AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060762


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060762.t1 MTR_4g032670 99.459 185 1 0 15 199 140 324 6.79e-126 358
MS.gene060762.t1 MTR_4g117280 38.732 142 87 0 13 154 41 182 1.09e-21 90.1
MS.gene060762.t1 MTR_4g117280 38.732 142 87 0 13 154 61 202 1.73e-21 89.7
MS.gene060762.t1 MTR_2g022180 36.842 190 111 3 13 198 41 225 2.49e-19 83.6
MS.gene060762.t1 MTR_2g028450 33.835 133 82 3 26 154 148 278 3.74e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060762.t1 AT1G22850 84.456 193 30 0 4 196 135 327 5.34e-101 295
MS.gene060762.t1 AT1G22850 85.276 163 24 0 4 166 135 297 9.70e-93 273
MS.gene060762.t1 AT1G03260 38.732 142 87 0 13 154 43 184 1.63e-24 97.4
MS.gene060762.t1 AT5G19070 35.638 188 118 3 13 199 41 226 2.73e-18 80.9
MS.gene060762.t1 AT5G19070 41.259 143 82 2 13 154 41 182 4.89e-17 76.6
MS.gene060762.t1 AT4G22850 31.088 193 124 6 11 198 93 281 5.48e-13 66.6
MS.gene060762.t1 AT2G02370 25.714 175 121 5 34 201 114 286 3.92e-12 64.3
MS.gene060762.t1 AT2G02370 25.714 175 121 5 34 201 114 286 3.92e-12 64.3
MS.gene060762.t1 AT2G02370 25.714 175 121 5 34 201 114 286 3.92e-12 64.3
MS.gene060762.t1 AT4G22850 31.293 147 91 4 37 175 118 262 1.13e-11 62.8

Find 54 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTGGGGAATTATTTATA+TGG 0.194134 4.4:-71183047 MS.gene060762:CDS
GACAAAGCAATTGGAGAAAA+TGG 0.205274 4.4:-71183116 MS.gene060762:CDS
CTAACCTTTCTTCACTATTT+CGG 0.215564 4.4:+71184675 None:intergenic
TAACCTTTCTTCACTATTTC+GGG 0.219243 4.4:+71184676 None:intergenic
TATGTTAGTGCTGGTGCTTT+TGG 0.309524 4.4:-71182436 MS.gene060762:CDS
AAATAATTCCCCAAAGAAAA+TGG 0.331770 4.4:+71183053 None:intergenic
GACGCTTGGGCTGGGACTCT+TGG 0.334788 4.4:-71179574 MS.gene060762:CDS
TAAGTTTCTTCCGTATGTAT+TGG 0.364297 4.4:-71183012 MS.gene060762:CDS
CTTGCTATTGACAAAGCAAT+TGG 0.371123 4.4:-71183125 MS.gene060762:CDS
CTAACATAAGCCCATGTTCC+TGG 0.376453 4.4:+71182451 None:intergenic
TAATTGTCATGCAGTTGGTT+GGG 0.376962 4.4:-71182481 MS.gene060762:intron
CTTTGGGGAATTATTTATAT+GGG 0.384365 4.4:-71183046 MS.gene060762:CDS
AAGTTTCTTCCGTATGTATT+GGG 0.384665 4.4:-71183011 MS.gene060762:CDS
TCAGCTGCTGACGCTTGGGC+TGG 0.387503 4.4:-71179583 MS.gene060762:CDS
CAGCTGCTGACGCTTGGGCT+GGG 0.387875 4.4:-71179582 MS.gene060762:CDS
AGTTGGTTGGGGATGCTTCC+AGG 0.390286 4.4:-71182469 MS.gene060762:CDS
AACAATCAGCTGCTGACGCT+TGG 0.399885 4.4:-71179588 MS.gene060762:CDS
AAGTCCAGCTGACATGGTTA+AGG 0.404811 4.4:+71183907 None:intergenic
TGGGGATGCTTCCAGGAACA+TGG 0.413941 4.4:-71182462 MS.gene060762:CDS
TGAGCGTATTCTAAAATTAG+TGG 0.427699 4.4:-71183165 MS.gene060762:CDS
AGCTACAAACAATGCATATC+CGG 0.432842 4.4:+71184165 None:intergenic
ACAATCAGCTGCTGACGCTT+GGG 0.440714 4.4:-71179587 MS.gene060762:CDS
TTGTTTGTAGCTGTTTATGC+TGG 0.458819 4.4:-71184154 MS.gene060762:CDS
CCCAAAGAAAATGGCAGCAA+AGG 0.469203 4.4:+71183062 None:intergenic
GCAAAGGGCTCAAACGAAGC+AGG 0.470966 4.4:+71183078 None:intergenic
AATTGGAGAAAATGGCTTCA+AGG 0.475664 4.4:-71183108 MS.gene060762:CDS
AGTCCAGCTGACATGGTTAA+GGG 0.477591 4.4:+71183908 None:intergenic
AGACTATGATAGTGCCGGTA+AGG 0.477903 4.4:+71183873 None:intergenic
TGTAGCTGTTTATGCTGGAT+TGG 0.479159 4.4:-71184149 MS.gene060762:CDS
GAATCTGAACTTAGTTCACT+TGG 0.487591 4.4:-71179615 MS.gene060762:CDS
ATAATTGTCATGCAGTTGGT+TGG 0.507926 4.4:-71182482 MS.gene060762:intron
AGCTGTTTATGCTGGATTGG+AGG 0.512844 4.4:-71184146 MS.gene060762:intron
CCAAAGAAAATGGCAGCAAA+GGG 0.517038 4.4:+71183063 None:intergenic
GACATGGTTAAGGGAATGGC+AGG 0.519492 4.4:+71183917 None:intergenic
GGGGATGCTTCCAGGAACAT+GGG 0.521976 4.4:-71182461 MS.gene060762:CDS
CGTATTCTAAAATTAGTGGA+AGG 0.529552 4.4:-71183161 MS.gene060762:CDS
AATTGTCATGCAGTTGGTTG+GGG 0.530827 4.4:-71182480 MS.gene060762:intron
TTCTTCCGTATGTATTGGGA+AGG 0.534079 4.4:-71183007 MS.gene060762:intron
AGCTGACATGGTTAAGGGAA+TGG 0.534868 4.4:+71183913 None:intergenic
CATAGACAACGTAACATTTG+TGG 0.537083 4.4:+71184699 None:intergenic
TGAACAGGTTATGGTTCAGC+CGG 0.540756 4.4:-71184184 MS.gene060762:intron
GACTATGATAGTGCCGGTAA+GGG 0.543748 4.4:+71183874 None:intergenic
ATTCCCTTAACCATGTCAGC+TGG 0.547784 4.4:-71183911 MS.gene060762:CDS
TCTGAACTTAGTTCACTTGG+AGG 0.551989 4.4:-71179612 MS.gene060762:CDS
ATGCCCGAAATAGTGAAGAA+AGG 0.575215 4.4:-71184679 MS.gene060762:intron
ACATGGGCTTATGTTAGTGC+TGG 0.583860 4.4:-71182445 MS.gene060762:CDS
CCATACCTTCCCAATACATA+CGG 0.584626 4.4:+71183002 None:intergenic
GATAGAGACTATGATAGTGC+CGG 0.590119 4.4:+71183868 None:intergenic
AGGGAATGGCAGGAATTGCA+AGG 0.618635 4.4:+71183927 None:intergenic
CAAAGGGCTCAAACGAAGCA+GGG 0.626668 4.4:+71183079 None:intergenic
ATATGTCACAAAGCTTGCAA+AGG 0.632352 4.4:-71179532 MS.gene060762:intron
GTATTCTAAAATTAGTGGAA+GGG 0.647848 4.4:-71183160 MS.gene060762:CDS
ACTATCATAGTCTCTATCAG+TGG 0.670984 4.4:-71183863 MS.gene060762:CDS
ATATGTAGCAGCTAATGCAG+TGG 0.688625 4.4:+71179551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAAAAAATAAAATTTTT+TGG - chr4.4:71184341-71184360 MS.gene060762:intron 0.0%
!!! TTATTTTTTATTTTTAAATT+GGG + chr4.4:71184334-71184353 None:intergenic 0.0%
!!! TTTATTTTTTATTTTTAAAT+TGG + chr4.4:71184335-71184354 None:intergenic 0.0%
!! AATTGAAGTTAAAAATAAAT+TGG + chr4.4:71181619-71181638 None:intergenic 10.0%
!! TAAAAAAAATTATATTTCTC+AGG - chr4.4:71181331-71181350 MS.gene060762:intron 10.0%
!! TATTTGTAATATTCAATAAT+AGG - chr4.4:71184692-71184711 MS.gene060762:CDS 10.0%
!!! AATTTATTTTTAACTTCAAT+TGG - chr4.4:71181618-71181637 MS.gene060762:intron 10.0%
!!! ATTTTGAATCTAATATTTTA+AGG - chr4.4:71180920-71180939 MS.gene060762:intron 10.0%
!! AAAAAAAAAATGTGAAACTT+TGG + chr4.4:71181423-71181442 None:intergenic 15.0%
!! TAAATACATGTTCTTTAATT+AGG + chr4.4:71184674-71184693 None:intergenic 15.0%
!!! AAAAAGAAATTCTTTTATGA+GGG - chr4.4:71184103-71184122 MS.gene060762:intron 15.0%
!!! AAGTATAATTTTTTTGTTAC+CGG - chr4.4:71180872-71180891 MS.gene060762:intron 15.0%
!!! TAAAAAGAAATTCTTTTATG+AGG - chr4.4:71184102-71184121 MS.gene060762:intron 15.0%
!!! TATTTAAGACATCTAAAATT+TGG - chr4.4:71180500-71180519 MS.gene060762:intron 15.0%
!!! TTTTTTATTGATTACAAAGA+AGG - chr4.4:71181437-71181456 MS.gene060762:intron 15.0%
!! AAACAATTTCAAGATTCAAA+AGG + chr4.4:71181227-71181246 None:intergenic 20.0%
!! AATGCAATTAAGAATGAAAT+TGG - chr4.4:71181554-71181573 MS.gene060762:intron 20.0%
!! AGACATTTAGTAAATTTCAA+AGG - chr4.4:71183412-71183431 MS.gene060762:intron 20.0%
!! ATAATGTTTCAATCTAACTT+TGG - chr4.4:71180188-71180207 MS.gene060762:intron 20.0%
!! ATATCATAGAATTCTGTTAT+AGG - chr4.4:71184064-71184083 MS.gene060762:intron 20.0%
!! ATGATAAGAGTTTAATTAAG+TGG - chr4.4:71179911-71179930 MS.gene060762:intron 20.0%
!! ATGCAATTAAGAATGAAATT+GGG - chr4.4:71181555-71181574 MS.gene060762:intron 20.0%
!! ATTGAAACATTATGAATCAA+GGG + chr4.4:71180181-71180200 None:intergenic 20.0%
!! ATTGAAATTGTGTTTATAAG+TGG - chr4.4:71182274-71182293 MS.gene060762:intron 20.0%
!! TGATAAGAGTTTAATTAAGT+GGG - chr4.4:71179912-71179931 MS.gene060762:intron 20.0%
!! TGTTTCTTTGTAAATATTAC+TGG - chr4.4:71181959-71181978 MS.gene060762:intron 20.0%
!!! AATCAAAGTGAAGATATTTT+GGG + chr4.4:71181470-71181489 None:intergenic 20.0%
!!! ATGTGTTAGTTTTTAGAAAT+TGG - chr4.4:71182916-71182935 MS.gene060762:intron 20.0%
!!! TATATGAATTTTGCATATTC+TGG + chr4.4:71180390-71180409 None:intergenic 20.0%
!!! TTTTATTTTTAAATTGGGGA+AGG + chr4.4:71184329-71184348 None:intergenic 20.0%
! AAACATTTGTGAAACTGTTT+GGG + chr4.4:71180800-71180819 None:intergenic 25.0%
! AAATAATTCCCCAAAGAAAA+TGG + chr4.4:71181110-71181129 None:intergenic 25.0%
! AAATTGTGTTTATAAGTGGT+GGG - chr4.4:71182278-71182297 MS.gene060762:intron 25.0%
! AAGCATCAGTTATATTAAAG+AGG + chr4.4:71184508-71184527 None:intergenic 25.0%
! AATAAAACATTCTAAACCTG+GGG + chr4.4:71183938-71183957 None:intergenic 25.0%
! ACAATAAAACATTCTAAACC+TGG + chr4.4:71183940-71183959 None:intergenic 25.0%
! ATTGATTGCATGAACTATAA+AGG - chr4.4:71180423-71180442 MS.gene060762:intron 25.0%
! CAATAAAACATTCTAAACCT+GGG + chr4.4:71183939-71183958 None:intergenic 25.0%
! CACATTTAGTATCTATTAAC+CGG + chr4.4:71180894-71180913 None:intergenic 25.0%
! CATGTTCTTTAATTAGGATA+TGG + chr4.4:71184668-71184687 None:intergenic 25.0%
! CATTACAAAGGATAAAACTA+TGG - chr4.4:71183729-71183748 MS.gene060762:intron 25.0%
! CATTTAGTAAATTTCAAAGG+TGG - chr4.4:71183415-71183434 MS.gene060762:intron 25.0%
! CTACATTCAACAGATAATAA+GGG + chr4.4:71179685-71179704 None:intergenic 25.0%
! GAAAGAATATATGAAGCTAA+TGG + chr4.4:71181848-71181867 None:intergenic 25.0%
! GAACTATAAGAAAGATTTGA+AGG + chr4.4:71180363-71180382 None:intergenic 25.0%
! GATTGAAACATTATGAATCA+AGG + chr4.4:71180182-71180201 None:intergenic 25.0%
! TAAACATTTGTGAAACTGTT+TGG + chr4.4:71180801-71180820 None:intergenic 25.0%
! TAATTTGACCAAGAATTGTT+TGG - chr4.4:71182680-71182699 MS.gene060762:intron 25.0%
! TAGATGTCTTAAATATTGAC+AGG + chr4.4:71180495-71180514 None:intergenic 25.0%
! TCTACATTCAACAGATAATA+AGG + chr4.4:71179686-71179705 None:intergenic 25.0%
! TCTTACAAAAACAGTTTGTA+AGG + chr4.4:71182488-71182507 None:intergenic 25.0%
! TGAATCTTGAAATTGTTTCA+AGG - chr4.4:71181229-71181248 MS.gene060762:intron 25.0%
! TGTATAATGTATGTCTATGT+TGG - chr4.4:71182202-71182221 MS.gene060762:intron 25.0%
! TTAATTAGGATATGGAAAAC+AGG + chr4.4:71184660-71184679 None:intergenic 25.0%
! TTGGATATGCATTAAAAACT+GGG + chr4.4:71183600-71183619 None:intergenic 25.0%
! TTTGGATATGCATTAAAAAC+TGG + chr4.4:71183601-71183620 None:intergenic 25.0%
!! AAAAAAGTTATGGTAATGTG+GGG - chr4.4:71182062-71182081 MS.gene060762:intron 25.0%
!! ATTAGTTTCTATCAAACACA+TGG - chr4.4:71182123-71182142 MS.gene060762:intron 25.0%
!! CTTTGGGGAATTATTTATAT+GGG - chr4.4:71181114-71181133 MS.gene060762:intron 25.0%
!! GAAAAAAGTTATGGTAATGT+GGG - chr4.4:71182061-71182080 MS.gene060762:intron 25.0%
!! GAATCAAAGTGAAGATATTT+TGG + chr4.4:71181471-71181490 None:intergenic 25.0%
!! TCAGGAATGTTTTCAAAATT+TGG - chr4.4:71181349-71181368 MS.gene060762:intron 25.0%
!! TCTTTGGGGAATTATTTATA+TGG - chr4.4:71181113-71181132 MS.gene060762:intron 25.0%
!! TTTTTACCAAATACATGAGT+AGG + chr4.4:71181317-71181336 None:intergenic 25.0%
!!! AATGAGGTTTTCTAAAATTC+TGG - chr4.4:71183440-71183459 MS.gene060762:intron 25.0%
!!! ATAGTCAAATCCTTTTTAAG+AGG - chr4.4:71183225-71183244 MS.gene060762:intron 25.0%
!!! CACTCTTTTTTTTTTTTGAG+AGG - chr4.4:71183036-71183055 MS.gene060762:CDS 25.0%
!!! CTAATATTTTAAGGCTTTGT+AGG - chr4.4:71180929-71180948 MS.gene060762:intron 25.0%
!!! GCTCAATTCAAATTTTAAGA+TGG - chr4.4:71182342-71182361 MS.gene060762:intron 25.0%
!!! GTATTCTAAAATTAGTGGAA+GGG - chr4.4:71181000-71181019 MS.gene060762:intron 25.0%
!!! TTTTCAAAATTTGGTAATCG+AGG - chr4.4:71181358-71181377 MS.gene060762:intron 25.0%
!!! TTTTTTTTTTGAGAGGTTCA+GGG - chr4.4:71183043-71183062 MS.gene060762:CDS 25.0%
!!! TTTTTTTTTTTGAGAGGTTC+AGG - chr4.4:71183042-71183061 MS.gene060762:CDS 25.0%
AAATATTACTGGAATTGTCC+TGG - chr4.4:71181970-71181989 MS.gene060762:intron 30.0%
AACATTCCTACTCATGTATT+TGG - chr4.4:71181308-71181327 MS.gene060762:intron 30.0%
AAGTTATGTATGAGTTGTTG+AGG + chr4.4:71179887-71179906 None:intergenic 30.0%
AAGTTTCTTCCGTATGTATT+GGG - chr4.4:71181149-71181168 MS.gene060762:intron 30.0%
ACAAATAATTGTCATGCAGT+TGG - chr4.4:71181674-71181693 MS.gene060762:intron 30.0%
ACAAGTACATTAGAAGTGAT+TGG - chr4.4:71180536-71180555 MS.gene060762:intron 30.0%
ACATAGAAAGGATGAAAAGA+AGG + chr4.4:71181872-71181891 None:intergenic 30.0%
ACATGAGTTTCACCTAATAA+GGG - chr4.4:71179816-71179835 MS.gene060762:intron 30.0%
ACGAATGAATCTTTCTAACA+TGG + chr4.4:71184483-71184502 None:intergenic 30.0%
AGAATATATGAAGCTAATGG+AGG + chr4.4:71181845-71181864 None:intergenic 30.0%
AGGCTTGAAATTACATTACT+TGG - chr4.4:71181249-71181268 MS.gene060762:intron 30.0%
ATAAATGAGTTAGACTAGAC+AGG - chr4.4:71182789-71182808 MS.gene060762:intron 30.0%
ATAGAATCAACTTGTCTTCA+AGG + chr4.4:71183849-71183868 None:intergenic 30.0%
ATAGCAGATTGATGAGTTTA+TGG - chr4.4:71182537-71182556 MS.gene060762:intron 30.0%
ATAGGAAACTACTAATTGCA+GGG - chr4.4:71183633-71183652 MS.gene060762:intron 30.0%
CAAGCATGCAAAAAATATCA+GGG + chr4.4:71181784-71181803 None:intergenic 30.0%
CAATGAAAATCAGTACGAAT+TGG + chr4.4:71181203-71181222 None:intergenic 30.0%
CATAAGCTCTTATATATAGC+TGG - chr4.4:71179632-71179651 MS.gene060762:intron 30.0%
CTAACCTTTCTTCACTATTT+CGG + chr4.4:71179488-71179507 None:intergenic 30.0%
GAAAAGCTGGAAAAAAGTTA+TGG - chr4.4:71182052-71182071 MS.gene060762:intron 30.0%
GAAATTGTGTTTATAAGTGG+TGG - chr4.4:71182277-71182296 MS.gene060762:intron 30.0%
GAACATCTAGAAACAACTTA+TGG + chr4.4:71180776-71180795 None:intergenic 30.0%
GAATATATGAAGCTAATGGA+GGG + chr4.4:71181844-71181863 None:intergenic 30.0%
GTAACTAATGTAGCATTTGA+AGG - chr4.4:71180115-71180134 MS.gene060762:intron 30.0%
TAAATGAGTTAGACTAGACA+GGG - chr4.4:71182790-71182809 MS.gene060762:intron 30.0%
TAACCTTTCTTCACTATTTC+GGG + chr4.4:71179487-71179506 None:intergenic 30.0%
TAAGTTTCTTCCGTATGTAT+TGG - chr4.4:71181148-71181167 MS.gene060762:intron 30.0%
TATACCTATACTCAGCTTAA+TGG + chr4.4:71183185-71183204 None:intergenic 30.0%
TCAAGCATGCAAAAAATATC+AGG + chr4.4:71181785-71181804 None:intergenic 30.0%
TCAATCCAAACAGACTTAAA+TGG - chr4.4:71180845-71180864 MS.gene060762:intron 30.0%
TCCAAACTTAAATGTGACAT+AGG - chr4.4:71183615-71183634 MS.gene060762:intron 30.0%
TCTGACATTACTTACAAGTT+AGG - chr4.4:71179514-71179533 MS.gene060762:intron 30.0%
TTACGCAAAGATATATCACA+TGG + chr4.4:71180099-71180118 None:intergenic 30.0%
TTATTTGGTAAAGCTCATGT+AGG - chr4.4:71179750-71179769 MS.gene060762:intron 30.0%
TTCACAAAACACACATAGAA+AGG + chr4.4:71181884-71181903 None:intergenic 30.0%
TTGGACTATTTAACGTCATA+TGG - chr4.4:71180559-71180578 MS.gene060762:intron 30.0%
! AAAAAGTTATGGTAATGTGG+GGG - chr4.4:71182063-71182082 MS.gene060762:intron 30.0%
! AATCTGCTATGTAACTCTTT+TGG + chr4.4:71182527-71182546 None:intergenic 30.0%
! ATCTGCTATGTAACTCTTTT+GGG + chr4.4:71182526-71182545 None:intergenic 30.0%
! GGAAAAAAGTTATGGTAATG+TGG - chr4.4:71182060-71182079 MS.gene060762:intron 30.0%
! TACTGACTAATAGTTGGAAT+AGG - chr4.4:71183912-71183931 MS.gene060762:CDS 30.0%
! TATCTGTTCTTTTGATGAAC+AGG - chr4.4:71179961-71179980 MS.gene060762:intron 30.0%
! TCCTATGTCACATTTAAGTT+TGG + chr4.4:71183619-71183638 None:intergenic 30.0%
! TTCTTTTGATGAACAGGTTA+TGG - chr4.4:71179967-71179986 MS.gene060762:intron 30.0%
! TTTCCTTTTGCCGAAATAAA+AGG - chr4.4:71182030-71182049 MS.gene060762:intron 30.0%
!! CGTATTCTAAAATTAGTGGA+AGG - chr4.4:71180999-71181018 MS.gene060762:intron 30.0%
!! TATTTTTAAATTGGGGAAGG+AGG + chr4.4:71184326-71184345 None:intergenic 30.0%
!! TCCAGCTTTTCCTTTTATTT+CGG + chr4.4:71182043-71182062 None:intergenic 30.0%
!! TGAGCGTATTCTAAAATTAG+TGG - chr4.4:71180995-71181014 MS.gene060762:intron 30.0%
!! TTTCCTTTTATTTCGGCAAA+AGG + chr4.4:71182036-71182055 None:intergenic 30.0%
!!! ATATTTTAAGGCTTTGTAGG+TGG - chr4.4:71180932-71180951 MS.gene060762:intron 30.0%
!!! GATATAGATGACCTTTTTTG+TGG - chr4.4:71182812-71182831 MS.gene060762:intron 30.0%
AATTGGAGAAAATGGCTTCA+AGG - chr4.4:71181052-71181071 MS.gene060762:intron 35.0%
AATTTCAAAGGTGGAGAATG+AGG - chr4.4:71183424-71183443 MS.gene060762:intron 35.0%
ACGTTTATTAGGTAGGTATG+CGG - chr4.4:71183093-71183112 MS.gene060762:CDS 35.0%
ACTATCATAGTCTCTATCAG+TGG - chr4.4:71180297-71180316 MS.gene060762:intron 35.0%
AGCTACAAACAATGCATATC+CGG + chr4.4:71179998-71180017 None:intergenic 35.0%
AGCTTGACCTTGTATTCTTT+AGG - chr4.4:71184231-71184250 MS.gene060762:intron 35.0%
ATAATTGTCATGCAGTTGGT+TGG - chr4.4:71181678-71181697 MS.gene060762:intron 35.0%
ATAGAGAATTAGATGACGTG+TGG + chr4.4:71179942-71179961 None:intergenic 35.0%
ATATGTCACAAAGCTTGCAA+AGG - chr4.4:71184628-71184647 MS.gene060762:intron 35.0%
ATCAACCAAGTGTTATCTGA+TGG + chr4.4:71184439-71184458 None:intergenic 35.0%
ATCTGTCCCTAAAGAATACA+AGG + chr4.4:71184241-71184260 None:intergenic 35.0%
ATGAGTAGGAATGTTATTCC+TGG + chr4.4:71181303-71181322 None:intergenic 35.0%
ATTCTGTTATAGGAGAGAGA+TGG - chr4.4:71184074-71184093 MS.gene060762:intron 35.0%
CATAGACAACGTAACATTTG+TGG + chr4.4:71179464-71179483 None:intergenic 35.0%
CATAGGAAACTACTAATTGC+AGG - chr4.4:71183632-71183651 MS.gene060762:intron 35.0%
CTAACTCATCTCAACAAAAC+CGG + chr4.4:71182322-71182341 None:intergenic 35.0%
CTCATAGCAGCCATATAATT+GGG - chr4.4:71183149-71183168 MS.gene060762:CDS 35.0%
CTTATTTCCATAAGCTCTCT+AGG + chr4.4:71180731-71180750 None:intergenic 35.0%
GAAATATGTCCCACATAAAG+TGG + chr4.4:71179781-71179800 None:intergenic 35.0%
GAATCTGAACTTAGTTCACT+TGG - chr4.4:71184545-71184564 MS.gene060762:intron 35.0%
GAATGATCTTTCTGTTGTTG+AGG - chr4.4:71182621-71182640 MS.gene060762:intron 35.0%
GACAAAGCAATTGGAGAAAA+TGG - chr4.4:71181044-71181063 MS.gene060762:intron 35.0%
GACATGAGTTTCACCTAATA+AGG - chr4.4:71179815-71179834 MS.gene060762:intron 35.0%
GACATTACTTACAAGTTAGG+AGG - chr4.4:71179517-71179536 MS.gene060762:intron 35.0%
GACATTCTTGTCAAAGAGTT+TGG - chr4.4:71179559-71179578 MS.gene060762:CDS 35.0%
GACTATTGAGATATGCAAAG+TGG + chr4.4:71183211-71183230 None:intergenic 35.0%
GCTTGACCTTGTATTCTTTA+GGG - chr4.4:71184232-71184251 MS.gene060762:intron 35.0%
GGACATATTTCTTAAGTGTG+GGG - chr4.4:71179790-71179809 MS.gene060762:intron 35.0%
GGGAAAAGACAATAACAATC+TGG + chr4.4:71184160-71184179 None:intergenic 35.0%
GGGAAAAGTAAGCATTACAA+AGG - chr4.4:71183717-71183736 MS.gene060762:intron 35.0%
GGGACATATTTCTTAAGTGT+GGG - chr4.4:71179789-71179808 MS.gene060762:intron 35.0%
GGTTTCATTAGTTAGAAAGC+AGG + chr4.4:71183281-71183300 None:intergenic 35.0%
GTACATTAGAAGTGATTGGT+TGG - chr4.4:71180540-71180559 MS.gene060762:intron 35.0%
GTTGTGAACGTTTATTAGGT+AGG - chr4.4:71183086-71183105 MS.gene060762:CDS 35.0%
TAAGGTTTCATGAAATTGCC+AGG + chr4.4:71181991-71182010 None:intergenic 35.0%
TAATGTAGCATTTGAAGGAC+AGG - chr4.4:71180120-71180139 MS.gene060762:intron 35.0%
TAATTGTCATGCAGTTGGTT+GGG - chr4.4:71181679-71181698 MS.gene060762:intron 35.0%
TAGGAAACTACTAATTGCAG+GGG - chr4.4:71183634-71183653 MS.gene060762:intron 35.0%
TCAACCAAGTGTTATCTGAT+GGG + chr4.4:71184438-71184457 None:intergenic 35.0%
TCACTCCATTTAAGTCTGTT+TGG + chr4.4:71180853-71180872 None:intergenic 35.0%
TCCAAAAAACTGACATCACA+TGG + chr4.4:71184208-71184227 None:intergenic 35.0%
TCTTCACTTTGATTCATCAG+AGG - chr4.4:71181476-71181495 MS.gene060762:intron 35.0%
TGGGACATATTTCTTAAGTG+TGG - chr4.4:71179788-71179807 MS.gene060762:intron 35.0%
TTAAGCTAGTTACCCAAACA+AGG + chr4.4:71180585-71180604 None:intergenic 35.0%
TTGGAAAGGGTCATGAAAAT+GGG + chr4.4:71183515-71183534 None:intergenic 35.0%
TTGTTTGTAGCTGTTTATGC+TGG - chr4.4:71180006-71180025 MS.gene060762:intron 35.0%
TTTGGAAAGGGTCATGAAAA+TGG + chr4.4:71183516-71183535 None:intergenic 35.0%
! GTCTTTTCCCTGTAATAAAC+TGG - chr4.4:71184170-71184189 MS.gene060762:CDS 35.0%
! TCATGACCCTTTCCAAATTT+TGG - chr4.4:71183519-71183538 MS.gene060762:intron 35.0%
! TCCTTCTTTTCAATACTGCT+TGG - chr4.4:71180058-71180077 MS.gene060762:intron 35.0%
! TTTACCAAATAAGAGAGTGC+TGG + chr4.4:71179742-71179761 None:intergenic 35.0%
! TTTTCCAGCACTCTCTTATT+TGG - chr4.4:71179735-71179754 MS.gene060762:intron 35.0%
!! AATAAGAGAGTGCTGGAAAA+AGG + chr4.4:71179735-71179754 None:intergenic 35.0%
!! AGACAAGTTGATTCTATAGC+AGG - chr4.4:71183852-71183871 MS.gene060762:intron 35.0%
!! ATAAGAGAGTGCTGGAAAAA+GGG + chr4.4:71179734-71179753 None:intergenic 35.0%
!! CGTTGTTTCTAATGCAATTC+AGG - chr4.4:71184380-71184399 MS.gene060762:intron 35.0%
!! CTTGCTATTGACAAAGCAAT+TGG - chr4.4:71181035-71181054 MS.gene060762:intron 35.0%
!!! TCCATGTGATGTCAGTTTTT+TGG - chr4.4:71184204-71184223 MS.gene060762:intron 35.0%
AAAAAGAAGTCCAGCTGACA+TGG + chr4.4:71180262-71180281 None:intergenic 40.0%
AAATTCTCGAGTCCTTTGGT+AGG + chr4.4:71183576-71183595 None:intergenic 40.0%
AACTGCTGCCAGTTTATTAC+AGG + chr4.4:71184181-71184200 None:intergenic 40.0%
AAGCTTAGGCATAAAGCAAC+TGG + chr4.4:71182731-71182750 None:intergenic 40.0%
AATTGTCATGCAGTTGGTTG+GGG - chr4.4:71181680-71181699 MS.gene060762:intron 40.0%
ACATCAGATGAGAAATGTGG+TGG - chr4.4:71182452-71182471 MS.gene060762:CDS 40.0%
ACCACATTTCTCATCTGATG+TGG + chr4.4:71182453-71182472 None:intergenic 40.0%
ACTAACACATCTTCCTGAAC+AGG + chr4.4:71182906-71182925 None:intergenic 40.0%
ACTCTGGCCAAAATTTGGAA+AGG + chr4.4:71183529-71183548 None:intergenic 40.0%
ACTGCTGCCAGTTTATTACA+GGG + chr4.4:71184180-71184199 None:intergenic 40.0%
AGCCATATAATTGGGCACAT+CGG - chr4.4:71183157-71183176 MS.gene060762:CDS 40.0%
AGGAAACTACTAATTGCAGG+GGG - chr4.4:71183635-71183654 MS.gene060762:intron 40.0%
ATATAGCTGGTGTATGTTGC+AGG - chr4.4:71179645-71179664 MS.gene060762:intron 40.0%
ATATGTAGCAGCTAATGCAG+TGG + chr4.4:71184612-71184631 None:intergenic 40.0%
ATATGTCCCACATAAAGTGG+TGG + chr4.4:71179778-71179797 None:intergenic 40.0%
ATGACTCTACAGGAATGCAA+TGG + chr4.4:71183007-71183026 None:intergenic 40.0%
ATGCCCGAAATAGTGAAGAA+AGG - chr4.4:71179481-71179500 MS.gene060762:intron 40.0%
ATTCCTGGAAATCACACTCA+TGG + chr4.4:71181288-71181307 None:intergenic 40.0%
CAATGGATCTTGGATAGACT+CGG + chr4.4:71182371-71182390 None:intergenic 40.0%
CAGTGACACATCCACAAAAA+AGG + chr4.4:71182826-71182845 None:intergenic 40.0%
CATCAGATGAGAAATGTGGT+GGG - chr4.4:71182453-71182472 MS.gene060762:CDS 40.0%
CATGAGGACTGACTGAAAAT+TGG - chr4.4:71183486-71183505 MS.gene060762:intron 40.0%
CATTAGTTAGAAAGCAGGTC+AGG + chr4.4:71183276-71183295 None:intergenic 40.0%
CATTCCTGTAGAGTCATTCA+GGG - chr4.4:71183010-71183029 MS.gene060762:CDS 40.0%
CCAAAGAAAATGGCAGCAAA+GGG + chr4.4:71181100-71181119 None:intergenic 40.0%
CCAATTATATGGCTGCTATG+AGG + chr4.4:71183151-71183170 None:intergenic 40.0%
CCACATTTCTCATCTGATGT+GGG + chr4.4:71182452-71182471 None:intergenic 40.0%
CCATACCTTCCCAATACATA+CGG + chr4.4:71181161-71181180 None:intergenic 40.0%
CCTCAGAGACAGTTGTAAAA+TGG - chr4.4:71184269-71184288 MS.gene060762:intron 40.0%
CCTCATAGCAGCCATATAAT+TGG - chr4.4:71183148-71183167 MS.gene060762:CDS 40.0%
CTAACACATCTTCCTGAACA+GGG + chr4.4:71182905-71182924 None:intergenic 40.0%
CTAACACTCACTCCCTTATT+AGG + chr4.4:71179831-71179850 None:intergenic 40.0%
CTATGTTCTCACTCTCTTGT+TGG - chr4.4:71182652-71182671 MS.gene060762:intron 40.0%
CTCGGTTGAAAATGTCACAT+AGG - chr4.4:71183783-71183802 MS.gene060762:intron 40.0%
CTCTAACTCTGGCCAAAATT+TGG + chr4.4:71183534-71183553 None:intergenic 40.0%
CTCTGGCCAAAATTTGGAAA+GGG + chr4.4:71183528-71183547 None:intergenic 40.0%
CTGTACACGTCCTCTTAAAA+AGG + chr4.4:71183238-71183257 None:intergenic 40.0%
CTTACCAAAAGTCCAGGTTT+AGG - chr4.4:71182007-71182026 MS.gene060762:intron 40.0%
GAAGTACGAGATGGTGATAA+AGG - chr4.4:71181901-71181920 MS.gene060762:intron 40.0%
GAGTCTATCCAAGATCCATT+GGG - chr4.4:71182370-71182389 MS.gene060762:intron 40.0%
GATCAATTGGAAAGACAGCT+CGG - chr4.4:71183765-71183784 MS.gene060762:intron 40.0%
GCCGAAATAAAAGGAAAAGC+TGG - chr4.4:71182039-71182058 MS.gene060762:intron 40.0%
GCTCAGTTCAAAGAGCAAAA+TGG + chr4.4:71184416-71184435 None:intergenic 40.0%
GCTGGTTGTGAACGTTTATT+AGG - chr4.4:71183082-71183101 MS.gene060762:CDS 40.0%
GCTTTATGCCTAAGCTTCTT+TGG - chr4.4:71182734-71182753 MS.gene060762:intron 40.0%
GGTTGAAAATGTCACATAGG+AGG - chr4.4:71183786-71183805 MS.gene060762:intron 40.0%
GTACAAGCTTAACCTACCAA+AGG - chr4.4:71183561-71183580 MS.gene060762:intron 40.0%
GTACCTCTCTATTTGAGTCA+GGG + chr4.4:71183380-71183399 None:intergenic 40.0%
GTGAGTGTTAGAGTGAACAA+TGG - chr4.4:71179840-71179859 MS.gene060762:intron 40.0%
GTTGCTTACATCCTGTCTAT+GGG - chr4.4:71182559-71182578 MS.gene060762:intron 40.0%
TAATCCAGCCAAAGAAGCTT+AGG + chr4.4:71182745-71182764 None:intergenic 40.0%
TACCTCTCTATTTGAGTCAG+GGG + chr4.4:71183379-71183398 None:intergenic 40.0%
TATGTCCCACATAAAGTGGT+GGG + chr4.4:71179777-71179796 None:intergenic 40.0%
TATTGTTAGCGATCGTGAAG+TGG - chr4.4:71183878-71183897 MS.gene060762:CDS 40.0%
TCCAACTATTAGTCAGTAGC+TGG + chr4.4:71183910-71183929 None:intergenic 40.0%
TCTGAACTTAGTTCACTTGG+AGG - chr4.4:71184548-71184567 MS.gene060762:intron 40.0%
TGAAACCTTACCAAAAGTCC+AGG - chr4.4:71182001-71182020 MS.gene060762:intron 40.0%
TGTACCTCTCTATTTGAGTC+AGG + chr4.4:71183381-71183400 None:intergenic 40.0%
TGTAGCTGTTTATGCTGGAT+TGG - chr4.4:71180011-71180030 MS.gene060762:intron 40.0%
TTCTTCCGTATGTATTGGGA+AGG - chr4.4:71181153-71181172 MS.gene060762:intron 40.0%
TTGACCAAGAATTGTTTGGC+AGG - chr4.4:71182684-71182703 MS.gene060762:intron 40.0%
TTGTCTTCAAGGCTGAACTT+CGG + chr4.4:71183838-71183857 None:intergenic 40.0%
! ATGTCAGCTGGACTTCTTTT+TGG - chr4.4:71180261-71180280 MS.gene060762:intron 40.0%
! CAATTTTCAGTCAGTCCTCA+TGG + chr4.4:71183488-71183507 None:intergenic 40.0%
! CCATTTTACAACTGTCTCTG+AGG + chr4.4:71184272-71184291 None:intergenic 40.0%
! CTAAACCTGGACTTTTGGTA+AGG + chr4.4:71182009-71182028 None:intergenic 40.0%
! CTTCTTTTTGGATCCCTTAC+CGG - chr4.4:71180273-71180292 MS.gene060762:intron 40.0%
! GAAACCTAAACCTGGACTTT+TGG + chr4.4:71182014-71182033 None:intergenic 40.0%
! GATAGAGACTATGATAGTGC+CGG + chr4.4:71180295-71180314 None:intergenic 40.0%
! GCCAAGCAGTATTGAAAAGA+AGG + chr4.4:71180062-71180081 None:intergenic 40.0%
! GTGTTTTGTGAAGTACGAGA+TGG - chr4.4:71181892-71181911 MS.gene060762:intron 40.0%
! TTCTTTTATGAGGGAACCAC+TGG - chr4.4:71184112-71184131 MS.gene060762:intron 40.0%
! TTTCCATAAGCTCTCTAGGA+TGG + chr4.4:71180727-71180746 None:intergenic 40.0%
! TTTGACATCTAGAGTGTGAC+CGG + chr4.4:71182401-71182420 None:intergenic 40.0%
!! AAAAGAGTGCTGAGTTGACA+AGG - chr4.4:71183979-71183998 MS.gene060762:intron 40.0%
!! AAAGAGTGCTGAGTTGACAA+GGG - chr4.4:71183980-71183999 MS.gene060762:intron 40.0%
!! AACGTCATATGGCCTTGTTT+GGG - chr4.4:71180570-71180589 MS.gene060762:intron 40.0%
!! AATTTTGGCCAGAGTTAGAG+AGG - chr4.4:71183534-71183553 MS.gene060762:intron 40.0%
!! ACTTTTCCCAGAACTGGTTT+AGG + chr4.4:71183706-71183725 None:intergenic 40.0%
!! ATGCTTACTTTTCCCAGAAC+TGG + chr4.4:71183712-71183731 None:intergenic 40.0%
!! TAACGTCATATGGCCTTGTT+TGG - chr4.4:71180569-71180588 MS.gene060762:intron 40.0%
!!! CCTTTGCTGCCATTTTCTTT+GGG - chr4.4:71181098-71181117 MS.gene060762:intron 40.0%
!!! CGGTTTTGTTGAGATGAGTT+AGG - chr4.4:71182320-71182339 MS.gene060762:intron 40.0%
!!! CTTTGCTGCCATTTTCTTTG+GGG - chr4.4:71181099-71181118 MS.gene060762:intron 40.0%
!!! CTTTTTTGTGGATGTGTCAC+TGG - chr4.4:71182824-71182843 MS.gene060762:intron 40.0%
!!! TATGTTAGTGCTGGTGCTTT+TGG - chr4.4:71181724-71181743 MS.gene060762:intron 40.0%
!!! TTTTAAGGCTTTGTAGGTGG+CGG - chr4.4:71180935-71180954 MS.gene060762:intron 40.0%
AACAGGGCCATCATCAGAAA+CGG + chr4.4:71182889-71182908 None:intergenic 45.0%
AAGTCCAGCTGACATGGTTA+AGG + chr4.4:71180256-71180275 None:intergenic 45.0%
ACATGGGCTTATGTTAGTGC+TGG - chr4.4:71181715-71181734 MS.gene060762:intron 45.0%
ACCCGATGTGCCCAATTATA+TGG + chr4.4:71183162-71183181 None:intergenic 45.0%
AGCTGACATGGTTAAGGGAA+TGG + chr4.4:71180250-71180269 None:intergenic 45.0%
AGTCCAGCTGACATGGTTAA+GGG + chr4.4:71180255-71180274 None:intergenic 45.0%
ATTAGACCAAAGGTCAGAGG+GGG - chr4.4:71182761-71182780 MS.gene060762:intron 45.0%
ATTCCCTTAACCATGTCAGC+TGG - chr4.4:71180249-71180268 MS.gene060762:intron 45.0%
CAAGAATTGTTTGGCAGGTC+TGG - chr4.4:71182689-71182708 MS.gene060762:intron 45.0%
CACACTCTAGATGTCAAACC+CGG - chr4.4:71182403-71182422 MS.gene060762:intron 45.0%
CAGACCTGCCAAACAATTCT+TGG + chr4.4:71182691-71182710 None:intergenic 45.0%
CAGGAATGCAATGGAACTCT+TGG + chr4.4:71182998-71183017 None:intergenic 45.0%
CCCAAAGAAAATGGCAGCAA+AGG + chr4.4:71181101-71181120 None:intergenic 45.0%
CCCACATCAGATGAGAAATG+TGG - chr4.4:71182449-71182468 MS.gene060762:CDS 45.0%
CCGTATGTATTGGGAAGGTA+TGG - chr4.4:71181158-71181177 MS.gene060762:intron 45.0%
CGAGTCTATCCAAGATCCAT+TGG - chr4.4:71182369-71182388 MS.gene060762:intron 45.0%
CTAACATAAGCCCATGTTCC+TGG + chr4.4:71181712-71181731 None:intergenic 45.0%
GAGTCAGGGGCTTAGTTATT+TGG + chr4.4:71183366-71183385 None:intergenic 45.0%
GATTAGACCAAAGGTCAGAG+GGG - chr4.4:71182760-71182779 MS.gene060762:intron 45.0%
GCAATTGTCACCTTACAAGC+CGG - chr4.4:71182300-71182319 MS.gene060762:intron 45.0%
GCATTCCTGTAGAGTCATTC+AGG - chr4.4:71183009-71183028 MS.gene060762:CDS 45.0%
GCCATATAATTGGGCACATC+GGG - chr4.4:71183158-71183177 MS.gene060762:CDS 45.0%
GCTATGAGGCAAAGTAGCAT+AGG + chr4.4:71183137-71183156 None:intergenic 45.0%
GGATTAGACCAAAGGTCAGA+GGG - chr4.4:71182759-71182778 MS.gene060762:intron 45.0%
GGCAAAAGGAAACCTAAACC+TGG + chr4.4:71182022-71182041 None:intergenic 45.0%
GGCTGGAGTTAGTTGTATCA+GGG - chr4.4:71184021-71184040 MS.gene060762:intron 45.0%
GGGTAAATTCTCGAGTCCTT+TGG + chr4.4:71183580-71183599 None:intergenic 45.0%
GGGTCCATTAAGCTGAGTAT+AGG - chr4.4:71183178-71183197 MS.gene060762:CDS 45.0%
GGTTGCTTACATCCTGTCTA+TGG - chr4.4:71182558-71182577 MS.gene060762:intron 45.0%
GTACTACACCTCTCTAACTC+TGG + chr4.4:71183545-71183564 None:intergenic 45.0%
GTTAAACTTCCAGCTACCCA+TGG + chr4.4:71183666-71183685 None:intergenic 45.0%
GTTAGAAAGCAGGTCAGGTT+TGG + chr4.4:71183271-71183290 None:intergenic 45.0%
TAATAGTTGGAATAGGCCCC+AGG - chr4.4:71183919-71183938 MS.gene060762:CDS 45.0%
TAGCCATCCTAGAGAGCTTA+TGG - chr4.4:71180721-71180740 MS.gene060762:intron 45.0%
TAGCGATCGTGAAGTGGAAT+GGG - chr4.4:71183884-71183903 MS.gene060762:CDS 45.0%
TAGGTCCCACCACTTTATGT+GGG - chr4.4:71179769-71179788 MS.gene060762:intron 45.0%
TATGCCTAAGCTTCTTTGGC+TGG - chr4.4:71182738-71182757 MS.gene060762:intron 45.0%
TCTCCATGAGTGTGATTTCC+AGG - chr4.4:71181282-71181301 MS.gene060762:intron 45.0%
TCTGTTGAGAAGTCTCGCAT+TGG - chr4.4:71182240-71182259 MS.gene060762:intron 45.0%
TGAAACCAAAGTTGCTGCTG+TGG - chr4.4:71183294-71183313 MS.gene060762:intron 45.0%
TGAACAGGTTATGGTTCAGC+CGG - chr4.4:71179976-71179995 MS.gene060762:intron 45.0%
TGAGCCCATCAGATAACACT+TGG - chr4.4:71184431-71184450 MS.gene060762:intron 45.0%
TGGCTGGAGTTAGTTGTATC+AGG - chr4.4:71184020-71184039 MS.gene060762:intron 45.0%
TGTCTTCAAGGCTGAACTTC+GGG + chr4.4:71183837-71183856 None:intergenic 45.0%
TTAGCGATCGTGAAGTGGAA+TGG - chr4.4:71183883-71183902 MS.gene060762:CDS 45.0%
TTAGGCTCAGCATCAGATTC+AGG + chr4.4:71183688-71183707 None:intergenic 45.0%
! AGCTGTTTATGCTGGATTGG+AGG - chr4.4:71180014-71180033 MS.gene060762:intron 45.0%
! CTTTGGCTGGATTAGACCAA+AGG - chr4.4:71182751-71182770 MS.gene060762:intron 45.0%
! GCAGGTCTGGTATCGAATAT+GGG - chr4.4:71182702-71182721 MS.gene060762:intron 45.0%
! GCCAGCTACTGACTAATAGT+TGG - chr4.4:71183906-71183925 MS.gene060762:CDS 45.0%
! GGTGCGAGATCAGAATGTTT+TGG - chr4.4:71182144-71182163 MS.gene060762:intron 45.0%
! GTTATTTGGAGCACGAGTTG+TGG + chr4.4:71183352-71183371 None:intergenic 45.0%
! TGGATTAGACCAAAGGTCAG+AGG - chr4.4:71182758-71182777 MS.gene060762:intron 45.0%
! TTGACATCTAGAGTGTGACC+GGG + chr4.4:71182400-71182419 None:intergenic 45.0%
!! AGACTATGATAGTGCCGGTA+AGG + chr4.4:71180290-71180309 None:intergenic 45.0%
!! CTCAACAAAACCGGCTTGTA+AGG + chr4.4:71182313-71182332 None:intergenic 45.0%
!! GACTATGATAGTGCCGGTAA+GGG + chr4.4:71180289-71180308 None:intergenic 45.0%
!!! CCCTTTGCTGCCATTTTCTT+TGG - chr4.4:71181097-71181116 MS.gene060762:intron 45.0%
!! AATTTAAATAAATCTATAAA+AGG + chr4.4:71182091-71182110 None:intergenic 5.0%
!! TTTATAGATTTATTTAAATT+AGG - chr4.4:71182091-71182110 MS.gene060762:intron 5.0%
!!! TATTTTTTATTTTTAAATTG+GGG + chr4.4:71184333-71184352 None:intergenic 5.0%
AACAATCAGCTGCTGACGCT+TGG - chr4.4:71184572-71184591 MS.gene060762:intron 50.0%
ACAATCAGCTGCTGACGCTT+GGG - chr4.4:71184573-71184592 MS.gene060762:intron 50.0%
ACTCTAGATGTCAAACCCGG+TGG - chr4.4:71182406-71182425 MS.gene060762:intron 50.0%
AGAAAGCAGGTCAGGTTTGG+TGG + chr4.4:71183268-71183287 None:intergenic 50.0%
AGCCCCTGACTCAAATAGAG+AGG - chr4.4:71183374-71183393 MS.gene060762:intron 50.0%
AGGGAATGGCAGGAATTGCA+AGG + chr4.4:71180236-71180255 None:intergenic 50.0%
AGTATATCAGCCCAAGCCAG+TGG + chr4.4:71184131-71184150 None:intergenic 50.0%
ATGTCAAACCCGGTGGTGAT+GGG - chr4.4:71182413-71182432 MS.gene060762:intron 50.0%
CAAAGGGCTCAAACGAAGCA+GGG + chr4.4:71181084-71181103 None:intergenic 50.0%
CTGAACTTCGGGAACTGGTT+AGG + chr4.4:71183826-71183845 None:intergenic 50.0%
GACATGGTTAAGGGAATGGC+AGG + chr4.4:71180246-71180265 None:intergenic 50.0%
GCTGAGCCTAAACCAGTTCT+GGG - chr4.4:71183697-71183716 MS.gene060762:intron 50.0%
GGACAGACCGTTTCTGATGA+TGG - chr4.4:71182879-71182898 MS.gene060762:intron 50.0%
GGCAGGAATTGCAAGGATCT+GGG + chr4.4:71180229-71180248 None:intergenic 50.0%
GGCTACACTCTTAAAGCTGC+TGG - chr4.4:71183064-71183083 MS.gene060762:CDS 50.0%
GTAGCCCTGAATGACTCTAC+AGG + chr4.4:71183017-71183036 None:intergenic 50.0%
GTAGGTCCCACCACTTTATG+TGG - chr4.4:71179768-71179787 MS.gene060762:intron 50.0%
TGCTGAGCCTAAACCAGTTC+TGG - chr4.4:71183696-71183715 MS.gene060762:intron 50.0%
TGGCAGGAATTGCAAGGATC+TGG + chr4.4:71180230-71180249 None:intergenic 50.0%
TTGGAGCACGAGTTGTGGAA+TGG + chr4.4:71183347-71183366 None:intergenic 50.0%
! GGATGTGTCACTGGCGAAAA+AGG - chr4.4:71182833-71182852 MS.gene060762:intron 50.0%
! GGCAGGTCTGGTATCGAATA+TGG - chr4.4:71182701-71182720 MS.gene060762:intron 50.0%
! TGACATCTAGAGTGTGACCG+GGG + chr4.4:71182399-71182418 None:intergenic 50.0%
! TTATGAGGGAACCACTGGCT+TGG - chr4.4:71184117-71184136 MS.gene060762:intron 50.0%
!! TATGAGGGAACCACTGGCTT+GGG - chr4.4:71184118-71184137 MS.gene060762:intron 50.0%
!! TTCTGATGATGGCCCTGTTC+AGG - chr4.4:71182890-71182909 MS.gene060762:intron 50.0%
AAGCGCCACAGCAGCAACTT+TGG + chr4.4:71183302-71183321 None:intergenic 55.0%
ACGTCACTGTCCTACTCCAG+AGG + chr4.4:71182595-71182614 None:intergenic 55.0%
AGTTGGTTGGGGATGCTTCC+AGG - chr4.4:71181691-71181710 MS.gene060762:intron 55.0%
CAAGGCTGAACTTCGGGAAC+TGG + chr4.4:71183831-71183850 None:intergenic 55.0%
CGTCACTGTCCTACTCCAGA+GGG + chr4.4:71182594-71182613 None:intergenic 55.0%
CTCAACACACCCATCACCAC+CGG + chr4.4:71182425-71182444 None:intergenic 55.0%
GATGTCAAACCCGGTGGTGA+TGG - chr4.4:71182412-71182431 MS.gene060762:intron 55.0%
GCAAAGGGCTCAAACGAAGC+AGG + chr4.4:71181085-71181104 None:intergenic 55.0%
GCACCAGACTGCTGTCTATG+AGG + chr4.4:71183466-71183485 None:intergenic 55.0%
GGACGTCATCACCCATAGAC+AGG + chr4.4:71182573-71182592 None:intergenic 55.0%
GGCAGAGAAGTGACATTGGC+TGG - chr4.4:71184004-71184023 MS.gene060762:intron 55.0%
GGGAGGCAGAGAAGTGACAT+TGG - chr4.4:71184000-71184019 MS.gene060762:intron 55.0%
GGGGATGCTTCCAGGAACAT+GGG - chr4.4:71181699-71181718 MS.gene060762:intron 55.0%
TCAACACACCCATCACCACC+GGG + chr4.4:71182424-71182443 None:intergenic 55.0%
TGGCCTCATAGACAGCAGTC+TGG - chr4.4:71183460-71183479 MS.gene060762:intron 55.0%
TGGGGATGCTTCCAGGAACA+TGG - chr4.4:71181698-71181717 MS.gene060762:intron 55.0%
TTCCACGTGCTCTTGCACAC+TGG - chr4.4:71182858-71182877 MS.gene060762:intron 55.0%
! TATGGGTGATGACGTCCCTC+TGG - chr4.4:71182576-71182595 MS.gene060762:intron 55.0%
!! AATTGCAGGGGGTGTTGCCA+TGG - chr4.4:71183646-71183665 MS.gene060762:intron 55.0%
!! ATTGCAGGGGGTGTTGCCAT+GGG - chr4.4:71183647-71183666 MS.gene060762:intron 55.0%
!! GAGTGCTGAGTTGACAAGGG+AGG - chr4.4:71183983-71184002 MS.gene060762:intron 55.0%
!! TGATGACGTCCCTCTGGAGT+AGG - chr4.4:71182582-71182601 MS.gene060762:intron 55.0%
ACCAAAGGTCAGAGGGGGAC+AGG - chr4.4:71182766-71182785 MS.gene060762:intron 60.0%
CAAGATCCATTGGGCCACCC+CGG - chr4.4:71182379-71182398 MS.gene060762:intron 60.0%
TCCTGTCCCCCTCTGACCTT+TGG + chr4.4:71182770-71182789 None:intergenic 60.0%
! CATCTAGAGTGTGACCGGGG+TGG + chr4.4:71182396-71182415 None:intergenic 60.0%
! GTCCAGTGTGCAAGAGCACG+TGG + chr4.4:71182863-71182882 None:intergenic 60.0%
!! GACAGCAGTCTGGTGCCATG+AGG - chr4.4:71183470-71183489 MS.gene060762:intron 60.0%
CAGCTGCTGACGCTTGGGCT+GGG - chr4.4:71184578-71184597 MS.gene060762:intron 65.0%
CGGGGTGGCCCAATGGATCT+TGG + chr4.4:71182381-71182400 None:intergenic 65.0%
TCAGCTGCTGACGCTTGGGC+TGG - chr4.4:71184577-71184596 MS.gene060762:intron 65.0%
! GACGCTTGGGCTGGGACTCT+TGG - chr4.4:71184586-71184605 MS.gene060762:intron 65.0%
!! GGGGTGTTGCCATGGGTAGC+TGG - chr4.4:71183654-71183673 MS.gene060762:intron 65.0%
GTGTGACCGGGGTGGCCCAA+TGG + chr4.4:71182388-71182407 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 71179457 71184725 71179457 ID=MS.gene060762
chr4.4 mRNA 71179457 71184725 71179457 ID=MS.gene060762.t1;Parent=MS.gene060762
chr4.4 exon 71184680 71184725 71184680 ID=MS.gene060762.t1.exon1;Parent=MS.gene060762.t1
chr4.4 CDS 71184680 71184725 71184680 ID=cds.MS.gene060762.t1;Parent=MS.gene060762.t1
chr4.4 exon 71184147 71184199 71184147 ID=MS.gene060762.t1.exon2;Parent=MS.gene060762.t1
chr4.4 CDS 71184147 71184199 71184147 ID=cds.MS.gene060762.t1;Parent=MS.gene060762.t1
chr4.4 exon 71183859 71183951 71183859 ID=MS.gene060762.t1.exon3;Parent=MS.gene060762.t1
chr4.4 CDS 71183859 71183951 71183859 ID=cds.MS.gene060762.t1;Parent=MS.gene060762.t1
chr4.4 exon 71183008 71183231 71183008 ID=MS.gene060762.t1.exon4;Parent=MS.gene060762.t1
chr4.4 CDS 71183008 71183231 71183008 ID=cds.MS.gene060762.t1;Parent=MS.gene060762.t1
chr4.4 exon 71182423 71182489 71182423 ID=MS.gene060762.t1.exon5;Parent=MS.gene060762.t1
chr4.4 CDS 71182423 71182489 71182423 ID=cds.MS.gene060762.t1;Parent=MS.gene060762.t1
chr4.4 exon 71179533 71179643 71179533 ID=MS.gene060762.t1.exon6;Parent=MS.gene060762.t1
chr4.4 CDS 71179533 71179643 71179533 ID=cds.MS.gene060762.t1;Parent=MS.gene060762.t1
chr4.4 exon 71179457 71179468 71179457 ID=MS.gene060762.t1.exon7;Parent=MS.gene060762.t1
chr4.4 CDS 71179457 71179468 71179457 ID=cds.MS.gene060762.t1;Parent=MS.gene060762.t1
Gene Sequence

>MS.gene060762

ATGGCCACAAATGTTACGTTGTCTATGCCCGAAATAGTGAAGAAAGGTTAGTCACAATCTGACATTACTTACAAGTTAGGAGGATTCAAACAACTCATTACTGACATTCTTGTCAAAGAGTTTGGAAGAACTTATAAAAATGAATTGCGAGATATTCAAAAACTTAATATATTTTCATAAGCTCTTATATATAGCTGGTGTATGTTGCAGGTTCTGCAAAAGTTTCCCTTATTATCTGTTGAATGTAGAAACAACTCACGAAGAATGCGTAACACCCTTTTTCCAGCACTCTCTTATTTGGTAAAGCTCATGTAGGTCCCACCACTTTATGTGGGACATATTTCTTAAGTGTGGGGTCGACATGAGTTTCACCTAATAAGGGAGTGAGTGTTAGAGTGAACAATGGAAAGAGAGTGTTCTTAGCACTCCTCAACAACTCATACATAACTTTTAAATGATAAGAGTTTAATTAAGTGGGTTATCCACACGTCATCTAATTCTCTATATCTGTTCTTTTGATGAACAGGTTATGGTTCAGCCGGATATGCATTGTTTGTAGCTGTTTATGCTGGATTGGAGGTATCAGTGCATCTATCACTTTTCCTTCTTTTCAATACTGCTTGGCTCATAGTATATCTACCATGTGATATATCTTTGCGTAACTAATGTAGCATTTGAAGGACAGGACATATCATGACATATGCTTTTTGTTTTATCTTTGCCCTTGATTCATAATGTTTCAATCTAACTTTGGTTTATTTAATATTGTCCCAGATCCTTGCAATTCCTGCCATTCCCTTAACCATGTCAGCTGGACTTCTTTTTGGATCCCTTACCGGCACTATCATAGTCTCTATCAGTGGAACAGTGAGTCAATTTCTTTGAAAAAAACAGTAGAACATGCCTTCAAATCTTTCTTATAGTTCAGATCCAGAATATGCAAAATTCATATATAGTTTTAGATCAATTGATTGCATGAACTATAAAGGTTAATGTATAGTATATTGTTCAAATAATCAACTTTCTGATCATATACCTGTCAATATTTAAGACATCTAAAATTTGGTTTGCAAGAGTAAACAAGTACATTAGAAGTGATTGGTTGGACTATTTAACGTCATATGGCCTTGTTTGGGTAACTAGCTTAATTAAGAGCTTAAAGCATAAGCACATATCATATAAGTGCTTATGAATAAACTATTTCACTAATAAAAGATAAAAATAAAGTCTAGTTGTATTCATACAAGTTATAAGTTGTTTTCATTAGCCATCCTAGAGAGCTTATGGAAATAAGTTGAAAACAGTTTATAGACATGCCATAAGTTGTTTCTAGATGTTCTCCCAAACAGTTTCACAAATGTTTATACTAGTAGATAGACTCAAATAAGTCAATCCAAACAGACTTAAATGGAGTGAAGTATAATTTTTTTGTTACCGGTTAATAGATACTAAATGTGCGTATAATTTTGAATCTAATATTTTAAGGCTTTGTAGGTGGCGGCTAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGTATTCTAAAATTAGTGGAAGGGAATAAGAAGTTTCTTGCTATTGACAAAGCAATTGGAGAAAATGGCTTCAAGGTTGTTACCCTGCTTCGTTTGAGCCCTTTGCTGCCATTTTCTTTGGGGAATTATTTATATGGGTTGACATCTGTTAAGTTTCTTCCGTATGTATTGGGAAGGTATGGTGCTTATTACTGATCATTACCAATTCGTACTGATTTTCATTGTCCTTTTGAATCTTGAAATTGTTTCAAGGCTTGAAATTACATTACTTGGAATGATAATATCTCCATGAGTGTGATTTCCAGGAATAACATTCCTACTCATGTATTTGGTAAAAAAAATTATATTTCTCAGGAATGTTTTCAAAATTTGGTAATCGAGGCATAAGCATAAGTAGACTCTAAATTTTGACATGCAATATCCAAAGTTTCACATTTTTTTTTTATTGATTACAAAGAAGGCTTAAAGCCCAAAATATCTTCACTTTGATTCATCAGAGGTTGTGTCGTTATAAATGTTAATTAGTTGCAGCAAATTATGATTATACTCTAATGAAATGCAATTAAGAATGAAATTGGGAATATTCGTGTTAAGCTGTATATCTAATTCGAATCGTTCCAATTTATTTTTAACTTCAATTGGAAATGTACAGTTCTTATAAATTTCTAATTTAAAACAAATAATTGTCATGCAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTTAGTGCTGGTGCTTTTGGAAGAGCAATAATAGTGAGTTTCTACTTTGTTTTTCCCTGATATTTTTTGCATGCTTGATGTGTTAGCTATTCAATAATTATTAGAATCTTTTAGCCCTCCATTAGCTTCATATATTCTTTCGCCTTCTTTTCATCCTTTCTATGTGTGTTTTGTGAAGTACGAGATGGTGATAAAGGAAAAGTTCATGATGTTGAAGACAATGTTATCATACTGTTTCTTTGTAAATATTACTGGAATTGTCCTGGCAATTTCATGAAACCTTACCAAAAGTCCAGGTTTAGGTTTCCTTTTGCCGAAATAAAAGGAAAAGCTGGAAAAAAGTTATGGTAATGTGGGGGAGCCTTTTATAGATTTATTTAAATTAGGAGATTAATGATTAGTTTCTATCAAACACATGGTGCGAGATCAGAATGTTTTGGACTTAAGTGTCAAGACAAAACGTTGATTTTAGTGTTGTATAATGTATGTCTATGTTGGATGACAATCATGACATCTGTTGAGAAGTCTCGCATTGGATGAGATATGAATTGAAATTGTGTTTATAAGTGGTGGGCAATTGTCACCTTACAAGCCGGTTTTGTTGAGATGAGTTAGGCTCAATTCAAATTTTAAGATGGTATCCGAGTCTATCCAAGATCCATTGGGCCACCCCGGTCACACTCTAGATGTCAAACCCGGTGGTGATGGGTGTGTTGAGAATTCCCACATCAGATGAGAAATGTGGTGGGCAGTTGTCACCTTACAAACTGTTTTTGTAAGAATGAGTTAGTCATGACCCAAAAGAGTTACATAGCAGATTGATGAGTTTATGGTTGCTTACATCCTGTCTATGGGTGATGACGTCCCTCTGGAGTAGGACAGTGACGTCTTTGTGAATGATCTTTCTGTTGTTGAGGTCTTTTAACTATGTTCTCACTCTCTTGTTGGAAGATTAATTTGACCAAGAATTGTTTGGCAGGTCTGGTATCGAATATGGGTAGCCAGTTGCTTTATGCCTAAGCTTCTTTGGCTGGATTAGACCAAAGGTCAGAGGGGGACAGGATAAATGAGTTAGACTAGACAGGGATATAGATGACCTTTTTTGTGGATGTGTCACTGGCGAAAAAGGAGTTCCACGTGCTCTTGCACACTGGACAGACCGTTTCTGATGATGGCCCTGTTCAGGAAGATGTGTTAGTTTTTAGAAATTGGCTTGAGTCTTAAGATAACGAACTACAGAAGAAGAATAATGATATGAATATATGCTGCCAAGAGTTCCATTGCATTCCTGTAGAGTCATTCAGGGCTACACTCTTTTTTTTTTTTGAGAGGTTCAGGGCTACACTCTTAAAGCTGCTGGTTGTGAACGTTTATTAGGTAGGTATGCGGAAAACAGTATGAGTTCAGCCTATGCTACTTTGCCTCATAGCAGCCATATAATTGGGCACATCGGGTCCATTAAGCTGAGTATAGGTATAATGCCACTTTGCATATCTCAATAGTCAAATCCTTTTTAAGAGGACGTGTACAGAAGACAGCCACCAAACCTGACCTGCTTTCTAACTAATGAAACCAAAGTTGCTGCTGTGGCGCTTGAATTAAGTGAATGAGATGAATCCATTCCACAACTCGTGCTCCAAATAACTAAGCCCCTGACTCAAATAGAGAGGTACATGAATAAGAAGAGACATTTAGTAAATTTCAAAGGTGGAGAATGAGGTTTTCTAAAATTCTGGCCTCATAGACAGCAGTCTGGTGCCATGAGGACTGACTGAAAATTGGCTTCCCATTTTCATGACCCTTTCCAAATTTTGGCCAGAGTTAGAGAGGTGTAGTACAAGCTTAACCTACCAAAGGACTCGAGAATTTACCCAGTTTTTAATGCATATCCAAACTTAAATGTGACATAGGAAACTACTAATTGCAGGGGGTGTTGCCATGGGTAGCTGGAAGTTTAACCTGAATCTGATGCTGAGCCTAAACCAGTTCTGGGAAAAGTAAGCATTACAAAGGATAAAACTATGGTACAAAAACGCTTGATCAATTGGAAAGACAGCTCGGTTGAAAATGTCACATAGGAGGATGATGATGTCATTCCTAACCAGTTCCCGAAGTTCAGCCTTGAAGACAAGTTGATTCTATAGCAGGTTGTATTGTTAGCGATCGTGAAGTGGAATGGGCCAGCTACTGACTAATAGTTGGAATAGGCCCCAGGTTTAGAATGTTTTATTGTAGCACACGTATCAAAGAAGAAAAGAGTGCTGAGTTGACAAGGGAGGCAGAGAAGTGACATTGGCTGGAGTTAGTTGTATCAGGGACTAATGAGAGAAGTGAGTGATATCATAGAATTCTGTTATAGGAGAGAGATGGATCACTAAAAAGAAATTCTTTTATGAGGGAACCACTGGCTTGGGCTGATATACTATTCTACCAGATTGTTATTGTCTTTTCCCTGTAATAAACTGGCAGCAGTTATTTCCATGTGATGTCAGTTTTTTGGAAAGAGCTTGACCTTGTATTCTTTAGGGACAGATTTCAAATGCCTCAGAGACAGTTGTAAAATGGTCATTAGTCGCACTTTAATTAATGATAACTTCCTCCTTCCCCAATTTAAAAATAAAAAATAAAATTTTTTGGCAGAAGCTATCATTTTCGTTGTTTCTAATGCAATTCAGGATTATACTATCCATTTTGCTCTTTGAACTGAGCCCATCAGATAACACTTGGTTGATGTCGATTCATATTATCTTTTACCATGTTAGAAAGATTCATTCGTTGCCTCTTTAATATAACTGATGCTTCTACATTTCAGCAAGAAGAATCTGAACTTAGTTCACTTGGAGGAAACAATCAGCTGCTGACGCTTGGGCTGGGACTCTTGGCCACTGCATTAGCTGCTACATATGTCACAAAGCTTGCAAAGGTATTATCCTGTTTTCCATATCCTAATTAAAGAACATGTATTTATTTGTAATATTCAATAATAGGATATCAAGTAA

Protein sequence

>MS.gene060762.t1

MATNVTLSMPEIVKKGYGSAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFKVVTLLRLSPLLPFSLGNYLYGLTSVKFLPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESELSSLGGNNQLLTLGLGLLATALAATYVTKLAKDIK