Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05296.t1 | XP_013442679.1 | 96.6 | 320 | 10 | 1 | 16 | 335 | 18 | 336 | 8.40E-165 | 589.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05296.t1 | Q9SUC9 | 40.4 | 324 | 159 | 9 | 10 | 325 | 7 | 304 | 1.7e-49 | 198.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05296.t1 | G8A0D6 | 96.6 | 320 | 10 | 1 | 16 | 335 | 18 | 336 | 6.0e-165 | 589.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05296 | MS.gene062849 | 0.802209 | 6.25E-49 | -1.69E-46 |
| MS.gene05296 | MS.gene063268 | 0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene05296 | MS.gene073963 | 0.807925 | 3.98E-50 | -1.69E-46 |
| MS.gene05296 | MS.gene79474 | 0.802152 | 6.43E-49 | -1.69E-46 |
| MS.gene05296 | MS.gene81846 | 0.854965 | 8.66E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05296.t1 | MTR_0110s0010 | 95.821 | 335 | 13 | 1 | 1 | 335 | 3 | 336 | 0.0 | 643 |
| MS.gene05296.t1 | MTR_8g106870 | 62.609 | 345 | 107 | 9 | 3 | 335 | 1 | 335 | 1.57e-137 | 394 |
| MS.gene05296.t1 | MTR_2g047975 | 39.144 | 327 | 168 | 13 | 11 | 323 | 4 | 313 | 1.84e-67 | 214 |
| MS.gene05296.t1 | MTR_4g051000 | 42.545 | 275 | 124 | 8 | 45 | 307 | 25 | 277 | 1.02e-63 | 204 |
| MS.gene05296.t1 | MTR_2g089530 | 42.545 | 275 | 124 | 8 | 45 | 307 | 25 | 277 | 1.02e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05296.t1 | AT3G18050 | 57.785 | 289 | 102 | 6 | 45 | 320 | 42 | 323 | 2.03e-104 | 310 |
| MS.gene05296.t1 | AT4G28100 | 41.852 | 270 | 134 | 8 | 36 | 301 | 26 | 276 | 6.58e-65 | 207 |
Find 72 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTAATGTTGTTGGGAAAA+TGG | 0.205495 | 6.3:-74258021 | None:intergenic |
| CTTTAACATAAGATTGTTCT+TGG | 0.214285 | 6.3:-74258055 | None:intergenic |
| CAAGAACAATCTTATGTTAA+AGG | 0.223232 | 6.3:+74258056 | MS.gene05296:CDS |
| TTGTTGGGAAAATGGGATTA+AGG | 0.244672 | 6.3:-74258013 | None:intergenic |
| GTGCTTGAATAGTCTCTATT+TGG | 0.254239 | 6.3:+74258556 | MS.gene05296:CDS |
| TTTGTTATTGTTACTTTGTT+TGG | 0.259799 | 6.3:+74260296 | MS.gene05296:CDS |
| CAACAAAGATTGTGAGCTAA+TGG | 0.271739 | 6.3:+74260071 | MS.gene05296:CDS |
| AGTTCATTTGAGAGAGATAA+AGG | 0.312739 | 6.3:-74258083 | None:intergenic |
| AATGCATCAGGACAGTTAAA+AGG | 0.327802 | 6.3:-74258416 | None:intergenic |
| AGACAAAGTTGGTTGGAGTT+TGG | 0.338347 | 6.3:-74260268 | None:intergenic |
| TATATTGTTATTGTGGGATT+AGG | 0.343357 | 6.3:+74258387 | MS.gene05296:CDS |
| AGAAGAGAATGTAGAGGAAA+AGG | 0.346694 | 6.3:-74257944 | None:intergenic |
| ATCTTTGTTGTGAATCTTTG+TGG | 0.352616 | 6.3:-74260058 | None:intergenic |
| AAGAACAATCTTATGTTAAA+GGG | 0.360626 | 6.3:+74258057 | MS.gene05296:CDS |
| GTTAATGTTGTTGGGAAAAT+GGG | 0.361945 | 6.3:-74258020 | None:intergenic |
| GGTAATGGATTTCAAGGTCT+TGG | 0.363694 | 6.3:+74258521 | MS.gene05296:CDS |
| GCCAAATGAGAGTTGTGATT+TGG | 0.373180 | 6.3:+74258364 | MS.gene05296:CDS |
| TGTTGGGAAAATGGGATTAA+GGG | 0.381048 | 6.3:-74258012 | None:intergenic |
| ACCAAATCACAACTCTCATT+TGG | 0.403979 | 6.3:-74258365 | None:intergenic |
| ATCATCATTTGACATGCCTT+TGG | 0.404706 | 6.3:+74258268 | MS.gene05296:CDS |
| AGGAAAAGGGTGATTAGATA+TGG | 0.411548 | 6.3:-74257930 | None:intergenic |
| AGGGTTGATGATGTTGAGTT+AGG | 0.414598 | 6.3:-74257993 | None:intergenic |
| GAAGGGATTGTTAATGTTGT+TGG | 0.415245 | 6.3:-74258029 | None:intergenic |
| GAAGAGAATGTAGAGGAAAA+GGG | 0.418542 | 6.3:-74257943 | None:intergenic |
| AACAAAGATTGTGAGCTAAT+GGG | 0.418766 | 6.3:+74260072 | MS.gene05296:CDS |
| TAAGATTGTTCTTGGAATGA+AGG | 0.431330 | 6.3:-74258047 | None:intergenic |
| CATGGCTTCTGTCGAAGAAT+CGG | 0.431525 | 6.3:+74260100 | MS.gene05296:CDS |
| AGAAACATGTGTGGATGGTT+TGG | 0.434390 | 6.3:+74258304 | MS.gene05296:CDS |
| ATTTGGTATATTGTTATTGT+GGG | 0.436772 | 6.3:+74258381 | MS.gene05296:CDS |
| TTGGAGATGGAAGTGTTAGA+AGG | 0.438920 | 6.3:+74258465 | MS.gene05296:CDS |
| GATTTGGTATATTGTTATTG+TGG | 0.440108 | 6.3:+74258380 | MS.gene05296:CDS |
| AAGGGATTGTTAATGTTGTT+GGG | 0.448059 | 6.3:-74258028 | None:intergenic |
| AGATGGAAGTGTTAGAAGGT+TGG | 0.448408 | 6.3:+74258469 | MS.gene05296:CDS |
| TTTGTAACAGAAAATGCATC+AGG | 0.450155 | 6.3:-74258428 | None:intergenic |
| TGGAGAAGAATTGCTTGAGT+AGG | 0.462891 | 6.3:+74258489 | MS.gene05296:CDS |
| TCATACTCCTCCACTGCCCT+TGG | 0.468218 | 6.3:+74258209 | MS.gene05296:CDS |
| GCTTTGTTGTTGAACAAAGA+TGG | 0.470689 | 6.3:+74260159 | MS.gene05296:CDS |
| TATAACCATGCTGCAAGAAC+CGG | 0.476225 | 6.3:-74258182 | None:intergenic |
| CGACCGTAGCCGATGCTGTC+CGG | 0.482366 | 6.3:+74258163 | MS.gene05296:CDS |
| AGTGGAGAACTTGTTGGAGA+TGG | 0.493754 | 6.3:+74258452 | MS.gene05296:CDS |
| AAGATTGTTCTTGGAATGAA+GGG | 0.502562 | 6.3:-74258046 | None:intergenic |
| ACACATGTTTCTGAGTCATC+TGG | 0.508643 | 6.3:-74258293 | None:intergenic |
| GAAAAGGCTTTGAAAGTGAG+AGG | 0.517885 | 6.3:+74258326 | MS.gene05296:CDS |
| CTCTCAAATGAACTCTTCAA+TGG | 0.519607 | 6.3:+74258092 | MS.gene05296:CDS |
| ATGTGTGGATGGTTTGGAAA+AGG | 0.525959 | 6.3:+74258310 | MS.gene05296:CDS |
| ATGACGACGACGATGATGAA+TGG | 0.533881 | 6.3:-74258235 | None:intergenic |
| ATTCAAGCAAAGAAGAAGAC+AGG | 0.542446 | 6.3:+74260034 | MS.gene05296:CDS |
| CTATTTAGAGTGCATGATTG+TGG | 0.557315 | 6.3:-74260189 | None:intergenic |
| AATGGATTTCAAGGTCTTGG+AGG | 0.558012 | 6.3:+74258524 | MS.gene05296:CDS |
| AACAAAGAAAGAGACAAAGT+TGG | 0.560500 | 6.3:-74260279 | None:intergenic |
| GCTGTCCGGTTCTTGCAGCA+TGG | 0.562514 | 6.3:+74258177 | MS.gene05296:CDS |
| CTGCAAGAACCGGACAGCAT+CGG | 0.565284 | 6.3:-74258172 | None:intergenic |
| AAGAAAGAGACAAAGTTGGT+TGG | 0.568482 | 6.3:-74260275 | None:intergenic |
| TCATGCACTCTAAATAGTGA+TGG | 0.573743 | 6.3:+74260195 | MS.gene05296:CDS |
| TGAGTGAGACTCATGTAGGA+AGG | 0.575617 | 6.3:-74257969 | None:intergenic |
| ACGATGATGAATGGTTTCCA+AGG | 0.579546 | 6.3:-74258226 | None:intergenic |
| TGAATGGTTTCCAAGGGCAG+TGG | 0.585630 | 6.3:-74258219 | None:intergenic |
| AAGGGAAGAAGAGAATGTAG+AGG | 0.587484 | 6.3:-74257950 | None:intergenic |
| GAACCGGACAGCATCGGCTA+CGG | 0.587763 | 6.3:-74258166 | None:intergenic |
| AGGATGAGTGAGACTCATGT+AGG | 0.588608 | 6.3:-74257973 | None:intergenic |
| TCTGAGTCATCTGGTACCAA+AGG | 0.589351 | 6.3:-74258284 | None:intergenic |
| ATGGTTTCCAAGGGCAGTGG+AGG | 0.590723 | 6.3:-74258216 | None:intergenic |
| AGGGTGATTAGATATGGAAG+TGG | 0.594483 | 6.3:-74257924 | None:intergenic |
| GAGTGAGACTCATGTAGGAA+GGG | 0.607216 | 6.3:-74257968 | None:intergenic |
| TCAGATGAATCAACAGCTAG+AGG | 0.628109 | 6.3:-74260222 | None:intergenic |
| GTGAGCTAATGGGTTTGACA+TGG | 0.629421 | 6.3:+74260082 | MS.gene05296:CDS |
| CGATGATGAATGGTTTCCAA+GGG | 0.634070 | 6.3:-74258225 | None:intergenic |
| GACTCAGAAACATGTGTGGA+TGG | 0.634993 | 6.3:+74258299 | MS.gene05296:CDS |
| GCATGTAGTTCATCAAAACA+TGG | 0.638260 | 6.3:+74258125 | MS.gene05296:CDS |
| GCTTCTGTCGAAGAATCGGA+CGG | 0.693830 | 6.3:+74260104 | MS.gene05296:CDS |
| AGATGACTCAGAAACATGTG+TGG | 0.726363 | 6.3:+74258295 | MS.gene05296:CDS |
| TCGGACGGCATATATTCACA+CGG | 0.774284 | 6.3:+74260119 | MS.gene05296:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAATATAAAATAAAGT+TGG | - | chr6.3:74259036-74259055 | None:intergenic | 10.0% |
| !!! | AAAATTATAATTTTTGTAGA+AGG | - | chr6.3:74258590-74258609 | None:intergenic | 10.0% |
| !! | AATAAGATAAAAACAACTTA+TGG | - | chr6.3:74258956-74258975 | None:intergenic | 15.0% |
| !! | GTTTATAGTTTATATGAAAA+CGG | + | chr6.3:74259009-74259028 | MS.gene05296:intron | 15.0% |
| !!! | AAATCTTGTTTTACAAATAT+AGG | - | chr6.3:74259458-74259477 | None:intergenic | 15.0% |
| !!! | CAATTGTTTATCTATTTTAT+TGG | - | chr6.3:74259632-74259651 | None:intergenic | 15.0% |
| !!! | TATTTTTGCTTATATTTCAT+TGG | - | chr6.3:74258768-74258787 | None:intergenic | 15.0% |
| !!! | TTTTTAAGTAACAAACATTT+TGG | - | chr6.3:74259915-74259934 | None:intergenic | 15.0% |
| !! | AAGAACAATCTTATGTTAAA+GGG | + | chr6.3:74258057-74258076 | MS.gene05296:CDS | 20.0% |
| !! | AAGCAAAAATAGTAGTTAAA+TGG | + | chr6.3:74258777-74258796 | MS.gene05296:intron | 20.0% |
| !! | GATATATGACTCAAATAAAA+TGG | + | chr6.3:74259431-74259450 | MS.gene05296:intron | 20.0% |
| !! | TTATATTTCATTGGAGTATA+TGG | - | chr6.3:74258759-74258778 | None:intergenic | 20.0% |
| !!! | ATTTGGTATATTGTTATTGT+GGG | + | chr6.3:74258381-74258400 | MS.gene05296:CDS | 20.0% |
| !!! | CTTAATTTCTAGAAACATTA+AGG | - | chr6.3:74259246-74259265 | None:intergenic | 20.0% |
| !!! | TTTATCTATTTTATTGGTTG+AGG | - | chr6.3:74259626-74259645 | None:intergenic | 20.0% |
| !!! | TTTGTTATTGTTACTTTGTT+TGG | + | chr6.3:74260296-74260315 | MS.gene05296:CDS | 20.0% |
| !!! | TTTTTCTTCTATTCTATCTA+TGG | + | chr6.3:74258608-74258627 | MS.gene05296:intron | 20.0% |
| ! | CAAGAACAATCTTATGTTAA+AGG | + | chr6.3:74258056-74258075 | MS.gene05296:CDS | 25.0% |
| ! | CTTTAACATAAGATTGTTCT+TGG | - | chr6.3:74258058-74258077 | None:intergenic | 25.0% |
| ! | GGTAATTTATTAGAGAGAAA+GGG | + | chr6.3:74259695-74259714 | MS.gene05296:intron | 25.0% |
| ! | TGTATTAAGAAGAAGGTTTA+GGG | - | chr6.3:74259745-74259764 | None:intergenic | 25.0% |
| !! | GATTTGGTATATTGTTATTG+TGG | + | chr6.3:74258380-74258399 | MS.gene05296:CDS | 25.0% |
| !! | TATATTGTTATTGTGGGATT+AGG | + | chr6.3:74258387-74258406 | MS.gene05296:CDS | 25.0% |
| !! | TTTTGTGACATTGAATTTGA+TGG | + | chr6.3:74258657-74258676 | MS.gene05296:intron | 25.0% |
| !! | TTTTTGCTTATATTTCGTTC+CGG | + | chr6.3:74258832-74258851 | MS.gene05296:intron | 25.0% |
| !!! | AAAAATGGTAATGGATTTCA+AGG | + | chr6.3:74258515-74258534 | MS.gene05296:CDS | 25.0% |
| !!! | ATGTTTTGATGTTCTTTGTT+TGG | + | chr6.3:74258632-74258651 | MS.gene05296:intron | 25.0% |
| !!! | TAACTCTCTTTTGATAACTT+TGG | + | chr6.3:74259371-74259390 | MS.gene05296:intron | 25.0% |
| AACAAAGAAAGAGACAAAGT+TGG | - | chr6.3:74260282-74260301 | None:intergenic | 30.0% | |
| AACAAAGATTGTGAGCTAAT+GGG | + | chr6.3:74260072-74260091 | MS.gene05296:CDS | 30.0% | |
| AACCATCATACATTGATGTT+TGG | - | chr6.3:74259131-74259150 | None:intergenic | 30.0% | |
| AAGATTGTTCTTGGAATGAA+GGG | - | chr6.3:74258049-74258068 | None:intergenic | 30.0% | |
| AAGGGATTGTTAATGTTGTT+GGG | - | chr6.3:74258031-74258050 | None:intergenic | 30.0% | |
| AGTAGGAAGAAAAATGGTAA+TGG | + | chr6.3:74258506-74258525 | MS.gene05296:CDS | 30.0% | |
| AGTTCATTTGAGAGAGATAA+AGG | - | chr6.3:74258086-74258105 | None:intergenic | 30.0% | |
| ATCCAAACATCAATGTATGA+TGG | + | chr6.3:74259126-74259145 | MS.gene05296:intron | 30.0% | |
| ATCTTCAAAACTCTACTTCA+AGG | - | chr6.3:74259866-74259885 | None:intergenic | 30.0% | |
| ATGATAGCATAAAAGAGGTT+TGG | - | chr6.3:74259949-74259968 | None:intergenic | 30.0% | |
| CACACACTTAAACTTTGATT+AGG | + | chr6.3:74259821-74259840 | MS.gene05296:intron | 30.0% | |
| CTACATAAACCTAGTCAATT+TGG | + | chr6.3:74259525-74259544 | MS.gene05296:intron | 30.0% | |
| GAATGATGATAGCATAAAAG+AGG | - | chr6.3:74259954-74259973 | None:intergenic | 30.0% | |
| GGGTAATTTATTAGAGAGAA+AGG | + | chr6.3:74259694-74259713 | MS.gene05296:intron | 30.0% | |
| GTGTATTAAGAAGAAGGTTT+AGG | - | chr6.3:74259746-74259765 | None:intergenic | 30.0% | |
| GTTAATGTTGTTGGGAAAAT+GGG | - | chr6.3:74258023-74258042 | None:intergenic | 30.0% | |
| TAAGATTGTTCTTGGAATGA+AGG | - | chr6.3:74258050-74258069 | None:intergenic | 30.0% | |
| TAGGTTCTGTAGTTTAGATA+TGG | + | chr6.3:74259305-74259324 | MS.gene05296:intron | 30.0% | |
| TGCTGAAATTGATGAAGATT+GGG | + | chr6.3:74258684-74258703 | MS.gene05296:intron | 30.0% | |
| TGCTGTAACATTTACTCAAA+GGG | - | chr6.3:74259891-74259910 | None:intergenic | 30.0% | |
| TGTTAATGTTGTTGGGAAAA+TGG | - | chr6.3:74258024-74258043 | None:intergenic | 30.0% | |
| TTGCTGAAATTGATGAAGAT+TGG | + | chr6.3:74258683-74258702 | MS.gene05296:intron | 30.0% | |
| TTGCTGTAACATTTACTCAA+AGG | - | chr6.3:74259892-74259911 | None:intergenic | 30.0% | |
| TTTGTAACAGAAAATGCATC+AGG | - | chr6.3:74258431-74258450 | None:intergenic | 30.0% | |
| ! | ATCTTTGTTGTGAATCTTTG+TGG | - | chr6.3:74260061-74260080 | None:intergenic | 30.0% |
| ! | GCATTTTCTGTTACAAAAAG+TGG | + | chr6.3:74258434-74258453 | MS.gene05296:CDS | 30.0% |
| ! | TTTTTCCTGCAAATGTAAGT+GGG | + | chr6.3:74259674-74259693 | MS.gene05296:intron | 30.0% |
| !! | ATGTTCTTCTTTTTAGTGCA+AGG | + | chr6.3:74259548-74259567 | MS.gene05296:intron | 30.0% |
| !!! | GAAGTGTTTTTTCAATGCTT+TGG | + | chr6.3:74259158-74259177 | MS.gene05296:intron | 30.0% |
| !!! | TTTTTTCCTGCAAATGTAAG+TGG | + | chr6.3:74259673-74259692 | MS.gene05296:intron | 30.0% |
| AAGCTATGCTAGAGAGTTTA+TGG | - | chr6.3:74258980-74258999 | None:intergenic | 35.0% | |
| AATGCATCAGGACAGTTAAA+AGG | - | chr6.3:74258419-74258438 | None:intergenic | 35.0% | |
| AATTACCCACTTACATTTGC+AGG | - | chr6.3:74259682-74259701 | None:intergenic | 35.0% | |
| ACAAAAAGTGGAGAACTTGT+TGG | + | chr6.3:74258446-74258465 | MS.gene05296:CDS | 35.0% | |
| ACCAAATCACAACTCTCATT+TGG | - | chr6.3:74258368-74258387 | None:intergenic | 35.0% | |
| AGAAGAGAATGTAGAGGAAA+AGG | - | chr6.3:74257947-74257966 | None:intergenic | 35.0% | |
| AGGAAAAGGGTGATTAGATA+TGG | - | chr6.3:74257933-74257952 | None:intergenic | 35.0% | |
| ATCATCATTTGACATGCCTT+TGG | + | chr6.3:74258268-74258287 | MS.gene05296:CDS | 35.0% | |
| ATGACATTAAAGTGTACCAG+TGG | - | chr6.3:74259202-74259221 | None:intergenic | 35.0% | |
| ATGTCACTATCTTGGTACAA+CGG | + | chr6.3:74259274-74259293 | MS.gene05296:intron | 35.0% | |
| ATTCAAGCAAAGAAGAAGAC+AGG | + | chr6.3:74260034-74260053 | MS.gene05296:CDS | 35.0% | |
| CAACAAAGATTGTGAGCTAA+TGG | + | chr6.3:74260071-74260090 | MS.gene05296:CDS | 35.0% | |
| CTCTCAAATGAACTCTTCAA+TGG | + | chr6.3:74258092-74258111 | MS.gene05296:CDS | 35.0% | |
| GAAGAACATCCAAATTGACT+AGG | - | chr6.3:74259537-74259556 | None:intergenic | 35.0% | |
| GAAGAGAATGTAGAGGAAAA+GGG | - | chr6.3:74257946-74257965 | None:intergenic | 35.0% | |
| GAAGGGATTGTTAATGTTGT+TGG | - | chr6.3:74258032-74258051 | None:intergenic | 35.0% | |
| GATGAAGATTGGGTTATGTT+TGG | + | chr6.3:74258694-74258713 | MS.gene05296:intron | 35.0% | |
| GCATGTAGTTCATCAAAACA+TGG | + | chr6.3:74258125-74258144 | MS.gene05296:CDS | 35.0% | |
| GTGCTTGAATAGTCTCTATT+TGG | + | chr6.3:74258556-74258575 | MS.gene05296:CDS | 35.0% | |
| TAGCTTAGTTGATCGCTTAT+AGG | - | chr6.3:74259103-74259122 | None:intergenic | 35.0% | |
| TCATGCACTCTAAATAGTGA+TGG | + | chr6.3:74260195-74260214 | MS.gene05296:CDS | 35.0% | |
| TGCTTGAGTAGGAAGAAAAA+TGG | + | chr6.3:74258500-74258519 | MS.gene05296:CDS | 35.0% | |
| TGGTACAACGGAATAACTTT+AGG | + | chr6.3:74259286-74259305 | MS.gene05296:intron | 35.0% | |
| TGTTGGGAAAATGGGATTAA+GGG | - | chr6.3:74258015-74258034 | None:intergenic | 35.0% | |
| TTGTTGGGAAAATGGGATTA+AGG | - | chr6.3:74258016-74258035 | None:intergenic | 35.0% | |
| ! | AAGAAAGAGACAAAGTTGGT+TGG | - | chr6.3:74260278-74260297 | None:intergenic | 35.0% |
| ! | AGTTAAATGGTTGATGTACG+TGG | + | chr6.3:74258790-74258809 | MS.gene05296:intron | 35.0% |
| ! | CTATTTAGAGTGCATGATTG+TGG | - | chr6.3:74260192-74260211 | None:intergenic | 35.0% |
| ! | GAAGGTGTGTATTAAGAAGA+AGG | - | chr6.3:74259752-74259771 | None:intergenic | 35.0% |
| !! | GCTTTGTTGTTGAACAAAGA+TGG | + | chr6.3:74260159-74260178 | MS.gene05296:CDS | 35.0% |
| AAGGGAAGAAGAGAATGTAG+AGG | - | chr6.3:74257953-74257972 | None:intergenic | 40.0% | |
| ACGATGATGAATGGTTTCCA+AGG | - | chr6.3:74258229-74258248 | None:intergenic | 40.0% | |
| AGAAACATGTGTGGATGGTT+TGG | + | chr6.3:74258304-74258323 | MS.gene05296:CDS | 40.0% | |
| AGATGACTCAGAAACATGTG+TGG | + | chr6.3:74258295-74258314 | MS.gene05296:CDS | 40.0% | |
| AGGGTGATTAGATATGGAAG+TGG | - | chr6.3:74257927-74257946 | None:intergenic | 40.0% | |
| CACATGCAATGTCACTATCT+TGG | + | chr6.3:74259266-74259285 | MS.gene05296:intron | 40.0% | |
| CGATGATGAATGGTTTCCAA+GGG | - | chr6.3:74258228-74258247 | None:intergenic | 40.0% | |
| GCCAAATGAGAGTTGTGATT+TGG | + | chr6.3:74258364-74258383 | MS.gene05296:CDS | 40.0% | |
| TATAACCATGCTGCAAGAAC+CGG | - | chr6.3:74258185-74258204 | None:intergenic | 40.0% | |
| TCAGATGAATCAACAGCTAG+AGG | - | chr6.3:74260225-74260244 | None:intergenic | 40.0% | |
| TGGAGAAGAATTGCTTGAGT+AGG | + | chr6.3:74258489-74258508 | MS.gene05296:CDS | 40.0% | |
| TTCCGGAGTAAGTGTTTCAT+GGG | + | chr6.3:74258849-74258868 | MS.gene05296:intron | 40.0% | |
| ! | AATGGATTTCAAGGTCTTGG+AGG | + | chr6.3:74258524-74258543 | MS.gene05296:CDS | 40.0% |
| ! | ACACATGTTTCTGAGTCATC+TGG | - | chr6.3:74258296-74258315 | None:intergenic | 40.0% |
| ! | AGACAAAGTTGGTTGGAGTT+TGG | - | chr6.3:74260271-74260290 | None:intergenic | 40.0% |
| ! | ATGTGTGGATGGTTTGGAAA+AGG | + | chr6.3:74258310-74258329 | MS.gene05296:CDS | 40.0% |
| !! | AGATGGAAGTGTTAGAAGGT+TGG | + | chr6.3:74258469-74258488 | MS.gene05296:CDS | 40.0% |
| !! | AGGGTTGATGATGTTGAGTT+AGG | - | chr6.3:74257996-74258015 | None:intergenic | 40.0% |
| !! | GAAAAGGCTTTGAAAGTGAG+AGG | + | chr6.3:74258326-74258345 | MS.gene05296:CDS | 40.0% |
| !! | GGTAATGGATTTCAAGGTCT+TGG | + | chr6.3:74258521-74258540 | MS.gene05296:CDS | 40.0% |
| !! | TTGGAGATGGAAGTGTTAGA+AGG | + | chr6.3:74258465-74258484 | MS.gene05296:CDS | 40.0% |
| AAGGTGTAGTCCGCTAATAC+GGG | - | chr6.3:74259785-74259804 | None:intergenic | 45.0% | |
| AGCCCATGAAACACTTACTC+CGG | - | chr6.3:74258854-74258873 | None:intergenic | 45.0% | |
| AGGATGAGTGAGACTCATGT+AGG | - | chr6.3:74257976-74257995 | None:intergenic | 45.0% | |
| ATGACGACGACGATGATGAA+TGG | - | chr6.3:74258238-74258257 | None:intergenic | 45.0% | |
| CATGGCTTCTGTCGAAGAAT+CGG | + | chr6.3:74260100-74260119 | MS.gene05296:CDS | 45.0% | |
| CTGTGTAGTTCATAGACCAC+TGG | + | chr6.3:74259183-74259202 | MS.gene05296:intron | 45.0% | |
| GACTCAGAAACATGTGTGGA+TGG | + | chr6.3:74258299-74258318 | MS.gene05296:CDS | 45.0% | |
| GAGTGAGACTCATGTAGGAA+GGG | - | chr6.3:74257971-74257990 | None:intergenic | 45.0% | |
| GTGACAAAATGTGTGTCCGA+AGG | - | chr6.3:74259804-74259823 | None:intergenic | 45.0% | |
| GTTCCGGAGTAAGTGTTTCA+TGG | + | chr6.3:74258848-74258867 | MS.gene05296:intron | 45.0% | |
| TCGGACGGCATATATTCACA+CGG | + | chr6.3:74260119-74260138 | MS.gene05296:CDS | 45.0% | |
| TCTGAGTCATCTGGTACCAA+AGG | - | chr6.3:74258287-74258306 | None:intergenic | 45.0% | |
| TGAGTGAGACTCATGTAGGA+AGG | - | chr6.3:74257972-74257991 | None:intergenic | 45.0% | |
| ! | GAAGGTGTAGTCCGCTAATA+CGG | - | chr6.3:74259786-74259805 | None:intergenic | 45.0% |
| !! | AGTGGAGAACTTGTTGGAGA+TGG | + | chr6.3:74258452-74258471 | MS.gene05296:CDS | 45.0% |
| !! | GTATTAGCGGACTACACCTT+CGG | + | chr6.3:74259785-74259804 | MS.gene05296:intron | 45.0% |
| !! | GTGAGCTAATGGGTTTGACA+TGG | + | chr6.3:74260082-74260101 | MS.gene05296:CDS | 45.0% |
| GCTTCTGTCGAAGAATCGGA+CGG | + | chr6.3:74260104-74260123 | MS.gene05296:CDS | 50.0% | |
| GTAGTCCGCTAATACGGGTT+GGG | - | chr6.3:74259780-74259799 | None:intergenic | 50.0% | |
| GTTGTCCCAACCCGTATTAG+CGG | + | chr6.3:74259772-74259791 | MS.gene05296:intron | 50.0% | |
| TGAATGGTTTCCAAGGGCAG+TGG | - | chr6.3:74258222-74258241 | None:intergenic | 50.0% | |
| TGTAGTCCGCTAATACGGGT+TGG | - | chr6.3:74259781-74259800 | None:intergenic | 50.0% | |
| !! | AATACGGGTTGGGACAACGA+AGG | - | chr6.3:74259770-74259789 | None:intergenic | 50.0% |
| ATGGTTTCCAAGGGCAGTGG+AGG | - | chr6.3:74258219-74258238 | None:intergenic | 55.0% | |
| CTGCAAGAACCGGACAGCAT+CGG | - | chr6.3:74258175-74258194 | None:intergenic | 55.0% | |
| TCATACTCCTCCACTGCCCT+TGG | + | chr6.3:74258209-74258228 | MS.gene05296:CDS | 55.0% | |
| GCTGTCCGGTTCTTGCAGCA+TGG | + | chr6.3:74258177-74258196 | MS.gene05296:CDS | 60.0% | |
| !! | GAACCGGACAGCATCGGCTA+CGG | - | chr6.3:74258169-74258188 | None:intergenic | 60.0% |
| CGACCGTAGCCGATGCTGTC+CGG | + | chr6.3:74258163-74258182 | MS.gene05296:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 74257909 | 74260353 | 74257909 | ID=MS.gene05296 |
| chr6.3 | mRNA | 74257909 | 74260353 | 74257909 | ID=MS.gene05296.t1;Parent=MS.gene05296 |
| chr6.3 | exon | 74257909 | 74258577 | 74257909 | ID=MS.gene05296.t1.exon1;Parent=MS.gene05296.t1 |
| chr6.3 | CDS | 74257909 | 74258577 | 74257909 | ID=cds.MS.gene05296.t1;Parent=MS.gene05296.t1 |
| chr6.3 | exon | 74260015 | 74260353 | 74260015 | ID=MS.gene05296.t1.exon2;Parent=MS.gene05296.t1 |
| chr6.3 | CDS | 74260015 | 74260353 | 74260015 | ID=cds.MS.gene05296.t1;Parent=MS.gene05296.t1 |
| Gene Sequence |
| Protein sequence |
