Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80865.t1 | XP_003622292.1 | 98.5 | 265 | 4 | 0 | 1 | 265 | 8 | 272 | 1.50E-151 | 545.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80865.t1 | Q6DEY3 | 47.5 | 263 | 125 | 6 | 1 | 252 | 22 | 282 | 1.7e-63 | 244.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80865.t1 | Q2HUX9 | 98.5 | 265 | 4 | 0 | 1 | 265 | 8 | 272 | 1.1e-151 | 545.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29080 | MS.gene80865 | PPI |
| MS.gene70715 | MS.gene80865 | PPI |
| MS.gene61996 | MS.gene80865 | PPI |
| MS.gene80865 | MS.gene76004 | PPI |
| MS.gene80865 | MS.gene052632 | PPI |
| MS.gene80865 | MS.gene78717 | PPI |
| MS.gene80865 | MS.gene022408 | PPI |
| MS.gene44751 | MS.gene80865 | PPI |
| MS.gene022013 | MS.gene80865 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80865.t1 | MTR_7g032640 | 98.347 | 363 | 6 | 0 | 1 | 363 | 8 | 370 | 0.0 | 743 |
| MS.gene80865.t1 | MTR_3g075410 | 75.871 | 373 | 80 | 2 | 1 | 363 | 8 | 380 | 0.0 | 592 |
| MS.gene80865.t1 | MTR_7g017430 | 64.481 | 366 | 106 | 2 | 1 | 357 | 8 | 358 | 2.85e-171 | 482 |
| MS.gene80865.t1 | MTR_6g018930 | 56.510 | 361 | 112 | 4 | 1 | 331 | 8 | 353 | 1.03e-143 | 411 |
| MS.gene80865.t1 | MTR_8g037335 | 61.654 | 266 | 97 | 2 | 1 | 261 | 8 | 273 | 4.66e-117 | 343 |
| MS.gene80865.t1 | MTR_5g029210 | 61.654 | 266 | 97 | 2 | 1 | 261 | 8 | 273 | 2.59e-115 | 341 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80865.t1 | AT5G14390 | 75.741 | 371 | 71 | 6 | 1 | 362 | 8 | 368 | 0.0 | 565 |
| MS.gene80865.t1 | AT3G01690 | 76.033 | 363 | 76 | 4 | 1 | 362 | 8 | 360 | 0.0 | 558 |
| MS.gene80865.t1 | AT4G24760 | 71.507 | 365 | 92 | 5 | 1 | 362 | 8 | 363 | 0.0 | 528 |
| MS.gene80865.t1 | AT3G30380 | 63.187 | 364 | 117 | 5 | 1 | 360 | 8 | 358 | 9.57e-166 | 468 |
| MS.gene80865.t1 | AT3G30380 | 63.889 | 360 | 113 | 5 | 1 | 356 | 8 | 354 | 1.84e-165 | 468 |
| MS.gene80865.t1 | AT5G38220 | 61.442 | 319 | 109 | 3 | 1 | 307 | 8 | 324 | 1.22e-146 | 418 |
| MS.gene80865.t1 | AT5G38220 | 61.442 | 319 | 109 | 3 | 1 | 307 | 8 | 324 | 1.22e-146 | 418 |
| MS.gene80865.t1 | AT1G66900 | 67.939 | 262 | 83 | 1 | 1 | 261 | 8 | 269 | 1.59e-135 | 387 |
| MS.gene80865.t1 | AT4G31020 | 66.797 | 256 | 85 | 0 | 1 | 256 | 8 | 263 | 4.36e-130 | 374 |
| MS.gene80865.t1 | AT4G31020 | 66.797 | 256 | 85 | 0 | 1 | 256 | 8 | 263 | 4.36e-130 | 374 |
| MS.gene80865.t1 | AT1G13610 | 53.784 | 370 | 117 | 8 | 1 | 362 | 8 | 331 | 6.36e-129 | 374 |
| MS.gene80865.t1 | AT2G24320 | 61.719 | 256 | 97 | 1 | 1 | 256 | 8 | 262 | 3.26e-123 | 357 |
| MS.gene80865.t1 | AT2G24320 | 61.719 | 256 | 97 | 1 | 1 | 256 | 1 | 255 | 4.33e-123 | 356 |
| MS.gene80865.t1 | AT1G32190 | 56.134 | 269 | 109 | 1 | 1 | 260 | 8 | 276 | 7.78e-109 | 325 |
| MS.gene80865.t1 | AT5G38220 | 68.159 | 201 | 62 | 1 | 1 | 201 | 8 | 206 | 1.53e-102 | 302 |
| MS.gene80865.t1 | AT1G13610 | 52.124 | 259 | 75 | 5 | 108 | 362 | 18 | 231 | 8.01e-78 | 240 |
| MS.gene80865.t1 | AT1G32190 | 60.390 | 154 | 61 | 0 | 107 | 260 | 38 | 191 | 3.36e-64 | 207 |
Find 69 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTCTCGAACAAAATTT+TGG | 0.201492 | 7.4:+69576686 | MS.gene80865:CDS |
| TGTTGCAGCTATGATTATTC+TGG | 0.206051 | 7.4:+69576503 | MS.gene80865:intron |
| TTGCACAGTCCAATACTTTC+TGG | 0.217252 | 7.4:+69576806 | MS.gene80865:CDS |
| TCATGGTAACGCTGCTGATC+TGG | 0.228996 | 7.4:+69574988 | MS.gene80865:CDS |
| GTCCAATACTTTCTGGCTTA+AGG | 0.292115 | 7.4:+69576813 | MS.gene80865:CDS |
| AACCAGTATGAACGCTTTAC+TGG | 0.303616 | 7.4:-69576845 | None:intergenic |
| CAAGAAGATATAATCCTTTA+CGG | 0.308045 | 7.4:+69576716 | MS.gene80865:CDS |
| GTTGATCATCAATTAGAAAA+AGG | 0.324209 | 7.4:+69577996 | MS.gene80865:CDS |
| TTGACCGACTCGACAGAATA+AGG | 0.327499 | 7.4:+69578030 | MS.gene80865:CDS |
| TCCAATACTTTCTGGCTTAA+GGG | 0.333040 | 7.4:+69576814 | MS.gene80865:CDS |
| ATACTGGTTTGACATATATA+AGG | 0.371998 | 7.4:+69576859 | MS.gene80865:CDS |
| AGGAGGTAACCACTGCGATT+TGG | 0.387176 | 7.4:+69577659 | MS.gene80865:CDS |
| AGTTTGTATGATGGTGGGTT+TGG | 0.393247 | 7.4:-69574815 | None:intergenic |
| CTAATAAAAGATGATTTAAC+AGG | 0.398985 | 7.4:+69574836 | MS.gene80865:CDS |
| GGTTTGTCTGTGCTCTTCCT+TGG | 0.400736 | 7.4:-69577849 | None:intergenic |
| TTTATTAGTTTGTATGATGG+TGG | 0.402269 | 7.4:-69574821 | None:intergenic |
| TGTTGGAAGTGGCCCGACTT+TGG | 0.409126 | 7.4:+69576745 | MS.gene80865:CDS |
| GTTGCAGCTATGATTATTCT+GGG | 0.416709 | 7.4:+69576504 | MS.gene80865:intron |
| AATACATCTGTACTCTTTCG+AGG | 0.422095 | 7.4:-69577789 | None:intergenic |
| TTATTAGTTTGTATGATGGT+GGG | 0.433824 | 7.4:-69574820 | None:intergenic |
| AGCTCTTTCCTGAGTACATA+AGG | 0.434394 | 7.4:+69577682 | MS.gene80865:CDS |
| TTGTATGATGGTGGGTTTGG+TGG | 0.435014 | 7.4:-69574812 | None:intergenic |
| TCAACTCTTCTTTACTCTCA+TGG | 0.456071 | 7.4:+69574971 | MS.gene80865:CDS |
| CTTACATGAACTATGAGAAC+TGG | 0.461132 | 7.4:-69576995 | None:intergenic |
| ATCCAGTAAAGCGTTCATAC+TGG | 0.462552 | 7.4:+69576843 | MS.gene80865:CDS |
| CATGGTAACGCTGCTGATCT+GGG | 0.462664 | 7.4:+69574989 | MS.gene80865:CDS |
| GTTCCCACGGTAAACAACTC+TGG | 0.488152 | 7.4:+69577598 | MS.gene80865:CDS |
| CACTTGCGTGTTAATCTCAT+GGG | 0.493106 | 7.4:+69575046 | MS.gene80865:CDS |
| CAAACTGATCTGTACTCCTT+CGG | 0.494197 | 7.4:-69577761 | None:intergenic |
| TCTGGGTACGGACAGTCGTC+AGG | 0.495232 | 7.4:+69576521 | MS.gene80865:CDS |
| ATCCTTTACGGACAATCTGT+TGG | 0.497874 | 7.4:+69576728 | MS.gene80865:CDS |
| GAATATGTGTTCTGCTCACT+TGG | 0.498037 | 7.4:-69576644 | None:intergenic |
| ACCCTTAAGCCAGAAAGTAT+TGG | 0.501968 | 7.4:-69576815 | None:intergenic |
| ACACTTGCGTGTTAATCTCA+TGG | 0.506893 | 7.4:+69575045 | MS.gene80865:CDS |
| AGCTATGATTATTCTGGGTA+CGG | 0.516000 | 7.4:+69576509 | MS.gene80865:intron |
| TTCAGATGCCTTATGTACTC+AGG | 0.521538 | 7.4:-69577690 | None:intergenic |
| TACGGACAATCTGTTGGAAG+TGG | 0.524349 | 7.4:+69576734 | MS.gene80865:CDS |
| CGACTTTGGATCTTGCAGCT+AGG | 0.528104 | 7.4:+69576759 | MS.gene80865:CDS |
| TAGCTGCAAGATCCAAAGTC+GGG | 0.536628 | 7.4:-69576757 | None:intergenic |
| TTCCCACGGTAAACAACTCT+GGG | 0.537591 | 7.4:+69577599 | MS.gene80865:CDS |
| AGAAGAGTTGAAGTAGCCAT+TGG | 0.544121 | 7.4:-69574959 | None:intergenic |
| TTGATCATAAAGAGAGATCT+CGG | 0.544423 | 7.4:+69577937 | MS.gene80865:CDS |
| TACGAACCGCTGTGGCTCAA+AGG | 0.545828 | 7.4:+69577639 | MS.gene80865:CDS |
| AAAACAACAGCTCGTAATTG+AGG | 0.546917 | 7.4:-69576785 | None:intergenic |
| TGTTTATGTTCGTCATCCAA+TGG | 0.557896 | 7.4:+69574943 | MS.gene80865:CDS |
| TTCCAACAGATTGTCCGTAA+AGG | 0.559246 | 7.4:-69576730 | None:intergenic |
| GCGTCGAGGAACGGAGATTG+TGG | 0.567034 | 7.4:+69574919 | MS.gene80865:CDS |
| GAGCACAGACAAACCAGAGA+AGG | 0.574334 | 7.4:+69577857 | MS.gene80865:CDS |
| TTCCCAGAGTTGTTTACCGT+GGG | 0.578572 | 7.4:-69577601 | None:intergenic |
| AACTCGTCTTCTGGTAATGG+TGG | 0.581119 | 7.4:+69577885 | MS.gene80865:CDS |
| TGGTAATGGTGGTGATATGT+TGG | 0.588758 | 7.4:+69577896 | MS.gene80865:CDS |
| ATGAAACTTTCGACGCGTCG+AGG | 0.590434 | 7.4:+69574905 | MS.gene80865:CDS |
| ACTTTCGACGCGTCGAGGAA+CGG | 0.595538 | 7.4:+69574910 | MS.gene80865:CDS |
| GAAGTTGTAGATTGTTCCCA+CGG | 0.597143 | 7.4:+69577585 | MS.gene80865:CDS |
| CTAGCTGCAAGATCCAAAGT+CGG | 0.626114 | 7.4:-69576758 | None:intergenic |
| GTTCCCAGAGTTGTTTACCG+TGG | 0.627371 | 7.4:-69577602 | None:intergenic |
| GTACGGACAGTCGTCAGGAA+AGG | 0.635204 | 7.4:+69576526 | MS.gene80865:CDS |
| CGCAACGATACAGTTTCCGA+AGG | 0.635941 | 7.4:+69577745 | MS.gene80865:CDS |
| CGGAAACTGTATCGTTGCGA+CGG | 0.636387 | 7.4:-69577741 | None:intergenic |
| CAGTCCTTATTCTGTCGAGT+CGG | 0.637149 | 7.4:-69578034 | None:intergenic |
| GAACACATATTCAGATATCG+AGG | 0.641431 | 7.4:+69576655 | MS.gene80865:CDS |
| CTGATCGTAGAGAAAAGCCA+AGG | 0.642341 | 7.4:+69577832 | MS.gene80865:CDS |
| CGACTCGACAGAATAAGGAC+TGG | 0.649791 | 7.4:+69578035 | MS.gene80865:CDS |
| AGAACTGGACAATTAACTAG+TGG | 0.652581 | 7.4:-69576980 | None:intergenic |
| GAACCGCTGTGGCTCAAAGG+AGG | 0.668822 | 7.4:+69577642 | MS.gene80865:CDS |
| AAGAGAAATACGAACCGCTG+TGG | 0.674674 | 7.4:+69577631 | MS.gene80865:CDS |
| GAAAGAGCTCCAAATCGCAG+TGG | 0.722360 | 7.4:-69577668 | None:intergenic |
| ACTTGCGTGTTAATCTCATG+GGG | 0.729434 | 7.4:+69575047 | MS.gene80865:CDS |
| TTACCTCCTTTGAGCCACAG+CGG | 0.729457 | 7.4:-69577645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGAAATTTTCTTTTTTT+TGG | + | chr7.4:69575147-69575166 | MS.gene80865:intron | 10.0% |
| !!! | TCATTTCATTTTGAATATTT+GGG | + | chr7.4:69577232-69577251 | MS.gene80865:intron | 15.0% |
| !! | CTAATAAAAGATGATTTAAC+AGG | + | chr7.4:69574836-69574855 | MS.gene80865:CDS | 20.0% |
| !!! | GTCATTTCATTTTGAATATT+TGG | + | chr7.4:69577231-69577250 | MS.gene80865:intron | 20.0% |
| !!! | TATATCTTTCAAGTAGTTTT+TGG | + | chr7.4:69575089-69575108 | MS.gene80865:intron | 20.0% |
| !!! | TCTTTTATTAGTTTGTATGA+TGG | - | chr7.4:69574827-69574846 | None:intergenic | 20.0% |
| !!! | TGAAAAACGGTTTTTTTTTT+GGG | + | chr7.4:69576030-69576049 | MS.gene80865:intron | 20.0% |
| !!! | TTGAAAATTTTGCTTCATTT+TGG | + | chr7.4:69575454-69575473 | MS.gene80865:intron | 20.0% |
| !!! | TTTTTTTGGTTTTTTGTTTC+TGG | + | chr7.4:69575161-69575180 | MS.gene80865:intron | 20.0% |
| ! | AAAATCAATAGAAAGGAAAC+TGG | - | chr7.4:69577188-69577207 | None:intergenic | 25.0% |
| ! | ACCTGAACAAAACTAAAAAA+TGG | + | chr7.4:69575765-69575784 | MS.gene80865:intron | 25.0% |
| ! | AGTCAAAAAAATACGAATCT+TGG | - | chr7.4:69577287-69577306 | None:intergenic | 25.0% |
| ! | ATATTCTGCATATATGAACA+CGG | - | chr7.4:69576950-69576969 | None:intergenic | 25.0% |
| ! | ATCATCAATTAGAAAAAGGA+AGG | + | chr7.4:69578000-69578019 | MS.gene80865:CDS | 25.0% |
| ! | ATGCAAAGAAAACTGAAAAA+CGG | + | chr7.4:69576017-69576036 | MS.gene80865:intron | 25.0% |
| ! | CAAACATGTTTATTATGCTA+CGG | + | chr7.4:69577025-69577044 | MS.gene80865:intron | 25.0% |
| ! | CAAGAAGATATAATCCTTTA+CGG | + | chr7.4:69576716-69576735 | MS.gene80865:CDS | 25.0% |
| ! | CAGTACTTCATTACAAAAAT+CGG | - | chr7.4:69576084-69576103 | None:intergenic | 25.0% |
| ! | CATAAAATAAATAAGCCGTT+TGG | - | chr7.4:69575403-69575422 | None:intergenic | 25.0% |
| ! | CCTGAACAAAACTAAAAAAT+GGG | + | chr7.4:69575766-69575785 | MS.gene80865:intron | 25.0% |
| ! | CTGAACAAAACTAAAAAATG+GGG | + | chr7.4:69575767-69575786 | MS.gene80865:intron | 25.0% |
| ! | GATTCTATGTTTGTAAAGTA+AGG | + | chr7.4:69575551-69575570 | MS.gene80865:intron | 25.0% |
| ! | GTTGATCATCAATTAGAAAA+AGG | + | chr7.4:69577996-69578015 | MS.gene80865:CDS | 25.0% |
| ! | TTGTTCATTCTAATTGTTGA+TGG | + | chr7.4:69575795-69575814 | MS.gene80865:intron | 25.0% |
| !! | AAATGTCTCGAACAAAATTT+TGG | + | chr7.4:69576686-69576705 | MS.gene80865:CDS | 25.0% |
| !! | AGAAGAGTCTAAAATATTGT+AGG | - | chr7.4:69577391-69577410 | None:intergenic | 25.0% |
| !!! | ATACTGGTTTGACATATATA+AGG | + | chr7.4:69576859-69576878 | MS.gene80865:CDS | 25.0% |
| !!! | ATGGACAATGTCTATTTTTT+GGG | + | chr7.4:69575814-69575833 | MS.gene80865:intron | 25.0% |
| !!! | ATTTTTTTCATAAGCCATCA+TGG | + | chr7.4:69575275-69575294 | MS.gene80865:intron | 25.0% |
| !!! | CTGAAAAACGGTTTTTTTTT+TGG | + | chr7.4:69576029-69576048 | MS.gene80865:intron | 25.0% |
| !!! | TCCTTTCTATTGATTTTCTT+TGG | + | chr7.4:69577191-69577210 | MS.gene80865:intron | 25.0% |
| !!! | TGATTTCGAATTTTGAGAAA+TGG | + | chr7.4:69575529-69575548 | MS.gene80865:intron | 25.0% |
| !!! | TTATTAGTTTGTATGATGGT+GGG | - | chr7.4:69574823-69574842 | None:intergenic | 25.0% |
| !!! | TTCATTTTGGTTTTTGGTTT+CGG | + | chr7.4:69575467-69575486 | MS.gene80865:intron | 25.0% |
| !!! | TTTATTAGTTTGTATGATGG+TGG | - | chr7.4:69574824-69574843 | None:intergenic | 25.0% |
| !!! | TTTGTAATGAAGTACTGAAT+TGG | + | chr7.4:69576087-69576106 | MS.gene80865:intron | 25.0% |
| !!! | TTTTGCTTCATTTTGGTTTT+TGG | + | chr7.4:69575461-69575480 | MS.gene80865:intron | 25.0% |
| !!! | TTTTTTGTTTGTTGTGCTTT+TGG | + | chr7.4:69575117-69575136 | MS.gene80865:intron | 25.0% |
| AATGTCGTGAAAGATATAGT+TGG | - | chr7.4:69577548-69577567 | None:intergenic | 30.0% | |
| ACATTAATAACCAGACAAGA+GGG | + | chr7.4:69576306-69576325 | MS.gene80865:intron | 30.0% | |
| ATATCTTTCACGACATTTGT+AGG | + | chr7.4:69577551-69577570 | MS.gene80865:intron | 30.0% | |
| CATTGTTTGAATTGTGTTGT+TGG | + | chr7.4:69576135-69576154 | MS.gene80865:intron | 30.0% | |
| CTCAAATAAGTCAATCCAAA+CGG | + | chr7.4:69575385-69575404 | MS.gene80865:intron | 30.0% | |
| GCCAAAGAAAATCAATAGAA+AGG | - | chr7.4:69577195-69577214 | None:intergenic | 30.0% | |
| TATCTTTCACGACATTTGTA+GGG | + | chr7.4:69577552-69577571 | MS.gene80865:intron | 30.0% | |
| TATGTCCAAGTTTATGTTCA+CGG | + | chr7.4:69576282-69576301 | MS.gene80865:intron | 30.0% | |
| TATTCTGCATATATGAACAC+GGG | - | chr7.4:69576949-69576968 | None:intergenic | 30.0% | |
| TTCATTACAAAAATCGGACA+TGG | - | chr7.4:69576078-69576097 | None:intergenic | 30.0% | |
| TTGATCATAAAGAGAGATCT+CGG | + | chr7.4:69577937-69577956 | MS.gene80865:CDS | 30.0% | |
| ! | AATTGTGTTGTTGGATTTCA+TGG | + | chr7.4:69576144-69576163 | MS.gene80865:intron | 30.0% |
| ! | GCTATGTTGTTTAACCAAAA+TGG | + | chr7.4:69577440-69577459 | MS.gene80865:intron | 30.0% |
| ! | GTAAAGTAAGGTGCTTTATT+TGG | + | chr7.4:69575563-69575582 | MS.gene80865:intron | 30.0% |
| ! | TCATAATCTCAACGTTTTCA+CGG | - | chr7.4:69574889-69574908 | None:intergenic | 30.0% |
| ! | TTTTGCATAGACATAACTTC+TGG | + | chr7.4:69577072-69577091 | MS.gene80865:intron | 30.0% |
| !! | AGTTTTAGTATTACAAGCCT+TGG | - | chr7.4:69576190-69576209 | None:intergenic | 30.0% |
| !! | TAATGAAGTACTGAATTGGA+AGG | + | chr7.4:69576091-69576110 | MS.gene80865:intron | 30.0% |
| !! | TCTTTGCATTGACTTATTTG+AGG | - | chr7.4:69576006-69576025 | None:intergenic | 30.0% |
| !!! | CCCATTTTTTAGTTTTGTTC+AGG | - | chr7.4:69575769-69575788 | None:intergenic | 30.0% |
| !!! | GATGGACAATGTCTATTTTT+TGG | + | chr7.4:69575813-69575832 | MS.gene80865:intron | 30.0% |
| !!! | TCATTTTGGTTTTTGGTTTC+GGG | + | chr7.4:69575468-69575487 | MS.gene80865:intron | 30.0% |
| !!! | TTTTTTTCTTTTGACACCCT+TGG | + | chr7.4:69577161-69577180 | MS.gene80865:intron | 30.0% |
| AAAAACTCGTCTTCTGGTAA+TGG | + | chr7.4:69577882-69577901 | MS.gene80865:CDS | 35.0% | |
| AAAACAACAGCTCGTAATTG+AGG | - | chr7.4:69576788-69576807 | None:intergenic | 35.0% | |
| AAGGTAAAAAACTCGTCTTC+TGG | + | chr7.4:69577876-69577895 | MS.gene80865:CDS | 35.0% | |
| AATACATCTGTACTCTTTCG+AGG | - | chr7.4:69577792-69577811 | None:intergenic | 35.0% | |
| AGAACTGGACAATTAACTAG+TGG | - | chr7.4:69576983-69577002 | None:intergenic | 35.0% | |
| AGCTATGATTATTCTGGGTA+CGG | + | chr7.4:69576509-69576528 | MS.gene80865:intron | 35.0% | |
| AGTGAGAAATGAGGATTCAT+GGG | + | chr7.4:69575506-69575525 | MS.gene80865:intron | 35.0% | |
| ATTGTTCTTGTAAGCTCTCA+TGG | + | chr7.4:69575676-69575695 | MS.gene80865:intron | 35.0% | |
| CACATTAATAACCAGACAAG+AGG | + | chr7.4:69576305-69576324 | MS.gene80865:intron | 35.0% | |
| CATTAATAACCAGACAAGAG+GGG | + | chr7.4:69576307-69576326 | MS.gene80865:intron | 35.0% | |
| CTTACATGAACTATGAGAAC+TGG | - | chr7.4:69576998-69577017 | None:intergenic | 35.0% | |
| GAACACATATTCAGATATCG+AGG | + | chr7.4:69576655-69576674 | MS.gene80865:CDS | 35.0% | |
| GCAAACAAGTAGTGTAACAA+AGG | - | chr7.4:69577422-69577441 | None:intergenic | 35.0% | |
| GTTGCAGCTATGATTATTCT+GGG | + | chr7.4:69576504-69576523 | MS.gene80865:intron | 35.0% | |
| TCAACTCTTCTTTACTCTCA+TGG | + | chr7.4:69574971-69574990 | MS.gene80865:CDS | 35.0% | |
| TCGCGCATACATAAATTTGA+TGG | + | chr7.4:69576594-69576613 | MS.gene80865:intron | 35.0% | |
| TGTTGCAGCTATGATTATTC+TGG | + | chr7.4:69576503-69576522 | MS.gene80865:intron | 35.0% | |
| TGTTTATGTTCGTCATCCAA+TGG | + | chr7.4:69574943-69574962 | MS.gene80865:CDS | 35.0% | |
| TTGGACATACAACAAAATCG+TGG | - | chr7.4:69576271-69576290 | None:intergenic | 35.0% | |
| TTTGCTTAGAGTGAGAAATG+AGG | + | chr7.4:69575497-69575516 | MS.gene80865:intron | 35.0% | |
| ! | CATTTCGCTTGTATCCATTT+TGG | - | chr7.4:69577457-69577476 | None:intergenic | 35.0% |
| ! | CCAGAAATTTTCATCACGAA+GGG | - | chr7.4:69576377-69576396 | None:intergenic | 35.0% |
| ! | TCCAGAAATTTTCATCACGA+AGG | - | chr7.4:69576378-69576397 | None:intergenic | 35.0% |
| !! | AAGTACTGAATTGGAAGGTA+TGG | + | chr7.4:69576096-69576115 | MS.gene80865:intron | 35.0% |
| !! | TCCAATACTTTCTGGCTTAA+GGG | + | chr7.4:69576814-69576833 | MS.gene80865:CDS | 35.0% |
| !! | TCGTATTGATGCTATTTCCA+AGG | + | chr7.4:69576170-69576189 | MS.gene80865:intron | 35.0% |
| !!! | GTTTGTTGTGCTTTTGGTTT+TGG | + | chr7.4:69575123-69575142 | MS.gene80865:intron | 35.0% |
| AACCAGTATGAACGCTTTAC+TGG | - | chr7.4:69576848-69576867 | None:intergenic | 40.0% | |
| AACCTCTTTAGTCACCATGA+TGG | - | chr7.4:69575292-69575311 | None:intergenic | 40.0% | |
| ACACTTGCGTGTTAATCTCA+TGG | + | chr7.4:69575045-69575064 | MS.gene80865:CDS | 40.0% | |
| ACTTGCGTGTTAATCTCATG+GGG | + | chr7.4:69575047-69575066 | MS.gene80865:CDS | 40.0% | |
| AGAAGAGTTGAAGTAGCCAT+TGG | - | chr7.4:69574962-69574981 | None:intergenic | 40.0% | |
| AGCTCTTTCCTGAGTACATA+AGG | + | chr7.4:69577682-69577701 | MS.gene80865:CDS | 40.0% | |
| ATAGAAAGGAAACTGGACCA+AGG | - | chr7.4:69577181-69577200 | None:intergenic | 40.0% | |
| ATCCTTTACGGACAATCTGT+TGG | + | chr7.4:69576728-69576747 | MS.gene80865:CDS | 40.0% | |
| ATGTGCCGTGAACATAAACT+TGG | - | chr7.4:69576290-69576309 | None:intergenic | 40.0% | |
| CAAACTGATCTGTACTCCTT+CGG | - | chr7.4:69577764-69577783 | None:intergenic | 40.0% | |
| CAAGTAGTGTAACAAAGGAC+AGG | - | chr7.4:69577417-69577436 | None:intergenic | 40.0% | |
| CACTTGCGTGTTAATCTCAT+GGG | + | chr7.4:69575046-69575065 | MS.gene80865:CDS | 40.0% | |
| CCCTTCGTGATGAAAATTTC+TGG | + | chr7.4:69576374-69576393 | MS.gene80865:intron | 40.0% | |
| GAAGTTGTAGATTGTTCCCA+CGG | + | chr7.4:69577585-69577604 | MS.gene80865:CDS | 40.0% | |
| GAATATGTGTTCTGCTCACT+TGG | - | chr7.4:69576647-69576666 | None:intergenic | 40.0% | |
| GAGTGAGAAATGAGGATTCA+TGG | + | chr7.4:69575505-69575524 | MS.gene80865:intron | 40.0% | |
| GTCGTAGCTTGAACTTCAAA+TGG | - | chr7.4:69577487-69577506 | None:intergenic | 40.0% | |
| TAGAAAGGAAACTGGACCAA+GGG | - | chr7.4:69577180-69577199 | None:intergenic | 40.0% | |
| TGAACTGAGCTCAACTTCAA+AGG | + | chr7.4:69576441-69576460 | MS.gene80865:intron | 40.0% | |
| TGTGAAGACTGAAGAGCTTA+TGG | + | chr7.4:69575893-69575912 | MS.gene80865:intron | 40.0% | |
| TTCAGATGCCTTATGTACTC+AGG | - | chr7.4:69577693-69577712 | None:intergenic | 40.0% | |
| TTCCAACAGATTGTCCGTAA+AGG | - | chr7.4:69576733-69576752 | None:intergenic | 40.0% | |
| TTGCACAGTCCAATACTTTC+TGG | + | chr7.4:69576806-69576825 | MS.gene80865:CDS | 40.0% | |
| ! | ACCCTTAAGCCAGAAAGTAT+TGG | - | chr7.4:69576818-69576837 | None:intergenic | 40.0% |
| ! | ATCCAGTAAAGCGTTCATAC+TGG | + | chr7.4:69576843-69576862 | MS.gene80865:CDS | 40.0% |
| !! | AGTTTGTATGATGGTGGGTT+TGG | - | chr7.4:69574818-69574837 | None:intergenic | 40.0% |
| !! | GGGAGCATCTCATTAGATTA+AGG | - | chr7.4:69576929-69576948 | None:intergenic | 40.0% |
| !! | GTCCAATACTTTCTGGCTTA+AGG | + | chr7.4:69576813-69576832 | MS.gene80865:CDS | 40.0% |
| !! | TGGTAATGGTGGTGATATGT+TGG | + | chr7.4:69577896-69577915 | MS.gene80865:CDS | 40.0% |
| !!! | GACGAGTTTTTTACCTTCTC+TGG | - | chr7.4:69577873-69577892 | None:intergenic | 40.0% |
| AAAACATGTGCGAGACTGCT+TGG | - | chr7.4:69575351-69575370 | None:intergenic | 45.0% | |
| AAACATGTGCGAGACTGCTT+GGG | - | chr7.4:69575350-69575369 | None:intergenic | 45.0% | |
| AAGAGAAATACGAACCGCTG+TGG | + | chr7.4:69577631-69577650 | MS.gene80865:CDS | 45.0% | |
| AGCCATCATGGTGACTAAAG+AGG | + | chr7.4:69575287-69575306 | MS.gene80865:intron | 45.0% | |
| CAGTCCTTATTCTGTCGAGT+CGG | - | chr7.4:69578037-69578056 | None:intergenic | 45.0% | |
| CTAGCTGCAAGATCCAAAGT+CGG | - | chr7.4:69576761-69576780 | None:intergenic | 45.0% | |
| CTGATCGTAGAGAAAAGCCA+AGG | + | chr7.4:69577832-69577851 | MS.gene80865:CDS | 45.0% | |
| GTTCTTGTAAGCTCTCATGG+AGG | + | chr7.4:69575679-69575698 | MS.gene80865:intron | 45.0% | |
| TACGGACAATCTGTTGGAAG+TGG | + | chr7.4:69576734-69576753 | MS.gene80865:CDS | 45.0% | |
| TAGCTGCAAGATCCAAAGTC+GGG | - | chr7.4:69576760-69576779 | None:intergenic | 45.0% | |
| TTCCCACGGTAAACAACTCT+GGG | + | chr7.4:69577599-69577618 | MS.gene80865:CDS | 45.0% | |
| TTCCCAGAGTTGTTTACCGT+GGG | - | chr7.4:69577604-69577623 | None:intergenic | 45.0% | |
| ! | AAGCAGTCTCGCACATGTTT+TGG | + | chr7.4:69575350-69575369 | MS.gene80865:intron | 45.0% |
| ! | ACGTTTTCACGGTGAGGAAA+TGG | - | chr7.4:69574878-69574897 | None:intergenic | 45.0% |
| ! | ATCTCAACGTTTTCACGGTG+AGG | - | chr7.4:69574884-69574903 | None:intergenic | 45.0% |
| !! | AACTCGTCTTCTGGTAATGG+TGG | + | chr7.4:69577885-69577904 | MS.gene80865:CDS | 45.0% |
| !! | TTGACCGACTCGACAGAATA+AGG | + | chr7.4:69578030-69578049 | MS.gene80865:CDS | 45.0% |
| !! | TTGTATGATGGTGGGTTTGG+TGG | - | chr7.4:69574815-69574834 | None:intergenic | 45.0% |
| AGCAAGTTACCCCTCTTGTC+TGG | - | chr7.4:69576319-69576338 | None:intergenic | 50.0% | |
| AGGAGGTAACCACTGCGATT+TGG | + | chr7.4:69577659-69577678 | MS.gene80865:CDS | 50.0% | |
| ATGAAACTTTCGACGCGTCG+AGG | + | chr7.4:69574905-69574924 | MS.gene80865:CDS | 50.0% | |
| CATGGAGGCTGAAGAGCTTA+TGG | + | chr7.4:69575694-69575713 | MS.gene80865:intron | 50.0% | |
| CGACTCGACAGAATAAGGAC+TGG | + | chr7.4:69578035-69578054 | MS.gene80865:CDS | 50.0% | |
| CGACTTTGGATCTTGCAGCT+AGG | + | chr7.4:69576759-69576778 | MS.gene80865:CDS | 50.0% | |
| CGCAACGATACAGTTTCCGA+AGG | + | chr7.4:69577745-69577764 | MS.gene80865:CDS | 50.0% | |
| CGGAAACTGTATCGTTGCGA+CGG | - | chr7.4:69577744-69577763 | None:intergenic | 50.0% | |
| GAAAGAGCTCCAAATCGCAG+TGG | - | chr7.4:69577671-69577690 | None:intergenic | 50.0% | |
| GAGCACAGACAAACCAGAGA+AGG | + | chr7.4:69577857-69577876 | MS.gene80865:CDS | 50.0% | |
| GGTTTGTCTGTGCTCTTCCT+TGG | - | chr7.4:69577852-69577871 | None:intergenic | 50.0% | |
| GTTCCCACGGTAAACAACTC+TGG | + | chr7.4:69577598-69577617 | MS.gene80865:CDS | 50.0% | |
| GTTCCCAGAGTTGTTTACCG+TGG | - | chr7.4:69577605-69577624 | None:intergenic | 50.0% | |
| TTACCTCCTTTGAGCCACAG+CGG | - | chr7.4:69577648-69577667 | None:intergenic | 50.0% | |
| ! | CATGGTAACGCTGCTGATCT+GGG | + | chr7.4:69574989-69575008 | MS.gene80865:CDS | 50.0% |
| ! | TCATGGTAACGCTGCTGATC+TGG | + | chr7.4:69574988-69575007 | MS.gene80865:CDS | 50.0% |
| ACTTTCGACGCGTCGAGGAA+CGG | + | chr7.4:69574910-69574929 | MS.gene80865:CDS | 55.0% | |
| GTACGGACAGTCGTCAGGAA+AGG | + | chr7.4:69576526-69576545 | MS.gene80865:CDS | 55.0% | |
| TACGAACCGCTGTGGCTCAA+AGG | + | chr7.4:69577639-69577658 | MS.gene80865:CDS | 55.0% | |
| TGTTGGAAGTGGCCCGACTT+TGG | + | chr7.4:69576745-69576764 | MS.gene80865:CDS | 55.0% | |
| GAACCGCTGTGGCTCAAAGG+AGG | + | chr7.4:69577642-69577661 | MS.gene80865:CDS | 60.0% | |
| GCGTCGAGGAACGGAGATTG+TGG | + | chr7.4:69574919-69574938 | MS.gene80865:CDS | 60.0% | |
| TCTGGGTACGGACAGTCGTC+AGG | + | chr7.4:69576521-69576540 | MS.gene80865:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 69574788 | 69578061 | 69574788 | ID=MS.gene80865 |
| chr7.4 | mRNA | 69574788 | 69578061 | 69574788 | ID=MS.gene80865.t1;Parent=MS.gene80865 |
| chr7.4 | exon | 69574788 | 69575068 | 69574788 | ID=MS.gene80865.t1.exon1;Parent=MS.gene80865.t1 |
| chr7.4 | CDS | 69574788 | 69575068 | 69574788 | ID=cds.MS.gene80865.t1;Parent=MS.gene80865.t1 |
| chr7.4 | exon | 69576511 | 69576547 | 69576511 | ID=MS.gene80865.t1.exon2;Parent=MS.gene80865.t1 |
| chr7.4 | CDS | 69576511 | 69576547 | 69576511 | ID=cds.MS.gene80865.t1;Parent=MS.gene80865.t1 |
| chr7.4 | exon | 69576644 | 69576880 | 69576644 | ID=MS.gene80865.t1.exon3;Parent=MS.gene80865.t1 |
| chr7.4 | CDS | 69576644 | 69576880 | 69576644 | ID=cds.MS.gene80865.t1;Parent=MS.gene80865.t1 |
| chr7.4 | exon | 69576965 | 69577012 | 69576965 | ID=MS.gene80865.t1.exon4;Parent=MS.gene80865.t1 |
| chr7.4 | CDS | 69576965 | 69577012 | 69576965 | ID=cds.MS.gene80865.t1;Parent=MS.gene80865.t1 |
| chr7.4 | exon | 69577573 | 69578061 | 69577573 | ID=MS.gene80865.t1.exon5;Parent=MS.gene80865.t1 |
| chr7.4 | CDS | 69577573 | 69578061 | 69577573 | ID=cds.MS.gene80865.t1;Parent=MS.gene80865.t1 |
| Gene Sequence |
| Protein sequence |
