232 143 8 52 279 35 247 1.64e-16 77.8
MS.gene80665.t1 MTR_2g017610 32.258 217 123 8 58 270 41 237 2.87e-16 77.4
MS.gene80665.t1 MTR_4g075570 31.183 186 107 7 102 272 95 274 4.03e-16 77.8
MS.gene80665.t1 MTR_2g017570 31.019 216 127 7 58 270 41 237 5.39e-16 76.6
MS.gene80665.t1 MTR_4g006730 26.923 234 143 7 37 270 68 273 2.21e-15 75.1
MS.gene80665.t1 MTR_4g075590 25.106 235 160 5 47 270 29 258 4.37e-15 74.7
MS.gene80665.t1 MTR_2g104940 29.167 216 128 7 59 270 84 278 3.36e-14 72.0
MS.gene80665.t1 MTR_1g097840 26.667 225 147 6 59 282 78 285 9.64e-13 67.8
MS.gene80665.t1 MTR_4g006630 29.050 179 113 4 92 270 22 186 1.05e-12 66.2
MS.gene80665.t1 MTR_4g006730 29.050 179 113 4 92 270 22 186 1.05e-12 66.2
MS.gene80665.t1 MTR_2g017620 33.529 170 94 6 104 270 3 156 1.30e-12 65.5
MS.gene80665.t1 MTR_1g070385 26.667 225 146 6 52 275 59 265 3.26e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80665.t1 AT4G00430 86.159 289 37 2 1 289 1 286 0.0 503
MS.gene80665.t1 AT2G45960 84.083 289 42 2 1 289 1 285 5.61e-179 494
MS.gene80665.t1 AT4G23400 85.121 289 40 2 1 289 1 286 2.11e-169 471
MS.gene80665.t1 AT3G61430 84.429 289 41 2 1 289 1 285 2.56e-169 470
MS.gene80665.t1 AT3G61430 84.429 289 41 2 1 289 1 285 2.56e-169 470
MS.gene80665.t1 AT1G01620 84.429 289 41 2 1 289 1 285 2.88e-168 468
MS.gene80665.t1 AT2G45960 83.398 259 39 2 1 259 1 255 5.94e-157 439
MS.gene80665.t1 AT2G45960 83.398 259 39 2 1 259 1 255 1.21e-155 436
MS.gene80665.t1 AT2G37180 72.243 263 66 3 32 288 14 275 2.20e-134 382
MS.gene80665.t1 AT2G37170 72.243 263 66 3 32 288 57 318 1.70e-133 381
MS.gene80665.t1 AT4G35100 72.374 257 70 1 32 288 15 270 3.91e-133 379
MS.gene80665.t1 AT4G35100 72.374 257 70 1 32 288 15 270 3.91e-133 379
MS.gene80665.t1 AT2G37170 72.243 263 66 3 32 288 14 275 4.61e-133 379
MS.gene80665.t1 AT3G53420 72.830 265 61 4 32 288 16 277 4.63e-133 379
MS.gene80665.t1 AT3G53420 72.830 265 61 4 32 288 16 277 4.63e-133 379
MS.gene80665.t1 AT2G16850 71.984 257 71 1 32 288 13 268 2.21e-131 374
MS.gene80665.t1 AT1G01620 86.916 214 27 1 76 289 1 213 4.53e-131 370
MS.gene80665.t1 AT3G54820 69.811 265 69 3 32 288 15 276 2.81e-130 371
MS.gene80665.t1 AT4G00430 82.488 217 35 2 1 217 1 214 2.18e-127 362
MS.gene80665.t1 AT5G60660 68.679 265 72 4 32 288 16 277 6.08e-127 363
MS.gene80665.t1 AT2G39010 67.300 263 79 2 32 288 15 276 1.95e-126 362
MS.gene80665.t1 AT2G39010 64.894 188 59 2 32 213 15 201 1.53e-81 245
MS.gene80665.t1 AT3G16240 37.168 226 127 5 55 277 19 232 2.00e-31 117
MS.gene80665.t1 AT5G47450 37.662 231 129 7 50 277 14 232 1.29e-30 115
MS.gene80665.t1 AT4G01470 35.593 236 137 5 45 277 11 234 3.77e-30 114
MS.gene80665.t1 AT1G73190 37.083 240 130 7 55 285 24 251 6.17e-30 114
MS.gene80665.t1 AT1G17810 35.146 239 134 7 55 284 24 250 8.61e-30 114
MS.gene80665.t1 AT4G17340 36.283 226 129 6 55 277 19 232 5.10e-27 106
MS.gene80665.t1 AT2G36830 32.389 247 136 8 44 279 10 236 1.91e-26 104
MS.gene80665.t1 AT3G26520 32.231 242 137 7 42 277 15 235 1.12e-25 102
MS.gene80665.t1 AT2G25810 35.652 230 130 7 55 281 19 233 6.93e-24 97.8
MS.gene80665.t1 AT3G47440 31.687 243 135 8 50 281 18 240 1.25e-22 94.4
MS.gene80665.t1 AT1G31885 29.150 247 154 6 26 270 22 249 6.63e-20 88.2
MS.gene80665.t1 AT4G19030 27.985 268 175 7 26 288 26 280 3.86e-19 85.9
MS.gene80665.t1 AT5G37820 29.032 217 128 7 58 269 82 277 2.35e-16 78.2
MS.gene80665.t1 AT5G37820 29.032 217 128 7 58 269 46 241 2.48e-16 77.8
MS.gene80665.t1 AT1G31885 29.082 196 129 4 77 270 8 195 5.75e-16 76.6
MS.gene80665.t1 AT4G18910 27.509 269 175 8 26 287 21 276 7.44e-16 76.6
MS.gene80665.t1 AT2G34390 26.071 280 178 9 6 277 2 260 1.80e-15 75.5
MS.gene80665.t1 AT4G10380 24.901 253 158 6 33 270 41 276 1.77e-12 67.0
MS.gene80665.t1 AT5G37810 27.189 217 132 7 58 269 46 241 1.96e-12 66.6
MS.gene80665.t1 AT1G80760 25.301 249 166 6 32 280 60 288 2.51e-12 66.6
MS.gene80665.t1 AT2G34390 26.667 225 145 7 58 277 9 218 4.06e-12 65.1

Find 81 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCAAGTGGTTGTCTTTC+TGG 0.098743 5.4:+64729947 None:intergenic
CAAGGAATTGCTTGGGCTTT+TGG 0.147648 5.4:-64729722 MS.gene80665:CDS
TATTCTTGCAGTGGATCTTC+TGG 0.169058 5.4:-64726661 MS.gene80665:intron
TTAATACCAGTTCCAGTAAT+TGG 0.193062 5.4:+64726851 None:intergenic
TTCTGGGTGGGACCATTTAT+TGG 0.238352 5.4:-64726644 MS.gene80665:CDS
TTTGAAGGAAAGACAAGATT+TGG 0.252728 5.4:-64727216 MS.gene80665:CDS
CGCTGTGTTCTTGGTTCACT+TGG 0.261822 5.4:-64726882 MS.gene80665:CDS
GCAAGAGCTGCTCCAATAAA+TGG 0.306781 5.4:+64726632 None:intergenic
AATTGGGTTCGCTGTGTTCT+TGG 0.323972 5.4:-64726891 MS.gene80665:CDS
AAACAGTGATATAAAGAAAA+AGG 0.328096 5.4:+64729798 None:intergenic
GGTGGCTCTTGATAGTCCTT+AGG 0.343217 5.4:+64729902 None:intergenic
TCCCAAGTGGTTGTCTTTCT+GGG 0.348961 5.4:+64729948 None:intergenic
CTACATGGTGATGCAATGTT+TGG 0.359716 5.4:-64727271 MS.gene80665:CDS
AGCCATCTGAACTGACTTCA+TGG 0.369669 5.4:-64729862 MS.gene80665:CDS
AAAGAACAGGATGTGTCTTT+AGG 0.370646 5.4:-64729983 MS.gene80665:CDS
ATTCTTGCAGTGGATCTTCT+GGG 0.373293 5.4:-64726660 MS.gene80665:intron
GATAGTCCTTAGGGTCATCT+TGG 0.381110 5.4:+64729912 None:intergenic
TAAATCCAGCAGTGACATTT+GGG 0.385302 5.4:-64727335 MS.gene80665:CDS
ATAAATCCAGCAGTGACATT+TGG 0.387473 5.4:-64727336 MS.gene80665:CDS
TACTGTACTGCTGGAATCTC+AGG 0.389203 5.4:-64729677 MS.gene80665:intron
TTGGGTGCTATTTGTGGTGC+TGG 0.389900 5.4:-64727252 MS.gene80665:CDS
TTGTCTTTCTGGGAATTTGT+TGG 0.391781 5.4:+64729958 None:intergenic
TTGGCCACTATCCCAATTAC+TGG 0.392883 5.4:-64726863 MS.gene80665:CDS
GCTCTTGTTTACTGTACTGC+TGG 0.392947 5.4:-64729686 MS.gene80665:CDS
CAATGTTTGGGTGCTATTTG+TGG 0.409953 5.4:-64727258 MS.gene80665:CDS
TAATACCAGTTCCAGTAATT+GGG 0.410603 5.4:+64726852 None:intergenic
GGGGATTCAAGGAATTGCTT+GGG 0.411864 5.4:-64729729 MS.gene80665:CDS
TGCAAGACTGTGGGGATTCA+AGG 0.413230 5.4:-64729740 MS.gene80665:CDS
TCATGGTCTTTCTATAGAGC+TGG 0.423680 5.4:-64729845 MS.gene80665:CDS
ACTATCCCAATTACTGGAAC+TGG 0.426227 5.4:-64726857 MS.gene80665:CDS
GGTGCCAACTTTGTTGCTCC+TGG 0.427799 5.4:-64727180 MS.gene80665:CDS
ATTTGATCACTTAGACTTGA+AGG 0.433397 5.4:+64726574 None:intergenic
AGCACCAAGACCGTCACCTT+TGG 0.443507 5.4:+64727152 None:intergenic
TGGGGATTCAAGGAATTGCT+TGG 0.444258 5.4:-64729730 MS.gene80665:CDS
CTTCAACAAGGACCTTGGTT+GGG 0.451717 5.4:-64726798 MS.gene80665:CDS
GTGGCTCTTGATAGTCCTTA+GGG 0.463360 5.4:+64729903 None:intergenic
TACATGGTGATGCAATGTTT+GGG 0.464448 5.4:-64727270 MS.gene80665:CDS
ATTAACCCTGCTCGTAGTCT+TGG 0.478309 5.4:-64726833 MS.gene80665:CDS
TGTGGTGCTGGTGTTGTGAA+AGG 0.479519 5.4:-64727240 MS.gene80665:CDS
TCAAACAACGGTGCTGGTGG+TGG 0.481920 5.4:+64729884 None:intergenic
AATAGCCCAAATGTCACTGC+TGG 0.486149 5.4:+64727330 None:intergenic
TCTTCAACAAGGACCTTGGT+TGG 0.493563 5.4:-64726799 MS.gene80665:CDS
AAGAACACAGCGAACCCAAT+TGG 0.494251 5.4:+64726893 None:intergenic
ACAAGATTTGGAGATTTGAA+AGG 0.499860 5.4:-64727204 MS.gene80665:CDS
GATGGCTCAAACAACGGTGC+TGG 0.510215 5.4:+64729878 None:intergenic
AGTTCCAGTAATTGGGATAG+TGG 0.513529 5.4:+64726859 None:intergenic
CATGGTCTTTCTATAGAGCT+GGG 0.520612 5.4:-64729844 MS.gene80665:CDS
AGTTCAGATGGCTCAAACAA+CGG 0.521397 5.4:+64729872 None:intergenic
ATTATCTTCAACAAGGACCT+TGG 0.525491 5.4:-64726803 MS.gene80665:CDS
GACCATGAAGTCAGTTCAGA+TGG 0.532853 5.4:+64729860 None:intergenic
TTGCAGTGGATCTTCTGGGT+GGG 0.533501 5.4:-64726656 MS.gene80665:intron
GTTGCTCCTGGTTACACCAA+AGG 0.542015 5.4:-64727168 MS.gene80665:CDS
GGTCTTGGTGCTGAAATTGT+TGG 0.547516 5.4:-64727141 MS.gene80665:CDS
GATTCTAAGTGCAAGACTGT+GGG 0.549634 5.4:-64729749 MS.gene80665:CDS
TCACTTAGACTTGAAGGGAA+TGG 0.553226 5.4:+64726580 None:intergenic
TACACCAAAGGTGACGGTCT+TGG 0.554395 5.4:-64727156 MS.gene80665:CDS
GACAAGAGCATTGTTCTACA+TGG 0.557563 5.4:-64727286 MS.gene80665:CDS
TTTGATCACTTAGACTTGAA+GGG 0.559600 5.4:+64726575 None:intergenic
CCGTCACCTTTGGTGTAACC+AGG 0.566415 5.4:+64727162 None:intergenic
AGCATCGGTGGCTGAGAAGA+CGG 0.570780 5.4:+64727098 None:intergenic
AGATTTGGAGATTTGAAAGG+TGG 0.576074 5.4:-64727201 MS.gene80665:CDS
GCAGCACCAAGACTACGAGC+AGG 0.585086 5.4:+64726827 None:intergenic
TCAAAGCCAAGATGACCCTA+AGG 0.586870 5.4:-64729918 MS.gene80665:CDS
TCCCAGAAAGACAACCACTT+GGG 0.597140 5.4:-64729949 MS.gene80665:CDS
CTTGCAGTGGATCTTCTGGG+TGG 0.604626 5.4:-64726657 MS.gene80665:intron
TGATTCTAAGTGCAAGACTG+TGG 0.613803 5.4:-64729750 MS.gene80665:CDS
GTAGAACAATGCTCTTGTCA+AGG 0.615840 5.4:+64727290 None:intergenic
CTTTGAGCTGCAATCCCAAG+TGG 0.615951 5.4:+64729935 None:intergenic
TTCCCAGAAAGACAACCACT+TGG 0.616137 5.4:-64729950 MS.gene80665:CDS
CCTGGTTACACCAAAGGTGA+CGG 0.620526 5.4:-64727162 MS.gene80665:CDS
AGCGCTACGTTTAGCATCGG+TGG 0.622224 5.4:+64727086 None:intergenic
GGCTCAAACAACGGTGCTGG+TGG 0.625378 5.4:+64729881 None:intergenic
GTAACCAGGAGCAACAAAGT+TGG 0.636963 5.4:+64727176 None:intergenic
ACAGCGAACCCAATTGGCAA+TGG 0.642498 5.4:+64726899 None:intergenic
TGCTGCTATTATCTTCAACA+AGG 0.649253 5.4:-64726810 MS.gene80665:CDS
ATTCTAAGTGCAAGACTGTG+GGG 0.656720 5.4:-64729748 MS.gene80665:CDS
CAGCACCAAGACTACGAGCA+GGG 0.662928 5.4:+64726828 None:intergenic
TCTAGCGCTACGTTTAGCAT+CGG 0.680627 5.4:+64727083 None:intergenic
TTACGTGATCATCCCAACCA+AGG 0.707418 5.4:+64726786 None:intergenic
TGGCTCTGATTACGACCACG+TGG 0.762119 5.4:+64726600 None:intergenic
TCTTGCAGCACTCTACCACG+TGG 0.776974 5.4:-64726615 MS.gene80665:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAAAGTTGAAAT+AGG - chr5.4:64728182-64728201 MS.gene80665:intron 10.0%
!! GAAAATAATAATTATAATGA+AGG - chr5.4:64728858-64728877 MS.gene80665:intron 10.0%
!!! AATTTTTATTTTTCTGTTAT+AGG - chr5.4:64727019-64727038 MS.gene80665:intron 10.0%
!!! TATATTTTAGTTTATTTTGA+TGG + chr5.4:64727239-64727258 None:intergenic 10.0%
!! AAATAATATATAAACTTACC+AGG - chr5.4:64727530-64727549 MS.gene80665:intron 15.0%
!! AATATAACTAATTATTTGTG+TGG - chr5.4:64729625-64729644 MS.gene80665:intron 15.0%
!! TTTAATGTATTAATGTTTGA+TGG + chr5.4:64728085-64728104 None:intergenic 15.0%
!!! TACATATATGTTGTTATTTA+AGG + chr5.4:64726941-64726960 None:intergenic 15.0%
!!! TAGTTTAAATTTTGAATGAT+CGG + chr5.4:64727292-64727311 None:intergenic 15.0%
!!! TTTTTTGGGAAAATTATAAT+TGG + chr5.4:64728598-64728617 None:intergenic 15.0%
!! AAAAAACTACTAATATACAG+TGG + chr5.4:64728950-64728969 None:intergenic 20.0%
!! AAACAGTGATATAAAGAAAA+AGG + chr5.4:64726777-64726796 None:intergenic 20.0%
!! AGTAATTTCATAGAAAGAAT+GGG - chr5.4:64728888-64728907 MS.gene80665:intron 20.0%
!! ATTAATTATTATTCTTGCAG+TGG - chr5.4:64729902-64729921 MS.gene80665:CDS 20.0%
!! ATTAGAGACAAATTAAGATT+TGG - chr5.4:64728293-64728312 MS.gene80665:intron 20.0%
!! GTATGATTAAAAACATGATA+AGG + chr5.4:64727765-64727784 None:intergenic 20.0%
!! TAACAAAACAAAAGAATCTA+CGG - chr5.4:64728229-64728248 MS.gene80665:intron 20.0%
!! TAATCTCATGATAAAATATG+TGG + chr5.4:64728571-64728590 None:intergenic 20.0%
!! TACATAAATTTCATTCAAAC+TGG + chr5.4:64727069-64727088 None:intergenic 20.0%
!! TAGTAATTTCATAGAAAGAA+TGG - chr5.4:64728887-64728906 MS.gene80665:intron 20.0%
!! TTAGAGACAAATTAAGATTT+GGG - chr5.4:64728294-64728313 MS.gene80665:intron 20.0%
!!! ACTAAATTTAGTTTTTCCTA+TGG - chr5.4:64727042-64727061 MS.gene80665:intron 20.0%
!!! AGATTCTTTTGTTTTGTTAT+AGG + chr5.4:64728228-64728247 None:intergenic 20.0%
!!! ATTTATACTTTTGATGTTAC+AGG + chr5.4:64727979-64727998 None:intergenic 20.0%
!!! ATTTTAGTTTATTTTGATGG+CGG + chr5.4:64727236-64727255 None:intergenic 20.0%
!!! CATTTTTTTCTTCTAGAAAA+GGG + chr5.4:64728265-64728284 None:intergenic 20.0%
!!! CTTATTTTATGAGTAGATTT+TGG - chr5.4:64729648-64729667 MS.gene80665:intron 20.0%
!!! GATTCTTTTGTTTTGTTATA+GGG + chr5.4:64728227-64728246 None:intergenic 20.0%
!!! GTAGTACTTATAATTTTTGA+AGG - chr5.4:64726972-64726991 MS.gene80665:intron 20.0%
!!! TATATTAGTAGTTTTTTGTG+TGG - chr5.4:64728953-64728972 MS.gene80665:intron 20.0%
!!! TCATTTTTTTCTTCTAGAAA+AGG + chr5.4:64728266-64728285 None:intergenic 20.0%
!!! TCTAAGAAAGTGTAATTATA+TGG - chr5.4:64727098-64727117 MS.gene80665:CDS 20.0%
!!! TTTATACTTTTGATGTTACA+GGG + chr5.4:64727978-64727997 None:intergenic 20.0%
! AAACATAGAATACTTAGACT+TGG - chr5.4:64727468-64727487 MS.gene80665:intron 25.0%
! AAATAACATGATGCTAATCT+AGG + chr5.4:64728384-64728403 None:intergenic 25.0%
! AACAAAACAAAAGAATCTAC+GGG - chr5.4:64728230-64728249 MS.gene80665:intron 25.0%
! AATAACAAATACTTGTCTCA+AGG - chr5.4:64727632-64727651 MS.gene80665:intron 25.0%
! AGCATAAGAAATACAATACA+GGG - chr5.4:64728323-64728342 MS.gene80665:intron 25.0%
! GTAATTTCATAGAAAGAATG+GGG - chr5.4:64728889-64728908 MS.gene80665:intron 25.0%
! TTATGAATATGTCCTTATCA+TGG + chr5.4:64729064-64729083 None:intergenic 25.0%
! TTCTGAATATATATTAGCAG+TGG - chr5.4:64727174-64727193 MS.gene80665:CDS 25.0%
! TTTAACCACTTGAAATTGAA+AGG - chr5.4:64728106-64728125 MS.gene80665:intron 25.0%
!! CTGTCTTTTATTAGTCAATT+TGG - chr5.4:64729178-64729197 MS.gene80665:intron 25.0%
!! GTATTGATCTAATGTTAGTT+TGG - chr5.4:64729146-64729165 MS.gene80665:intron 25.0%
!! TGTTGTTATTATTCTTATGC+AGG + chr5.4:64727713-64727732 None:intergenic 25.0%
!! TTTTTCCTTTCAATTTCAAG+TGG + chr5.4:64728114-64728133 None:intergenic 25.0%
!!! AATTTTGAATGATCGGTTTT+TGG + chr5.4:64727285-64727304 None:intergenic 25.0%
!!! CTTGTTGCTTTATTGTAATT+CGG + chr5.4:64728536-64728555 None:intergenic 25.0%
!!! TTCTATGTTTTTTTTCTCCT+TGG + chr5.4:64727458-64727477 None:intergenic 25.0%
!!! TTTTAGTTTATTTTGATGGC+GGG + chr5.4:64727235-64727254 None:intergenic 25.0%
AAAAGTTGAAATAGGCAAGT+AGG - chr5.4:64728190-64728209 MS.gene80665:intron 30.0%
AAACTACTAATATACAGTGG+CGG + chr5.4:64728947-64728966 None:intergenic 30.0%
AAAGTTGAAATAGGCAAGTA+GGG - chr5.4:64728191-64728210 MS.gene80665:intron 30.0%
AAGTAACAACTACCATGATA+AGG - chr5.4:64729049-64729068 MS.gene80665:intron 30.0%
ACAAGATTTGGAGATTTGAA+AGG - chr5.4:64729368-64729387 MS.gene80665:intron 30.0%
CAGCATAAGAAATACAATAC+AGG - chr5.4:64728322-64728341 MS.gene80665:intron 30.0%
CGAAGAACATATTTCAGATT+TGG - chr5.4:64728435-64728454 MS.gene80665:intron 30.0%
CTGATGAAAGAGAAAATTGA+TGG - chr5.4:64728815-64728834 MS.gene80665:intron 30.0%
GAAGAGAATAGATATCTTGA+TGG + chr5.4:64727359-64727378 None:intergenic 30.0%
TAATACCAGTTCCAGTAATT+GGG + chr5.4:64729723-64729742 None:intergenic 30.0%
TATCTAATTCTTCAGCACTA+AGG - chr5.4:64727402-64727421 MS.gene80665:intron 30.0%
TGAATATATATTAGCAGTGG+CGG - chr5.4:64727177-64727196 MS.gene80665:CDS 30.0%
TGATGGAAAAACATTTGTGT+CGG + chr5.4:64727342-64727361 None:intergenic 30.0%
TTAATACCAGTTCCAGTAAT+TGG + chr5.4:64729724-64729743 None:intergenic 30.0%
TTATTATTCTTATGCAGGCA+GGG + chr5.4:64727708-64727727 None:intergenic 30.0%
TTTGAAGGAAAGACAAGATT+TGG - chr5.4:64729356-64729375 MS.gene80665:intron 30.0%
! ATTTTCTCTTTCATCAGAAG+TGG + chr5.4:64728812-64728831 None:intergenic 30.0%
! TTTTTGCTGAGTATACTTGT+AGG + chr5.4:64728352-64728371 None:intergenic 30.0%
!!! AAGCTGGAATGGATTTTTTT+GGG + chr5.4:64728612-64728631 None:intergenic 30.0%
!!! ATCACTGTTTTGACTGTTAT+GGG - chr5.4:64726787-64726806 MS.gene80665:intron 30.0%
!!! TATCACTGTTTTGACTGTTA+TGG - chr5.4:64726786-64726805 MS.gene80665:intron 30.0%
AAAGAACAGGATGTGTCTTT+AGG - chr5.4:64726589-64726608 MS.gene80665:CDS 35.0%
AACATGATGCTAATCTAGGA+AGG + chr5.4:64728380-64728399 None:intergenic 35.0%
AAGTTGAAATAGGCAAGTAG+GGG - chr5.4:64728192-64728211 MS.gene80665:intron 35.0%
AATTGCATACTGTGTGATAC+AGG - chr5.4:64729206-64729225 MS.gene80665:intron 35.0%
ACATGAGAAAACTTTGTGTG+TGG - chr5.4:64727665-64727684 MS.gene80665:intron 35.0%
ACATGATGCTAATCTAGGAA+GGG + chr5.4:64728379-64728398 None:intergenic 35.0%
AGAGAGTTCATAGAAGTCTT+TGG - chr5.4:64727862-64727881 MS.gene80665:intron 35.0%
AGATTTGGAGATTTGAAAGG+TGG - chr5.4:64729371-64729390 MS.gene80665:intron 35.0%
ATAAATCCAGCAGTGACATT+TGG - chr5.4:64729236-64729255 MS.gene80665:intron 35.0%
ATCAGATTTGTAAGCTTGGT+TGG - chr5.4:64728760-64728779 MS.gene80665:intron 35.0%
ATTATCTTCAACAAGGACCT+TGG - chr5.4:64729769-64729788 MS.gene80665:CDS 35.0%
ATTTCATAGAAAGAATGGGG+TGG - chr5.4:64728892-64728911 MS.gene80665:intron 35.0%
CCATCTTATGCTGATATTTG+GGG + chr5.4:64727562-64727581 None:intergenic 35.0%
CCCAAATATCAGCATAAGAT+GGG - chr5.4:64727560-64727579 MS.gene80665:intron 35.0%
CCCATCTTATGCTGATATTT+GGG + chr5.4:64727563-64727582 None:intergenic 35.0%
GATTTAGCTGATCCAATAGA+AGG + chr5.4:64727911-64727930 None:intergenic 35.0%
GTTATTATTCTTATGCAGGC+AGG + chr5.4:64727709-64727728 None:intergenic 35.0%
TAAATCCAGCAGTGACATTT+GGG - chr5.4:64729237-64729256 MS.gene80665:intron 35.0%
TAATGTTTGATGGAAGCAGA+AGG + chr5.4:64728075-64728094 None:intergenic 35.0%
TAGATATCAGAATGAGACAG+AGG + chr5.4:64727388-64727407 None:intergenic 35.0%
TATGTTCTTCGCATACTTGT+AGG + chr5.4:64728426-64728445 None:intergenic 35.0%
TCAGATTTGTAAGCTTGGTT+GGG - chr5.4:64728761-64728780 MS.gene80665:intron 35.0%
TCCCATCTTATGCTGATATT+TGG + chr5.4:64727564-64727583 None:intergenic 35.0%
TGACAGTGTAAAGAGACTTA+CGG + chr5.4:64729528-64729547 None:intergenic 35.0%
TGCTGCTATTATCTTCAACA+AGG - chr5.4:64729762-64729781 MS.gene80665:CDS 35.0%
TTATGCTGATATTTGGGGAT+GGG + chr5.4:64727557-64727576 None:intergenic 35.0%
TTGGTGCAAAGTTTATAGCA+AGG - chr5.4:64727881-64727900 MS.gene80665:intron 35.0%
TTTCATTCAAACTGGTCCAT+AGG + chr5.4:64727061-64727080 None:intergenic 35.0%
TTTCTTCATGTTTGCAGATG+TGG + chr5.4:64727605-64727624 None:intergenic 35.0%
! ATTCCACCTTTCTTCAGTTT+TGG - chr5.4:64727833-64727852 MS.gene80665:intron 35.0%
! GAAGAGAAAGCATACAGATT+TGG - chr5.4:64728704-64728723 MS.gene80665:intron 35.0%
! GAGAGGTATGATGTAATAGT+TGG + chr5.4:64727935-64727954 None:intergenic 35.0%
! GTTGCTTTATTGTAATTCGG+AGG + chr5.4:64728533-64728552 None:intergenic 35.0%
! TACATGGTGATGCAATGTTT+GGG - chr5.4:64729302-64729321 MS.gene80665:intron 35.0%
! TTGTCTTTCTGGGAATTTGT+TGG + chr5.4:64726617-64726636 None:intergenic 35.0%
!! AGTGACATTTGGGCTATTTT+TGG - chr5.4:64729247-64729266 MS.gene80665:intron 35.0%
!!! GAAGCTGGAATGGATTTTTT+TGG + chr5.4:64728613-64728632 None:intergenic 35.0%
AACTAGAAGGCAAAGAAGAG+AGG + chr5.4:64727952-64727971 None:intergenic 40.0%
AAGCCAAAACTGAAGAAAGG+TGG + chr5.4:64727839-64727858 None:intergenic 40.0%
ACTATCCCAATTACTGGAAC+TGG - chr5.4:64729715-64729734 MS.gene80665:CDS 40.0%
AGGTGGAATATTTGTGACAC+AGG + chr5.4:64727822-64727841 None:intergenic 40.0%
AGTTCAGATGGCTCAAACAA+CGG + chr5.4:64726703-64726722 None:intergenic 40.0%
AGTTCCAGTAATTGGGATAG+TGG + chr5.4:64729716-64729735 None:intergenic 40.0%
ATATTTGTGACACAGGTAGG+TGG + chr5.4:64727815-64727834 None:intergenic 40.0%
ATTCTAAGTGCAAGACTGTG+GGG - chr5.4:64726824-64726843 MS.gene80665:CDS 40.0%
ATTCTTGCAGTGGATCTTCT+GGG - chr5.4:64729912-64729931 MS.gene80665:CDS 40.0%
CATGGTCTTTCTATAGAGCT+GGG - chr5.4:64726728-64726747 MS.gene80665:intron 40.0%
CCCCAAATATCAGCATAAGA+TGG - chr5.4:64727559-64727578 MS.gene80665:intron 40.0%
CTCAAGCCAAAACTGAAGAA+AGG + chr5.4:64727842-64727861 None:intergenic 40.0%
CTTATGCTGATATTTGGGGA+TGG + chr5.4:64727558-64727577 None:intergenic 40.0%
GACAGTGTAAAGAGACTTAC+GGG + chr5.4:64729527-64729546 None:intergenic 40.0%
GAGCCAGACAAAAATGTTTG+GGG - chr5.4:64727199-64727218 MS.gene80665:CDS 40.0%
GATGGGATATGAGCTGAATA+AGG - chr5.4:64727577-64727596 MS.gene80665:intron 40.0%
GATTCTAAGTGCAAGACTGT+GGG - chr5.4:64726823-64726842 MS.gene80665:CDS 40.0%
GGAATATTTGTGACACAGGT+AGG + chr5.4:64727818-64727837 None:intergenic 40.0%
GGAGCCAGACAAAAATGTTT+GGG - chr5.4:64727198-64727217 MS.gene80665:CDS 40.0%
GGCTGAGAATTTATTTGGAG+CGG + chr5.4:64728512-64728531 None:intergenic 40.0%
GGTGGAATTTAAGCATAGGT+TGG + chr5.4:64728491-64728510 None:intergenic 40.0%
GTAGAACAATGCTCTTGTCA+AGG + chr5.4:64729285-64729304 None:intergenic 40.0%
GTGGATCAGATTTGTAAGCT+TGG - chr5.4:64728756-64728775 MS.gene80665:intron 40.0%
TAGCAAGGATCTCCTTCTAT+TGG - chr5.4:64727896-64727915 MS.gene80665:intron 40.0%
TATTCTTGCAGTGGATCTTC+TGG - chr5.4:64729911-64729930 MS.gene80665:CDS 40.0%
TCACTTAGACTTGAAGGGAA+TGG + chr5.4:64729995-64730014 None:intergenic 40.0%
TCATGGTCTTTCTATAGAGC+TGG - chr5.4:64726727-64726746 MS.gene80665:intron 40.0%
TCGGAGGCTGAGAATTTATT+TGG + chr5.4:64728517-64728536 None:intergenic 40.0%
TGATTCTAAGTGCAAGACTG+TGG - chr5.4:64726822-64726841 MS.gene80665:CDS 40.0%
TTCCTGCACAATTTCACACT+TGG + chr5.4:64728841-64728860 None:intergenic 40.0%
! CTACATGGTGATGCAATGTT+TGG - chr5.4:64729301-64729320 MS.gene80665:intron 40.0%
! GAGAATCTGAAGCCTGTTAT+AGG - chr5.4:64727432-64727451 MS.gene80665:intron 40.0%
! TAATATACAGTGGCGGAACT+GGG + chr5.4:64728940-64728959 None:intergenic 40.0%
! TGAGAATTTATTTGGAGCGG+TGG + chr5.4:64728509-64728528 None:intergenic 40.0%
! TTTTCTCCTTGGCCTATAAC+AGG + chr5.4:64727447-64727466 None:intergenic 40.0%
! TTTTGGCACCATTGCCAATT+GGG - chr5.4:64729665-64729684 MS.gene80665:intron 40.0%
!! ATTTTGGCACCATTGCCAAT+TGG - chr5.4:64729664-64729683 MS.gene80665:intron 40.0%
!! CAATGTTTGGGTGCTATTTG+TGG - chr5.4:64729314-64729333 MS.gene80665:intron 40.0%
!! CATAGGTTGGCAATCTTTTG+TGG + chr5.4:64728478-64728497 None:intergenic 40.0%
!! GAAAGCATACAGATTTGGTG+TGG - chr5.4:64728709-64728728 MS.gene80665:intron 40.0%
!! GACAAGAGCATTGTTCTACA+TGG - chr5.4:64729286-64729305 MS.gene80665:intron 40.0%
!! GGTGTTGTGAAAGGTTTTGA+AGG - chr5.4:64729341-64729360 MS.gene80665:intron 40.0%
!!! CATTTGGGCTATTTTTGGCA+AGG - chr5.4:64729252-64729271 MS.gene80665:intron 40.0%
!!! TTATTTTGATGGCGGGATGA+CGG + chr5.4:64727228-64727247 None:intergenic 40.0%
AAGAACACAGCGAACCCAAT+TGG + chr5.4:64729682-64729701 None:intergenic 45.0%
AATAGCCCAAATGTCACTGC+TGG + chr5.4:64729245-64729264 None:intergenic 45.0%
AATTGGGTTCGCTGTGTTCT+TGG - chr5.4:64729681-64729700 MS.gene80665:CDS 45.0%
ACAGGCTTCAGATTCTCCAT+TGG + chr5.4:64727429-64727448 None:intergenic 45.0%
ATCCCAAGTGGTTGTCTTTC+TGG + chr5.4:64726628-64726647 None:intergenic 45.0%
ATTAACCCTGCTCGTAGTCT+TGG - chr5.4:64729739-64729758 MS.gene80665:CDS 45.0%
CCAGACAAAAATGTTTGGGG+TGG - chr5.4:64727202-64727221 MS.gene80665:CDS 45.0%
CGGAGCCAGACAAAAATGTT+TGG - chr5.4:64727197-64727216 MS.gene80665:CDS 45.0%
CTTCAACAAGGACCTTGGTT+GGG - chr5.4:64729774-64729793 MS.gene80665:CDS 45.0%
GACCATGAAGTCAGTTCAGA+TGG + chr5.4:64726715-64726734 None:intergenic 45.0%
GAGCGGTGGAATTTAAGCAT+AGG + chr5.4:64728495-64728514 None:intergenic 45.0%
GATAGTCCTTAGGGTCATCT+TGG + chr5.4:64726663-64726682 None:intergenic 45.0%
GCAAGAGCTGCTCCAATAAA+TGG + chr5.4:64729943-64729962 None:intergenic 45.0%
GGGGATTCAAGGAATTGCTT+GGG - chr5.4:64726843-64726862 MS.gene80665:CDS 45.0%
GTAACCAGGAGCAACAAAGT+TGG + chr5.4:64729399-64729418 None:intergenic 45.0%
GTTGTGTTGTGCGTACTGTT+CGG + chr5.4:64728648-64728667 None:intergenic 45.0%
TACTGTACTGCTGGAATCTC+AGG - chr5.4:64726895-64726914 MS.gene80665:CDS 45.0%
TCAAAGCCAAGATGACCCTA+AGG - chr5.4:64726654-64726673 MS.gene80665:intron 45.0%
TCATAGAAAGAATGGGGTGG+CGG - chr5.4:64728895-64728914 MS.gene80665:intron 45.0%
TCCCAAGTGGTTGTCTTTCT+GGG + chr5.4:64726627-64726646 None:intergenic 45.0%
TCCCAGAAAGACAACCACTT+GGG - chr5.4:64726623-64726642 MS.gene80665:CDS 45.0%
TCTAGCGCTACGTTTAGCAT+CGG + chr5.4:64729492-64729511 None:intergenic 45.0%
TCTTCAACAAGGACCTTGGT+TGG - chr5.4:64729773-64729792 MS.gene80665:CDS 45.0%
TCTTCAGCACTAAGGTCCAA+TGG - chr5.4:64727410-64727429 MS.gene80665:intron 45.0%
TGCATACTGTGTGATACAGG+TGG - chr5.4:64729209-64729228 MS.gene80665:intron 45.0%
TGGGGATTCAAGGAATTGCT+TGG - chr5.4:64726842-64726861 MS.gene80665:CDS 45.0%
TGTGTACGAAGAAGCTGGAA+TGG + chr5.4:64728623-64728642 None:intergenic 45.0%
TGTTACAGGGCTGAACTAGA+AGG + chr5.4:64727965-64727984 None:intergenic 45.0%
TGTTTGATGGAAGCAGAAGG+TGG + chr5.4:64728072-64728091 None:intergenic 45.0%
TTACGTGATCATCCCAACCA+AGG + chr5.4:64729789-64729808 None:intergenic 45.0%
TTCCCAGAAAGACAACCACT+TGG - chr5.4:64726622-64726641 MS.gene80665:CDS 45.0%
TTCTGGGTGGGACCATTTAT+TGG - chr5.4:64729928-64729947 MS.gene80665:CDS 45.0%
TTGGCCACTATCCCAATTAC+TGG - chr5.4:64729709-64729728 MS.gene80665:CDS 45.0%
! AATATACAGTGGCGGAACTG+GGG + chr5.4:64728939-64728958 None:intergenic 45.0%
! AGCCATCTGAACTGACTTCA+TGG - chr5.4:64726710-64726729 MS.gene80665:intron 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5.4:64726850-64726869 MS.gene80665:CDS 45.0%
! CCACCCCAAACATTTTTGTC+TGG + chr5.4:64727205-64727224 None:intergenic 45.0%
! CTAATATACAGTGGCGGAAC+TGG + chr5.4:64728941-64728960 None:intergenic 45.0%
! GCTCTTGTTTACTGTACTGC+TGG - chr5.4:64726886-64726905 MS.gene80665:CDS 45.0%
! GTGGCTCTTGATAGTCCTTA+GGG + chr5.4:64726672-64726691 None:intergenic 45.0%
!! GGTCTTGGTGCTGAAATTGT+TGG - chr5.4:64729431-64729450 MS.gene80665:intron 45.0%
!! AAAATAATAATTATAATGAA+GGG - chr5.4:64728859-64728878 MS.gene80665:intron 5.0%
AAATCTGATCCACCACCACC+AGG + chr5.4:64728749-64728768 None:intergenic 50.0%
ACAGCGAACCCAATTGGCAA+TGG + chr5.4:64729676-64729695 None:intergenic 50.0%
CCTGGTTACACCAAAGGTGA+CGG - chr5.4:64729410-64729429 MS.gene80665:intron 50.0%
CGCTGTGTTCTTGGTTCACT+TGG - chr5.4:64729690-64729709 MS.gene80665:CDS 50.0%
CGGATTGTGTACGAAGAAGC+TGG + chr5.4:64728628-64728647 None:intergenic 50.0%
CTGAAGCCTGTTATAGGCCA+AGG - chr5.4:64727438-64727457 MS.gene80665:intron 50.0%
CTTTGAGCTGCAATCCCAAG+TGG + chr5.4:64726640-64726659 None:intergenic 50.0%
GGCCAAGTGTGAAATTGTGC+AGG - chr5.4:64728836-64728855 MS.gene80665:intron 50.0%
GTGTGGCTGAATATTCCAGC+AGG - chr5.4:64727682-64727701 MS.gene80665:intron 50.0%
GTTGCTCCTGGTTACACCAA+AGG - chr5.4:64729404-64729423 MS.gene80665:intron 50.0%
TGATATTTGGGGATGGGTCC+TGG + chr5.4:64727551-64727570 None:intergenic 50.0%
TGCAAGACTGTGGGGATTCA+AGG - chr5.4:64726832-64726851 MS.gene80665:CDS 50.0%
TTGCAGTGGATCTTCTGGGT+GGG - chr5.4:64729916-64729935 MS.gene80665:CDS 50.0%
TTTGTGACACAGGTAGGTGG+TGG + chr5.4:64727812-64727831 None:intergenic 50.0%
! ATATACAGTGGCGGAACTGG+GGG + chr5.4:64728938-64728957 None:intergenic 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5.4:64726853-64726872 MS.gene80665:CDS 50.0%
! GGTGGCTCTTGATAGTCCTT+AGG + chr5.4:64726673-64726692 None:intergenic 50.0%
! TACACCAAAGGTGACGGTCT+TGG - chr5.4:64729416-64729435 MS.gene80665:intron 50.0%
!! ACAGATTTGGTGTGGACGTG+TGG - chr5.4:64728717-64728736 MS.gene80665:intron 50.0%
!! TGTGGTGCTGGTGTTGTGAA+AGG - chr5.4:64729332-64729351 MS.gene80665:intron 50.0%
!! TTGGGTGCTATTTGTGGTGC+TGG - chr5.4:64729320-64729339 MS.gene80665:intron 50.0%
AGCACCAAGACCGTCACCTT+TGG + chr5.4:64729423-64729442 None:intergenic 55.0%
CAGCACCAAGACTACGAGCA+GGG + chr5.4:64729747-64729766 None:intergenic 55.0%
CTTGCAGTGGATCTTCTGGG+TGG - chr5.4:64729915-64729934 MS.gene80665:CDS 55.0%
GATGGCTCAAACAACGGTGC+TGG + chr5.4:64726697-64726716 None:intergenic 55.0%
GGTGCCAACTTTGTTGCTCC+TGG - chr5.4:64729392-64729411 MS.gene80665:intron 55.0%
TCTTGCAGCACTCTACCACG+TGG - chr5.4:64729957-64729976 MS.gene80665:CDS 55.0%
! AGCGCTACGTTTAGCATCGG+TGG + chr5.4:64729489-64729508 None:intergenic 55.0%
! CCGTCACCTTTGGTGTAACC+AGG + chr5.4:64729413-64729432 None:intergenic 55.0%
! TAGAAAGAATGGGGTGGCGG+TGG - chr5.4:64728898-64728917 MS.gene80665:intron 55.0%
! TATACAGTGGCGGAACTGGG+GGG + chr5.4:64728937-64728956 None:intergenic 55.0%
!! AGCATCGGTGGCTGAGAAGA+CGG + chr5.4:64729477-64729496 None:intergenic 55.0%
!! GATTTGGTGTGGACGTGTGG+TGG - chr5.4:64728720-64728739 MS.gene80665:intron 55.0%
!! TCAAACAACGGTGCTGGTGG+TGG + chr5.4:64726691-64726710 None:intergenic 55.0%
!! TGGCTCTGATTACGACCACG+TGG + chr5.4:64729975-64729994 None:intergenic 55.0%
GACGTGTGGTGGTTACCTGG+TGG - chr5.4:64728731-64728750 MS.gene80665:intron 60.0%
GCAGCACCAAGACTACGAGC+AGG + chr5.4:64729748-64729767 None:intergenic 60.0%
GTGGACGTGTGGTGGTTACC+TGG - chr5.4:64728728-64728747 MS.gene80665:intron 60.0%
GTGTGGTGGTTACCTGGTGG+TGG - chr5.4:64728734-64728753 MS.gene80665:intron 60.0%
! GGCTCAAACAACGGTGCTGG+TGG + chr5.4:64726694-64726713 None:intergenic 60.0%
!! TGGTGGTTACCTGGTGGTGG+TGG - chr5.4:64728737-64728756 MS.gene80665:intron 60.0%
CTTATGCAGGCAGGGCCTGC+TGG + chr5.4:64727700-64727719 None:intergenic 65.0%
CGGAACTGGGGGGTGGCAAG+GGG + chr5.4:64728927-64728946 None:intergenic 70.0%
GCGGAACTGGGGGGTGGCAA+GGG + chr5.4:64728928-64728947 None:intergenic 70.0%
! ACAGTGGCGGAACTGGGGGG+TGG + chr5.4:64728934-64728953 None:intergenic 70.0%
GGCGGAACTGGGGGGTGGCA+AGG + chr5.4:64728929-64728948 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 64726580 64730014 64726580 ID=MS.gene80665
chr5.4 mRNA 64726580 64730014 64726580 ID=MS.gene80665.t1;Parent=MS.gene80665
chr5.4 exon 64729678 64730014 64729678 ID=MS.gene80665.t1.exon1;Parent=MS.gene80665.t1
chr5.4 CDS 64729678 64730014 64729678 ID=cds.MS.gene80665.t1;Parent=MS.gene80665.t1
chr5.4 exon 64727068 64727366 64727068 ID=MS.gene80665.t1.exon2;Parent=MS.gene80665.t1
chr5.4 CDS 64727068 64727366 64727068 ID=cds.MS.gene80665.t1;Parent=MS.gene80665.t1
chr5.4 exon 64726790 64726930 64726790 ID=MS.gene80665.t1.exon3;Parent=MS.gene80665.t1
chr5.4 CDS 64726790 64726930 64726790 ID=cds.MS.gene80665.t1;Parent=MS.gene80665.t1
chr5.4 exon 64726580 64726672 64726580 ID=MS.gene80665.t1.exon4;Parent=MS.gene80665.t1
chr5.4 CDS 64726580 64726672 64726580 ID=cds.MS.gene80665.t1;Parent=MS.gene80665.t1
Gene Sequence

>MS.gene80665

ATGGAAGCTAAAGAACAGGATGTGTCTTTAGGAGCCAACAAATTCCCAGAAAGACAACCACTTGGGATTGCAGCTCAAAGCCAAGATGACCCTAAGGACTATCAAGAGCCACCACCAGCACCGTTGTTTGAGCCATCTGAACTGACTTCATGGTCTTTCTATAGAGCTGGGATAGCTGAGTTCGTTGCTACTTTCCTTTTTCTTTATATCACTGTTTTGACTGTTATGGGTGTTGTTAGAGCTGATTCTAAGTGCAAGACTGTGGGGATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTTTACTGTACTGCTGGAATCTCAGGTATAGAATATTTTCTATTTTCCTTAAATAACAACATATATGTAATAAATATTCTGTAGTACTTATAATTTTTGAAGGTTAGTTCATTCAGAAATTTTGTTCAATTTTTATTTTTCTGTTATAGGACTAAATTTAGTTTTTCCTATGGACCAGTTTGAATGAAATTTATGTAAAGAATTAATCTAAGAAAGTGTAATTATATGGAGATTAAAAACATAATTAATTCTAATAATAATAATGATAACAATAATTATAATTTCTGAATATATATTAGCAGTGGCGGAGCCAGACAAAAATGTTTGGGGTGGCCGTCATCCCGCCATCAAAATAAACTAAAATATAATATATAAATCATTCAAAATAAACCAAAAACCGATCATTCAAAATTTAAACTACATATCTAAAGACGCACTTTACGCTTTCCGACACAAATGTTTTTCCATCAAGATATCTATTCTCTTCAACAATCCTCTGTCTCATTCTGATATCTAATTCTTCAGCACTAAGGTCCAATGGAGAATCTGAAGCCTGTTATAGGCCAAGGAGAAAAAAAACATAGAATACTTAGACTTGGTCATAAGAATTTGTATTAAAATGAAATTTTATCATCAATAAATAATATATAAACTTACCAGGACCCATCCCCAAATATCAGCATAAGATGGGATATGAGCTGAATAAGGCACCACATCTGCAAACATGAAGAAAACATGTTAATAACAAATACTTGTCTCAAGGTGTTGTAAATACATGAGAAAACTTTGTGTGTGGCTGAATATTCCAGCAGGCCCTGCCTGCATAAGAATAATAACAACAATATTACATTTTGAATTCTGTTTCTTTCACCTTATCATGTTTTTAATCATACATATTAGTGACACAAGTATATCTTCCACCACCTACCTGTGTCACAAATATTCCACCTTTCTTCAGTTTTGGCTTGAGAGAGAGTTCATAGAAGTCTTTGGTGCAAAGTTTATAGCAAGGATCTCCTTCTATTGGATCAGCTAAATCACCAACTATTACATCATACCTCTCTTCTTTGCCTTCTAGTTCAGCCCTGTAACATCAAAAGTATAAATTTTAGAAATGATCATAATCATTATAGCTGTAATATCAAATTAATCTTAGTAAGTGATTTGCAAAACTCAACCACCTTCTGCTTCCATCAAACATTAATACATTAAATTTTAACCACTTGAAATTGAAAGGAAAAAAATAAATGTCAACATATACTACGTTTTTTTTTTTATTAATGTCAATTGAAATAAAAAAAAGTTGAAATAGGCAAGTAGGGGCGTGAAGAACCCTATAACAAAACAAAAGAATCTACGGGTAAAATAAACCCTTTTCTAGAAGAAAAAAATGAATTTAAAATTAGAGACAAATTAAGATTTGGGACACTCAGCATAAGAAATACAATACAGGGATGCCTACAAGTATACTCAGCAAAAATAAACCCTTCCTAGATTAGCATCATGTTATTTATTAGCAGCAGAAAGTCTACCTACAAGTATGCGAAGAACATATTTCAGATTTGGACTCTAAATTATTATCACCACAAAAGATTGCCAACCTATGCTTAAATTCCACCGCTCCAAATAAATTCTCAGCCTCCGAATTACAATAAAGCAACAAGACAAGACAATAACCACATATTTTATCATGAGATTAAGAACCAATTATAATTTTCCCAAAAAAATCCATTCCAGCTTCTTCGTACACAATCCGAACAGTACGCACAACACAACAGATTTGTAAGCATACATACTAGATGAAAGAGAAGAGAAGAGAAAGCATACAGATTTGGTGTGGACGTGTGGTGGTTACCTGGTGGTGGTGGATCAGATTTGTAAGCTTGGTTGGGAGAGAAGAGAAAGCGCGTTCTCTTTCCACTTCTGATGAAAGAGAAAATTGATGGCCAAGTGTGAAATTGTGCAGGAAAATAATAATTATAATGAAGGGTAAAATAGTAATTTCATAGAAAGAATGGGGTGGCGGTGGCAACCCCTTGCCACCCCCCAGTTCCGCCACTGTATATTAGTAGTTTTTTGTGTGGAATTAAGATAAGCTCACTGCTCAGCTAAAGTTAAATTAAAAGAATAACATAAACATGTGCTAGTGACACTAACAAGTAACAACTACCATGATAAGGACATATTCATAATAATTTGATAAAATATTTCAACAAAAATAAATAATAATTTGATAAAACAAAAGTAATTAAATGTATTGATCTAATGTTAGTTTGGTCTTTGAATCTGTCTTTTATTAGTCAATTTGGTATAAAATTGCATACTGTGTGATACAGGTGGTCACATAAATCCAGCAGTGACATTTGGGCTATTTTTGGCAAGGAAATTGTCCTTGACAAGAGCATTGTTCTACATGGTGATGCAATGTTTGGGTGCTATTTGTGGTGCTGGTGTTGTGAAAGGTTTTGAAGGAAAGACAAGATTTGGAGATTTGAAAGGTGGTGCCAACTTTGTTGCTCCTGGTTACACCAAAGGTGACGGTCTTGGTGCTGAAATTGTTGGCACTTTCATTCTTGTTTACACCGTCTTCTCAGCCACCGATGCTAAACGTAGCGCTAGAGACTCTCATGTTCCCGTAAGTCTCTTTACACTGTCAATTAATCATAACTGCGAATTTTTATAAACATTTAACTTTAATCATATGCACTTAATAATGTTAATTTTTACATGAATAATATAACTAATTATTTGTGTGGCTTATTTTATGAGTAGATTTTGGCACCATTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACTATCCCAATTACTGGAACTGGTATTAACCCTGCTCGTAGTCTTGGTGCTGCTATTATCTTCAACAAGGACCTTGGTTGGGATGATCACGTAAGTTGAAAAATTGAAATTAATTAAATTCATATTGTTTTTGTAAAATTATGTATTTATTTTTCTGAATTTTCTATCTCATTTATCTTGTGTTTTCATTAATTATTATTCTTGCAGTGGATCTTCTGGGTGGGACCATTTATTGGAGCAGCTCTTGCAGCACTCTACCACGTGGTCGTAATCAGAGCCATTCCCTTCAAGTCTAAGTGA
Protein sequence

>MS.gene80665.t1

MEAKEQDVSLGANKFPERQPLGIAAQSQDDPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITVLTVMGVVRADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFEGKTRFGDLKGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHVVVIRAIPFKSK