Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81846.t1 | XP_013442679.1 | 94.7 | 320 | 16 | 1 | 16 | 335 | 18 | 336 | 1.90E-164 | 588.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81846.t1 | Q9SUC9 | 40.1 | 324 | 160 | 9 | 10 | 325 | 7 | 304 | 6.5e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81846.t1 | G8A0D6 | 94.7 | 320 | 16 | 1 | 16 | 335 | 18 | 336 | 1.3e-164 | 588.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05296 | MS.gene81846 | 0.854965 | 8.66E-62 | -1.69E-46 |
| MS.gene055277 | MS.gene81846 | 0.812126 | 4.96E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene81846 | 0.802113 | 6.54E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene81846 | 0.820205 | 7.76E-53 | -1.69E-46 |
| MS.gene060005 | MS.gene81846 | 0.806032 | 1.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81846.t1 | MTR_0110s0010 | 95.522 | 335 | 14 | 1 | 1 | 335 | 3 | 336 | 0.0 | 592 |
| MS.gene81846.t1 | MTR_8g106870 | 62.609 | 345 | 107 | 9 | 3 | 335 | 1 | 335 | 4.43e-137 | 392 |
| MS.gene81846.t1 | MTR_2g047975 | 39.450 | 327 | 167 | 13 | 11 | 323 | 4 | 313 | 2.94e-68 | 216 |
| MS.gene81846.t1 | MTR_4g051000 | 42.909 | 275 | 123 | 8 | 45 | 307 | 25 | 277 | 2.36e-64 | 206 |
| MS.gene81846.t1 | MTR_2g089530 | 42.909 | 275 | 123 | 8 | 45 | 307 | 25 | 277 | 2.36e-64 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81846.t1 | AT3G18050 | 57.785 | 289 | 102 | 6 | 45 | 320 | 42 | 323 | 1.18e-103 | 308 |
| MS.gene81846.t1 | AT4G28100 | 42.222 | 270 | 133 | 9 | 36 | 301 | 26 | 276 | 3.89e-64 | 205 |
Find 73 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAATGTTGTTGGGAAAA+TGG | 0.205495 | 6.4:-53920164 | None:intergenic |
| CTTTAACATAAGATTGTTCT+TGG | 0.214285 | 6.4:-53920198 | None:intergenic |
| CAAGAACAATCTTATGTTAA+AGG | 0.223232 | 6.4:+53920199 | MS.gene81846:CDS |
| TTGTTGGGAAAATGGGATTA+AGG | 0.244672 | 6.4:-53920156 | None:intergenic |
| GTGCTTGAATAGTCTCTATT+TGG | 0.254239 | 6.4:+53920699 | MS.gene81846:CDS |
| TTTGTTATTGTTACTTTGTT+TGG | 0.259799 | 6.4:+53922442 | MS.gene81846:CDS |
| CAACAAAGATTGTGAGCTAA+TGG | 0.271739 | 6.4:+53922217 | MS.gene81846:CDS |
| AGTTCATTTGAGAGAGATAA+AGG | 0.312739 | 6.4:-53920226 | None:intergenic |
| AATGCATCAGGACAGTTAAA+AGG | 0.327802 | 6.4:-53920559 | None:intergenic |
| AGACAAAGTTGGTTGGAGTT+TGG | 0.338347 | 6.4:-53922414 | None:intergenic |
| TATATTGTTATTGTGGGATT+AGG | 0.343357 | 6.4:+53920530 | MS.gene81846:CDS |
| AGAAGAGAATGTAGAGGAAA+AGG | 0.346694 | 6.4:-53920087 | None:intergenic |
| ATCTTTGTTGTGAATCTTTG+TGG | 0.352616 | 6.4:-53922204 | None:intergenic |
| AAGAACAATCTTATGTTAAA+GGG | 0.360626 | 6.4:+53920200 | MS.gene81846:CDS |
| GTTAATGTTGTTGGGAAAAT+GGG | 0.361945 | 6.4:-53920163 | None:intergenic |
| GGTAATGGATTTCAAGGTCT+TGG | 0.363694 | 6.4:+53920664 | MS.gene81846:CDS |
| GCCAAATGAGAGTTGTGATT+TGG | 0.373180 | 6.4:+53920507 | MS.gene81846:CDS |
| TGTTGGGAAAATGGGATTAA+GGG | 0.381048 | 6.4:-53920155 | None:intergenic |
| ACCAAATCACAACTCTCATT+TGG | 0.403979 | 6.4:-53920508 | None:intergenic |
| ATCATCATTTGACATGCCTT+TGG | 0.404706 | 6.4:+53920411 | MS.gene81846:CDS |
| AGGAAAAGGGTGATTAGATA+TGG | 0.411548 | 6.4:-53920073 | None:intergenic |
| AGGGTTGATGATGTTGAGTT+AGG | 0.414598 | 6.4:-53920136 | None:intergenic |
| GAAGGGATTGTTAATGTTGT+TGG | 0.415245 | 6.4:-53920172 | None:intergenic |
| GAAGAGAATGTAGAGGAAAA+GGG | 0.418542 | 6.4:-53920086 | None:intergenic |
| AACAAAGATTGTGAGCTAAT+GGG | 0.418766 | 6.4:+53922218 | MS.gene81846:CDS |
| TAAGATTGTTCTTGGAATGA+AGG | 0.431330 | 6.4:-53920190 | None:intergenic |
| AGAAACATGTGTGGATGGTT+TGG | 0.434390 | 6.4:+53920447 | MS.gene81846:CDS |
| ATTTGGTATATTGTTATTGT+GGG | 0.436772 | 6.4:+53920524 | MS.gene81846:CDS |
| TTGGAGATGGAAGTGTTAGA+AGG | 0.438920 | 6.4:+53920608 | MS.gene81846:CDS |
| GATTTGGTATATTGTTATTG+TGG | 0.440108 | 6.4:+53920523 | MS.gene81846:CDS |
| CATGGCTTCTGTTGAAGAAT+CGG | 0.447260 | 6.4:+53922246 | MS.gene81846:CDS |
| AAGGGATTGTTAATGTTGTT+GGG | 0.448059 | 6.4:-53920171 | None:intergenic |
| AGATGGAAGTGTTAGAAGGT+TGG | 0.448408 | 6.4:+53920612 | MS.gene81846:CDS |
| TTTGTAACAGAAAATGCATC+AGG | 0.450155 | 6.4:-53920571 | None:intergenic |
| TGGAGAAGAATTGCTTGAGT+AGG | 0.462891 | 6.4:+53920632 | MS.gene81846:CDS |
| TCATACTCCTCCACTGCCCT+TGG | 0.468218 | 6.4:+53920352 | MS.gene81846:CDS |
| GCTTTGTTGTTGAACAAAGA+TGG | 0.470689 | 6.4:+53922305 | MS.gene81846:CDS |
| TATAACCATGCTGCAAGAAC+CGG | 0.476225 | 6.4:-53920325 | None:intergenic |
| CGACCGTAGCCGATGCTGTC+CGG | 0.482366 | 6.4:+53920306 | MS.gene81846:CDS |
| AGTGGAGAACTTGTTGGAGA+TGG | 0.493754 | 6.4:+53920595 | MS.gene81846:CDS |
| AAGATTGTTCTTGGAATGAA+GGG | 0.502562 | 6.4:-53920189 | None:intergenic |
| ACACATGTTTCTGAGTCATC+TGG | 0.508643 | 6.4:-53920436 | None:intergenic |
| GAAAAGGCTTTGAAAGTGAG+AGG | 0.517885 | 6.4:+53920469 | MS.gene81846:CDS |
| CTCTCAAATGAACTCTTCAA+TGG | 0.519607 | 6.4:+53920235 | MS.gene81846:CDS |
| ATGTGTGGATGGTTTGGAAA+AGG | 0.525959 | 6.4:+53920453 | MS.gene81846:CDS |
| GTGACGACGACGATGATGAA+TGG | 0.533881 | 6.4:-53920378 | None:intergenic |
| ATTCAAGCAAAGAAGAAGAC+AGG | 0.542446 | 6.4:+53922180 | MS.gene81846:CDS |
| CTATTTAGAGTGCATGATTG+TGG | 0.557315 | 6.4:-53922335 | None:intergenic |
| AATGGATTTCAAGGTCTTGG+AGG | 0.558012 | 6.4:+53920667 | MS.gene81846:CDS |
| AACAAAGAAAGAGACAAAGT+TGG | 0.560500 | 6.4:-53922425 | None:intergenic |
| GCTGTCCGGTTCTTGCAGCA+TGG | 0.562514 | 6.4:+53920320 | MS.gene81846:CDS |
| CTGCAAGAACCGGACAGCAT+CGG | 0.565284 | 6.4:-53920315 | None:intergenic |
| AAGAAAGAGACAAAGTTGGT+TGG | 0.568482 | 6.4:-53922421 | None:intergenic |
| TCATGCACTCTAAATAGTGA+TGG | 0.573743 | 6.4:+53922341 | MS.gene81846:CDS |
| TGAGTGAGACTCATGTAGGA+AGG | 0.575617 | 6.4:-53920112 | None:intergenic |
| ACGATGATGAATGGTTTCCA+AGG | 0.579546 | 6.4:-53920369 | None:intergenic |
| TGAATGGTTTCCAAGGGCAG+TGG | 0.585630 | 6.4:-53920362 | None:intergenic |
| AAGGGAAGAAGAGAATGTAG+AGG | 0.587484 | 6.4:-53920093 | None:intergenic |
| GAACCGGACAGCATCGGCTA+CGG | 0.587763 | 6.4:-53920309 | None:intergenic |
| AGGATGAGTGAGACTCATGT+AGG | 0.588608 | 6.4:-53920116 | None:intergenic |
| TCTGAGTCATCTGGTACCAA+AGG | 0.589351 | 6.4:-53920427 | None:intergenic |
| ATGGTTTCCAAGGGCAGTGG+AGG | 0.590723 | 6.4:-53920359 | None:intergenic |
| AGGGTGATTAGATATGGAAG+TGG | 0.594483 | 6.4:-53920067 | None:intergenic |
| GAGTGAGACTCATGTAGGAA+GGG | 0.607216 | 6.4:-53920111 | None:intergenic |
| TCAGATGAATCAACAGCTAG+AGG | 0.628109 | 6.4:-53922368 | None:intergenic |
| GTGAGCTAATGGGTTTGACA+TGG | 0.629421 | 6.4:+53922228 | MS.gene81846:CDS |
| CGATGATGAATGGTTTCCAA+GGG | 0.634070 | 6.4:-53920368 | None:intergenic |
| GACTCAGAAACATGTGTGGA+TGG | 0.634993 | 6.4:+53920442 | MS.gene81846:CDS |
| GCATGTAGTTCATCAAAACA+TGG | 0.638260 | 6.4:+53920268 | MS.gene81846:CDS |
| GCTTCTGTTGAAGAATCGGA+CGG | 0.659823 | 6.4:+53922250 | MS.gene81846:CDS |
| TCAAATGATGATCTTGATGA+CGG | 0.669101 | 6.4:-53920400 | None:intergenic |
| AGATGACTCAGAAACATGTG+TGG | 0.726363 | 6.4:+53920438 | MS.gene81846:CDS |
| TCGGACGGCATATATTCACA+CGG | 0.774284 | 6.4:+53922265 | MS.gene81846:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAATATAAAATAAAGT+TGG | - | chr6.4:53921180-53921199 | None:intergenic | 10.0% |
| !!! | AAAATTATAATTTTTGTAGA+AGG | - | chr6.4:53920733-53920752 | None:intergenic | 10.0% |
| !! | AATAAGATAAAAACAACTTA+TGG | - | chr6.4:53921100-53921119 | None:intergenic | 15.0% |
| !! | GTTTATAGTTTATATGAAAA+CGG | + | chr6.4:53921153-53921172 | MS.gene81846:intron | 15.0% |
| !!! | AAATCTTGTTTTACAAATAT+AGG | - | chr6.4:53921602-53921621 | None:intergenic | 15.0% |
| !!! | CAATTGTTTATCTATTTTAT+TGG | - | chr6.4:53921776-53921795 | None:intergenic | 15.0% |
| !!! | TATTTTTGCTTATATTTCAT+TGG | - | chr6.4:53920912-53920931 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTAACAAACATTT+TGG | - | chr6.4:53922061-53922080 | None:intergenic | 15.0% |
| !! | AAGAACAATCTTATGTTAAA+GGG | + | chr6.4:53920200-53920219 | MS.gene81846:CDS | 20.0% |
| !! | AAGCAAAAATAGTAGTTAAA+TGG | + | chr6.4:53920921-53920940 | MS.gene81846:intron | 20.0% |
| !! | GATATATGACTCAAATAAAA+TGG | + | chr6.4:53921575-53921594 | MS.gene81846:intron | 20.0% |
| !! | TTATATTTCATTGGAGTATA+TGG | - | chr6.4:53920903-53920922 | None:intergenic | 20.0% |
| !!! | ATTTGGTATATTGTTATTGT+GGG | + | chr6.4:53920524-53920543 | MS.gene81846:CDS | 20.0% |
| !!! | CTTAATTTCTAGAAACATTA+AGG | - | chr6.4:53921390-53921409 | None:intergenic | 20.0% |
| !!! | TTTATCTATTTTATTGGTTG+AGG | - | chr6.4:53921770-53921789 | None:intergenic | 20.0% |
| !!! | TTTGTTATTGTTACTTTGTT+TGG | + | chr6.4:53922442-53922461 | MS.gene81846:CDS | 20.0% |
| !!! | TTTTTCTTCTATTCTATCTA+TGG | + | chr6.4:53920751-53920770 | MS.gene81846:intron | 20.0% |
| ! | CAAGAACAATCTTATGTTAA+AGG | + | chr6.4:53920199-53920218 | MS.gene81846:CDS | 25.0% |
| ! | CTTTAACATAAGATTGTTCT+TGG | - | chr6.4:53920201-53920220 | None:intergenic | 25.0% |
| ! | TGTATTAAGAAGAAGGTTTA+GGG | - | chr6.4:53921891-53921910 | None:intergenic | 25.0% |
| !! | GATTTGGTATATTGTTATTG+TGG | + | chr6.4:53920523-53920542 | MS.gene81846:CDS | 25.0% |
| !! | TATATTGTTATTGTGGGATT+AGG | + | chr6.4:53920530-53920549 | MS.gene81846:CDS | 25.0% |
| !! | TTTTGTGACATTGAATTTGA+TGG | + | chr6.4:53920800-53920819 | MS.gene81846:intron | 25.0% |
| !! | TTTTTGCTTATATTTCGTTC+CGG | + | chr6.4:53920976-53920995 | MS.gene81846:intron | 25.0% |
| !!! | AAAAATGGTAATGGATTTCA+AGG | + | chr6.4:53920658-53920677 | MS.gene81846:CDS | 25.0% |
| !!! | ATGTTTTGATGTTCTTTGTT+TGG | + | chr6.4:53920775-53920794 | MS.gene81846:intron | 25.0% |
| !!! | TAACTCTCTTTTGATAACTT+TGG | + | chr6.4:53921515-53921534 | MS.gene81846:intron | 25.0% |
| AACAAAGAAAGAGACAAAGT+TGG | - | chr6.4:53922428-53922447 | None:intergenic | 30.0% | |
| AACAAAGATTGTGAGCTAAT+GGG | + | chr6.4:53922218-53922237 | MS.gene81846:CDS | 30.0% | |
| AACCATCATACATTGATGTT+TGG | - | chr6.4:53921275-53921294 | None:intergenic | 30.0% | |
| AAGATTGTTCTTGGAATGAA+GGG | - | chr6.4:53920192-53920211 | None:intergenic | 30.0% | |
| AAGGGATTGTTAATGTTGTT+GGG | - | chr6.4:53920174-53920193 | None:intergenic | 30.0% | |
| AGTAGGAAGAAAAATGGTAA+TGG | + | chr6.4:53920649-53920668 | MS.gene81846:CDS | 30.0% | |
| AGTTCATTTGAGAGAGATAA+AGG | - | chr6.4:53920229-53920248 | None:intergenic | 30.0% | |
| ATCCAAACATCAATGTATGA+TGG | + | chr6.4:53921270-53921289 | MS.gene81846:intron | 30.0% | |
| ATCTTCAAAACTCTACTTCA+AGG | - | chr6.4:53922012-53922031 | None:intergenic | 30.0% | |
| ATGATAGCATAAAAGAGGTT+TGG | - | chr6.4:53922095-53922114 | None:intergenic | 30.0% | |
| CACACACTTAAACTTTGATT+AGG | + | chr6.4:53921967-53921986 | MS.gene81846:intron | 30.0% | |
| CTACATAAACCTAGTCAATT+TGG | + | chr6.4:53921669-53921688 | MS.gene81846:intron | 30.0% | |
| GAATGATGATAGCATAAAAG+AGG | - | chr6.4:53922100-53922119 | None:intergenic | 30.0% | |
| GCTGAAAATTGATGAAGATT+GGG | + | chr6.4:53920828-53920847 | MS.gene81846:intron | 30.0% | |
| GGTAATTTATTAGAGAGAGA+GGG | + | chr6.4:53921841-53921860 | MS.gene81846:intron | 30.0% | |
| GTGTATTAAGAAGAAGGTTT+AGG | - | chr6.4:53921892-53921911 | None:intergenic | 30.0% | |
| GTTAATGTTGTTGGGAAAAT+GGG | - | chr6.4:53920166-53920185 | None:intergenic | 30.0% | |
| TAAGATTGTTCTTGGAATGA+AGG | - | chr6.4:53920193-53920212 | None:intergenic | 30.0% | |
| TAGGTTCTGTAGTTTAGATA+TGG | + | chr6.4:53921449-53921468 | MS.gene81846:intron | 30.0% | |
| TCAAATGATGATCTTGATGA+CGG | - | chr6.4:53920403-53920422 | None:intergenic | 30.0% | |
| TGCTGAAAATTGATGAAGAT+TGG | + | chr6.4:53920827-53920846 | MS.gene81846:intron | 30.0% | |
| TGCTGTAACATTTACTCAAA+GGG | - | chr6.4:53922037-53922056 | None:intergenic | 30.0% | |
| TGTTAATGTTGTTGGGAAAA+TGG | - | chr6.4:53920167-53920186 | None:intergenic | 30.0% | |
| TTGCTGTAACATTTACTCAA+AGG | - | chr6.4:53922038-53922057 | None:intergenic | 30.0% | |
| TTTGTAACAGAAAATGCATC+AGG | - | chr6.4:53920574-53920593 | None:intergenic | 30.0% | |
| ! | AGTTAAATGGTTGATGTAAG+TGG | + | chr6.4:53920934-53920953 | MS.gene81846:intron | 30.0% |
| ! | ATCTTTGTTGTGAATCTTTG+TGG | - | chr6.4:53922207-53922226 | None:intergenic | 30.0% |
| ! | GCATTTTCTGTTACAAAAAG+TGG | + | chr6.4:53920577-53920596 | MS.gene81846:CDS | 30.0% |
| ! | TTTTTCCTGCAAATGTAAGT+GGG | + | chr6.4:53921820-53921839 | MS.gene81846:intron | 30.0% |
| !! | ATGTTCTTCTTTTTAGTGCA+AGG | + | chr6.4:53921692-53921711 | MS.gene81846:intron | 30.0% |
| !!! | GAAGTGTTTTTTCAATGCTT+TGG | + | chr6.4:53921302-53921321 | MS.gene81846:intron | 30.0% |
| !!! | TTTTTTCCTGCAAATGTAAG+TGG | + | chr6.4:53921819-53921838 | MS.gene81846:intron | 30.0% |
| AAGCTATGCTAGAGAGTTTA+TGG | - | chr6.4:53921124-53921143 | None:intergenic | 35.0% | |
| AATGCATCAGGACAGTTAAA+AGG | - | chr6.4:53920562-53920581 | None:intergenic | 35.0% | |
| AATTACCCACTTACATTTGC+AGG | - | chr6.4:53921828-53921847 | None:intergenic | 35.0% | |
| ACAAAAAGTGGAGAACTTGT+TGG | + | chr6.4:53920589-53920608 | MS.gene81846:CDS | 35.0% | |
| ACCAAATCACAACTCTCATT+TGG | - | chr6.4:53920511-53920530 | None:intergenic | 35.0% | |
| AGAAGAGAATGTAGAGGAAA+AGG | - | chr6.4:53920090-53920109 | None:intergenic | 35.0% | |
| AGGAAAAGGGTGATTAGATA+TGG | - | chr6.4:53920076-53920095 | None:intergenic | 35.0% | |
| ATCATCATTTGACATGCCTT+TGG | + | chr6.4:53920411-53920430 | MS.gene81846:CDS | 35.0% | |
| ATGACATTAAAGTGTACCAG+TGG | - | chr6.4:53921346-53921365 | None:intergenic | 35.0% | |
| ATGTCACTATCTTGGTACAA+CGG | + | chr6.4:53921418-53921437 | MS.gene81846:intron | 35.0% | |
| ATTCAAGCAAAGAAGAAGAC+AGG | + | chr6.4:53922180-53922199 | MS.gene81846:CDS | 35.0% | |
| CAACAAAGATTGTGAGCTAA+TGG | + | chr6.4:53922217-53922236 | MS.gene81846:CDS | 35.0% | |
| CTCTCAAATGAACTCTTCAA+TGG | + | chr6.4:53920235-53920254 | MS.gene81846:CDS | 35.0% | |
| GAAGAACATCCAAATTGACT+AGG | - | chr6.4:53921681-53921700 | None:intergenic | 35.0% | |
| GAAGAGAATGTAGAGGAAAA+GGG | - | chr6.4:53920089-53920108 | None:intergenic | 35.0% | |
| GAAGGGATTGTTAATGTTGT+TGG | - | chr6.4:53920175-53920194 | None:intergenic | 35.0% | |
| GATGAAGATTGGGTTATGTT+TGG | + | chr6.4:53920838-53920857 | MS.gene81846:intron | 35.0% | |
| GCATGTAGTTCATCAAAACA+TGG | + | chr6.4:53920268-53920287 | MS.gene81846:CDS | 35.0% | |
| GGGTAATTTATTAGAGAGAG+AGG | + | chr6.4:53921840-53921859 | MS.gene81846:intron | 35.0% | |
| GTGCTTGAATAGTCTCTATT+TGG | + | chr6.4:53920699-53920718 | MS.gene81846:CDS | 35.0% | |
| TAGCTTAGTTGATCGCTTAT+AGG | - | chr6.4:53921247-53921266 | None:intergenic | 35.0% | |
| TCATGCACTCTAAATAGTGA+TGG | + | chr6.4:53922341-53922360 | MS.gene81846:CDS | 35.0% | |
| TGCTTGAGTAGGAAGAAAAA+TGG | + | chr6.4:53920643-53920662 | MS.gene81846:CDS | 35.0% | |
| TGGTACAACGGAATAACTTT+AGG | + | chr6.4:53921430-53921449 | MS.gene81846:intron | 35.0% | |
| TGTTGGGAAAATGGGATTAA+GGG | - | chr6.4:53920158-53920177 | None:intergenic | 35.0% | |
| TTGTTGGGAAAATGGGATTA+AGG | - | chr6.4:53920159-53920178 | None:intergenic | 35.0% | |
| ! | AAGAAAGAGACAAAGTTGGT+TGG | - | chr6.4:53922424-53922443 | None:intergenic | 35.0% |
| ! | CTATTTAGAGTGCATGATTG+TGG | - | chr6.4:53922338-53922357 | None:intergenic | 35.0% |
| ! | GAAGGTGTGTATTAAGAAGA+AGG | - | chr6.4:53921898-53921917 | None:intergenic | 35.0% |
| !! | GCTTTGTTGTTGAACAAAGA+TGG | + | chr6.4:53922305-53922324 | MS.gene81846:CDS | 35.0% |
| AAGGGAAGAAGAGAATGTAG+AGG | - | chr6.4:53920096-53920115 | None:intergenic | 40.0% | |
| ACGATGATGAATGGTTTCCA+AGG | - | chr6.4:53920372-53920391 | None:intergenic | 40.0% | |
| AGAAACATGTGTGGATGGTT+TGG | + | chr6.4:53920447-53920466 | MS.gene81846:CDS | 40.0% | |
| AGATGACTCAGAAACATGTG+TGG | + | chr6.4:53920438-53920457 | MS.gene81846:CDS | 40.0% | |
| AGGGTGATTAGATATGGAAG+TGG | - | chr6.4:53920070-53920089 | None:intergenic | 40.0% | |
| ATCCCATGAAACACTTACTC+CGG | - | chr6.4:53920998-53921017 | None:intergenic | 40.0% | |
| CACATGCAATGTCACTATCT+TGG | + | chr6.4:53921410-53921429 | MS.gene81846:intron | 40.0% | |
| CATGGCTTCTGTTGAAGAAT+CGG | + | chr6.4:53922246-53922265 | MS.gene81846:CDS | 40.0% | |
| CGATGATGAATGGTTTCCAA+GGG | - | chr6.4:53920371-53920390 | None:intergenic | 40.0% | |
| GCCAAATGAGAGTTGTGATT+TGG | + | chr6.4:53920507-53920526 | MS.gene81846:CDS | 40.0% | |
| TATAACCATGCTGCAAGAAC+CGG | - | chr6.4:53920328-53920347 | None:intergenic | 40.0% | |
| TCAGATGAATCAACAGCTAG+AGG | - | chr6.4:53922371-53922390 | None:intergenic | 40.0% | |
| TGGAGAAGAATTGCTTGAGT+AGG | + | chr6.4:53920632-53920651 | MS.gene81846:CDS | 40.0% | |
| TTCCGGAGTAAGTGTTTCAT+GGG | + | chr6.4:53920993-53921012 | MS.gene81846:intron | 40.0% | |
| ! | AATGGATTTCAAGGTCTTGG+AGG | + | chr6.4:53920667-53920686 | MS.gene81846:CDS | 40.0% |
| ! | ACACATGTTTCTGAGTCATC+TGG | - | chr6.4:53920439-53920458 | None:intergenic | 40.0% |
| ! | AGACAAAGTTGGTTGGAGTT+TGG | - | chr6.4:53922417-53922436 | None:intergenic | 40.0% |
| ! | ATGTGTGGATGGTTTGGAAA+AGG | + | chr6.4:53920453-53920472 | MS.gene81846:CDS | 40.0% |
| !! | AGATGGAAGTGTTAGAAGGT+TGG | + | chr6.4:53920612-53920631 | MS.gene81846:CDS | 40.0% |
| !! | AGGGTTGATGATGTTGAGTT+AGG | - | chr6.4:53920139-53920158 | None:intergenic | 40.0% |
| !! | GAAAAGGCTTTGAAAGTGAG+AGG | + | chr6.4:53920469-53920488 | MS.gene81846:CDS | 40.0% |
| !! | GGTAATGGATTTCAAGGTCT+TGG | + | chr6.4:53920664-53920683 | MS.gene81846:CDS | 40.0% |
| !! | TTGGAGATGGAAGTGTTAGA+AGG | + | chr6.4:53920608-53920627 | MS.gene81846:CDS | 40.0% |
| AAGGTGTAGTCCGCTAATAC+GGG | - | chr6.4:53921931-53921950 | None:intergenic | 45.0% | |
| AGGATGAGTGAGACTCATGT+AGG | - | chr6.4:53920119-53920138 | None:intergenic | 45.0% | |
| CTGTGTAGTTCATAGACCAC+TGG | + | chr6.4:53921327-53921346 | MS.gene81846:intron | 45.0% | |
| GACTCAGAAACATGTGTGGA+TGG | + | chr6.4:53920442-53920461 | MS.gene81846:CDS | 45.0% | |
| GAGTGAGACTCATGTAGGAA+GGG | - | chr6.4:53920114-53920133 | None:intergenic | 45.0% | |
| GCTTCTGTTGAAGAATCGGA+CGG | + | chr6.4:53922250-53922269 | MS.gene81846:CDS | 45.0% | |
| GTGACAAAATGTGTGTCCGA+AGG | - | chr6.4:53921950-53921969 | None:intergenic | 45.0% | |
| GTTCCGGAGTAAGTGTTTCA+TGG | + | chr6.4:53920992-53921011 | MS.gene81846:intron | 45.0% | |
| TCGGACGGCATATATTCACA+CGG | + | chr6.4:53922265-53922284 | MS.gene81846:CDS | 45.0% | |
| TCTGAGTCATCTGGTACCAA+AGG | - | chr6.4:53920430-53920449 | None:intergenic | 45.0% | |
| TGAGTGAGACTCATGTAGGA+AGG | - | chr6.4:53920115-53920134 | None:intergenic | 45.0% | |
| ! | GAAGGTGTAGTCCGCTAATA+CGG | - | chr6.4:53921932-53921951 | None:intergenic | 45.0% |
| !! | AGTGGAGAACTTGTTGGAGA+TGG | + | chr6.4:53920595-53920614 | MS.gene81846:CDS | 45.0% |
| !! | GTATTAGCGGACTACACCTT+CGG | + | chr6.4:53921931-53921950 | MS.gene81846:intron | 45.0% |
| !! | GTGAGCTAATGGGTTTGACA+TGG | + | chr6.4:53922228-53922247 | MS.gene81846:CDS | 45.0% |
| GTAGTCCGCTAATACGGGTT+GGG | - | chr6.4:53921926-53921945 | None:intergenic | 50.0% | |
| GTGACGACGACGATGATGAA+TGG | - | chr6.4:53920381-53920400 | None:intergenic | 50.0% | |
| GTTGTCCCAACCCGTATTAG+CGG | + | chr6.4:53921918-53921937 | MS.gene81846:intron | 50.0% | |
| TGAATGGTTTCCAAGGGCAG+TGG | - | chr6.4:53920365-53920384 | None:intergenic | 50.0% | |
| TGTAGTCCGCTAATACGGGT+TGG | - | chr6.4:53921927-53921946 | None:intergenic | 50.0% | |
| !! | AATACGGGTTGGGACAACGA+AGG | - | chr6.4:53921916-53921935 | None:intergenic | 50.0% |
| ATGGTTTCCAAGGGCAGTGG+AGG | - | chr6.4:53920362-53920381 | None:intergenic | 55.0% | |
| CTGCAAGAACCGGACAGCAT+CGG | - | chr6.4:53920318-53920337 | None:intergenic | 55.0% | |
| TCATACTCCTCCACTGCCCT+TGG | + | chr6.4:53920352-53920371 | MS.gene81846:CDS | 55.0% | |
| GCTGTCCGGTTCTTGCAGCA+TGG | + | chr6.4:53920320-53920339 | MS.gene81846:CDS | 60.0% | |
| !! | GAACCGGACAGCATCGGCTA+CGG | - | chr6.4:53920312-53920331 | None:intergenic | 60.0% |
| CGACCGTAGCCGATGCTGTC+CGG | + | chr6.4:53920306-53920325 | MS.gene81846:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 53920052 | 53922499 | 53920052 | ID=MS.gene81846 |
| chr6.4 | mRNA | 53920052 | 53922499 | 53920052 | ID=MS.gene81846.t1;Parent=MS.gene81846 |
| chr6.4 | exon | 53920052 | 53920720 | 53920052 | ID=MS.gene81846.t1.exon1;Parent=MS.gene81846.t1 |
| chr6.4 | CDS | 53920052 | 53920720 | 53920052 | ID=cds.MS.gene81846.t1;Parent=MS.gene81846.t1 |
| chr6.4 | exon | 53922161 | 53922499 | 53922161 | ID=MS.gene81846.t1.exon2;Parent=MS.gene81846.t1 |
| chr6.4 | CDS | 53922161 | 53922499 | 53922161 | ID=cds.MS.gene81846.t1;Parent=MS.gene81846.t1 |
| Gene Sequence |
| Protein sequence |
