Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81997.t1 | PNY17342.1 | 85.7 | 217 | 31 | 0 | 1 | 217 | 78 | 294 | 7.40E-108 | 401 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81997.t1 | Q9LSS3 | 53.9 | 219 | 93 | 3 | 1 | 217 | 19 | 231 | 7.1e-59 | 229.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81997.t1 | A0A2K3PPX2 | 85.7 | 217 | 31 | 0 | 1 | 217 | 78 | 294 | 5.3e-108 | 401.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene81997 | 0.805094 | 1.58E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene81997 | 0.816639 | 4.98E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene81997 | 0.824695 | 7.02E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene81997 | 0.818275 | 2.13E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene81997 | 0.804072 | 2.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81997.t1 | MTR_7g092500 | 86.758 | 219 | 27 | 1 | 1 | 217 | 25 | 243 | 1.46e-137 | 395 |
| MS.gene81997.t1 | MTR_7g092500 | 85.567 | 194 | 25 | 2 | 257 | 447 | 53 | 246 | 3.75e-115 | 338 |
| MS.gene81997.t1 | MTR_0262s0030 | 89.375 | 160 | 17 | 0 | 1 | 160 | 25 | 184 | 1.52e-102 | 303 |
| MS.gene81997.t1 | MTR_0262s0030 | 92.481 | 133 | 9 | 1 | 257 | 388 | 53 | 185 | 1.16e-82 | 253 |
| MS.gene81997.t1 | MTR_5g031400 | 57.343 | 143 | 25 | 2 | 75 | 217 | 48 | 154 | 1.50e-44 | 153 |
| MS.gene81997.t1 | MTR_5g031400 | 56.849 | 146 | 26 | 3 | 303 | 447 | 48 | 157 | 1.42e-40 | 142 |
| MS.gene81997.t1 | MTR_4g119190 | 68.750 | 48 | 15 | 0 | 55 | 102 | 19 | 66 | 1.35e-14 | 68.6 |
| MS.gene81997.t1 | MTR_4g119190 | 70.833 | 48 | 13 | 1 | 283 | 329 | 19 | 66 | 3.01e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81997.t1 | AT5G60230 | 53.881 | 219 | 93 | 3 | 1 | 217 | 24 | 236 | 1.80e-70 | 224 |
| MS.gene81997.t1 | AT5G60230 | 56.842 | 190 | 75 | 2 | 257 | 444 | 52 | 236 | 2.61e-64 | 208 |
| MS.gene81997.t1 | AT5G60230 | 53.881 | 219 | 93 | 3 | 1 | 217 | 19 | 231 | 2.01e-70 | 223 |
| MS.gene81997.t1 | AT5G60230 | 54.774 | 199 | 83 | 2 | 248 | 444 | 38 | 231 | 2.77e-64 | 207 |
| MS.gene81997.t1 | AT3G45590 | 52.232 | 224 | 98 | 4 | 1 | 221 | 19 | 236 | 3.38e-70 | 223 |
| MS.gene81997.t1 | AT3G45590 | 51.724 | 203 | 92 | 2 | 244 | 444 | 34 | 232 | 1.66e-60 | 197 |
| MS.gene81997.t1 | AT3G45590 | 52.232 | 224 | 98 | 4 | 1 | 221 | 19 | 236 | 3.38e-70 | 223 |
| MS.gene81997.t1 | AT3G45590 | 51.724 | 203 | 92 | 2 | 244 | 444 | 34 | 232 | 1.66e-60 | 197 |
| MS.gene81997.t1 | AT3G45577 | 48.193 | 83 | 43 | 0 | 260 | 342 | 36 | 118 | 3.57e-17 | 77.8 |
| MS.gene81997.t1 | AT3G45577 | 47.423 | 97 | 47 | 2 | 19 | 115 | 26 | 118 | 4.99e-17 | 77.4 |
Find 85 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAACTCTTCATCATTTA+AGG | 0.063723 | 7.4:+36276520 | None:intergenic |
| ACGCCACAACTCTTCATTTA+AGG | 0.137177 | 7.4:+36274576 | None:intergenic |
| TTGAAATGCCTCAAGATTAA+TGG | 0.229021 | 7.4:-36276560 | MS.gene81997:CDS |
| ACAAGGGAATGTTTCTTTCT+TGG | 0.237646 | 7.4:+36276484 | None:intergenic |
| GTTAACGTACAAACCTAATA+AGG | 0.279589 | 7.4:+36276238 | None:intergenic |
| CATTGCACAACTCGACTTCT+TGG | 0.283326 | 7.4:-36276275 | MS.gene81997:CDS |
| CTTTGCACAACTCGACTTCT+TGG | 0.291537 | 7.4:-36274334 | MS.gene81997:CDS |
| GAATAAGCCTTGTAGAAATA+AGG | 0.297148 | 7.4:+36274526 | None:intergenic |
| GCTCGGGTGCATTCTGAGTA+TGG | 0.321264 | 7.4:-36274424 | MS.gene81997:CDS |
| GCTCGGGTGCATTCTGAGTA+TGG | 0.321264 | 7.4:-36276365 | MS.gene81997:CDS |
| ATAAGGGAATGCTTCTTTCT+TGG | 0.327789 | 7.4:+36274543 | None:intergenic |
| CGCCACAACTCTTCATTTAA+GGG | 0.336160 | 7.4:+36274577 | None:intergenic |
| TAAGGGAATGCTTCTTTCTT+GGG | 0.350469 | 7.4:+36274544 | None:intergenic |
| TAAATAGAAGATTGAGAGTA+TGG | 0.364355 | 7.4:-36274366 | MS.gene81997:CDS |
| CACAACTCTTCATCATTTAA+GGG | 0.377780 | 7.4:+36276521 | None:intergenic |
| GATCTCTCACGACATTGTTC+TGG | 0.391643 | 7.4:+36276137 | None:intergenic |
| ATTAATCTTGAGGCATTTCA+AGG | 0.418645 | 7.4:+36276562 | None:intergenic |
| GTGAAGTCAGGGGCTCAGTA+TGG | 0.424296 | 7.4:-36276419 | MS.gene81997:CDS |
| AATAAGCCTTGTAGAAATAA+GGG | 0.428978 | 7.4:+36274527 | None:intergenic |
| TTGCTTAATAAAGCGTGCTT+TGG | 0.429218 | 7.4:-36274718 | MS.gene81997:CDS |
| GTGAGGTCAGGGTCTCAGTA+TGG | 0.430753 | 7.4:-36274478 | MS.gene81997:CDS |
| ATTAATGACGGTGCTGATAC+TGG | 0.437232 | 7.4:-36274601 | MS.gene81997:CDS |
| ACATCCATCTCTCACATTCC+CGG | 0.443650 | 7.4:-36275894 | MS.gene81997:intron |
| GTTAACGTACAAAACTAGTA+AGG | 0.444033 | 7.4:+36274297 | None:intergenic |
| AAAGACTGGGTAGTGAAGTC+AGG | 0.444328 | 7.4:-36276431 | MS.gene81997:CDS |
| TTGCTTGATAAAGCATGCTT+TGG | 0.455248 | 7.4:-36276662 | MS.gene81997:CDS |
| AAGTACGCACAATCTCTAGA+TGG | 0.473667 | 7.4:-36276163 | MS.gene81997:CDS |
| CCATTGCTCTAGACTCCGTC+TGG | 0.479107 | 7.4:+36274207 | None:intergenic |
| AACATTCCCTTGTTTCTACA+AGG | 0.481450 | 7.4:-36276474 | MS.gene81997:CDS |
| TATTGTTTATCGCCATCATC+CGG | 0.483793 | 7.4:-36274446 | MS.gene81997:CDS |
| TATTGTTTATCGCCATCATC+CGG | 0.483793 | 7.4:-36276387 | MS.gene81997:CDS |
| CATCTTCAACAGGGGAGAGC+GGG | 0.487039 | 7.4:-36276007 | MS.gene81997:intron |
| GCTACTTTGCTTAGTGGCGG+CGG | 0.487147 | 7.4:-36275954 | MS.gene81997:CDS |
| TAGATGGAAGATTGAGAGAA+TGG | 0.490141 | 7.4:-36276307 | MS.gene81997:CDS |
| AATGCACCCGAGCCGGATGA+TGG | 0.494307 | 7.4:+36274434 | None:intergenic |
| AATGCACCCGAGCCGGATGA+TGG | 0.494307 | 7.4:+36276375 | None:intergenic |
| GACAATGATGGTGATCTAGA+TGG | 0.497076 | 7.4:-36276323 | MS.gene81997:CDS |
| TAGTTGACAAGGATATGTAT+TGG | 0.499569 | 7.4:-36274681 | MS.gene81997:CDS |
| TAGTTGACAAGGATATGTAT+TGG | 0.499569 | 7.4:-36276625 | MS.gene81997:CDS |
| AGCATTCCCTTATTTCTACA+AGG | 0.509569 | 7.4:-36274533 | MS.gene81997:CDS |
| GGCGGAGATAGAACTATCAT+TGG | 0.511446 | 7.4:-36275936 | MS.gene81997:CDS |
| CAACAGGGGAGAGCGGGAAA+AGG | 0.513805 | 7.4:-36276001 | MS.gene81997:intron |
| GGAGATTGTGCGTTCTTCGA+TGG | 0.514064 | 7.4:+36274228 | None:intergenic |
| CAATAAGCCTTGTAGAAACA+AGG | 0.516266 | 7.4:+36276467 | None:intergenic |
| TTATCGCCATCATCCGGCTC+GGG | 0.524109 | 7.4:-36274440 | MS.gene81997:CDS |
| TTATCGCCATCATCCGGCTC+GGG | 0.524109 | 7.4:-36276381 | MS.gene81997:CDS |
| TACTCAGAATGCACCCGAGC+CGG | 0.524568 | 7.4:+36274427 | None:intergenic |
| TACTCAGAATGCACCCGAGC+CGG | 0.524568 | 7.4:+36276368 | None:intergenic |
| TTTATCGCCATCATCCGGCT+CGG | 0.534738 | 7.4:-36274441 | MS.gene81997:CDS |
| TTTATCGCCATCATCCGGCT+CGG | 0.534738 | 7.4:-36276382 | MS.gene81997:CDS |
| TGTGATACAATCTTTGACAT+GGG | 0.538484 | 7.4:+36276773 | None:intergenic |
| GTATAGTTTGTCAAACATAA+CGG | 0.545435 | 7.4:+36276191 | None:intergenic |
| GGCATTTCAAGGAATAACAT+AGG | 0.552981 | 7.4:+36276573 | None:intergenic |
| TTGTGATACAATCTTTGACA+TGG | 0.553740 | 7.4:+36276772 | None:intergenic |
| TTAGTTCAATCAAATACTTG+TGG | 0.557545 | 7.4:-36276737 | MS.gene81997:CDS |
| TAGATAGAATGCTTCCTCCA+TGG | 0.562337 | 7.4:+36274648 | None:intergenic |
| TCCTTGTCAACTATCCTCAC+AGG | 0.567073 | 7.4:+36274691 | None:intergenic |
| TCCTTGTCAACTATCCTCAC+AGG | 0.567073 | 7.4:+36276635 | None:intergenic |
| CAGCACCGTCATTAATCTTG+AGG | 0.574856 | 7.4:+36274608 | None:intergenic |
| AAGACTGGGTAGTGAAGTCA+GGG | 0.585343 | 7.4:-36276430 | MS.gene81997:CDS |
| TAGGTAGAATGCTTCCTCCT+CGG | 0.589972 | 7.4:+36276592 | None:intergenic |
| GTATTGGTTTCAATTAACCA+TGG | 0.594762 | 7.4:-36274665 | MS.gene81997:CDS |
| AAAACTGGGTAGTGAGGTCA+GGG | 0.603360 | 7.4:-36274489 | MS.gene81997:CDS |
| GAGCACCTCCATTAATCTTG+AGG | 0.609670 | 7.4:+36276552 | None:intergenic |
| GCATCTTCAACAGGGGAGAG+CGG | 0.616909 | 7.4:-36276008 | MS.gene81997:intron |
| GTTCTATCACATGACAATGA+TGG | 0.620867 | 7.4:-36274394 | MS.gene81997:CDS |
| GTTCTATCACATGACAATGA+TGG | 0.620867 | 7.4:-36276335 | MS.gene81997:CDS |
| ACCTGTGAGGATAGTTGACA+AGG | 0.621958 | 7.4:-36276636 | MS.gene81997:CDS |
| GGGAAAAGGAAAGAAGCTAA+AGG | 0.622115 | 7.4:-36275987 | MS.gene81997:CDS |
| CCAGACGGAGTCTAGAGCAA+TGG | 0.624067 | 7.4:-36274207 | MS.gene81997:CDS |
| GGGGCTACTTTGCTTAGTGG+CGG | 0.630831 | 7.4:-36275957 | MS.gene81997:CDS |
| AAATGCCTCAAGATTAATGA+CGG | 0.637181 | 7.4:-36274613 | MS.gene81997:CDS |
| GTCCCTTAAATGAAGAGTTG+TGG | 0.637860 | 7.4:-36274579 | MS.gene81997:CDS |
| AATAAGCCTTGTAGAAACAA+GGG | 0.638392 | 7.4:+36276468 | None:intergenic |
| ACCTGTGAGGATAGTTGACA+AGG | 0.642072 | 7.4:-36274692 | MS.gene81997:CDS |
| TTGGTTTCAGTTAACCGAGG+AGG | 0.658202 | 7.4:-36276606 | MS.gene81997:CDS |
| CGTGCTTTGGTCGACCTGTG+AGG | 0.662108 | 7.4:-36274705 | MS.gene81997:CDS |
| TGTACCGGGAATGTGAGAGA+TGG | 0.664950 | 7.4:+36275890 | None:intergenic |
| AAATGCCTCAAGATTAATGG+AGG | 0.668756 | 7.4:-36276557 | MS.gene81997:CDS |
| CATGCTTTGGTCAACCTGTG+AGG | 0.682966 | 7.4:-36276649 | MS.gene81997:CDS |
| GTATTGGTTTCAGTTAACCG+AGG | 0.685014 | 7.4:-36276609 | MS.gene81997:CDS |
| TTGGTTTCAATTAACCATGG+AGG | 0.690068 | 7.4:-36274662 | MS.gene81997:CDS |
| CCTTAAATGATGAAGAGTTG+TGG | 0.708210 | 7.4:-36276520 | MS.gene81997:CDS |
| AAGAACGCACAATCTCCAGA+CGG | 0.725163 | 7.4:-36274222 | MS.gene81997:CDS |
| AGACTGGGTAGTGAAGTCAG+GGG | 0.803024 | 7.4:-36276429 | MS.gene81997:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACTTATATTTAATGAAA+CGG | + | chr7.4:36275602-36275621 | None:intergenic | 10.0% |
| !!! | TTATTTTCTTTGTTTTTTTA+AGG | - | chr7.4:36275555-36275574 | MS.gene81997:intron | 10.0% |
| !! | AGCCAAATAATATATTAATA+CGG | + | chr7.4:36275393-36275412 | None:intergenic | 15.0% |
| !! | ATATACCCTTAATATATAAA+GGG | + | chr7.4:36275855-36275874 | None:intergenic | 15.0% |
| !! | TACCGTATTAATATATTATT+TGG | - | chr7.4:36275388-36275407 | MS.gene81997:intron | 15.0% |
| !! | TATATACCCTTAATATATAA+AGG | + | chr7.4:36275856-36275875 | None:intergenic | 15.0% |
| !! | TTTATAAAAGTTGAGTTATA+CGG | + | chr7.4:36275519-36275538 | None:intergenic | 15.0% |
| !!! | ATTGTTTGACTTTTTTTATA+AGG | - | chr7.4:36276034-36276053 | MS.gene81997:intron | 15.0% |
| !! | AAAAGATGCAAAATCAAAAA+AGG | - | chr7.4:36276081-36276100 | MS.gene81997:intron | 20.0% |
| !! | ATACTTCTAATACAAATAGA+TGG | + | chr7.4:36275120-36275139 | None:intergenic | 20.0% |
| !! | TATCTCCCTTTATATATTAA+GGG | - | chr7.4:36275847-36275866 | MS.gene81997:intron | 20.0% |
| !! | TTATCTCCCTTTATATATTA+AGG | - | chr7.4:36275846-36275865 | MS.gene81997:intron | 20.0% |
| !!! | AAGTTTTTTTTTTCCTTTTG+GGG | + | chr7.4:36275340-36275359 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTATAAGGTCAAA+TGG | - | chr7.4:36276042-36276061 | MS.gene81997:intron | 20.0% |
| !!! | CAAGTTTTTTTTTTCCTTTT+GGG | + | chr7.4:36275341-36275360 | None:intergenic | 20.0% |
| !!! | TCAAGTTTTTTTTTTCCTTT+TGG | + | chr7.4:36275342-36275361 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCTTCTTTATGTT+TGG | - | chr7.4:36275682-36275701 | MS.gene81997:intron | 20.0% |
| ! | AAAGAAGCTAAAGGAAAAAA+GGG | - | chr7.4:36274981-36275000 | MS.gene81997:intron | 25.0% |
| ! | GAAGTCAAATTTATCCATAA+TGG | + | chr7.4:36275488-36275507 | None:intergenic | 25.0% |
| ! | GATTGAGCTTTACTAAATAA+AGG | - | chr7.4:36275994-36276013 | MS.gene81997:CDS | 25.0% |
| ! | TAAATAGAAGATTGAGAGTA+TGG | - | chr7.4:36276593-36276612 | MS.gene81997:CDS | 25.0% |
| ! | TTAATCATAAACATAGACAG+CGG | + | chr7.4:36275736-36275755 | None:intergenic | 25.0% |
| ! | TTAGTTCAATCAAATACTTG+TGG | - | chr7.4:36274222-36274241 | MS.gene81997:CDS | 25.0% |
| ! | TTTGAACCAACAAAATTGTT+TGG | + | chr7.4:36275419-36275438 | None:intergenic | 25.0% |
| !! | AATAAGCCTTGTAGAAATAA+GGG | + | chr7.4:36276435-36276454 | None:intergenic | 25.0% |
| !! | ATTTAGTTTAGTGTCCATTA+TGG | - | chr7.4:36275471-36275490 | MS.gene81997:intron | 25.0% |
| !! | GTATAGTTTGTCAAACATAA+CGG | + | chr7.4:36274771-36274790 | None:intergenic | 25.0% |
| !! | GTTTCGTTTCTTTCAAATTT+TGG | - | chr7.4:36275820-36275839 | MS.gene81997:intron | 25.0% |
| !! | GTTTTGTACGTTAACAAAAA+TGG | - | chr7.4:36276670-36276689 | MS.gene81997:CDS | 25.0% |
| !!! | GCACAATTTTTTTGTCAATA+CGG | + | chr7.4:36274847-36274866 | None:intergenic | 25.0% |
| AAATGCCTCAAGATTAATGA+CGG | - | chr7.4:36276346-36276365 | MS.gene81997:CDS | 30.0% | |
| AAGAAGCTAAAGGAAAAAAG+GGG | - | chr7.4:36274982-36275001 | MS.gene81997:intron | 30.0% | |
| AGAAAAAGAGAAGATTGTAC+CGG | + | chr7.4:36275087-36275106 | None:intergenic | 30.0% | |
| AGGTCAAATTATGAAGAGTA+TGG | + | chr7.4:36275218-36275237 | None:intergenic | 30.0% | |
| AGTGTTGCAAAAACCTTATT+AGG | - | chr7.4:36274708-36274727 | MS.gene81997:CDS | 30.0% | |
| ATTCAATTGTTTCGCTCTTA+TGG | - | chr7.4:36275756-36275775 | MS.gene81997:intron | 30.0% | |
| CACAACTCTTCATCATTTAA+GGG | + | chr7.4:36274441-36274460 | None:intergenic | 30.0% | |
| CCAAATTAATCAAGACACAA+AGG | + | chr7.4:36275947-36275966 | None:intergenic | 30.0% | |
| CCTTTGTGTCTTGATTAATT+TGG | - | chr7.4:36275944-36275963 | MS.gene81997:CDS | 30.0% | |
| GAAAGAAGCTAAAGGAAAAA+AGG | - | chr7.4:36274980-36274999 | MS.gene81997:intron | 30.0% | |
| GGTTTGTACGTTAACAAAAA+TGG | - | chr7.4:36274729-36274748 | MS.gene81997:CDS | 30.0% | |
| GTTAACGTACAAAACTAGTA+AGG | + | chr7.4:36276665-36276684 | None:intergenic | 30.0% | |
| GTTAACGTACAAACCTAATA+AGG | + | chr7.4:36274724-36274743 | None:intergenic | 30.0% | |
| TAGTTGACAAGGATATGTAT+TGG | - | chr7.4:36274334-36274353 | MS.gene81997:CDS | 30.0% | |
| TGAGCTTTACTAAATAAAGG+TGG | - | chr7.4:36275997-36276016 | MS.gene81997:CDS | 30.0% | |
| TGTGATACAATCTTTGACAT+GGG | + | chr7.4:36274189-36274208 | None:intergenic | 30.0% | |
| TTGAAATGCCTCAAGATTAA+TGG | - | chr7.4:36274399-36274418 | MS.gene81997:CDS | 30.0% | |
| TTGTGATACAATCTTTGACA+TGG | + | chr7.4:36274190-36274209 | None:intergenic | 30.0% | |
| ! | AAGCTATCACAATTTTTACG+AGG | + | chr7.4:36275711-36275730 | None:intergenic | 30.0% |
| ! | AATAAGCCTTGTAGAAACAA+GGG | + | chr7.4:36274494-36274513 | None:intergenic | 30.0% |
| ! | AGCTATCACAATTTTTACGA+GGG | + | chr7.4:36275710-36275729 | None:intergenic | 30.0% |
| ! | ATTAATCTTGAGGCATTTCA+AGG | + | chr7.4:36274400-36274419 | None:intergenic | 30.0% |
| ! | CACATAAGAATTACGGATTA+GGG | + | chr7.4:36275923-36275942 | None:intergenic | 30.0% |
| ! | GAATAAGCCTTGTAGAAATA+AGG | + | chr7.4:36276436-36276455 | None:intergenic | 30.0% |
| ! | TCATTTTCGAATGAAAGACT+GGG | - | chr7.4:36274515-36274534 | MS.gene81997:CDS | 30.0% |
| ! | TTACTAAATAAAGGTGGACT+TGG | - | chr7.4:36276003-36276022 | MS.gene81997:intron | 30.0% |
| !! | CTCATTTTTGTCTATGTTCA+GGG | - | chr7.4:36275278-36275297 | MS.gene81997:intron | 30.0% |
| !! | GTATTGGTTTCAATTAACCA+TGG | - | chr7.4:36276294-36276313 | MS.gene81997:CDS | 30.0% |
| !! | TCATTTTTGTCTATGTTCAG+GGG | - | chr7.4:36275279-36275298 | MS.gene81997:intron | 30.0% |
| !! | TCTCATTTTTGTCTATGTTC+AGG | - | chr7.4:36275277-36275296 | MS.gene81997:intron | 30.0% |
| AAATGCCTCAAGATTAATGG+AGG | - | chr7.4:36274402-36274421 | MS.gene81997:CDS | 35.0% | |
| AATGTCTCTAATCAGTGATC+AGG | + | chr7.4:36275238-36275257 | None:intergenic | 35.0% | |
| ACAAGGGAATGTTTCTTTCT+TGG | + | chr7.4:36274478-36274497 | None:intergenic | 35.0% | |
| AGAAGCTAAAGGAAAAAAGG+GGG | - | chr7.4:36274983-36275002 | MS.gene81997:intron | 35.0% | |
| ATAAGGGAATGCTTCTTTCT+TGG | + | chr7.4:36276419-36276438 | None:intergenic | 35.0% | |
| ATCAAACACTTTACGTGCAA+AGG | + | chr7.4:36275148-36275167 | None:intergenic | 35.0% | |
| CAAAGGCCACATAAGAATTA+CGG | + | chr7.4:36275930-36275949 | None:intergenic | 35.0% | |
| CCACAACTCTTCATCATTTA+AGG | + | chr7.4:36274442-36274461 | None:intergenic | 35.0% | |
| CCACATAAGAATTACGGATT+AGG | + | chr7.4:36275924-36275943 | None:intergenic | 35.0% | |
| CCTAATCCGTAATTCTTATG+TGG | - | chr7.4:36275921-36275940 | MS.gene81997:CDS | 35.0% | |
| CCTTAAATGATGAAGAGTTG+TGG | - | chr7.4:36274439-36274458 | MS.gene81997:CDS | 35.0% | |
| GAAAAAGAGAAGATTGTACC+GGG | + | chr7.4:36275086-36275105 | None:intergenic | 35.0% | |
| GAAACGAAACAGAGAAAAGT+TGG | + | chr7.4:36275810-36275829 | None:intergenic | 35.0% | |
| GCAGAGGTTTCACAAATTTA+GGG | + | chr7.4:36274908-36274927 | None:intergenic | 35.0% | |
| GGCATTTCAAGGAATAACAT+AGG | + | chr7.4:36274389-36274408 | None:intergenic | 35.0% | |
| GTTCTATCACATGACAATGA+TGG | - | chr7.4:36274624-36274643 | MS.gene81997:CDS | 35.0% | |
| TAAGGGAATGCTTCTTTCTT+GGG | + | chr7.4:36276418-36276437 | None:intergenic | 35.0% | |
| TAGATGGAAGATTGAGAGAA+TGG | - | chr7.4:36274652-36274671 | MS.gene81997:CDS | 35.0% | |
| TATTGTTTATCGCCATCATC+CGG | - | chr7.4:36274572-36274591 | MS.gene81997:CDS | 35.0% | |
| TCACCTTCGAATGAAAAACT+GGG | - | chr7.4:36276456-36276475 | MS.gene81997:CDS | 35.0% | |
| TTGCTTAATAAAGCGTGCTT+TGG | - | chr7.4:36276241-36276260 | MS.gene81997:CDS | 35.0% | |
| TTGCTTGATAAAGCATGCTT+TGG | - | chr7.4:36274297-36274316 | MS.gene81997:CDS | 35.0% | |
| TTGGTTTCAATTAACCATGG+AGG | - | chr7.4:36276297-36276316 | MS.gene81997:CDS | 35.0% | |
| ! | AACAGAGAAAAGTTGGTTGA+TGG | + | chr7.4:36275803-36275822 | None:intergenic | 35.0% |
| ! | CAATAAGCCTTGTAGAAACA+AGG | + | chr7.4:36274495-36274514 | None:intergenic | 35.0% |
| ! | CTATCACAATTTTTACGAGG+GGG | + | chr7.4:36275708-36275727 | None:intergenic | 35.0% |
| ! | GCTACTCCAAACAATTTTGT+TGG | - | chr7.4:36275410-36275429 | MS.gene81997:intron | 35.0% |
| ! | GCTATCACAATTTTTACGAG+GGG | + | chr7.4:36275709-36275728 | None:intergenic | 35.0% |
| !! | AACATTCCCTTGTTTCTACA+AGG | - | chr7.4:36274485-36274504 | MS.gene81997:CDS | 35.0% |
| !! | AGCATTCCCTTATTTCTACA+AGG | - | chr7.4:36276426-36276445 | MS.gene81997:CDS | 35.0% |
| !! | GTCATTTTCGAATGAAAGAC+TGG | - | chr7.4:36274514-36274533 | MS.gene81997:CDS | 35.0% |
| AAGTACGCACAATCTCTAGA+TGG | - | chr7.4:36274796-36274815 | MS.gene81997:intron | 40.0% | |
| ACAAATTTAGGGAAACGCCT+GGG | + | chr7.4:36274897-36274916 | None:intergenic | 40.0% | |
| ACGCCACAACTCTTCATTTA+AGG | + | chr7.4:36276386-36276405 | None:intergenic | 40.0% | |
| AGCTCAATCAAAATAGCCAC+AGG | + | chr7.4:36275983-36276002 | None:intergenic | 40.0% | |
| CGAATGGTTGTATAGTCATG+GGG | - | chr7.4:36275302-36275321 | MS.gene81997:intron | 40.0% | |
| CGCCACAACTCTTCATTTAA+GGG | + | chr7.4:36276385-36276404 | None:intergenic | 40.0% | |
| CTCACCTTCGAATGAAAAAC+TGG | - | chr7.4:36276455-36276474 | MS.gene81997:CDS | 40.0% | |
| CTCGTGTTGAAAAAAGCTTG+AGG | + | chr7.4:36275896-36275915 | None:intergenic | 40.0% | |
| GAATGAAAAACTGGGTAGTG+AGG | - | chr7.4:36276464-36276483 | MS.gene81997:CDS | 40.0% | |
| GCGAATGGTTGTATAGTCAT+GGG | - | chr7.4:36275301-36275320 | MS.gene81997:intron | 40.0% | |
| GGCAGAGGTTTCACAAATTT+AGG | + | chr7.4:36274909-36274928 | None:intergenic | 40.0% | |
| GGGAAAAGGAAAGAAGCTAA+AGG | - | chr7.4:36274972-36274991 | MS.gene81997:intron | 40.0% | |
| GTCCCTTAAATGAAGAGTTG+TGG | - | chr7.4:36276380-36276399 | MS.gene81997:CDS | 40.0% | |
| TAGATAGAATGCTTCCTCCA+TGG | + | chr7.4:36276314-36276333 | None:intergenic | 40.0% | |
| ! | CTACCCAGTTTTTCATTCGA+AGG | + | chr7.4:36276462-36276481 | None:intergenic | 40.0% |
| ! | GACAATGATGGTGATCTAGA+TGG | - | chr7.4:36274636-36274655 | MS.gene81997:CDS | 40.0% |
| ! | GCATCTTTTCCTTTCCATCT+TGG | + | chr7.4:36276070-36276089 | None:intergenic | 40.0% |
| ! | TTGATGGTTGACACTGAAAC+TGG | + | chr7.4:36275787-36275806 | None:intergenic | 40.0% |
| !! | ATTAATGACGGTGCTGATAC+TGG | - | chr7.4:36276358-36276377 | MS.gene81997:CDS | 40.0% |
| !! | GTATTGGTTTCAGTTAACCG+AGG | - | chr7.4:36274350-36274369 | MS.gene81997:CDS | 40.0% |
| !! | TGGATCATTTTAGTAGCCTG+TGG | - | chr7.4:36275964-36275983 | MS.gene81997:CDS | 40.0% |
| !!! | CAAGCTTTTTTCAACACGAG+AGG | - | chr7.4:36275896-36275915 | MS.gene81997:CDS | 40.0% |
| AAAAACTGGGTAGTGAGGTC+AGG | - | chr7.4:36276469-36276488 | MS.gene81997:CDS | 45.0% | |
| AAAACTGGGTAGTGAGGTCA+GGG | - | chr7.4:36276470-36276489 | MS.gene81997:CDS | 45.0% | |
| AAAGACTGGGTAGTGAAGTC+AGG | - | chr7.4:36274528-36274547 | MS.gene81997:CDS | 45.0% | |
| AAGAACGCACAATCTCCAGA+CGG | - | chr7.4:36276737-36276756 | MS.gene81997:CDS | 45.0% | |
| AAGACTGGGTAGTGAAGTCA+GGG | - | chr7.4:36274529-36274548 | MS.gene81997:CDS | 45.0% | |
| AAGGTCAAATGGCACCAAGA+TGG | - | chr7.4:36276053-36276072 | MS.gene81997:intron | 45.0% | |
| ACATCCATCTCTCACATTCC+CGG | - | chr7.4:36275065-36275084 | MS.gene81997:intron | 45.0% | |
| ACCTGTGAGGATAGTTGACA+AGG | - | chr7.4:36274323-36274342 | MS.gene81997:CDS | 45.0% | |
| CAAATGGCACCAAGATGGAA+AGG | - | chr7.4:36276058-36276077 | MS.gene81997:intron | 45.0% | |
| CACAAATTTAGGGAAACGCC+TGG | + | chr7.4:36274898-36274917 | None:intergenic | 45.0% | |
| CAGCACCGTCATTAATCTTG+AGG | + | chr7.4:36276354-36276373 | None:intergenic | 45.0% | |
| CATTGCACAACTCGACTTCT+TGG | - | chr7.4:36274684-36274703 | MS.gene81997:CDS | 45.0% | |
| CTCAGTGATATTGTGAGTCC+AGG | - | chr7.4:36274867-36274886 | MS.gene81997:intron | 45.0% | |
| CTGGACTCACAATATCACTG+AGG | + | chr7.4:36274869-36274888 | None:intergenic | 45.0% | |
| CTTTGCACAACTCGACTTCT+TGG | - | chr7.4:36276625-36276644 | MS.gene81997:CDS | 45.0% | |
| GAGCACCTCCATTAATCTTG+AGG | + | chr7.4:36274410-36274429 | None:intergenic | 45.0% | |
| GATCTCTCACGACATTGTTC+TGG | + | chr7.4:36274825-36274844 | None:intergenic | 45.0% | |
| GGCGAATGGTTGTATAGTCA+TGG | - | chr7.4:36275300-36275319 | MS.gene81997:intron | 45.0% | |
| GGCGGAGATAGAACTATCAT+TGG | - | chr7.4:36275023-36275042 | MS.gene81997:intron | 45.0% | |
| GTATAGTCATGGGGTAGCAT+TGG | - | chr7.4:36275311-36275330 | MS.gene81997:intron | 45.0% | |
| TAGGTAGAATGCTTCCTCCT+CGG | + | chr7.4:36274370-36274389 | None:intergenic | 45.0% | |
| TCCTTGTCAACTATCCTCAC+AGG | + | chr7.4:36274327-36274346 | None:intergenic | 45.0% | |
| TTGGTTTCAGTTAACCGAGG+AGG | - | chr7.4:36274353-36274372 | MS.gene81997:CDS | 45.0% | |
| ! | TCCACCGGTTGTTGTGAAAA+CGG | + | chr7.4:36274930-36274949 | None:intergenic | 45.0% |
| !!! | TCTGCCGTTTTCACAACAAC+CGG | - | chr7.4:36274923-36274942 | MS.gene81997:intron | 45.0% |
| AATTTAGGGAAACGCCTGGG+CGG | + | chr7.4:36274894-36274913 | None:intergenic | 50.0% | |
| AGACTGGGTAGTGAAGTCAG+GGG | - | chr7.4:36274530-36274549 | MS.gene81997:CDS | 50.0% | |
| CATGCTTTGGTCAACCTGTG+AGG | - | chr7.4:36274310-36274329 | MS.gene81997:CDS | 50.0% | |
| CCTGTTGAAGATGCTTCCAC+CGG | + | chr7.4:36274945-36274964 | None:intergenic | 50.0% | |
| GGAGATTGTGCGTTCTTCGA+TGG | + | chr7.4:36276734-36276753 | None:intergenic | 50.0% | |
| GGTTGTTGTGAAAACGGCAG+AGG | + | chr7.4:36274924-36274943 | None:intergenic | 50.0% | |
| TGTACCGGGAATGTGAGAGA+TGG | + | chr7.4:36275072-36275091 | None:intergenic | 50.0% | |
| TGTCTATGTTCAGGGGCGAA+TGG | - | chr7.4:36275286-36275305 | MS.gene81997:intron | 50.0% | |
| TTTATCGCCATCATCCGGCT+CGG | - | chr7.4:36274577-36274596 | MS.gene81997:CDS | 50.0% | |
| ! | AAGGGGGCTACTTTGCTTAG+TGG | - | chr7.4:36274999-36275018 | MS.gene81997:intron | 50.0% |
| !! | CGGTGGAAGCATCTTCAACA+GGG | - | chr7.4:36274943-36274962 | MS.gene81997:intron | 50.0% |
| !! | GGTGGAAGCATCTTCAACAG+GGG | - | chr7.4:36274944-36274963 | MS.gene81997:intron | 50.0% |
| !! | GTAGCATTGGCTACCCCAAA+AGG | - | chr7.4:36275324-36275343 | MS.gene81997:intron | 50.0% |
| CATCTTCAACAGGGGAGAGC+GGG | - | chr7.4:36274952-36274971 | MS.gene81997:intron | 55.0% | |
| GCATCTTCAACAGGGGAGAG+CGG | - | chr7.4:36274951-36274970 | MS.gene81997:intron | 55.0% | |
| GCTCGGGTGCATTCTGAGTA+TGG | - | chr7.4:36274594-36274613 | MS.gene81997:CDS | 55.0% | |
| GTGAAGTCAGGGGCTCAGTA+TGG | - | chr7.4:36274540-36274559 | MS.gene81997:CDS | 55.0% | |
| GTGAGGTCAGGGTCTCAGTA+TGG | - | chr7.4:36276481-36276500 | MS.gene81997:CDS | 55.0% | |
| TACTCAGAATGCACCCGAGC+CGG | + | chr7.4:36274594-36274613 | None:intergenic | 55.0% | |
| TTATCGCCATCATCCGGCTC+GGG | - | chr7.4:36274578-36274597 | MS.gene81997:CDS | 55.0% | |
| ! | CCAGACGGAGTCTAGAGCAA+TGG | - | chr7.4:36276752-36276771 | MS.gene81997:CDS | 55.0% |
| ! | CCATTGCTCTAGACTCCGTC+TGG | + | chr7.4:36276755-36276774 | None:intergenic | 55.0% |
| ! | GCTACTTTGCTTAGTGGCGG+CGG | - | chr7.4:36275005-36275024 | MS.gene81997:intron | 55.0% |
| ! | GGGGCTACTTTGCTTAGTGG+CGG | - | chr7.4:36275002-36275021 | MS.gene81997:intron | 55.0% |
| !! | CCGGTGGAAGCATCTTCAAC+AGG | - | chr7.4:36274942-36274961 | MS.gene81997:intron | 55.0% |
| !! | GCCGTTTTCACAACAACCGG+TGG | - | chr7.4:36274926-36274945 | MS.gene81997:intron | 55.0% |
| AATGCACCCGAGCCGGATGA+TGG | + | chr7.4:36274587-36274606 | None:intergenic | 60.0% | |
| CAACAGGGGAGAGCGGGAAA+AGG | - | chr7.4:36274958-36274977 | MS.gene81997:intron | 60.0% | |
| CGTGCTTTGGTCGACCTGTG+AGG | - | chr7.4:36276254-36276273 | MS.gene81997:CDS | 60.0% | |
| TTGTGAGTCCAGGTCCGCCC+AGG | - | chr7.4:36274877-36274896 | MS.gene81997:intron | 65.0% | |
| GGGAAACGCCTGGGCGGACC+TGG | + | chr7.4:36274888-36274907 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 36274189 | 36276792 | 36274189 | ID=MS.gene81997 |
| chr7.4 | mRNA | 36274189 | 36276792 | 36274189 | ID=MS.gene81997.t1;Parent=MS.gene81997 |
| chr7.4 | exon | 36276147 | 36276792 | 36276147 | ID=MS.gene81997.t1.exon1;Parent=MS.gene81997.t1 |
| chr7.4 | CDS | 36276147 | 36276792 | 36276147 | ID=cds.MS.gene81997.t1;Parent=MS.gene81997.t1 |
| chr7.4 | exon | 36275895 | 36276017 | 36275895 | ID=MS.gene81997.t1.exon2;Parent=MS.gene81997.t1 |
| chr7.4 | CDS | 36275895 | 36276017 | 36275895 | ID=cds.MS.gene81997.t1;Parent=MS.gene81997.t1 |
| chr7.4 | exon | 36274189 | 36274763 | 36274189 | ID=MS.gene81997.t1.exon3;Parent=MS.gene81997.t1 |
| chr7.4 | CDS | 36274189 | 36274763 | 36274189 | ID=cds.MS.gene81997.t1;Parent=MS.gene81997.t1 |
| Gene Sequence |
| Protein sequence |
