Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81273.t1 | AZN18352.1 | 64.9 | 410 | 134 | 5 | 6 | 409 | 17 | 422 | 3.00E-141 | 511.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81273.t1 | P10550 | 53.2 | 395 | 176 | 4 | 8 | 395 | 22 | 414 | 1.7e-113 | 411.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81273.t1 | A0A4P2UVV3 | 64.9 | 410 | 134 | 5 | 6 | 409 | 17 | 422 | 2.1e-141 | 511.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050444 | MS.gene81273 | -0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene81273 | -0.808609 | 2.85E-50 | -1.69E-46 |
| MS.gene050790 | MS.gene81273 | 0.804723 | 1.88E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene81273 | -0.805781 | 1.13E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene81273 | -0.821527 | 3.85E-53 | -1.69E-46 |
| MS.gene053776 | MS.gene81273 | 0.852797 | 3.65E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene81273 | -0.805817 | 1.11E-49 | -1.69E-46 |
| MS.gene056618 | MS.gene81273 | 0.836036 | 1.18E-56 | -1.69E-46 |
| MS.gene056898 | MS.gene81273 | -0.809369 | 1.96E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene81273 | -0.807915 | 4.00E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene81273 | -0.816962 | 4.22E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene81273 | -0.823857 | 1.11E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene81273 | -0.823904 | 1.08E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 118 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCAAAACCTAGAATTTA+TGG | 0.109705 | 5.2:-81025025 | MS.gene81273:CDS |
| TGACGACCTGATGATATTTC+TGG | 0.156965 | 5.2:+81025699 | None:intergenic |
| TTTGCACTGATCTTATAAAT+TGG | 0.170825 | 5.2:+81025633 | None:intergenic |
| TTATTGGGTGCCGCAGGTTC+AGG | 0.171160 | 5.2:+81025514 | None:intergenic |
| GATCTATTATGCTAAGAAAA+TGG | 0.185171 | 5.2:-81024566 | MS.gene81273:CDS |
| TCCCCATAAATTCTAGGTTT+TGG | 0.217948 | 5.2:+81025022 | None:intergenic |
| TTCATATGCTGCGGAGTTAA+TGG | 0.249748 | 5.2:-81024776 | MS.gene81273:CDS |
| TCCTCCATTCTCTCTGTTGA+TGG | 0.280330 | 5.2:+81025357 | None:intergenic |
| CATGCATCCCCATAAATTCT+AGG | 0.285960 | 5.2:+81025016 | None:intergenic |
| ACCGGGTTAACCATGATAAA+AGG | 0.298890 | 5.2:+81025301 | None:intergenic |
| CAGTAAGTTTGCTCCGGATT+CGG | 0.316085 | 5.2:-81025184 | MS.gene81273:CDS |
| TTTCTGGACGAACTCCTTCT+TGG | 0.326089 | 5.2:+81025715 | None:intergenic |
| ATCCTTCTCAGTAACATCTT+TGG | 0.327701 | 5.2:+81025560 | None:intergenic |
| CTCAATATCCACGCCGAATC+CGG | 0.330959 | 5.2:+81025171 | None:intergenic |
| CGCTCTGCGCTTTCCTGACA+TGG | 0.331743 | 5.2:+81024501 | None:intergenic |
| AAGATTTCTTGACCTGTTAT+TGG | 0.338392 | 5.2:+81025498 | None:intergenic |
| ATCTATTATGCTAAGAAAAT+GGG | 0.339890 | 5.2:-81024565 | MS.gene81273:CDS |
| TACCTGGTAATTTGCTATAC+TGG | 0.348828 | 5.2:+81025244 | None:intergenic |
| TTCCTGCTTTCTTCTTTCTC+TGG | 0.362542 | 5.2:+81024469 | None:intergenic |
| TTCCAAAACCTAGAATTTAT+GGG | 0.365624 | 5.2:-81025024 | MS.gene81273:CDS |
| AGATTTCTTGACCTGTTATT+GGG | 0.379785 | 5.2:+81025499 | None:intergenic |
| TTGCACTGATCTTATAAATT+GGG | 0.383366 | 5.2:+81025634 | None:intergenic |
| AACCTGCGGCACCCAATAAC+AGG | 0.388614 | 5.2:-81025510 | MS.gene81273:CDS |
| GGCTTTGGCATGTTGAGCAC+TGG | 0.398486 | 5.2:+81024433 | None:intergenic |
| CTAGGTATCAGCAGCGAAGC+AGG | 0.398639 | 5.2:-81024727 | MS.gene81273:CDS |
| TAGATGCAAGATACTTCAAT+AGG | 0.414510 | 5.2:-81024807 | MS.gene81273:CDS |
| AAAATCAGAGCACATGATAT+CGG | 0.414931 | 5.2:+81025458 | None:intergenic |
| AAATCAGAGCACATGATATC+GGG | 0.425608 | 5.2:+81025459 | None:intergenic |
| TATTGGGTGCCGCAGGTTCA+GGG | 0.427051 | 5.2:+81025515 | None:intergenic |
| CTGTATGAAAGCTTCTGCTT+TGG | 0.431920 | 5.2:+81024639 | None:intergenic |
| CTGGACGAACTCCTTCTTGG+AGG | 0.434488 | 5.2:+81025718 | None:intergenic |
| TTGGCATGTTGAGCACTGGA+GGG | 0.449534 | 5.2:+81024437 | None:intergenic |
| CCTCCATTCTCTCTGTTGAT+GGG | 0.459421 | 5.2:+81025358 | None:intergenic |
| GGAGGAATCAATGAAAGATC+AGG | 0.459615 | 5.2:-81025340 | MS.gene81273:CDS |
| TTTGGCATGTTGAGCACTGG+AGG | 0.461692 | 5.2:+81024436 | None:intergenic |
| CGCCAGAGAAAGAAGAAAGC+AGG | 0.468180 | 5.2:-81024471 | MS.gene81273:CDS |
| ACAATGGCAGAAGATCTTAC+AGG | 0.468196 | 5.2:-81025741 | MS.gene81273:CDS |
| GGCTGAGACAAGATGGAAGC+AGG | 0.470788 | 5.2:-81025085 | MS.gene81273:CDS |
| ACAGCAAGCAACACCATGTC+AGG | 0.484455 | 5.2:-81024514 | MS.gene81273:CDS |
| TATAGAGGCATCCTTGGATA+AGG | 0.486255 | 5.2:+81024597 | None:intergenic |
| AACAATCACATAAAAGAGAT+AGG | 0.486262 | 5.2:-81024667 | MS.gene81273:CDS |
| ATCCACTATAGAGGCATCCT+TGG | 0.487601 | 5.2:+81024591 | None:intergenic |
| AGTCCCATCAACAGAGAGAA+TGG | 0.491241 | 5.2:-81025361 | MS.gene81273:CDS |
| ATAGATCTTATCCACTATAG+AGG | 0.491822 | 5.2:+81024582 | None:intergenic |
| GACCTGTTATTGGGTGCCGC+AGG | 0.493175 | 5.2:+81025508 | None:intergenic |
| ATCCAAGGATGCCTCTATAG+TGG | 0.494012 | 5.2:-81024593 | MS.gene81273:CDS |
| TATGACTCAAAGTGGGTCTC+CGG | 0.494339 | 5.2:-81025400 | MS.gene81273:CDS |
| GAGATGTCAGTCAGAATGGC+GGG | 0.497279 | 5.2:+81024410 | None:intergenic |
| TGCTAAGAAAATGGGGATGA+CGG | 0.499051 | 5.2:-81024557 | MS.gene81273:CDS |
| TCTCAGCAGATTGAATGCGC+TGG | 0.500805 | 5.2:+81025056 | None:intergenic |
| CAAGATGAGGGCAGGAGGCA+AGG | 0.501259 | 5.2:+81024957 | None:intergenic |
| CTCCTGCCCTCATCTTGACA+TGG | 0.501548 | 5.2:-81024951 | MS.gene81273:CDS |
| GGCATGTTGAGCACTGGAGG+GGG | 0.505135 | 5.2:+81024439 | None:intergenic |
| TCATGTCCACTCTCGACAAT+GGG | 0.510541 | 5.2:-81024882 | MS.gene81273:CDS |
| CTCAGCAGATTGAATGCGCT+GGG | 0.511937 | 5.2:+81025057 | None:intergenic |
| AATATTCAGTAAGTTTGCTC+CGG | 0.512152 | 5.2:-81025190 | MS.gene81273:CDS |
| TCTGGTCTTGCATGTTGCCT+CGG | 0.525275 | 5.2:-81025106 | MS.gene81273:CDS |
| ATCATGTCCACTCTCGACAA+TGG | 0.525714 | 5.2:-81024883 | MS.gene81273:CDS |
| ACTATTGTTGTGACGACAGC+CGG | 0.534183 | 5.2:+81025381 | None:intergenic |
| AAGAAATCTTCCACGAGCCA+TGG | 0.537877 | 5.2:-81025485 | MS.gene81273:CDS |
| AACCATGTCAAGATGAGGGC+AGG | 0.538499 | 5.2:+81024949 | None:intergenic |
| CTGCTTTCTTCTTTCTCTGG+CGG | 0.544553 | 5.2:+81024472 | None:intergenic |
| AGGGTGATTTCACAACATAC+CGG | 0.545537 | 5.2:+81025283 | None:intergenic |
| GAATGTCAAAAGAGAGGCTG+TGG | 0.546744 | 5.2:-81024846 | MS.gene81273:CDS |
| CATAGACACCTTGCTTGTCT+CGG | 0.547843 | 5.2:+81025419 | None:intergenic |
| TTGCCTCGGCTGAGACAAGA+TGG | 0.548437 | 5.2:-81025092 | MS.gene81273:CDS |
| GTTCGTCCAGAAATATCATC+AGG | 0.551025 | 5.2:-81025705 | MS.gene81273:CDS |
| TGGCATGTTGAGCACTGGAG+GGG | 0.551409 | 5.2:+81024438 | None:intergenic |
| ACATGGTGTTGCTTGCTGTA+GGG | 0.554110 | 5.2:+81024518 | None:intergenic |
| GATCTTACAGGCCTCCAAGA+AGG | 0.554330 | 5.2:-81025729 | MS.gene81273:CDS |
| CTCCAGTATAGCAAATTACC+AGG | 0.554443 | 5.2:-81025246 | MS.gene81273:CDS |
| TTATGAGATGTCAGTCAGAA+TGG | 0.559422 | 5.2:+81024406 | None:intergenic |
| TCCAAAACCTAGAATTTATG+GGG | 0.560476 | 5.2:-81025023 | MS.gene81273:CDS |
| GGCTATTGCGAAAATGTTGA+GGG | 0.565141 | 5.2:+81024693 | None:intergenic |
| GACATGGTGTTGCTTGCTGT+AGG | 0.566174 | 5.2:+81024517 | None:intergenic |
| GACCAAAGATGTTACTGAGA+AGG | 0.571936 | 5.2:-81025562 | MS.gene81273:CDS |
| TATTATCCCATTGTCGAGAG+TGG | 0.573712 | 5.2:+81024876 | None:intergenic |
| GACACCTTGCTTGTCTCGGA+GGG | 0.580575 | 5.2:+81025423 | None:intergenic |
| AGAGGCTGTGGAAATATGCT+AGG | 0.586014 | 5.2:-81024834 | MS.gene81273:CDS |
| TGCGGAGTTAATGGCCACAT+TGG | 0.593244 | 5.2:-81024767 | MS.gene81273:CDS |
| GGGTGATTTCACAACATACC+GGG | 0.597830 | 5.2:+81025284 | None:intergenic |
| GGGGATGACGGAAACATCGA+AGG | 0.597875 | 5.2:-81024545 | MS.gene81273:CDS |
| TAGAATTTCATGTAAGTACC+TGG | 0.598736 | 5.2:+81025228 | None:intergenic |
| CAAGATGATCTCCTTATCCA+AGG | 0.599230 | 5.2:-81024608 | MS.gene81273:CDS |
| TACGTAACCATGTCAAGATG+AGG | 0.602012 | 5.2:+81024944 | None:intergenic |
| GCTGAGACAAGATGGAAGCA+GGG | 0.603307 | 5.2:-81025084 | MS.gene81273:CDS |
| TCTATTATGCTAAGAAAATG+GGG | 0.604119 | 5.2:-81024564 | MS.gene81273:CDS |
| AAGGTGTCTATGACTCAAAG+TGG | 0.611529 | 5.2:-81025408 | MS.gene81273:CDS |
| AGATGTCAGTCAGAATGGCG+GGG | 0.611934 | 5.2:+81024411 | None:intergenic |
| GCATACATAGAGATTAAACT+AGG | 0.612967 | 5.2:-81024745 | MS.gene81273:CDS |
| TGGCTATTGCGAAAATGTTG+AGG | 0.617138 | 5.2:+81024692 | None:intergenic |
| CTTCCATCTTGTCTCAGCCG+AGG | 0.617739 | 5.2:+81025089 | None:intergenic |
| CATGTCAAGATGAGGGCAGG+AGG | 0.618658 | 5.2:+81024952 | None:intergenic |
| TAGGTATCAGCAGCGAAGCA+GGG | 0.621262 | 5.2:-81024726 | MS.gene81273:CDS |
| AGTTTGCTCCGGATTCGGCG+TGG | 0.623112 | 5.2:-81025179 | MS.gene81273:CDS |
| GATGTCAGTCAGAATGGCGG+GGG | 0.623704 | 5.2:+81024412 | None:intergenic |
| AATCTCTATGTATGCCAATG+TGG | 0.626166 | 5.2:+81024753 | None:intergenic |
| TTGACATGGTTACGTATGAG+TGG | 0.627227 | 5.2:-81024937 | MS.gene81273:CDS |
| CTGAGACAAGATGGAAGCAG+GGG | 0.632833 | 5.2:-81025083 | MS.gene81273:CDS |
| ACGTAACCATGTCAAGATGA+GGG | 0.633124 | 5.2:+81024945 | None:intergenic |
| CTGGAGCGACAGAGCTACAG+AGG | 0.633597 | 5.2:+81025263 | None:intergenic |
| AGACACCTTGCTTGTCTCGG+AGG | 0.638830 | 5.2:+81025422 | None:intergenic |
| CTAGTGGAATGTCAAAAGAG+AGG | 0.640083 | 5.2:-81024852 | MS.gene81273:CDS |
| GGTGCCCTCCGAGACAAGCA+AGG | 0.640762 | 5.2:-81025427 | MS.gene81273:CDS |
| AGCTGAGCTTGCAATAGATG+AGG | 0.641496 | 5.2:-81024914 | MS.gene81273:CDS |
| TAGGTGTAGCCCTGAACCTG+CGG | 0.644190 | 5.2:-81025524 | MS.gene81273:CDS |
| AATCAGAGCACATGATATCG+GGG | 0.644863 | 5.2:+81025460 | None:intergenic |
| AGGTGTCTATGACTCAAAGT+GGG | 0.648819 | 5.2:-81025407 | MS.gene81273:CDS |
| TGAGATGTCAGTCAGAATGG+CGG | 0.662781 | 5.2:+81024409 | None:intergenic |
| GCTGCGAACTTCATATGCTG+CGG | 0.664797 | 5.2:-81024785 | MS.gene81273:CDS |
| GGGATGACGGAAACATCGAA+GGG | 0.685948 | 5.2:-81024544 | MS.gene81273:CDS |
| GACAATGGGATAATACCTAG+TGG | 0.692480 | 5.2:-81024868 | MS.gene81273:CDS |
| ATCAGAGCACATGATATCGG+GGG | 0.699203 | 5.2:+81025461 | None:intergenic |
| CCCATCAACAGAGAGAATGG+AGG | 0.699229 | 5.2:-81025358 | MS.gene81273:CDS |
| GCTATTGCGAAAATGTTGAG+GGG | 0.703807 | 5.2:+81024694 | None:intergenic |
| TGAGACAAGATGGAAGCAGG+GGG | 0.706165 | 5.2:-81025082 | MS.gene81273:CDS |
| TGGAGCGACAGAGCTACAGA+GGG | 0.719824 | 5.2:+81025264 | None:intergenic |
| CATGTCAGGAAAGCGCAGAG+CGG | 0.745987 | 5.2:-81024500 | MS.gene81273:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTATTATGCTAAGAAAAT+GGG | - | chr5.2:81025593-81025612 | MS.gene81273:CDS | 20.0% |
| ! | AACAATCACATAAAAGAGAT+AGG | - | chr5.2:81025491-81025510 | MS.gene81273:CDS | 25.0% |
| ! | CAATGAACTTATTGAAAAAC+TGG | + | chr5.2:81024569-81024588 | None:intergenic | 25.0% |
| ! | GATCTATTATGCTAAGAAAA+TGG | - | chr5.2:81025592-81025611 | MS.gene81273:CDS | 25.0% |
| ! | TCTATTATGCTAAGAAAATG+GGG | - | chr5.2:81025594-81025613 | MS.gene81273:CDS | 25.0% |
| ! | TTATAAGATCAGTGCAAAAA+AGG | - | chr5.2:81024530-81024549 | MS.gene81273:CDS | 25.0% |
| ! | TTCCAAAACCTAGAATTTAT+GGG | - | chr5.2:81025134-81025153 | MS.gene81273:CDS | 25.0% |
| ! | TTTCCAAAACCTAGAATTTA+TGG | - | chr5.2:81025133-81025152 | MS.gene81273:CDS | 25.0% |
| !! | CTATTTGTTTCCTTTTATCA+TGG | - | chr5.2:81024847-81024866 | MS.gene81273:CDS | 25.0% |
| !! | TTGCACTGATCTTATAAATT+GGG | + | chr5.2:81024527-81024546 | None:intergenic | 25.0% |
| !! | TTTGCACTGATCTTATAAAT+TGG | + | chr5.2:81024528-81024547 | None:intergenic | 25.0% |
| AAAATCAGAGCACATGATAT+CGG | + | chr5.2:81024703-81024722 | None:intergenic | 30.0% | |
| AAGATTTCTTGACCTGTTAT+TGG | + | chr5.2:81024663-81024682 | None:intergenic | 30.0% | |
| AGATTTCTTGACCTGTTATT+GGG | + | chr5.2:81024662-81024681 | None:intergenic | 30.0% | |
| ATAGATCTTATCCACTATAG+AGG | + | chr5.2:81025579-81025598 | None:intergenic | 30.0% | |
| GCATACATAGAGATTAAACT+AGG | - | chr5.2:81025413-81025432 | MS.gene81273:CDS | 30.0% | |
| TAGAATTTCATGTAAGTACC+TGG | + | chr5.2:81024933-81024952 | None:intergenic | 30.0% | |
| TAGATGCAAGATACTTCAAT+AGG | - | chr5.2:81025351-81025370 | MS.gene81273:CDS | 30.0% | |
| TCCAAAACCTAGAATTTATG+GGG | - | chr5.2:81025135-81025154 | MS.gene81273:CDS | 30.0% | |
| ! | AATATTCAGTAAGTTTGCTC+CGG | - | chr5.2:81024968-81024987 | MS.gene81273:CDS | 30.0% |
| ! | CTCTTTTATGTGATTGTTGT+TGG | + | chr5.2:81025489-81025508 | None:intergenic | 30.0% |
| !! | AAGGATATGCTTACTTTTGT+AGG | - | chr5.2:81024615-81024634 | MS.gene81273:CDS | 30.0% |
| AAATCAGAGCACATGATATC+GGG | + | chr5.2:81024702-81024721 | None:intergenic | 35.0% | |
| AATCTCTATGTATGCCAATG+TGG | + | chr5.2:81025408-81025427 | None:intergenic | 35.0% | |
| ATCCTTCTCAGTAACATCTT+TGG | + | chr5.2:81024601-81024620 | None:intergenic | 35.0% | |
| ! | TCCCCATAAATTCTAGGTTT+TGG | + | chr5.2:81025139-81025158 | None:intergenic | 35.0% |
| ! | TCCTTTTATCATGGTTAACC+CGG | - | chr5.2:81024856-81024875 | MS.gene81273:CDS | 35.0% |
| !! | TACCTGGTAATTTGCTATAC+TGG | + | chr5.2:81024917-81024936 | None:intergenic | 35.0% |
| AATCAGAGCACATGATATCG+GGG | + | chr5.2:81024701-81024720 | None:intergenic | 40.0% | |
| ACCGGGTTAACCATGATAAA+AGG | + | chr5.2:81024860-81024879 | None:intergenic | 40.0% | |
| ACGTAACCATGTCAAGATGA+GGG | + | chr5.2:81025216-81025235 | None:intergenic | 40.0% | |
| AGGGTGATTTCACAACATAC+CGG | + | chr5.2:81024878-81024897 | None:intergenic | 40.0% | |
| AGGTGTCTATGACTCAAAGT+GGG | - | chr5.2:81024751-81024770 | MS.gene81273:CDS | 40.0% | |
| CAAGATGATCTCCTTATCCA+AGG | - | chr5.2:81025550-81025569 | MS.gene81273:CDS | 40.0% | |
| CATGCATCCCCATAAATTCT+AGG | + | chr5.2:81025145-81025164 | None:intergenic | 40.0% | |
| CGTTAGAGTCAAAAACACTC+TGG | - | chr5.2:81025034-81025053 | MS.gene81273:CDS | 40.0% | |
| CTAGTGGAATGTCAAAAGAG+AGG | - | chr5.2:81025306-81025325 | MS.gene81273:CDS | 40.0% | |
| CTCCAGTATAGCAAATTACC+AGG | - | chr5.2:81024912-81024931 | MS.gene81273:CDS | 40.0% | |
| CTGTATGAAAGCTTCTGCTT+TGG | + | chr5.2:81025522-81025541 | None:intergenic | 40.0% | |
| GACAATGGGATAATACCTAG+TGG | - | chr5.2:81025290-81025309 | MS.gene81273:CDS | 40.0% | |
| GACCAAAGATGTTACTGAGA+AGG | - | chr5.2:81024596-81024615 | MS.gene81273:CDS | 40.0% | |
| GCTATTGCGAAAATGTTGAG+GGG | + | chr5.2:81025467-81025486 | None:intergenic | 40.0% | |
| GGAGGAATCAATGAAAGATC+AGG | - | chr5.2:81024818-81024837 | MS.gene81273:CDS | 40.0% | |
| GGCTATTGCGAAAATGTTGA+GGG | + | chr5.2:81025468-81025487 | None:intergenic | 40.0% | |
| GTTCGTCCAGAAATATCATC+AGG | - | chr5.2:81024453-81024472 | MS.gene81273:CDS | 40.0% | |
| TACGTAACCATGTCAAGATG+AGG | + | chr5.2:81025217-81025236 | None:intergenic | 40.0% | |
| TATTATCCCATTGTCGAGAG+TGG | + | chr5.2:81025285-81025304 | None:intergenic | 40.0% | |
| TGACGACCTGATGATATTTC+TGG | + | chr5.2:81024462-81024481 | None:intergenic | 40.0% | |
| TGCTAAGAAAATGGGGATGA+CGG | - | chr5.2:81025601-81025620 | MS.gene81273:CDS | 40.0% | |
| TGGCTATTGCGAAAATGTTG+AGG | + | chr5.2:81025469-81025488 | None:intergenic | 40.0% | |
| TTCATATGCTGCGGAGTTAA+TGG | - | chr5.2:81025382-81025401 | MS.gene81273:CDS | 40.0% | |
| TTCCTGCTTTCTTCTTTCTC+TGG | + | chr5.2:81025692-81025711 | None:intergenic | 40.0% | |
| TTGACATGGTTACGTATGAG+TGG | - | chr5.2:81025221-81025240 | MS.gene81273:CDS | 40.0% | |
| ! | AAGGTGTCTATGACTCAAAG+TGG | - | chr5.2:81024750-81024769 | MS.gene81273:CDS | 40.0% |
| ! | CTCTCTTTTGACATTCCACT+AGG | + | chr5.2:81025308-81025327 | None:intergenic | 40.0% |
| !! | TATAGAGGCATCCTTGGATA+AGG | + | chr5.2:81025564-81025583 | None:intergenic | 40.0% |
| AAGAAATCTTCCACGAGCCA+TGG | - | chr5.2:81024673-81024692 | MS.gene81273:CDS | 45.0% | |
| ACTATTGTTGTGACGACAGC+CGG | + | chr5.2:81024780-81024799 | None:intergenic | 45.0% | |
| AGAGGCTGTGGAAATATGCT+AGG | - | chr5.2:81025324-81025343 | MS.gene81273:CDS | 45.0% | |
| AGCTGAGCTTGCAATAGATG+AGG | - | chr5.2:81025244-81025263 | MS.gene81273:CDS | 45.0% | |
| AGTCCCATCAACAGAGAGAA+TGG | - | chr5.2:81024797-81024816 | MS.gene81273:CDS | 45.0% | |
| ATCAGAGCACATGATATCGG+GGG | + | chr5.2:81024700-81024719 | None:intergenic | 45.0% | |
| ATCATGTCCACTCTCGACAA+TGG | - | chr5.2:81025275-81025294 | MS.gene81273:CDS | 45.0% | |
| ATCCAAGGATGCCTCTATAG+TGG | - | chr5.2:81025565-81025584 | MS.gene81273:CDS | 45.0% | |
| CATAGACACCTTGCTTGTCT+CGG | + | chr5.2:81024742-81024761 | None:intergenic | 45.0% | |
| CCTCCATTCTCTCTGTTGAT+GGG | + | chr5.2:81024803-81024822 | None:intergenic | 45.0% | |
| CTGCTTTCTTCTTTCTCTGG+CGG | + | chr5.2:81025689-81025708 | None:intergenic | 45.0% | |
| GAATGTCAAAAGAGAGGCTG+TGG | - | chr5.2:81025312-81025331 | MS.gene81273:CDS | 45.0% | |
| GGGTGATTTCACAACATACC+GGG | + | chr5.2:81024877-81024896 | None:intergenic | 45.0% | |
| TATGACTCAAAGTGGGTCTC+CGG | - | chr5.2:81024758-81024777 | MS.gene81273:CDS | 45.0% | |
| TCATGTCCACTCTCGACAAT+GGG | - | chr5.2:81025276-81025295 | MS.gene81273:CDS | 45.0% | |
| TCCTCCATTCTCTCTGTTGA+TGG | + | chr5.2:81024804-81024823 | None:intergenic | 45.0% | |
| TTTCTGGACGAACTCCTTCT+TGG | + | chr5.2:81024446-81024465 | None:intergenic | 45.0% | |
| ! | CAGTAAGTTTGCTCCGGATT+CGG | - | chr5.2:81024974-81024993 | MS.gene81273:CDS | 45.0% |
| !! | ACATGGTGTTGCTTGCTGTA+GGG | + | chr5.2:81025643-81025662 | None:intergenic | 45.0% |
| !! | ATCCACTATAGAGGCATCCT+TGG | + | chr5.2:81025570-81025589 | None:intergenic | 45.0% |
| AACCATGTCAAGATGAGGGC+AGG | + | chr5.2:81025212-81025231 | None:intergenic | 50.0% | |
| ACAGCAAGCAACACCATGTC+AGG | - | chr5.2:81025644-81025663 | MS.gene81273:CDS | 50.0% | |
| CCCATCAACAGAGAGAATGG+AGG | - | chr5.2:81024800-81024819 | MS.gene81273:CDS | 50.0% | |
| CGCCAGAGAAAGAAGAAAGC+AGG | - | chr5.2:81025687-81025706 | MS.gene81273:CDS | 50.0% | |
| CTCAATATCCACGCCGAATC+CGG | + | chr5.2:81024990-81025009 | None:intergenic | 50.0% | |
| CTCAGCAGATTGAATGCGCT+GGG | + | chr5.2:81025104-81025123 | None:intergenic | 50.0% | |
| CTGAGACAAGATGGAAGCAG+GGG | - | chr5.2:81025075-81025094 | MS.gene81273:CDS | 50.0% | |
| GATCTTACAGGCCTCCAAGA+AGG | - | chr5.2:81024429-81024448 | MS.gene81273:CDS | 50.0% | |
| GCTGAGACAAGATGGAAGCA+GGG | - | chr5.2:81025074-81025093 | MS.gene81273:CDS | 50.0% | |
| GCTGCGAACTTCATATGCTG+CGG | - | chr5.2:81025373-81025392 | MS.gene81273:CDS | 50.0% | |
| TAGGTATCAGCAGCGAAGCA+GGG | - | chr5.2:81025432-81025451 | MS.gene81273:CDS | 50.0% | |
| TCTCAGCAGATTGAATGCGC+TGG | + | chr5.2:81025105-81025124 | None:intergenic | 50.0% | |
| TGAGACAAGATGGAAGCAGG+GGG | - | chr5.2:81025076-81025095 | MS.gene81273:CDS | 50.0% | |
| TGCGGAGTTAATGGCCACAT+TGG | - | chr5.2:81025391-81025410 | MS.gene81273:CDS | 50.0% | |
| ! | GTGCTCTGATTTTGCAGCAG+CGG | - | chr5.2:81024710-81024729 | MS.gene81273:CDS | 50.0% |
| !! | GACATGGTGTTGCTTGCTGT+AGG | + | chr5.2:81025644-81025663 | None:intergenic | 50.0% |
| !! | GGGATGACGGAAACATCGAA+GGG | - | chr5.2:81025614-81025633 | MS.gene81273:CDS | 50.0% |
| !! | TCTGGTCTTGCATGTTGCCT+CGG | - | chr5.2:81025052-81025071 | MS.gene81273:CDS | 50.0% |
| !! | TTGGCATGTTGAGCACTGGA+GGG | + | chr5.2:81025724-81025743 | None:intergenic | 50.0% |
| !! | TTTGGCATGTTGAGCACTGG+AGG | + | chr5.2:81025725-81025744 | None:intergenic | 50.0% |
| AACCTGCGGCACCCAATAAC+AGG | - | chr5.2:81024648-81024667 | MS.gene81273:CDS | 55.0% | |
| AGACACCTTGCTTGTCTCGG+AGG | + | chr5.2:81024739-81024758 | None:intergenic | 55.0% | |
| CACATGATATCGGGGGTCCA+TGG | + | chr5.2:81024693-81024712 | None:intergenic | 55.0% | |
| CATGTCAAGATGAGGGCAGG+AGG | + | chr5.2:81025209-81025228 | None:intergenic | 55.0% | |
| CTAGGTATCAGCAGCGAAGC+AGG | - | chr5.2:81025431-81025450 | MS.gene81273:CDS | 55.0% | |
| CTCCTGCCCTCATCTTGACA+TGG | - | chr5.2:81025207-81025226 | MS.gene81273:CDS | 55.0% | |
| CTGGACGAACTCCTTCTTGG+AGG | + | chr5.2:81024443-81024462 | None:intergenic | 55.0% | |
| CTTCCATCTTGTCTCAGCCG+AGG | + | chr5.2:81025072-81025091 | None:intergenic | 55.0% | |
| GACACCTTGCTTGTCTCGGA+GGG | + | chr5.2:81024738-81024757 | None:intergenic | 55.0% | |
| GGCTGAGACAAGATGGAAGC+AGG | - | chr5.2:81025073-81025092 | MS.gene81273:CDS | 55.0% | |
| TAGGTGTAGCCCTGAACCTG+CGG | - | chr5.2:81024634-81024653 | MS.gene81273:CDS | 55.0% | |
| TGGAGCGACAGAGCTACAGA+GGG | + | chr5.2:81024897-81024916 | None:intergenic | 55.0% | |
| TTGCCTCGGCTGAGACAAGA+TGG | - | chr5.2:81025066-81025085 | MS.gene81273:CDS | 55.0% | |
| ! | CATGTCAGGAAAGCGCAGAG+CGG | - | chr5.2:81025658-81025677 | MS.gene81273:CDS | 55.0% |
| ! | GGCTTTGGCATGTTGAGCAC+TGG | + | chr5.2:81025728-81025747 | None:intergenic | 55.0% |
| ! | TATTGGGTGCCGCAGGTTCA+GGG | + | chr5.2:81024646-81024665 | None:intergenic | 55.0% |
| ! | TTATTGGGTGCCGCAGGTTC+AGG | + | chr5.2:81024647-81024666 | None:intergenic | 55.0% |
| !! | GGGGATGACGGAAACATCGA+AGG | - | chr5.2:81025613-81025632 | MS.gene81273:CDS | 55.0% |
| !! | TGGCATGTTGAGCACTGGAG+GGG | + | chr5.2:81025723-81025742 | None:intergenic | 55.0% |
| CAAGATGAGGGCAGGAGGCA+AGG | + | chr5.2:81025204-81025223 | None:intergenic | 60.0% | |
| CGCTCTGCGCTTTCCTGACA+TGG | + | chr5.2:81025660-81025679 | None:intergenic | 60.0% | |
| CTGGAGCGACAGAGCTACAG+AGG | + | chr5.2:81024898-81024917 | None:intergenic | 60.0% | |
| ! | AGTTTGCTCCGGATTCGGCG+TGG | - | chr5.2:81024979-81024998 | MS.gene81273:CDS | 60.0% |
| ! | GACCTGTTATTGGGTGCCGC+AGG | + | chr5.2:81024653-81024672 | None:intergenic | 60.0% |
| !! | GGCATGTTGAGCACTGGAGG+GGG | + | chr5.2:81025722-81025741 | None:intergenic | 60.0% |
| GGTGCCCTCCGAGACAAGCA+AGG | - | chr5.2:81024731-81024750 | MS.gene81273:CDS | 65.0% | |
| TATCGGGGGTCCATGGCTCG+TGG | + | chr5.2:81024686-81024705 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 81024420 | 81025760 | 81024420 | ID=MS.gene81273 |
| chr5.2 | mRNA | 81024420 | 81025760 | 81024420 | ID=MS.gene81273.t1;Parent=MS.gene81273 |
| chr5.2 | exon | 81024420 | 81025760 | 81024420 | ID=MS.gene81273.t1.exon1;Parent=MS.gene81273.t1 |
| chr5.2 | CDS | 81024420 | 81025760 | 81024420 | ID=cds.MS.gene81273.t1;Parent=MS.gene81273.t1 |
| Gene Sequence |
| Protein sequence |
