AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81207

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81207.t1 MTR_5g097620 98.378 370 6 0 1 370 73 442 0.0 750
MS.gene81207.t1 MTR_8g009880 85.366 369 50 3 1 369 36 400 0.0 650
MS.gene81207.t1 MTR_4g133620 34.060 367 219 7 2 360 41 392 1.98e-64 210
MS.gene81207.t1 MTR_2g026080 33.604 369 220 9 2 362 45 396 9.70e-61 201
MS.gene81207.t1 MTR_7g051910 30.295 373 239 4 1 370 40 394 4.38e-59 196
MS.gene81207.t1 MTR_5g093520 33.994 353 202 11 3 342 54 388 2.95e-55 187
MS.gene81207.t1 MTR_3g058510 30.508 354 222 8 2 348 42 378 2.18e-50 173
MS.gene81207.t1 MTR_8g028075 29.218 243 159 6 102 339 319 553 1.92e-28 116
MS.gene81207.t1 MTR_7g117375 34.123 211 129 5 143 351 184 386 1.53e-21 95.5
MS.gene81207.t1 MTR_2g018960 28.188 149 97 3 168 310 663 807 4.92e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81207.t1 AT2G04850 69.945 366 108 2 1 365 38 402 0.0 531
MS.gene81207.t1 AT3G25290 31.944 360 224 6 1 352 43 389 2.03e-67 218
MS.gene81207.t1 AT3G25290 31.944 360 224 6 1 352 43 389 2.03e-67 218
MS.gene81207.t1 AT5G47530 32.432 370 224 7 2 367 43 390 1.35e-66 216
MS.gene81207.t1 AT4G12980 32.410 361 221 6 1 352 44 390 1.89e-66 215
MS.gene81207.t1 AT4G17280 32.500 360 220 7 2 355 50 392 1.23e-58 195
MS.gene81207.t1 AT5G35735 33.149 362 214 11 12 369 55 392 2.24e-58 195
MS.gene81207.t1 AT3G59070 30.055 366 223 11 21 370 72 420 3.31e-47 167
MS.gene81207.t1 AT3G07570 28.065 310 200 10 33 340 79 367 2.53e-30 119
MS.gene81207.t1 AT3G61750 29.508 305 192 10 33 336 11 293 2.67e-29 115
MS.gene81207.t1 AT3G61750 29.508 305 192 10 33 336 88 370 1.71e-28 115
MS.gene81207.t1 AT5G48750 28.899 218 138 4 1 216 49 251 3.62e-25 103
MS.gene81207.t1 AT5G54830 29.121 182 108 5 168 343 675 841 1.81e-13 72.4

Find 106 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACAATTTGTCCTGTATT+TGG 0.121268 5.2:+81898363 None:intergenic
TTAGGGCTTTCTACTCTTAT+TGG 0.174160 5.2:-81897574 MS.gene81207:CDS
ATTCCAAACAAGGTGGATTT+TGG 0.191207 5.2:+81898161 None:intergenic
CAAATGTTTGGTTTCATTCT+TGG 0.192480 5.2:-81897874 MS.gene81207:CDS
CCAAATTGAGTTATTGTTTA+GGG 0.198532 5.2:-81897591 MS.gene81207:CDS
CTAAACTTGTTCGTAGTATT+TGG 0.209570 5.2:+81897721 None:intergenic
GGCACTTTCATTTCACCTTC+TGG 0.215785 5.2:-81898459 MS.gene81207:CDS
CCTTCTGGTTGGGTTGGATT+TGG 0.240455 5.2:-81898444 MS.gene81207:CDS
ATGAGGAAAGAGGGACTTAT+TGG 0.256520 5.2:-81897487 MS.gene81207:CDS
GGTTACTCTTGTGTGGTTCT+TGG 0.269844 5.2:-81897667 MS.gene81207:CDS
CCCTAAACAATAACTCAATT+TGG 0.277592 5.2:+81897591 None:intergenic
AGACTTTGGCATTGTTGTTT+AGG 0.290508 5.2:-81897744 MS.gene81207:CDS
TATTGGTGTTTCCATTGCTT+TGG 0.291938 5.2:-81897557 MS.gene81207:CDS
TTGCTTTGGAGGTCAATTCT+TGG 0.293222 5.2:-81897543 MS.gene81207:CDS
AAACCAAAATCCACCTTGTT+TGG 0.312634 5.2:-81898164 MS.gene81207:CDS
GCCAAATTGAGTTATTGTTT+AGG 0.317349 5.2:-81897592 MS.gene81207:CDS
CAAATACTACGAACAAGTTT+AGG 0.331418 5.2:-81897720 MS.gene81207:CDS
GAACAATTTGTCCTGTATTT+GGG 0.335697 5.2:+81898364 None:intergenic
TGCTTTGGAGGTCAATTCTT+GGG 0.347626 5.2:-81897542 MS.gene81207:CDS
TTTCATTTCACCTTCTGGTT+GGG 0.349721 5.2:-81898454 MS.gene81207:CDS
GGAACCGTTGGGTTTGGTAT+TGG 0.355093 5.2:-81897853 MS.gene81207:CDS
CGAACAAGTTTAGGAAGTAT+TGG 0.369522 5.2:-81897711 MS.gene81207:CDS
CACAAGAGTAACCAACAAAA+TGG 0.369888 5.2:+81897677 None:intergenic
CTTTCATTTCACCTTCTGGT+TGG 0.374134 5.2:-81898455 MS.gene81207:CDS
CTTCGACACTTTCAAACATT+AGG 0.375405 5.2:-81897928 MS.gene81207:CDS
TCTTCCTCTGCAGCCATGTA+TGG 0.375881 5.2:-81898258 MS.gene81207:CDS
ATTTGTCCTGTATTTGGGTC+TGG 0.381005 5.2:+81898369 None:intergenic
ATTCTTGGAACCGTTGGGTT+TGG 0.386831 5.2:-81897859 MS.gene81207:CDS
CCTTGGAGCTTTACAGACTT+TGG 0.388748 5.2:-81897758 MS.gene81207:CDS
CATGCAGGAATACAAATGTT+TGG 0.389583 5.2:-81897886 MS.gene81207:CDS
GGCTTTGTGAATGTGTTTCA+AGG 0.390916 5.2:-81897646 MS.gene81207:CDS
ATCCACCTTGTTTGGAATAG+AGG 0.394891 5.2:-81898156 MS.gene81207:CDS
TGTTCTAAATGCAGTCTCTT+GGG 0.395962 5.2:-81897989 MS.gene81207:CDS
ATTTCACCTTCTGGTTGGGT+TGG 0.397941 5.2:-81898450 MS.gene81207:CDS
GATAGATCAATTGATGTTGT+TGG 0.401706 5.2:+81898099 None:intergenic
TGGTGTTTCCATTGCTTTGG+AGG 0.402874 5.2:-81897554 MS.gene81207:CDS
GGTTTCATTCTTGGAACCGT+TGG 0.404965 5.2:-81897865 MS.gene81207:CDS
AGTTTGGCGTAGATTTGAAT+AGG 0.407487 5.2:+81898204 None:intergenic
TTTCAAGGGTTTGAAGTGAT+TGG 0.411663 5.2:-81897631 MS.gene81207:CDS
AATAGAGGTCTTTATGTTCA+AGG 0.414486 5.2:-81898141 MS.gene81207:CDS
AATTGATGTTGTTGGATGAA+TGG 0.417188 5.2:+81898107 None:intergenic
GTGTTCTAAATGCAGTCTCT+TGG 0.422091 5.2:-81897990 MS.gene81207:CDS
CCTGTCATTTGTGGTGAAGT+AGG 0.437815 5.2:+81898414 None:intergenic
AGCCATGTATGGTGGCAAAA+TGG 0.449205 5.2:-81898247 MS.gene81207:CDS
GAAGAGAAAATGAGGAAAGA+GGG 0.453995 5.2:-81897496 MS.gene81207:CDS
GCATTAGTTCCTGTCATTTG+TGG 0.456751 5.2:+81898405 None:intergenic
TGGGTCTGGAAATGATATTA+AGG 0.460547 5.2:+81898383 None:intergenic
GAGGAGGTTGATATTATCAA+AGG 0.463777 5.2:+81898281 None:intergenic
GTTTCATTCTTGGAACCGTT+GGG 0.469923 5.2:-81897864 MS.gene81207:CDS
TACGGACTCCACAGGAAGCT+TGG 0.471361 5.2:-81897796 MS.gene81207:CDS
CTGTCATTTGTGGTGAAGTA+GGG 0.474757 5.2:+81898415 None:intergenic
AATAGGCGCACCGTTATGAA+TGG 0.475616 5.2:+81898221 None:intergenic
ACAATGTTAAGAGTGATTCA+TGG 0.475734 5.2:-81898012 MS.gene81207:CDS
GGAAGAGAAAATGAGGAAAG+AGG 0.485997 5.2:-81897497 MS.gene81207:CDS
TTGAAGTGATTGGAGCTAGT+AGG 0.487803 5.2:-81897621 MS.gene81207:CDS
TGGAGTCCGTACTCCACTCC+CGG 0.506705 5.2:+81897808 None:intergenic
AATCTAAGGAAGAGAAAATG+AGG 0.507309 5.2:-81897504 MS.gene81207:CDS
TGCTATTGAGGCTTGTTGTG+TGG 0.507444 5.2:+81898527 None:intergenic
TTGAGGCTTGTTGTGTGGGA+AGG 0.508773 5.2:+81898532 None:intergenic
CGGGAAAATGACACCGGGAG+TGG 0.512531 5.2:-81897821 MS.gene81207:CDS
TCATTTCCAGACCCAAATAC+AGG 0.515763 5.2:-81898375 MS.gene81207:CDS
TTGGTATTGGTATTCAACTC+GGG 0.521041 5.2:-81897840 MS.gene81207:CDS
TTGGAACTAGTTCTGACAAA+GGG 0.523954 5.2:-81897468 MS.gene81207:CDS
GATGTTGTTGGATGAATGGT+TGG 0.524134 5.2:+81898111 None:intergenic
ACCTGACAAAACATCAAAAG+TGG 0.524778 5.2:+81898068 None:intergenic
AGGAGGTTGATATTATCAAA+GGG 0.525788 5.2:+81898282 None:intergenic
GCTATTGAGGCTTGTTGTGT+GGG 0.533375 5.2:+81898528 None:intergenic
GCATGAGCATAGAACCATGC+AGG 0.535959 5.2:+81897904 None:intergenic
GTTCTAAATGCAGTCTCTTG+GGG 0.536425 5.2:-81897988 MS.gene81207:CDS
GCTTTGTGAATGTGTTTCAA+GGG 0.546917 5.2:-81897645 MS.gene81207:CDS
GCATGGTTCTATGCTCATGC+AGG 0.552883 5.2:-81897901 MS.gene81207:CDS
ACAGTAGTGTCAAGGATGAA+AGG 0.559256 5.2:+81898336 None:intergenic
ATGACACCGGGAGTGGAGTA+CGG 0.559817 5.2:-81897814 MS.gene81207:CDS
CACAACAAGCCTCAATAGCA+TGG 0.563316 5.2:-81898524 MS.gene81207:CDS
TTCAAACATTAGGCCCTGCA+TGG 0.563413 5.2:-81897918 MS.gene81207:CDS
TCCTCTGCAGCCATGTATGG+TGG 0.565035 5.2:-81898255 MS.gene81207:CDS
ATTCTAAGGTGGAGCTGTGA+GGG 0.567030 5.2:+81898493 None:intergenic
TTTGGTATTGGTATTCAACT+CGG 0.570897 5.2:-81897841 MS.gene81207:CDS
GCCACCATACATGGCTGCAG+AGG 0.571339 5.2:+81898254 None:intergenic
AGAATTGACCTCCAAAGCAA+TGG 0.580565 5.2:+81897546 None:intergenic
ACATGGCTGCAGAGGAAGAG+AGG 0.585108 5.2:+81898262 None:intergenic
GTGGAAAGTCCATGCTATTG+AGG 0.587691 5.2:+81898515 None:intergenic
GAGTGGAGTACGGACTCCAC+AGG 0.594153 5.2:-81897804 MS.gene81207:CDS
GAATCACTCTTAACATTGTG+AGG 0.605965 5.2:+81898016 None:intergenic
CCGCTATTCCAAGCTTCCTG+TGG 0.608097 5.2:+81897788 None:intergenic
CCACAGGAAGCTTGGAATAG+CGG 0.609878 5.2:-81897788 MS.gene81207:CDS
AAAATGGCAACCATTCATAA+CGG 0.616375 5.2:-81898231 MS.gene81207:CDS
CCAAATCCAACCCAACCAGA+AGG 0.618606 5.2:+81898444 None:intergenic
CCTACTTCACCACAAATGAC+AGG 0.618913 5.2:-81898414 MS.gene81207:CDS
AGTTCTGACAAAGGGAGTAG+TGG 0.620980 5.2:-81897460 MS.gene81207:CDS
CCAAAGTCTGTAAAGCTCCA+AGG 0.623523 5.2:+81897758 None:intergenic
GTCAGTGTGTTGAGATGATG+AGG 0.625145 5.2:+81898038 None:intergenic
CATTGTTGCTCTCTCAAATG+TGG 0.625854 5.2:+81897434 None:intergenic
TCAACTCGGGAAAATGACAC+CGG 0.627618 5.2:-81897827 MS.gene81207:CDS
CTAAGGTGGAGCTGTGAGGG+TGG 0.630452 5.2:+81898496 None:intergenic
CGTGCTGTTATCGCTCCTGT+AGG 0.634914 5.2:+81897955 None:intergenic
TCAAAGGGTTGAGAAAGAAG+TGG 0.638301 5.2:+81898297 None:intergenic
CAACTCGGGAAAATGACACC+GGG 0.644833 5.2:-81897826 MS.gene81207:CDS
ATTGGAACTAGTTCTGACAA+AGG 0.648605 5.2:-81897469 MS.gene81207:CDS
AATTCTAAGGTGGAGCTGTG+AGG 0.649749 5.2:+81898492 None:intergenic
AAAGACCTCTATTCCAAACA+AGG 0.655433 5.2:+81898151 None:intergenic
CATGAGCATAGAACCATGCA+GGG 0.659464 5.2:+81897905 None:intergenic
GACCTCTATTCCAAACAAGG+TGG 0.670337 5.2:+81898154 None:intergenic
AATACCAATACCAAACCCAA+CGG 0.681789 5.2:+81897849 None:intergenic
AAGAGTAACCAACAAAATGG+TGG 0.683274 5.2:+81897680 None:intergenic
TGGCTGCAGAGGAAGAGAGG+AGG 0.691481 5.2:+81898265 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTGTAGGAAATCTA+AGG - chr5.2:81898466-81898485 MS.gene81207:CDS 20.0%
! CCAAATTGAGTTATTGTTTA+GGG - chr5.2:81898393-81898412 MS.gene81207:CDS 25.0%
!! AAAAAAGAGTAATTCTAAGG+TGG + chr5.2:81897505-81897524 None:intergenic 25.0%
!!! ACCTTAGAATTACTCTTTTT+TGG - chr5.2:81897504-81897523 MS.gene81207:CDS 25.0%
!!! ATTCTTGGGTTATTTTTTGT+AGG - chr5.2:81898456-81898475 MS.gene81207:CDS 25.0%
AAAATGGCAACCATTCATAA+CGG - chr5.2:81897753-81897772 MS.gene81207:CDS 30.0%
AATAGAGGTCTTTATGTTCA+AGG - chr5.2:81897843-81897862 MS.gene81207:CDS 30.0%
AATCTAAGGAAGAGAAAATG+AGG - chr5.2:81898480-81898499 MS.gene81207:CDS 30.0%
AATTGATGTTGTTGGATGAA+TGG + chr5.2:81897880-81897899 None:intergenic 30.0%
ACAATGTTAAGAGTGATTCA+TGG - chr5.2:81897972-81897991 MS.gene81207:CDS 30.0%
AGAACAATTTGTCCTGTATT+TGG + chr5.2:81897624-81897643 None:intergenic 30.0%
CAAATACTACGAACAAGTTT+AGG - chr5.2:81898264-81898283 MS.gene81207:CDS 30.0%
CCCTAAACAATAACTCAATT+TGG + chr5.2:81898396-81898415 None:intergenic 30.0%
GAACAATTTGTCCTGTATTT+GGG + chr5.2:81897623-81897642 None:intergenic 30.0%
GATAGATCAATTGATGTTGT+TGG + chr5.2:81897888-81897907 None:intergenic 30.0%
GCCAAAAAAGAGTAATTCTA+AGG + chr5.2:81897508-81897527 None:intergenic 30.0%
GCCAAATTGAGTTATTGTTT+AGG - chr5.2:81898392-81898411 MS.gene81207:CDS 30.0%
! AAATCTTACCACCATTTTGT+TGG - chr5.2:81898296-81898315 MS.gene81207:CDS 30.0%
! CAAATGTTTGGTTTCATTCT+TGG - chr5.2:81898110-81898129 MS.gene81207:CDS 30.0%
! CTAAACTTGTTCGTAGTATT+TGG + chr5.2:81898266-81898285 None:intergenic 30.0%
!! AGGAGGTTGATATTATCAAA+GGG + chr5.2:81897705-81897724 None:intergenic 30.0%
!! TTTGGTATTGGTATTCAACT+CGG - chr5.2:81898143-81898162 MS.gene81207:CDS 30.0%
!!! ATTCGACTCGATTTTAAGTT+TGG + chr5.2:81897799-81897818 None:intergenic 30.0%
AAACCAAAATCCACCTTGTT+TGG - chr5.2:81897820-81897839 MS.gene81207:CDS 35.0%
AAAGACCTCTATTCCAAACA+AGG + chr5.2:81897836-81897855 None:intergenic 35.0%
AAGAGTAACCAACAAAATGG+TGG + chr5.2:81898307-81898326 None:intergenic 35.0%
AATACCAATACCAAACCCAA+CGG + chr5.2:81898138-81898157 None:intergenic 35.0%
ACCTGACAAAACATCAAAAG+TGG + chr5.2:81897919-81897938 None:intergenic 35.0%
AGTTTGGCGTAGATTTGAAT+AGG + chr5.2:81897783-81897802 None:intergenic 35.0%
CACAAGAGTAACCAACAAAA+TGG + chr5.2:81898310-81898329 None:intergenic 35.0%
CATGCAGGAATACAAATGTT+TGG - chr5.2:81898098-81898117 MS.gene81207:CDS 35.0%
CTTCGACACTTTCAAACATT+AGG - chr5.2:81898056-81898075 MS.gene81207:CDS 35.0%
GAAGAGAAAATGAGGAAAGA+GGG - chr5.2:81898488-81898507 MS.gene81207:CDS 35.0%
GAATCACTCTTAACATTGTG+AGG + chr5.2:81897971-81897990 None:intergenic 35.0%
GCTTTGTGAATGTGTTTCAA+GGG - chr5.2:81898339-81898358 MS.gene81207:CDS 35.0%
TGGGTCTGGAAATGATATTA+AGG + chr5.2:81897604-81897623 None:intergenic 35.0%
TTAGGGCTTTCTACTCTTAT+TGG - chr5.2:81898410-81898429 MS.gene81207:CDS 35.0%
! CGAACAAGTTTAGGAAGTAT+TGG - chr5.2:81898273-81898292 MS.gene81207:CDS 35.0%
! GAAGTTTTACAGTAGTGTCA+AGG + chr5.2:81897659-81897678 None:intergenic 35.0%
! TATTGGTGTTTCCATTGCTT+TGG - chr5.2:81898427-81898446 MS.gene81207:CDS 35.0%
! TGTTCTAAATGCAGTCTCTT+GGG - chr5.2:81897995-81898014 MS.gene81207:CDS 35.0%
! TTTCAAGGGTTTGAAGTGAT+TGG - chr5.2:81898353-81898372 MS.gene81207:CDS 35.0%
! TTTCATTTCACCTTCTGGTT+GGG - chr5.2:81897530-81897549 MS.gene81207:CDS 35.0%
!! AGACTTTGGCATTGTTGTTT+AGG - chr5.2:81898240-81898259 MS.gene81207:CDS 35.0%
!! ATTCCAAACAAGGTGGATTT+TGG + chr5.2:81897826-81897845 None:intergenic 35.0%
!! ATTGGAACTAGTTCTGACAA+AGG - chr5.2:81898515-81898534 MS.gene81207:CDS 35.0%
!! GAGGAGGTTGATATTATCAA+AGG + chr5.2:81897706-81897725 None:intergenic 35.0%
!! TTGGAACTAGTTCTGACAAA+GGG - chr5.2:81898516-81898535 MS.gene81207:CDS 35.0%
!! TTGGTATTGGTATTCAACTC+GGG - chr5.2:81898144-81898163 MS.gene81207:CDS 35.0%
!! TTTTGTTGGTTACTCTTGTG+TGG - chr5.2:81898310-81898329 MS.gene81207:CDS 35.0%
ACAGTAGTGTCAAGGATGAA+AGG + chr5.2:81897651-81897670 None:intergenic 40.0%
AGAATTGACCTCCAAAGCAA+TGG + chr5.2:81898441-81898460 None:intergenic 40.0%
ATGAGGAAAGAGGGACTTAT+TGG - chr5.2:81898497-81898516 MS.gene81207:CDS 40.0%
ATTTGTCCTGTATTTGGGTC+TGG + chr5.2:81897618-81897637 None:intergenic 40.0%
CTTTCATTTCACCTTCTGGT+TGG - chr5.2:81897529-81897548 MS.gene81207:CDS 40.0%
GATGTTGTTGGATGAATGGT+TGG + chr5.2:81897876-81897895 None:intergenic 40.0%
GGAAGAGAAAATGAGGAAAG+AGG - chr5.2:81898487-81898506 MS.gene81207:CDS 40.0%
GTTTCATTCTTGGAACCGTT+GGG - chr5.2:81898120-81898139 MS.gene81207:CDS 40.0%
TCAAAGGGTTGAGAAAGAAG+TGG + chr5.2:81897690-81897709 None:intergenic 40.0%
TCATTTCCAGACCCAAATAC+AGG - chr5.2:81897609-81897628 MS.gene81207:CDS 40.0%
TTGAAGTGATTGGAGCTAGT+AGG - chr5.2:81898363-81898382 MS.gene81207:CDS 40.0%
! ATCCACCTTGTTTGGAATAG+AGG - chr5.2:81897828-81897847 MS.gene81207:CDS 40.0%
! CTGTCATTTGTGGTGAAGTA+GGG + chr5.2:81897572-81897591 None:intergenic 40.0%
! GCATTAGTTCCTGTCATTTG+TGG + chr5.2:81897582-81897601 None:intergenic 40.0%
! GGCTTTGTGAATGTGTTTCA+AGG - chr5.2:81898338-81898357 MS.gene81207:CDS 40.0%
! GTGTTCTAAATGCAGTCTCT+TGG - chr5.2:81897994-81898013 MS.gene81207:CDS 40.0%
! GTTCTAAATGCAGTCTCTTG+GGG - chr5.2:81897996-81898015 MS.gene81207:CDS 40.0%
! TGGGGTATACTTTTACCTAC+AGG - chr5.2:81898014-81898033 MS.gene81207:CDS 40.0%
!! TGCTTTGGAGGTCAATTCTT+GGG - chr5.2:81898442-81898461 MS.gene81207:CDS 40.0%
!! TTGCTTTGGAGGTCAATTCT+TGG - chr5.2:81898441-81898460 MS.gene81207:CDS 40.0%
!!! GCCACTTTTGATGTTTTGTC+AGG - chr5.2:81897915-81897934 MS.gene81207:CDS 40.0%
AATAGGCGCACCGTTATGAA+TGG + chr5.2:81897766-81897785 None:intergenic 45.0%
AGCCATGTATGGTGGCAAAA+TGG - chr5.2:81897737-81897756 MS.gene81207:CDS 45.0%
ATTCTTGGAACCGTTGGGTT+TGG - chr5.2:81898125-81898144 MS.gene81207:CDS 45.0%
CACAACAAGCCTCAATAGCA+TGG - chr5.2:81897460-81897479 MS.gene81207:CDS 45.0%
CATGAGCATAGAACCATGCA+GGG + chr5.2:81898082-81898101 None:intergenic 45.0%
CCAAAGTCTGTAAAGCTCCA+AGG + chr5.2:81898229-81898248 None:intergenic 45.0%
CCTACTTCACCACAAATGAC+AGG - chr5.2:81897570-81897589 MS.gene81207:CDS 45.0%
CCTTGGAGCTTTACAGACTT+TGG - chr5.2:81898226-81898245 MS.gene81207:CDS 45.0%
GACCTCTATTCCAAACAAGG+TGG + chr5.2:81897833-81897852 None:intergenic 45.0%
GGCACTTTCATTTCACCTTC+TGG - chr5.2:81897525-81897544 MS.gene81207:CDS 45.0%
GGTTACTCTTGTGTGGTTCT+TGG - chr5.2:81898317-81898336 MS.gene81207:CDS 45.0%
GGTTTCATTCTTGGAACCGT+TGG - chr5.2:81898119-81898138 MS.gene81207:CDS 45.0%
GTCAGTGTGTTGAGATGATG+AGG + chr5.2:81897949-81897968 None:intergenic 45.0%
GTGGAAAGTCCATGCTATTG+AGG + chr5.2:81897472-81897491 None:intergenic 45.0%
TCAACTCGGGAAAATGACAC+CGG - chr5.2:81898157-81898176 MS.gene81207:CDS 45.0%
TGGTGTTTCCATTGCTTTGG+AGG - chr5.2:81898430-81898449 MS.gene81207:CDS 45.0%
TTCAAACATTAGGCCCTGCA+TGG - chr5.2:81898066-81898085 MS.gene81207:CDS 45.0%
! AGTTCTGACAAAGGGAGTAG+TGG - chr5.2:81898524-81898543 MS.gene81207:CDS 45.0%
! ATTTCACCTTCTGGTTGGGT+TGG - chr5.2:81897534-81897553 MS.gene81207:CDS 45.0%
! CCTGTCATTTGTGGTGAAGT+AGG + chr5.2:81897573-81897592 None:intergenic 45.0%
!! AATTCTAAGGTGGAGCTGTG+AGG + chr5.2:81897495-81897514 None:intergenic 45.0%
!! ATTCTAAGGTGGAGCTGTGA+GGG + chr5.2:81897494-81897513 None:intergenic 45.0%
!! GCTATTGAGGCTTGTTGTGT+GGG + chr5.2:81897459-81897478 None:intergenic 45.0%
!! TGCTATTGAGGCTTGTTGTG+TGG + chr5.2:81897460-81897479 None:intergenic 45.0%
!!! TGCCATTTTGCCACCATACA+TGG + chr5.2:81897742-81897761 None:intergenic 45.0%
CAACTCGGGAAAATGACACC+GGG - chr5.2:81898158-81898177 MS.gene81207:CDS 50.0%
CCAAATCCAACCCAACCAGA+AGG + chr5.2:81897543-81897562 None:intergenic 50.0%
CCACAGGAAGCTTGGAATAG+CGG - chr5.2:81898196-81898215 MS.gene81207:CDS 50.0%
GCATGAGCATAGAACCATGC+AGG + chr5.2:81898083-81898102 None:intergenic 50.0%
TCTTCCTCTGCAGCCATGTA+TGG - chr5.2:81897726-81897745 MS.gene81207:CDS 50.0%
! GCATGGTTCTATGCTCATGC+AGG - chr5.2:81898083-81898102 MS.gene81207:CDS 50.0%
! GGAACCGTTGGGTTTGGTAT+TGG - chr5.2:81898131-81898150 MS.gene81207:CDS 50.0%
! GGAATAGCGGTGTTTTGCCT+TGG - chr5.2:81898209-81898228 MS.gene81207:CDS 50.0%
!! CCTTCTGGTTGGGTTGGATT+TGG - chr5.2:81897540-81897559 MS.gene81207:CDS 50.0%
!! TTGAGGCTTGTTGTGTGGGA+AGG + chr5.2:81897455-81897474 None:intergenic 50.0%
ACATGGCTGCAGAGGAAGAG+AGG + chr5.2:81897725-81897744 None:intergenic 55.0%
ATGACACCGGGAGTGGAGTA+CGG - chr5.2:81898170-81898189 MS.gene81207:CDS 55.0%
CCGCTATTCCAAGCTTCCTG+TGG + chr5.2:81898199-81898218 None:intergenic 55.0%
TACGGACTCCACAGGAAGCT+TGG - chr5.2:81898188-81898207 MS.gene81207:CDS 55.0%
TCCTCTGCAGCCATGTATGG+TGG - chr5.2:81897729-81897748 MS.gene81207:CDS 55.0%
! CGTGCTGTTATCGCTCCTGT+AGG + chr5.2:81898032-81898051 None:intergenic 55.0%
CGGGAAAATGACACCGGGAG+TGG - chr5.2:81898163-81898182 MS.gene81207:CDS 60.0%
CTAAGGTGGAGCTGTGAGGG+TGG + chr5.2:81897491-81897510 None:intergenic 60.0%
GAGTGGAGTACGGACTCCAC+AGG - chr5.2:81898180-81898199 MS.gene81207:CDS 60.0%
GCCACCATACATGGCTGCAG+AGG + chr5.2:81897733-81897752 None:intergenic 60.0%
TGGAGTCCGTACTCCACTCC+CGG + chr5.2:81898179-81898198 None:intergenic 60.0%
TGGCTGCAGAGGAAGAGAGG+AGG + chr5.2:81897722-81897741 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 81897447 81898559 81897447 ID=MS.gene81207
chr5.2 mRNA 81897447 81898559 81897447 ID=MS.gene81207.t1;Parent=MS.gene81207
chr5.2 exon 81897447 81898559 81897447 ID=MS.gene81207.t1.exon1;Parent=MS.gene81207.t1
chr5.2 CDS 81897447 81898559 81897447 ID=cds.MS.gene81207.t1;Parent=MS.gene81207.t1
Gene Sequence

>MS.gene81207

ATGAACCTTCCCACACAACAAGCCTCAATAGCATGGACTTTCCACCCTCACAGCTCCACCTTAGAATTACTCTTTTTTGGCACTTTCATTTCACCTTCTGGTTGGGTTGGATTTGGCATCAACCCTACTTCACCACAAATGACAGGAACTAATGCCTTAATATCATTTCCAGACCCAAATACAGGACAAATTGTTCTTCTACCTTTCATCCTTGACACTACTGTAAAACTTCAAAAAACACCACTTCTTTCTCAACCCTTTGATAATATCAACCTCCTCTCTTCCTCTGCAGCCATGTATGGTGGCAAAATGGCAACCATTCATAACGGTGCGCCTATTCAAATCTACGCCAAACTTAAAATCGAGTCGAATAAAACCAAAATCCACCTTGTTTGGAATAGAGGTCTTTATGTTCAAGGCTACTCACCAACCATTCATCCAACAACATCAATTGATCTATCTTCTATTGCCACTTTTGATGTTTTGTCAGGTTCATCATCCTCATCATCTCAACACACTGACCTCACAATGTTAAGAGTGATTCATGGTGTTCTAAATGCAGTCTCTTGGGGTATACTTTTACCTACAGGAGCGATAACAGCACGTTATCTTCGACACTTTCAAACATTAGGCCCTGCATGGTTCTATGCTCATGCAGGAATACAAATGTTTGGTTTCATTCTTGGAACCGTTGGGTTTGGTATTGGTATTCAACTCGGGAAAATGACACCGGGAGTGGAGTACGGACTCCACAGGAAGCTTGGAATAGCGGTGTTTTGCCTTGGAGCTTTACAGACTTTGGCATTGTTGTTTAGGCCAAATACTACGAACAAGTTTAGGAAGTATTGGAAATCTTACCACCATTTTGTTGGTTACTCTTGTGTGGTTCTTGGCTTTGTGAATGTGTTTCAAGGGTTTGAAGTGATTGGAGCTAGTAGGTCTTATGCCAAATTGAGTTATTGTTTAGGGCTTTCTACTCTTATTGGTGTTTCCATTGCTTTGGAGGTCAATTCTTGGGTTATTTTTTGTAGGAAATCTAAGGAAGAGAAAATGAGGAAAGAGGGACTTATTGGAACTAGTTCTGACAAAGGGAGTAGTGGCATCCACATTTGA
Protein sequence

>MS.gene81207.t1

MNLPTQQASIAWTFHPHSSTLELLFFGTFISPSGWVGFGINPTSPQMTGTNALISFPDPNTGQIVLLPFILDTTVKLQKTPLLSQPFDNINLLSSSAAMYGGKMATIHNGAPIQIYAKLKIESNKTKIHLVWNRGLYVQGYSPTIHPTTSIDLSSIATFDVLSGSSSSSSQHTDLTMLRVIHGVLNAVSWGILLPTGAITARYLRHFQTLGPAWFYAHAGIQMFGFILGTVGFGIGIQLGKMTPGVEYGLHRKLGIAVFCLGALQTLALLFRPNTTNKFRKYWKSYHHFVGYSCVVLGFVNVFQGFEVIGASRSYAKLSYCLGLSTLIGVSIALEVNSWVIFCRKSKEEKMRKEGLIGTSSDKGSSGIHI