AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055577


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055577.t1 MTR_1g082900 97.872 188 4 0 23 210 140 327 1.93e-138 390
MS.gene055577.t1 MTR_1g082900 95.238 126 6 0 23 148 140 265 4.24e-87 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055577.t1 AT5G27560 72.340 188 51 1 23 210 155 341 6.98e-99 290
MS.gene055577.t1 AT5G27560 72.340 188 51 1 23 210 155 341 6.98e-99 290
MS.gene055577.t1 AT5G27560 72.340 188 51 1 23 210 155 341 6.98e-99 290
MS.gene055577.t1 AT5G27560 71.196 184 52 1 23 206 155 337 8.01e-95 280

Find 51 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAAGCAAATATCTATT+TGG 0.206377 1.2:-60020784 None:intergenic
CTCAAACTTGGCGCCAAGTT+TGG 0.262372 1.2:-60018115 None:intergenic
TATGTTGCGCAGATGTTATT+TGG 0.303732 1.2:+60021000 MS.gene055577:intron
TGCCATTTGGTGCAGTATTT+CGG 0.343945 1.2:+60020389 MS.gene055577:CDS
ACCTCAATATCTTCAGTATC+AGG 0.376552 1.2:-60020823 None:intergenic
AGAGCTGCAGCACCGGCATC+TGG 0.389473 1.2:-60019101 None:intergenic
TCCACCTCCACCTCCAAACT+TGG 0.392380 1.2:+60018102 MS.gene055577:CDS
ACCTTGGAATTTCTCAAACT+TGG 0.396675 1.2:-60018127 None:intergenic
CCCCGACATCTTTGCTATAC+AGG 0.398941 1.2:-60019901 None:intergenic
AACAGACTTTGTCCTTGCTC+TGG 0.399492 1.2:-60021042 None:intergenic
GATATAATGTACGGCAGTTA+AGG 0.401996 1.2:+60019927 MS.gene055577:CDS
CTGCAGCTCTTCTAAAATAT+CGG 0.417986 1.2:+60019114 MS.gene055577:CDS
GCGTGGATTCCACATGATAA+GGG 0.432418 1.2:-60019879 None:intergenic
GGCGTGGATTCCACATGATA+AGG 0.432489 1.2:-60019880 None:intergenic
GCCTGTATAGCAAAGATGTC+GGG 0.439653 1.2:+60019900 MS.gene055577:CDS
TATTCTAACATCTGATGATC+AGG 0.447172 1.2:-60019445 None:intergenic
TTCCACATGATAAGGGGCCT+TGG 0.447832 1.2:-60019872 None:intergenic
CACCGAAATACTGCACCAAA+TGG 0.466864 1.2:-60020391 None:intergenic
CATATGCGACCTATGCCATT+TGG 0.467305 1.2:+60020376 MS.gene055577:CDS
GCCAAGTTTGGAGGTGGAGG+TGG 0.474503 1.2:-60018103 None:intergenic
GGCGCCAAGTTTGGAGGTGG+AGG 0.475987 1.2:-60018106 None:intergenic
GCGAAGGGAAATTCTTCCAT+TGG 0.484219 1.2:-60018070 None:intergenic
AAGTTTGGAGGTGGAGGTGG+AGG 0.487859 1.2:-60018100 None:intergenic
AAACTTGGCGCCAAGTTTGG+AGG 0.491870 1.2:-60018112 None:intergenic
AGGTGGAGGTTGAAGAGCGA+AGG 0.495518 1.2:-60018086 None:intergenic
ATCTTCAGTATCAGGACGGT+TGG 0.519070 1.2:-60020815 None:intergenic
CTTGGCGCCAAGTTTGGAGG+TGG 0.536310 1.2:-60018109 None:intergenic
CGCCTGTATAGCAAAGATGT+CGG 0.538948 1.2:+60019899 MS.gene055577:CDS
TCCTGATACTGAAGATATTG+AGG 0.543903 1.2:+60020822 MS.gene055577:CDS
AGCACCGGCATCTGGAAATA+CGG 0.545922 1.2:-60019093 None:intergenic
GGTGGAGGTTGAAGAGCGAA+GGG 0.546997 1.2:-60018085 None:intergenic
GATCGAAAGCTTGTAGATAG+TGG 0.557895 1.2:+60019397 MS.gene055577:CDS
TATAGCAAAGATGTCGGGGT+TGG 0.560922 1.2:+60019905 MS.gene055577:CDS
ATCACATAGACTTCATGAAA+CGG 0.569010 1.2:-60021098 None:intergenic
TGTTCAGTGATGACAAGGAT+AGG 0.572733 1.2:+60020761 MS.gene055577:CDS
GCCAAGTTTGAGAAATTCCA+AGG 0.586495 1.2:+60018126 MS.gene055577:CDS
TGTAGATAGTGGTGATGAGA+TGG 0.592499 1.2:+60019408 MS.gene055577:CDS
TCGGGGTTGGATATAATGTA+CGG 0.596860 1.2:+60019918 MS.gene055577:CDS
AGTCTGTTTGACAAAGCGGC+AGG 0.600065 1.2:+60021057 MS.gene055577:CDS
CAGCTCTTCTAAAATATCGG+TGG 0.611070 1.2:+60019117 MS.gene055577:CDS
CGTGGATTCCACATGATAAG+GGG 0.614438 1.2:-60019878 None:intergenic
AAAGCCGTATTTCCAGATGC+CGG 0.614566 1.2:+60019089 MS.gene055577:CDS
AATACTGCACCAAATGGCAT+AGG 0.619316 1.2:-60020385 None:intergenic
ACATCTTTGCTATACAGGCG+TGG 0.625104 1.2:-60019896 None:intergenic
AGATAGTGGTGATGAGATGG+TGG 0.638397 1.2:+60019411 MS.gene055577:CDS
ACAAAGTCTGTTTGACAAAG+CGG 0.639727 1.2:+60021053 MS.gene055577:CDS
GAAGAACAGAAACCAGAGCA+AGG 0.653627 1.2:+60021030 MS.gene055577:CDS
CCTGTATAGCAAAGATGTCG+GGG 0.661498 1.2:+60019901 MS.gene055577:CDS
CAATATCTTCAGTATCAGGA+CGG 0.662055 1.2:-60020819 None:intergenic
AGCCAAGGCCCCTTATCATG+TGG 0.662906 1.2:+60019870 MS.gene055577:intron
GAAAGTGTTCAGTGATGACA+AGG 0.693169 1.2:+60020756 MS.gene055577:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATAAATGACAA+GGG + chr1.2:60019700-60019719 MS.gene055577:intron 10.0%
!! TAAAAAAAATATAAATGACA+AGG + chr1.2:60019699-60019718 MS.gene055577:intron 10.0%
!! ATGTATATAATAATCCTTAT+GGG - chr1.2:60020444-60020463 None:intergenic 15.0%
!! TAAATGATTAAGGTTATTAT+AGG - chr1.2:60018825-60018844 None:intergenic 15.0%
!! TTAAAAAAAAGGAAGAATAA+TGG - chr1.2:60020929-60020948 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG - chr1.2:60018835-60018854 None:intergenic 15.0%
!!! TACATCTTATTTTGAATAAT+TGG + chr1.2:60020286-60020305 MS.gene055577:intron 15.0%
!!! TGATGTTTCTATTAAAAAAA+AGG - chr1.2:60020940-60020959 None:intergenic 15.0%
!!! TTTGTTATTTCTTTTCTTTT+CGG + chr1.2:60020131-60020150 MS.gene055577:intron 15.0%
!! AACGATATATACATAGAAAA+TGG - chr1.2:60020893-60020912 None:intergenic 20.0%
!! AATAGACAAGAAATAATAGA+TGG - chr1.2:60020717-60020736 None:intergenic 20.0%
!! AGTGAAAGAAAAAGATATAT+TGG - chr1.2:60018411-60018430 None:intergenic 20.0%
!! ATGTATATATCGTTATAGTT+GGG + chr1.2:60020899-60020918 MS.gene055577:intron 20.0%
!! CAATGCAAATTAAAATATAC+TGG - chr1.2:60019314-60019333 None:intergenic 20.0%
!! CATGTATATAATAATCCTTA+TGG - chr1.2:60020445-60020464 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG + chr1.2:60018877-60018896 MS.gene055577:intron 20.0%
!! TATGTATATATCGTTATAGT+TGG + chr1.2:60020898-60020917 MS.gene055577:intron 20.0%
!! TCAAAATGTGACAATTAAAA+AGG - chr1.2:60018739-60018758 None:intergenic 20.0%
!! TTTATAAGTAATATCTAGCA+AGG - chr1.2:60020869-60020888 None:intergenic 20.0%
!!! CCATTTTTAATATAAGATCA+GGG - chr1.2:60018630-60018649 None:intergenic 20.0%
!!! TCCATTTTTAATATAAGATC+AGG - chr1.2:60018631-60018650 None:intergenic 20.0%
! AAAGATATATTGGAAGTAGT+TGG - chr1.2:60018401-60018420 None:intergenic 25.0%
! AACATGCACAATTATTTGTT+TGG + chr1.2:60019358-60019377 MS.gene055577:intron 25.0%
! AAGTCAAAATCATTTACAGA+CGG - chr1.2:60020653-60020672 None:intergenic 25.0%
! AAGTGACAATTATAAAGGAA+CGG + chr1.2:60018969-60018988 MS.gene055577:intron 25.0%
! AATGATATAAGTTAGTAGTC+TGG - chr1.2:60020327-60020346 None:intergenic 25.0%
! ACCCTACTGATAAAAAATTA+GGG + chr1.2:60018650-60018669 MS.gene055577:intron 25.0%
! ATATAATAATCCTTATGGGA+GGG - chr1.2:60020440-60020459 None:intergenic 25.0%
! ATGAAAAAGTAAGAATTCAG+TGG - chr1.2:60019251-60019270 None:intergenic 25.0%
! CAAAAGACTTTAGATATGTT+TGG + chr1.2:60019993-60020012 MS.gene055577:intron 25.0%
! CCCTGATCTTATATTAAAAA+TGG + chr1.2:60018627-60018646 MS.gene055577:intron 25.0%
! CTAGCAATATATAAATTCTG+AGG + chr1.2:60020201-60020220 MS.gene055577:intron 25.0%
! CTCTCTGCAATAAATATATA+GGG + chr1.2:60018867-60018886 MS.gene055577:intron 25.0%
! TATATAATAATCCTTATGGG+AGG - chr1.2:60020441-60020460 None:intergenic 25.0%
! TATTCAAGAAACTAAATGTC+AGG + chr1.2:60018567-60018586 MS.gene055577:intron 25.0%
! TCTCTCTGCAATAAATATAT+AGG + chr1.2:60018866-60018885 MS.gene055577:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG + chr1.2:60018868-60018887 MS.gene055577:intron 25.0%
! TGCAAAAGTGACAATTATAA+AGG + chr1.2:60018964-60018983 MS.gene055577:intron 25.0%
! TTAACAACCATCTTAATTAC+AGG + chr1.2:60018453-60018472 MS.gene055577:intron 25.0%
! TTTGCAAGCAAATATCTATT+TGG - chr1.2:60020787-60020806 None:intergenic 25.0%
!! ACATAAAGCATTAATCAATG+TGG - chr1.2:60019179-60019198 None:intergenic 25.0%
!! ATTATTTCTTGTCTATTGTC+TGG + chr1.2:60020720-60020739 MS.gene055577:intron 25.0%
!! GTTCAAAGTATCATTAAATG+TGG - chr1.2:60018908-60018927 None:intergenic 25.0%
!! TGTATGATTGTCTGAAATTT+AGG - chr1.2:60020105-60020124 None:intergenic 25.0%
!!! AGTTAAGGCAATACTTTTTA+AGG + chr1.2:60019942-60019961 MS.gene055577:CDS 25.0%
!!! CAAACATATCTAAAGTCTTT+TGG - chr1.2:60019995-60020014 None:intergenic 25.0%
!!! TAAAGTCTTTTGGAAAGAAA+TGG - chr1.2:60019985-60020004 None:intergenic 25.0%
!!! TAGTTTTTCAAATGTTAACC+AGG + chr1.2:60020057-60020076 MS.gene055577:intron 25.0%
!!! TTTACTTATGGCTTGTTTTT+GGG - chr1.2:60020576-60020595 None:intergenic 25.0%
!!! TTTTACTTATGGCTTGTTTT+TGG - chr1.2:60020577-60020596 None:intergenic 25.0%
!!! TTTTAGCTCTATTCTTATGT+TGG - chr1.2:60019684-60019703 None:intergenic 25.0%
AAACTAAATGTCAGGTTAGT+GGG + chr1.2:60018575-60018594 MS.gene055577:intron 30.0%
AAATGATACCATTATGTACC+TGG - chr1.2:60020078-60020097 None:intergenic 30.0%
AATGTTAACCAGGTACATAA+TGG + chr1.2:60020067-60020086 MS.gene055577:intron 30.0%
AGTTCAACCTGTAATTAAGA+TGG - chr1.2:60018463-60018482 None:intergenic 30.0%
ATGCAGACTATCTGAAAATT+AGG - chr1.2:60020488-60020507 None:intergenic 30.0%
CATTTCACTTGAGAATTTGA+TGG + chr1.2:60019268-60019287 MS.gene055577:intron 30.0%
CCCTACTGATAAAAAATTAG+GGG + chr1.2:60018651-60018670 MS.gene055577:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG - chr1.2:60018730-60018749 None:intergenic 30.0%
GACCCTACTGATAAAAAATT+AGG + chr1.2:60018649-60018668 MS.gene055577:intron 30.0%
GATGGTTGTTAAAAATTGAG+TGG - chr1.2:60018445-60018464 None:intergenic 30.0%
TATAATAATCCTTATGGGAG+GGG - chr1.2:60020439-60020458 None:intergenic 30.0%
TATTCATATATTTGCAGCCA+AGG + chr1.2:60019855-60019874 MS.gene055577:intron 30.0%
TATTCTAACATCTGATGATC+AGG - chr1.2:60019448-60019467 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG - chr1.2:60018731-60018750 None:intergenic 30.0%
TGTTAAAAATTGAGTGGAAG+CGG - chr1.2:60018439-60018458 None:intergenic 30.0%
TTCACATTTCTATCATGATG+AGG - chr1.2:60019611-60019630 None:intergenic 30.0%
! TAAAGCATTAATCAATGTGG+TGG - chr1.2:60019176-60019195 None:intergenic 30.0%
!! ACCACTTTTGGATTTAAAAG+TGG + chr1.2:60020596-60020615 MS.gene055577:intron 30.0%
!! TCCAAAAGTGGTTTTACTTA+TGG - chr1.2:60020588-60020607 None:intergenic 30.0%
!! TCCACTTTTAAATCCAAAAG+TGG - chr1.2:60020600-60020619 None:intergenic 30.0%
!! TGTAATGATAGTTTCTAGTG+AGG - chr1.2:60018175-60018194 None:intergenic 30.0%
!!! ACCCCTAATTTTTTATCAGT+AGG - chr1.2:60018655-60018674 None:intergenic 30.0%
!!! ATGCTTTGTTTAGTTTTGCA+AGG + chr1.2:60019144-60019163 MS.gene055577:CDS 30.0%
!!! CCCCTAATTTTTTATCAGTA+GGG - chr1.2:60018654-60018673 None:intergenic 30.0%
AAATAACATCTGCGCAACAT+AGG - chr1.2:60021001-60021020 None:intergenic 35.0%
AACTAAATGTCAGGTTAGTG+GGG + chr1.2:60018576-60018595 MS.gene055577:intron 35.0%
ACAAAGTCTGTTTGACAAAG+CGG + chr1.2:60021053-60021072 MS.gene055577:CDS 35.0%
ACCTCAATATCTTCAGTATC+AGG - chr1.2:60020826-60020845 None:intergenic 35.0%
ACCTTGGAATTTCTCAAACT+TGG - chr1.2:60018130-60018149 None:intergenic 35.0%
ATACTATGCAGAGTTAACCA+TGG - chr1.2:60020541-60020560 None:intergenic 35.0%
CAATATCTTCAGTATCAGGA+CGG - chr1.2:60020822-60020841 None:intergenic 35.0%
CATCATTTGTATCTTCAGGA+GGG + chr1.2:60018356-60018375 MS.gene055577:intron 35.0%
CTATAATGCAGAGTTAACCA+TGG - chr1.2:60020511-60020530 None:intergenic 35.0%
CTATCTGAAAATTAGGAGCA+AGG - chr1.2:60020481-60020500 None:intergenic 35.0%
GAAACTAAATGTCAGGTTAG+TGG + chr1.2:60018574-60018593 MS.gene055577:intron 35.0%
GAAGTAGTTGGAACATACAA+TGG - chr1.2:60018389-60018408 None:intergenic 35.0%
GACAATTATAAAGGAACGGA+GGG + chr1.2:60018973-60018992 MS.gene055577:intron 35.0%
GAGCTCTGTTCTATCTTTAA+CGG + chr1.2:60019515-60019534 MS.gene055577:intron 35.0%
GATATAATGTACGGCAGTTA+AGG + chr1.2:60019927-60019946 MS.gene055577:CDS 35.0%
GTAGTAGTAGTAATACCTGT+CGG - chr1.2:60018214-60018233 None:intergenic 35.0%
TATCAAAACACAAGAATGCG+TGG - chr1.2:60019815-60019834 None:intergenic 35.0%
TATGTTGCGCAGATGTTATT+TGG + chr1.2:60021000-60021019 MS.gene055577:intron 35.0%
TCCTGAAGATACAAATGATG+CGG - chr1.2:60018356-60018375 None:intergenic 35.0%
TCCTGATACTGAAGATATTG+AGG + chr1.2:60020822-60020841 MS.gene055577:CDS 35.0%
TGACAATTATAAAGGAACGG+AGG + chr1.2:60018972-60018991 MS.gene055577:intron 35.0%
TGCAGTAATACAATCAAGTC+AGG + chr1.2:60018327-60018346 MS.gene055577:intron 35.0%
TTACTCTGACAAAATAGCTG+CGG + chr1.2:60019212-60019231 MS.gene055577:intron 35.0%
! AATTCCATCAAGTTGTCACA+TGG - chr1.2:60019587-60019606 None:intergenic 35.0%
! GCCATAAGTAAAACCACTTT+TGG + chr1.2:60020584-60020603 MS.gene055577:intron 35.0%
!! AGCAAATTTGCTAGATCACT+TGG + chr1.2:60020962-60020981 MS.gene055577:intron 35.0%
!! CTGCAGCTCTTCTAAAATAT+CGG + chr1.2:60019114-60019133 MS.gene055577:CDS 35.0%
!! TCTTTTGGAAAGAAATGGCT+TGG - chr1.2:60019980-60019999 None:intergenic 35.0%
!!! ATTGTCTGGTTTTCAGATTG+TGG + chr1.2:60020734-60020753 MS.gene055577:intron 35.0%
AACAGAGCTCAGAGATTTAC+TGG - chr1.2:60019505-60019524 None:intergenic 40.0%
AAGATAAAGACGAAACCGAC+AGG + chr1.2:60018196-60018215 MS.gene055577:intron 40.0%
AAGCTTTCGATCACTTAAGC+TGG - chr1.2:60019389-60019408 None:intergenic 40.0%
AATACTGCACCAAATGGCAT+AGG - chr1.2:60020388-60020407 None:intergenic 40.0%
ACCGCATCATTTGTATCTTC+AGG + chr1.2:60018352-60018371 MS.gene055577:intron 40.0%
CCAACAATGTGCGAATTTCA+CGG - chr1.2:60020629-60020648 None:intergenic 40.0%
CTCGAATTCTTAGACGATGA+AGG + chr1.2:60018496-60018515 MS.gene055577:intron 40.0%
GATCGAAAGCTTGTAGATAG+TGG + chr1.2:60019397-60019416 MS.gene055577:CDS 40.0%
GCATCATTTGTATCTTCAGG+AGG + chr1.2:60018355-60018374 MS.gene055577:intron 40.0%
GCCAAGTTTGAGAAATTCCA+AGG + chr1.2:60018126-60018145 MS.gene055577:CDS 40.0%
TCGGGGTTGGATATAATGTA+CGG + chr1.2:60019918-60019937 MS.gene055577:CDS 40.0%
TGCATTATAGTCTGCATCCA+TGG + chr1.2:60020521-60020540 MS.gene055577:intron 40.0%
TGTTCAGTGATGACAAGGAT+AGG + chr1.2:60020761-60020780 MS.gene055577:CDS 40.0%
TTTCAGATAGTCTGCATCCA+TGG + chr1.2:60020491-60020510 MS.gene055577:intron 40.0%
! CAAATGCACGTTTGTCGTTT+GGG + chr1.2:60020026-60020045 MS.gene055577:intron 40.0%
! GGAATTGTCAAGGCTTTTCT+TGG + chr1.2:60018537-60018556 MS.gene055577:intron 40.0%
! TGTAGATAGTGGTGATGAGA+TGG + chr1.2:60019408-60019427 MS.gene055577:CDS 40.0%
!! CAGCTCTTCTAAAATATCGG+TGG + chr1.2:60019117-60019136 MS.gene055577:CDS 40.0%
!! GAAAGTGTTCAGTGATGACA+AGG + chr1.2:60020756-60020775 MS.gene055577:CDS 40.0%
!! GTTTCTAGTGAGGATGATGA+AGG - chr1.2:60018165-60018184 None:intergenic 40.0%
!! TCGTCTAAGAATTCGAGTTG+AGG - chr1.2:60018493-60018512 None:intergenic 40.0%
!! TGCCATTTGGTGCAGTATTT+CGG + chr1.2:60020389-60020408 MS.gene055577:CDS 40.0%
!! TTTCGGTGTTATCCAGAGTA+AGG + chr1.2:60020406-60020425 MS.gene055577:intron 40.0%
!!! GCTTGTTTTTGGGTGATCTA+GGG - chr1.2:60020566-60020585 None:intergenic 40.0%
AAAGCCGTATTTCCAGATGC+CGG + chr1.2:60019089-60019108 MS.gene055577:CDS 45.0%
AACAGACTTTGTCCTTGCTC+TGG - chr1.2:60021045-60021064 None:intergenic 45.0%
AAGGAACGGAGGGAGTAATT+TGG + chr1.2:60018983-60019002 MS.gene055577:intron 45.0%
ACAGCCATGTGACAACTTGA+TGG + chr1.2:60019580-60019599 MS.gene055577:intron 45.0%
ATCAGGGCCTCCAATTTGAT+TGG - chr1.2:60018614-60018633 None:intergenic 45.0%
ATCCTTATGGGAGGGGAAAA+AGG - chr1.2:60020432-60020451 None:intergenic 45.0%
ATCTTCAGTATCAGGACGGT+TGG - chr1.2:60020818-60020837 None:intergenic 45.0%
ATTACTGCACCTTCCAAGTC+TGG - chr1.2:60018316-60018335 None:intergenic 45.0%
CACCGAAATACTGCACCAAA+TGG - chr1.2:60020394-60020413 None:intergenic 45.0%
CAGTTGTTTACCTCCAGACT+TGG + chr1.2:60018300-60018319 MS.gene055577:intron 45.0%
CATATGCGACCTATGCCATT+TGG + chr1.2:60020376-60020395 MS.gene055577:CDS 45.0%
CCGTGAAATTCGCACATTGT+TGG + chr1.2:60020626-60020645 MS.gene055577:intron 45.0%
CCTGTATAGCAAAGATGTCG+GGG + chr1.2:60019901-60019920 MS.gene055577:CDS 45.0%
CGCCTGTATAGCAAAGATGT+CGG + chr1.2:60019899-60019918 MS.gene055577:CDS 45.0%
CGTCATCCCAATCAAATTGG+AGG + chr1.2:60018604-60018623 MS.gene055577:intron 45.0%
CGTGGATTCCACATGATAAG+GGG - chr1.2:60019881-60019900 None:intergenic 45.0%
CTGCGTCATCCCAATCAAAT+TGG + chr1.2:60018601-60018620 MS.gene055577:intron 45.0%
GAAGAACAGAAACCAGAGCA+AGG + chr1.2:60021030-60021049 MS.gene055577:CDS 45.0%
GCAAATGCACGTTTGTCGTT+TGG + chr1.2:60020025-60020044 MS.gene055577:intron 45.0%
GCCTGTATAGCAAAGATGTC+GGG + chr1.2:60019900-60019919 MS.gene055577:CDS 45.0%
GCGTGGATTCCACATGATAA+GGG - chr1.2:60019882-60019901 None:intergenic 45.0%
TATAGCAAAGATGTCGGGGT+TGG + chr1.2:60019905-60019924 MS.gene055577:CDS 45.0%
TCAGGGCCTCCAATTTGATT+GGG - chr1.2:60018613-60018632 None:intergenic 45.0%
TCTAGTGAGGATGATGAAGG+AGG - chr1.2:60018162-60018181 None:intergenic 45.0%
TGGACAGAATTGCATCAGCA+TGG - chr1.2:60019294-60019313 None:intergenic 45.0%
TGTTTACCTCCAGACTTGGA+AGG + chr1.2:60018304-60018323 MS.gene055577:intron 45.0%
! ACATCTTTGCTATACAGGCG+TGG - chr1.2:60019899-60019918 None:intergenic 45.0%
! AGATAGTGGTGATGAGATGG+TGG + chr1.2:60019411-60019430 MS.gene055577:CDS 45.0%
!! TTTTAGAAGAGCTGCAGCAC+CGG - chr1.2:60019111-60019130 None:intergenic 45.0%
!!! GGCTTGTTTTTGGGTGATCT+AGG - chr1.2:60020567-60020586 None:intergenic 45.0%
AAACTTGGCGCCAAGTTTGG+AGG - chr1.2:60018115-60018134 None:intergenic 50.0%
AGGGGAAAAAGGCCTTACTC+TGG - chr1.2:60020421-60020440 None:intergenic 50.0%
AGTCTGTTTGACAAAGCGGC+AGG + chr1.2:60021057-60021076 MS.gene055577:CDS 50.0%
CTCAAACTTGGCGCCAAGTT+TGG - chr1.2:60018118-60018137 None:intergenic 50.0%
GAGGATGATGAAGGAGGTTC+AGG - chr1.2:60018156-60018175 None:intergenic 50.0%
GGCGTGGATTCCACATGATA+AGG - chr1.2:60019883-60019902 None:intergenic 50.0%
TTCCACATGATAAGGGGCCT+TGG - chr1.2:60019875-60019894 None:intergenic 50.0%
! AAGGAGGTTCAGGTTCACCT+TGG - chr1.2:60018146-60018165 None:intergenic 50.0%
! CCCCGACATCTTTGCTATAC+AGG - chr1.2:60019904-60019923 None:intergenic 50.0%
! TGCACGTTTGTCGTTTGGGT+AGG + chr1.2:60020030-60020049 MS.gene055577:intron 50.0%
!! AGCACCGGCATCTGGAAATA+CGG - chr1.2:60019096-60019115 None:intergenic 50.0%
!! TGGAGCTCTGGGAATTGTCA+AGG + chr1.2:60018527-60018546 MS.gene055577:intron 50.0%
AAGTTTGGAGGTGGAGGTGG+AGG - chr1.2:60018103-60018122 None:intergenic 55.0%
ACTGCACCTTCCAAGTCTGG+AGG - chr1.2:60018313-60018332 None:intergenic 55.0%
AGCCAAGGCCCCTTATCATG+TGG + chr1.2:60019870-60019889 MS.gene055577:intron 55.0%
AGGTGGAGGTTGAAGAGCGA+AGG - chr1.2:60018089-60018108 None:intergenic 55.0%
GGTGGAGGTTGAAGAGCGAA+GGG - chr1.2:60018088-60018107 None:intergenic 55.0%
TCCACCTCCACCTCCAAACT+TGG + chr1.2:60018102-60018121 MS.gene055577:CDS 55.0%
! AGACGATGAAGGCGCACAGT+TGG + chr1.2:60018507-60018526 MS.gene055577:intron 55.0%
! AGCGGCAGGCGTTTTCTCTT+CGG + chr1.2:60021071-60021090 MS.gene055577:CDS 55.0%
! GGCCTTTTTCCCCTCCCATA+AGG + chr1.2:60020427-60020446 MS.gene055577:intron 55.0%
AAGGCGCACAGTTGGAGCTC+TGG + chr1.2:60018515-60018534 MS.gene055577:intron 60.0%
AGGCGCACAGTTGGAGCTCT+GGG + chr1.2:60018516-60018535 MS.gene055577:intron 60.0%
CTTGGCGCCAAGTTTGGAGG+TGG - chr1.2:60018112-60018131 None:intergenic 60.0%
GCCAAGTTTGGAGGTGGAGG+TGG - chr1.2:60018106-60018125 None:intergenic 60.0%
GGCGCCAAGTTTGGAGGTGG+AGG - chr1.2:60018109-60018128 None:intergenic 65.0%
!! AGAGCTGCAGCACCGGCATC+TGG - chr1.2:60019104-60019123 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 60018073 60021119 60018073 ID=MS.gene055577
chr1.2 mRNA 60018073 60021119 60018073 ID=MS.gene055577.t1;Parent=MS.gene055577
chr1.2 exon 60018073 60018147 60018073 ID=MS.gene055577.t1.exon1;Parent=MS.gene055577.t1
chr1.2 CDS 60018073 60018147 60018073 ID=cds.MS.gene055577.t1;Parent=MS.gene055577.t1
chr1.2 exon 60019083 60019165 60019083 ID=MS.gene055577.t1.exon2;Parent=MS.gene055577.t1
chr1.2 CDS 60019083 60019165 60019083 ID=cds.MS.gene055577.t1;Parent=MS.gene055577.t1
chr1.2 exon 60019390 60019504 60019390 ID=MS.gene055577.t1.exon3;Parent=MS.gene055577.t1
chr1.2 CDS 60019390 60019504 60019390 ID=cds.MS.gene055577.t1;Parent=MS.gene055577.t1
chr1.2 exon 60019872 60019963 60019872 ID=MS.gene055577.t1.exon4;Parent=MS.gene055577.t1
chr1.2 CDS 60019872 60019963 60019872 ID=cds.MS.gene055577.t1;Parent=MS.gene055577.t1
chr1.2 exon 60020357 60020422 60020357 ID=MS.gene055577.t1.exon5;Parent=MS.gene055577.t1
chr1.2 CDS 60020357 60020422 60020357 ID=cds.MS.gene055577.t1;Parent=MS.gene055577.t1
chr1.2 exon 60020750 60020843 60020750 ID=MS.gene055577.t1.exon6;Parent=MS.gene055577.t1
chr1.2 CDS 60020750 60020843 60020750 ID=cds.MS.gene055577.t1;Parent=MS.gene055577.t1
chr1.2 exon 60021012 60021119 60021012 ID=MS.gene055577.t1.exon7;Parent=MS.gene055577.t1
chr1.2 CDS 60021012 60021119 60021012 ID=cds.MS.gene055577.t1;Parent=MS.gene055577.t1
Gene Sequence

>MS.gene055577

ATGGAAGAATTTCCCTTCGCTCTTCAACCTCCACCTCCACCTCCAAACTTGGCGCCAAGTTTGAGAAATTCCAAGGTGAACCTGAACCTCCTTCATCATCCTCACTAGAAACTATCATTACACAAGATAAAGACGAAACCGACAGGTATTACTACTACTACTACTACTTTACAATTTTCATACAATCAATTTTACTAATATTTATTTGAAATCTGTTATGTATGTTTCAGTTGTTTACCTCCAGACTTGGAAGGTGCAGTAATACAATCAAGTCAGGCTACCGCATCATTTGTATCTTCAGGAGGGATGAGAGCCATTGTATGTTCCAACTACTTCCAATATATCTTTTTCTTTCACTTCATGCCGCTTCCACTCAATTTTTAACAACCATCTTAATTACAGGTTGAACTTTTAATTCCTCAACTCGAATTCTTAGACGATGAAGGCGCACAGTTGGAGCTCTGGGAATTGTCAAGGCTTTTCTTGGATACACTTATTCAAGAAACTAAATGTCAGGTTAGTGGGGTGCTGCGTCATCCCAATCAAATTGGAGGCCCTGATCTTATATTAAAAATGGACCCTACTGATAAAAAATTAGGGGTAATAAGAAAGTTAATTTGATTGTTAGAAAGTTAATTTGTAATAAGAGATACTCCCTCTGTTCCTTTTTAATTGTCACATTTTGACTTTTTACACAAATCAAGACAACAAATACTTTTATTACTTTTGATATAACAATTTATCTTTTTCCTATAATAACCTTAATCATTTAATACTTCATTTCATACATTTCTCTCTCTGCAATAAATATATAGGGGTAATATAGGTAAAACCACATTTAATGATACTTTGAACTTTGAAAACGACAGTTATTTAGAAACAAAAATTTTATGCAAAAGTGACAATTATAAAGGAACGGAGGGAGTAATTTGGTTTTATGATGTGTATGTTAATACATATATTGTATAAGTTGAAACTCAGTTGCTAAGTTTCATGACTTTGATTGTTAGAAAGTTAAAGCCGTATTTCCAGATGCCGGTGCTGCAGCTCTTCTAAAATATCGGTGGAAAGATGCTTTGTTTAGTTTTGCAAGGTGACTGCCACCACATTGATTAATGCTTTATGTTTTCTTTTGTTGTTTACTCTGACAAAATAGCTGCGGACTACACTTCTAACCACTGAATTCTTACTTTTTCATTTCACTTGAGAATTTGATGGCCATGCTGATGCAATTCTGTCCAGTATATTTTAATTTGCATTGTATTTATTGTCATGCTATAGTTATAACATGCACAATTATTTGTTTGGTTTTTCCAGCTTAAGTGATCGAAAGCTTGTAGATAGTGGTGATGAGATGGTGGTTATGATTGTTCCTGATCATCAGATGTTAGAATATGTAGAGAAAATTGCATCTACTCTCTCTGATGATCCAGTAAATCTCTGAGCTCTGTTCTATCTTTAACGGAATCGTTTTTTGTTAGAGATTCTTGTGATATCTGAAATTTAAACAGCCATGTGACAACTTGATGGAATTTCCTCATCATGATAGAAATGTGAAAGCTTTTTATATGTGTGATTGATTCTATTCACTAGATTCTAATTCATTGACCAACATAAGAATAGAGCTAAAAAAAATATAAATGACAAGGGTTTCAGAACTAATGATATTTCTCATATTTGTCATTCTTGAGAGCAAGATAGACTGCAAGATATTCACTTTGCATCAAGTTTAGAAATTTCCACGCATTCTTGTGTTTTGATATTTATAATTTTCATACAAACTATTCATATATTTGCAGCCAAGGCCCCTTATCATGTGGAATCCACGCCTGTATAGCAAAGATGTCGGGGTTGGATATAATGTACGGCAGTTAAGGCAATACTTTTTAAGGTATGCTTGCTTTCCAAGCCATTTCTTTCCAAAAGACTTTAGATATGTTTGGTTTCAAGTTGCAAATGCACGTTTGTCGTTTGGGTAGGTTTATAGTTTTTCAAATGTTAACCAGGTACATAATGGTATCATTTACTTCCTAAATTTCAGACAATCATACATTTGTTTTTGTTATTTCTTTTCTTTTCGGACAATCATACATTTGTTTACGTCTTTTTAAGTCATATAACAGAGTAGCTAGCAATATATAAATTCTGAGGTTCACTTCAAGTTAGTAACTTACTGTTCATTGAATAAGAATTCATTTCTTATGCTTTCTGAATACATCTTATTTTGAATAATTGGTTTATTCTGATTAATCCAGACTACTAACTTATATCATTTGATGTACAGCACTTTTACAACTGTCTATCATATGCGACCTATGCCATTTGGTGCAGTATTTCGGTGTTATCCAGAGTAAGGCCTTTTTCCCCTCCCATAAGGATTATTATATACATGAATAACAAACAATCCTTGCTCCTAATTTTCAGATAGTCTGCATCCATGGTTAACTCTGCATTATAGTCTGCATCCATGGTTAACTCTGCATAGTATAACCCTAGATCACCCAAAAACAAGCCATAAGTAAAACCACTTTTGGATTTAAAAGTGGATTAAATCCGTGAAATTCGCACATTGTTGGACCGTCTGTAAATGATTTTGACTTGCGATAATTGTCTGCATGAAGTATAAATTGTAAAGCTCAAACCATCTATTATTTCTTGTCTATTGTCTGGTTTTCAGATTGTGGAAAGTGTTCAGTGATGACAAGGATAGGCCAAATAGATATTTGCTTGCAAAAGAATATGCCAACCGTCCTGATACTGAAGATATTGAGGTTAGTAGCTTCATCTTTAATACCTTGCTAGATATTACTTATAAAACCATTTTCTATGTATATATCGTTATAGTTGGGATAGCCATTATTCTTCCTTTTTTTTAATAGAAACATCAACAGCAAATTTGCTAGATCACTTGGCATTCATATACTGCCTATGTTGCGCAGATGTTATTTGGCAACAACGAAGAACAGAAACCAGAGCAAGGACAAAGTCTGTTTGACAAAGCGGCAGGCGTTTTCTCTTCGGTTAACCGTTTCATGAAGTCTATGTGA

Protein sequence

>MS.gene055577.t1

MEEFPFALQPPPPPPNLAPSLRNSKKVKAVFPDAGAAALLKYRWKDALFSFASLSDRKLVDSGDEMVVMIVPDHQMLEYVEKIASTLSDDPPRPLIMWNPRLYSKDVGVGYNVRQLRQYFLSTFTTVYHMRPMPFGAVFRCYPELWKVFSDDKDRPNRYLLAKEYANRPDTEDIEMLFGNNEEQKPEQGQSLFDKAAGVFSSVNRFMKSM