AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054472


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054472.t1 MTR_6g016870 94.468 235 13 0 1 235 97 331 8.68e-161 451
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054472.t1 AT5G15880 51.351 259 116 5 1 257 96 346 1.91e-71 223

Find 0 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTCTAATAAATAGTTA+TGG + 42364:7847-7866 MS.gene054472:intron 10.0%
!! TATTTATTTATACCAAAAAA+AGG + 42364:8251-8270 MS.gene054472:intron 10.0%
!! TGTTAAAATATTATACTTAA+TGG + 42364:5669-5688 MS.gene054472:intron 10.0%
!! AAATGAATTATTCTATCAAA+AGG + 42364:6631-6650 MS.gene054472:intron 15.0%
!! ATAGTTATACATTCATATAA+TGG + 42364:5142-5161 MS.gene054472:intron 15.0%
!! ATATTATACTTAATGGTTAA+TGG + 42364:5676-5695 MS.gene054472:intron 15.0%
!! CATTTAGCAATTATTAATTA+TGG - 42364:4477-4496 None:intergenic 15.0%
!! GAATATATAACTATATTTCA+TGG + 42364:8290-8309 MS.gene054472:intron 15.0%
!! TAAACATAATTGTATTTATC+AGG + 42364:7348-7367 MS.gene054472:intron 15.0%
!! TTTATGATTTCTATTTATCT+AGG - 42364:7763-7782 None:intergenic 15.0%
!!! AACTAAATTGATAATTCAAT+AGG + 42364:5390-5409 MS.gene054472:intron 15.0%
!!! TCAAGTATCAATAATATTTT+AGG - 42364:7690-7709 None:intergenic 15.0%
!! AAATAGATAGAGAAAATAGA+GGG + 42364:4773-4792 MS.gene054472:intron 20.0%
!! AACAAAATAAAGAAAAACAG+AGG + 42364:4855-4874 MS.gene054472:intron 20.0%
!! AGCAATTATTAATTATGGAT+TGG - 42364:4472-4491 None:intergenic 20.0%
!! ATAAGTAAGATATAATACCT+GGG - 42364:6000-6019 None:intergenic 20.0%
!! ATTGGAGAACTTATTAAAAT+TGG + 42364:4297-4316 MS.gene054472:intron 20.0%
!! ATTTATACCAAAAAAAGGAA+AGG + 42364:8256-8275 MS.gene054472:intron 20.0%
!! CAATAAAAACGATAAGATTA+CGG - 42364:6705-6724 None:intergenic 20.0%
!! GAATAAAATCAAGGAAAAAA+TGG + 42364:3537-3556 MS.gene054472:CDS 20.0%
!! TATATATAACAAGAAGTTTC+TGG + 42364:7489-7508 MS.gene054472:intron 20.0%
!! TGAATTATCAATTTAGTTGA+AGG - 42364:5388-5407 None:intergenic 20.0%
!! TTAAATTATTGTTTCAGTTC+TGG - 42364:5851-5870 None:intergenic 20.0%
!! TTATGTTTATATATGTGTGT+CGG + 42364:6021-6040 MS.gene054472:intron 20.0%
!! TTCATTCAAAACTATAGTTA+TGG + 42364:5319-5338 MS.gene054472:intron 20.0%
!!! ATACATTCATATAATGGAAA+GGG + 42364:5148-5167 MS.gene054472:intron 20.0%
!!! ATTTTATTTTCAGAGTTCAA+TGG + 42364:5907-5926 MS.gene054472:intron 20.0%
!!! GCATTTAATTTGCATTTAAA+AGG - 42364:5639-5658 None:intergenic 20.0%
!!! GTTGTTTTTATAAGCTATAT+TGG + 42364:4279-4298 MS.gene054472:intron 20.0%
!!! TATACATTCATATAATGGAA+AGG + 42364:5147-5166 MS.gene054472:intron 20.0%
!!! TGTTCATTTCTTTTAAGAAA+TGG - 42364:5221-5240 None:intergenic 20.0%
!!! TTGCAAGATTTTATGATAAA+AGG + 42364:7646-7665 MS.gene054472:intron 20.0%
!!! TTTTTCTTTATTTTGTTGCA+TGG - 42364:4852-4871 None:intergenic 20.0%
!!! TTTTTTTCCTTTCCTTTTTT+TGG - 42364:8266-8285 None:intergenic 20.0%
! AAAACTATACCAAGTTCAAA+TGG - 42364:6295-6314 None:intergenic 25.0%
! AAAGCAACCAAATACAAAAA+AGG - 42364:6124-6143 None:intergenic 25.0%
! AACAACTATGCTAGAAAAAT+TGG + 42364:3931-3950 MS.gene054472:CDS 25.0%
! AACAAGATAAATAATAGAGC+TGG + 42364:3881-3900 MS.gene054472:CDS 25.0%
! AACTTATTTCAATAAGCTAG+AGG - 42364:4439-4458 None:intergenic 25.0%
! AATAAAAGAAAGAATCCAGT+TGG + 42364:6654-6673 MS.gene054472:intron 25.0%
! AATAAGCTATTTATCCAAAC+AGG - 42364:4152-4171 None:intergenic 25.0%
! ACATTAGATAAACAACTTCA+TGG + 42364:6826-6845 MS.gene054472:CDS 25.0%
! ACGACTATTTGATTGATTAT+CGG + 42364:6988-7007 MS.gene054472:intron 25.0%
! AGAAAAAACAGAGAAAATAG+AGG + 42364:5491-5510 MS.gene054472:intron 25.0%
! ATAAAAGAAAGAATCCAGTT+GGG + 42364:6655-6674 MS.gene054472:intron 25.0%
! ATATTCATAATTTGACAGCA+AGG + 42364:8195-8214 MS.gene054472:intron 25.0%
! ATCAATTTAGTTGAAGGAAA+TGG - 42364:5382-5401 None:intergenic 25.0%
! CAAAAAAAACAGAGGAAAAA+TGG + 42364:4895-4914 MS.gene054472:intron 25.0%
! CATAAGTAAGATATAATACC+TGG - 42364:6001-6020 None:intergenic 25.0%
! GAAACATAAACAATGAAGTA+TGG - 42364:6887-6906 None:intergenic 25.0%
! GAAATAGATAGAGAAAATAG+AGG + 42364:4772-4791 MS.gene054472:intron 25.0%
! GTCATAATCAACTAAGAAAA+AGG - 42364:7424-7443 None:intergenic 25.0%
! TAAAAGGAAGAGAAAATAAC+AGG + 42364:7662-7681 MS.gene054472:intron 25.0%
! TAAAATCAAGGAAAAAATGG+AGG + 42364:3540-3559 MS.gene054472:CDS 25.0%
! TAAGTAAGATATAATACCTG+GGG - 42364:5999-6018 None:intergenic 25.0%
! TAATTGCTAAATGATTGAAG+TGG + 42364:4484-4503 MS.gene054472:intron 25.0%
! TAGATGTATTTAGAGACATT+GGG + 42364:4617-4636 MS.gene054472:intron 25.0%
! TCAATTTAGTTGAAGGAAAT+GGG - 42364:5381-5400 None:intergenic 25.0%
! TTAGATGTATTTAGAGACAT+TGG + 42364:4616-4635 MS.gene054472:intron 25.0%
! TTATGTGATTTCTTGTATGT+TGG + 42364:6362-6381 MS.gene054472:intron 25.0%
! TTTAGTGATATGTTACCAAA+TGG + 42364:6441-6460 MS.gene054472:intron 25.0%
! TTTATGTGTCCCTATAAATA+GGG - 42364:7734-7753 None:intergenic 25.0%
!! AGAAATCATAAACTGATTCT+AGG + 42364:7771-7790 MS.gene054472:intron 25.0%
!! CTAGGATGTATTTTCTTTTT+TGG + 42364:6572-6591 MS.gene054472:intron 25.0%
!! TACATTCATATAATGGAAAG+GGG + 42364:5149-5168 MS.gene054472:intron 25.0%
!! TCAAGAACTTGTTTATAGTA+GGG + 42364:6230-6249 MS.gene054472:intron 25.0%
!! TCATTTAGAAAAGTACAAAC+AGG - 42364:6617-6636 None:intergenic 25.0%
!! TTTTCTTAGTTGATTATGAC+TGG + 42364:7424-7443 MS.gene054472:intron 25.0%
!!! AAAAGCATTAGAGAAGAAAT+GGG + 42364:5940-5959 MS.gene054472:CDS 25.0%
!!! AAGTGCTTTTTCATATACTA+TGG + 42364:4125-4144 MS.gene054472:intron 25.0%
!!! ACTTGGTATAGTTTTGTTTA+TGG + 42364:6300-6319 MS.gene054472:intron 25.0%
!!! AGTGCTTTTTCATATACTAT+GGG + 42364:4126-4145 MS.gene054472:intron 25.0%
!!! CTTGGTATAGTTTTGTTTAT+GGG + 42364:6301-6320 MS.gene054472:intron 25.0%
!!! TAAAAGCATTAGAGAAGAAA+TGG + 42364:5939-5958 MS.gene054472:CDS 25.0%
!!! TTAATGGACTTTTAAAGTGA+TGG + 42364:5692-5711 MS.gene054472:intron 25.0%
!!! TTACTTTTGAGTTTGTTGTT+GGG + 42364:7880-7899 MS.gene054472:intron 25.0%
!!! TTTTCTTTGACTATTTGTTG+CGG + 42364:5742-5761 MS.gene054472:intron 25.0%
!!! TTTTGTTTTGGAGTATTTCT+AGG + 42364:6519-6538 MS.gene054472:intron 25.0%
!!! TTTTTGTATTTGGTTGCTTT+AGG + 42364:6124-6143 MS.gene054472:intron 25.0%
AAAAACGGCAAAAAAAACAG+AGG + 42364:4887-4906 MS.gene054472:intron 30.0%
AAAATGAACCTGAGTAAAGT+CGG + 42364:5579-5598 MS.gene054472:intron 30.0%
AAACACTAGACCCTATTTAT+AGG + 42364:7721-7740 MS.gene054472:intron 30.0%
AAATACAAAAAAGGCAAGGA+AGG - 42364:6115-6134 None:intergenic 30.0%
AACACTAGACCCTATTTATA+GGG + 42364:7722-7741 MS.gene054472:intron 30.0%
AACCAAATACAAAAAAGGCA+AGG - 42364:6119-6138 None:intergenic 30.0%
AAGATTAGACGTTATGATAG+CGG + 42364:7617-7636 MS.gene054472:intron 30.0%
ACATGCAGAATAAAACCATT+TGG - 42364:6459-6478 None:intergenic 30.0%
AGAAAATAGAGGAAAAACAG+AGG + 42364:5502-5521 MS.gene054472:intron 30.0%
AGACTAATTCGATACATTCA+AGG + 42364:4579-4598 MS.gene054472:intron 30.0%
AGCAAGGTTTGATGTTAATA+GGG + 42364:8211-8230 MS.gene054472:intron 30.0%
ATGAAATTGAAAAGAAGCTG+AGG + 42364:3780-3799 MS.gene054472:CDS 30.0%
CAATTGCGAGAATAAAATCA+AGG + 42364:3528-3547 MS.gene054472:CDS 30.0%
CATAAAAACAGAGGTAATAG+AGG + 42364:4813-4832 MS.gene054472:intron 30.0%
CGACTATTTGATTGATTATC+GGG + 42364:6989-7008 MS.gene054472:intron 30.0%
GAATTGATGAAAACAGCTTA+TGG - 42364:4346-4365 None:intergenic 30.0%
GGATCAAAAGAAACAAACAA+AGG - 42364:6094-6113 None:intergenic 30.0%
GTGAAAATCACTTAACAGAA+AGG - 42364:7959-7978 None:intergenic 30.0%
GTTTATGTGTCCCTATAAAT+AGG - 42364:7735-7754 None:intergenic 30.0%
TAAAAGAAAGAATCCAGTTG+GGG + 42364:6656-6675 MS.gene054472:intron 30.0%
TCAAATAAGCCAATCTAAAC+AGG + 42364:4405-4424 MS.gene054472:intron 30.0%
TCAATAAGCTAGAGGAAATA+GGG - 42364:4431-4450 None:intergenic 30.0%
TCTGTACTTAATGTGTACAT+CGG + 42364:6157-6176 MS.gene054472:intron 30.0%
TCTTCTGTCAAGTATCAATT+CGG + 42364:4531-4550 MS.gene054472:intron 30.0%
TGAAATTGAAAAGAAGCTGA+GGG + 42364:3781-3800 MS.gene054472:CDS 30.0%
TTATTAGACTCATCTTCAGA+AGG - 42364:7039-7058 None:intergenic 30.0%
TTATTCAGTCAGCTATTCTA+GGG + 42364:4093-4112 MS.gene054472:intron 30.0%
TTCAATAAGCTAGAGGAAAT+AGG - 42364:4432-4451 None:intergenic 30.0%
TTGTGTTTATGTTCTTTCAC+CGG - 42364:4699-4718 None:intergenic 30.0%
! AACAGATGTAACATGAGTTT+TGG - 42364:7532-7551 None:intergenic 30.0%
! ATTATTGTTTCAGTTCTGGT+AGG - 42364:5847-5866 None:intergenic 30.0%
! CTTGATTTTATTCTCGCAAT+TGG - 42364:3530-3549 None:intergenic 30.0%
! GTCAAGAACTTGTTTATAGT+AGG + 42364:6229-6248 MS.gene054472:intron 30.0%
! TCAAGAAATTTGCAAGTTGA+AGG - 42364:8020-8039 None:intergenic 30.0%
! TTATTTTCAGAGTTCAATGG+AGG + 42364:5910-5929 MS.gene054472:intron 30.0%
!!! ATTACCTCTGTTTTTATGCT+TGG - 42364:4811-4830 None:intergenic 30.0%
!!! CGCTATTTTTCAAAAGAAAC+AGG - 42364:5348-5367 None:intergenic 30.0%
!!! GTGGTTTGCTATGTATTTTT+GGG + 42364:3685-3704 MS.gene054472:intron 30.0%
!!! GTTACTTTTGAGTTTGTTGT+TGG + 42364:7879-7898 MS.gene054472:intron 30.0%
!!! GTTGTTGATTCGTATGTTTT+GGG + 42364:3744-3763 MS.gene054472:intron 30.0%
!!! TGTTGTTGATTCGTATGTTT+TGG + 42364:3743-3762 MS.gene054472:intron 30.0%
!!! TTCCTTGCCTTTTTTGTATT+TGG + 42364:6114-6133 MS.gene054472:intron 30.0%
!!! TTGTTGATTCGTATGTTTTG+GGG + 42364:3745-3764 MS.gene054472:intron 30.0%
AAAAGAAAGAATCCAGTTGG+GGG + 42364:6657-6676 MS.gene054472:intron 35.0%
AAACGATAAGATTACGGAGA+TGG - 42364:6699-6718 None:intergenic 35.0%
AACCCTCAGATATCAAAGAT+TGG - 42364:3850-3869 None:intergenic 35.0%
AAGAAAAACAGAGGAAACAG+AGG + 42364:4864-4883 MS.gene054472:intron 35.0%
AATCAAGGAAAAAATGGAGG+AGG + 42364:3543-3562 MS.gene054472:CDS 35.0%
AATCTTTGATATCTGAGGGT+TGG + 42364:3849-3868 MS.gene054472:CDS 35.0%
AATTTCTTCAAGTAAGCCCT+CGG - 42364:7093-7112 None:intergenic 35.0%
ACAAGCACACAAAAAAACAG+AGG + 42364:5527-5546 MS.gene054472:intron 35.0%
ACCATGGAAGTCTAATCTAT+AGG + 42364:7977-7996 MS.gene054472:intron 35.0%
AGAAAATAGAGGGAAAACAG+AGG + 42364:4783-4802 MS.gene054472:intron 35.0%
AGCCAATCTTTGATATCTGA+GGG + 42364:3845-3864 MS.gene054472:CDS 35.0%
AGGTAATAGAGGAAAAACAG+AGG + 42364:4824-4843 MS.gene054472:intron 35.0%
AGTTCAGAAAGATTTACCGT+TGG - 42364:5064-5083 None:intergenic 35.0%
ATAAGATTACGGAGATGGAA+CGG - 42364:6694-6713 None:intergenic 35.0%
ATACATAGCAAACCACCAAA+TGG - 42364:3681-3700 None:intergenic 35.0%
ATCAAGATCCTAAGTAGGAT+TGG + 42364:5428-5447 MS.gene054472:intron 35.0%
ATCTTTGATATCTGAGGGTT+GGG + 42364:3850-3869 MS.gene054472:CDS 35.0%
CAATAAGTAAATGCTCTCTC+AGG - 42364:8073-8092 None:intergenic 35.0%
CAGCAAGGTTTGATGTTAAT+AGG + 42364:8210-8229 MS.gene054472:intron 35.0%
CAGTGCATGCATCATAAAAT+TGG - 42364:5289-5308 None:intergenic 35.0%
CTTATCTAGTGGCATAAGTT+TGG - 42364:4384-4403 None:intergenic 35.0%
CTTATTCAGTCAGCTATTCT+AGG + 42364:4092-4111 MS.gene054472:intron 35.0%
GCAAGGTTTGATGTTAATAG+GGG + 42364:8212-8231 MS.gene054472:intron 35.0%
GCTGCAAAACAAGTTAAGAA+AGG - 42364:6793-6812 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAG+TGG - 42364:4395-4414 None:intergenic 35.0%
GGAAAAATGGCAAAAAACAG+AGG + 42364:4908-4927 MS.gene054472:intron 35.0%
GGTGAAAGAACATAAACACA+AGG + 42364:4698-4717 MS.gene054472:intron 35.0%
TAAACACAAGGAACGTAACA+CGG + 42364:4710-4729 MS.gene054472:intron 35.0%
TAAGATATAATACCTGGGGA+AGG - 42364:5995-6014 None:intergenic 35.0%
TCAAGTCAGTATCATTATCC+AGG + 42364:8386-8405 MS.gene054472:CDS 35.0%
TCATGATCAAGATCCTAAGT+AGG + 42364:5423-5442 MS.gene054472:intron 35.0%
TCCTATAGATTAGACTTCCA+TGG - 42364:7981-8000 None:intergenic 35.0%
TGATTGATTGCAATGTAGTC+AGG + 42364:4647-4666 MS.gene054472:intron 35.0%
TGGAAAGATTGAATGCACAA+TGG + 42364:7132-7151 MS.gene054472:CDS 35.0%
TTAGAGATTAATGCGACCAA+CGG + 42364:5045-5064 MS.gene054472:intron 35.0%
TTAGTTGAAGGAAATGGGTA+AGG - 42364:5376-5395 None:intergenic 35.0%
! AAATGATTGAAGTGGTGTTG+TGG + 42364:4492-4511 MS.gene054472:intron 35.0%
! AATTAGTCTCCAATTTCTCG+AGG - 42364:4568-4587 None:intergenic 35.0%
! ATTAGTCTCCAATTTCTCGA+GGG - 42364:4567-4586 None:intergenic 35.0%
! ATTCATATAATGGAAAGGGG+AGG + 42364:5152-5171 MS.gene054472:intron 35.0%
! CTAAAGAACTTGATAGCAGT+TGG + 42364:5099-5118 MS.gene054472:intron 35.0%
! CTGTTAAGTGATTTTCACCA+TGG + 42364:7961-7980 MS.gene054472:intron 35.0%
! TCCTCTCGTTAACTTTTCTT+CGG - 42364:7579-7598 None:intergenic 35.0%
! TGATAAGGTACATGGTTTGT+CGG + 42364:7220-7239 MS.gene054472:CDS 35.0%
! TGCAAAATGCCATTTGAACT+TGG + 42364:6283-6302 MS.gene054472:intron 35.0%
! TTGTATTTGGTTGCTTTAGG+TGG + 42364:6127-6146 MS.gene054472:intron 35.0%
!! GCTAGAAATCGTTTTGTTAG+AGG + 42364:7191-7210 MS.gene054472:CDS 35.0%
!!! ACTCTTGTTGGGTTTTGTTT+TGG + 42364:6507-6526 MS.gene054472:intron 35.0%
!!! GGTGGTTTGCTATGTATTTT+TGG + 42364:3684-3703 MS.gene054472:intron 35.0%
!!! GTTTTGGAGTATTTCTAGGT+TGG + 42364:6523-6542 MS.gene054472:intron 35.0%
AAATGCTCTCTCAGGTAACT+AGG - 42364:8065-8084 None:intergenic 40.0%
AGTAAGCAATTTCATGTGCC+TGG - 42364:8407-8426 None:intergenic 40.0%
ATGCAGACAGAAACTCTTGT+TGG + 42364:6495-6514 MS.gene054472:intron 40.0%
ATTACTACGGACCAAGTTAG+AGG + 42364:3570-3589 MS.gene054472:CDS 40.0%
CAAACCATGTACCTTATCAG+AGG - 42364:7219-7238 None:intergenic 40.0%
CAGAGGAAACAGAGGAAAAA+CGG + 42364:4872-4891 MS.gene054472:intron 40.0%
CAGCCAATCTTTGATATCTG+AGG + 42364:3844-3863 MS.gene054472:CDS 40.0%
CAGTGTGATCGATCAATCAA+AGG - 42364:6200-6219 None:intergenic 40.0%
CTCAGATATCAAAGATTGGC+TGG - 42364:3846-3865 None:intergenic 40.0%
CTTAATGTGTACATCGGTCA+TGG + 42364:6163-6182 MS.gene054472:intron 40.0%
CTTTCTATCGCCACACAAAA+TGG + 42364:6949-6968 MS.gene054472:intron 40.0%
GAAATAGGGCCTGTTTAGAT+TGG - 42364:4417-4436 None:intergenic 40.0%
GACATGCTATATTTCGTTCG+AGG + 42364:5184-5203 MS.gene054472:intron 40.0%
GTAGCTATCTGTCCATTCTT+GGG - 42364:8345-8364 None:intergenic 40.0%
GTGACGCTTGCATTAATTGT+TGG + 42364:5801-5820 MS.gene054472:intron 40.0%
TAGCTATCTGTCCATTCTTG+GGG - 42364:8344-8363 None:intergenic 40.0%
TCAGCAACTAGCAGTTAAAC+AGG + 42364:6855-6874 MS.gene054472:CDS 40.0%
TCAGGTAACTAGGAATAGGA+AGG - 42364:8055-8074 None:intergenic 40.0%
TCATATACTATGGGCCTGTT+TGG + 42364:4135-4154 MS.gene054472:intron 40.0%
TCTCTCAGGTAACTAGGAAT+AGG - 42364:8059-8078 None:intergenic 40.0%
TGAAGAAATTCACCCGAAAG+AGG + 42364:7103-7122 MS.gene054472:CDS 40.0%
TGCAGACAGAAACTCTTGTT+GGG + 42364:6496-6515 MS.gene054472:intron 40.0%
TGTAGCTATCTGTCCATTCT+TGG - 42364:8346-8365 None:intergenic 40.0%
! AGATCCTAAGTAGGATTGGT+CGG + 42364:5432-5451 MS.gene054472:intron 40.0%
! AGATTAGTCCCTCGAGAAAT+TGG + 42364:4556-4575 MS.gene054472:intron 40.0%
! CAAAGCAATGCATTGACGTA+TGG - 42364:8431-8450 None:intergenic 40.0%
! CATGGTTTGTCGGATTATGA+TGG + 42364:7230-7249 MS.gene054472:CDS 40.0%
! TAAGTTTGGTGAGACTGTTC+AGG - 42364:4370-4389 None:intergenic 40.0%
! TTCTAGGTTGGACATGTAGA+GGG + 42364:6535-6554 MS.gene054472:intron 40.0%
! TTTCTAGGTTGGACATGTAG+AGG + 42364:6534-6553 MS.gene054472:intron 40.0%
!! AAAGTACAAACAGGAGCATC+AGG - 42364:6608-6627 None:intergenic 40.0%
!! AAGTACAAACAGGAGCATCA+GGG - 42364:6607-6626 None:intergenic 40.0%
!! TGATACTGACTTGAGCTTTG+AGG - 42364:8380-8399 None:intergenic 40.0%
!! TTTGTTGTTGGGAGAGATGA+TGG + 42364:7891-7910 MS.gene054472:intron 40.0%
!!! ATTCGTATGTTTTGGGGTAC+AGG + 42364:3751-3770 MS.gene054472:intron 40.0%
ACACGGTTCGTAAGTAGGAT+TGG + 42364:4727-4746 MS.gene054472:intron 45.0%
ACGTAACACGGTTCGTAAGT+AGG + 42364:4722-4741 MS.gene054472:intron 45.0%
AGAAATTCACCCGAAAGAGG+TGG + 42364:7106-7125 MS.gene054472:CDS 45.0%
ATCGTGCTTCGACTTTACTC+TGG - 42364:4952-4971 None:intergenic 45.0%
ATGTATGACAGCCCCAAGAA+TGG + 42364:8330-8349 MS.gene054472:intron 45.0%
CGATCAATCAAAGGTTCCAG+AGG - 42364:6191-6210 None:intergenic 45.0%
CGGATTATGATGGTCATCAG+AGG + 42364:7240-7259 MS.gene054472:CDS 45.0%
GATCGAGATCCTACTAGGAT+CGG + 42364:4669-4688 MS.gene054472:intron 45.0%
GCCGAAGAAAAGTTAACGAG+AGG + 42364:7575-7594 MS.gene054472:intron 45.0%
GCTTCGACTTTACTCTGGTT+CGG - 42364:4947-4966 None:intergenic 45.0%
GGAGCCAAGCATAAAAACAG+AGG + 42364:4804-4823 MS.gene054472:intron 45.0%
GGATGAGAAGAAGAAAGAGC+TGG + 42364:3952-3971 MS.gene054472:CDS 45.0%
TAAGTAGCATAAGCCTCTGC+TGG - 42364:7298-7317 None:intergenic 45.0%
TATACACACACACACACACG+AGG - 42364:7473-7492 None:intergenic 45.0%
TGGAGGAGGCTGAATTACTA+CGG + 42364:3557-3576 MS.gene054472:CDS 45.0%
TGTTAGAGGCTCCTCTGATA+AGG + 42364:7205-7224 MS.gene054472:CDS 45.0%
TTTCAGTTCTGCCTGCAGAA+TGG - 42364:7274-7293 None:intergenic 45.0%
TTTGATATCTGAGGGTTGGG+AGG + 42364:3853-3872 MS.gene054472:CDS 45.0%
! AGCAGAGGCTTATGCTACTT+AGG + 42364:7297-7316 MS.gene054472:CDS 45.0%
! ATGTGTGTCGGTGTATGTGA+AGG + 42364:6033-6052 MS.gene054472:intron 45.0%
! GAGGCTTATGCTACTTAGGT+CGG + 42364:7301-7320 MS.gene054472:intron 45.0%
! GGTTCGTAAGTAGGATTGGT+AGG + 42364:4731-4750 MS.gene054472:intron 45.0%
! GTGTGTGTATGTGTGCCATT+TGG + 42364:3663-3682 MS.gene054472:intron 45.0%
!! AGTACAAACAGGAGCATCAG+GGG - 42364:6606-6625 None:intergenic 45.0%
!! TCAACCATCGCCATTTTGTG+TGG - 42364:6962-6981 None:intergenic 45.0%
!! TGAGCTTTGAGGCTAAGCAT+AGG - 42364:8369-8388 None:intergenic 45.0%
!! TGTGTATGTGTGCCATTTGG+TGG + 42364:3666-3685 MS.gene054472:intron 45.0%
!! TTGCGGCTTTGCATTTTGAC+TGG + 42364:5759-5778 MS.gene054472:intron 45.0%
!!! ATGTTTTGGGGTACAGGAGA+TGG + 42364:3757-3776 MS.gene054472:intron 45.0%
!!! TAATAAGATAATTTTAATTT+TGG - 42364:7386-7405 None:intergenic 5.0%
AAGATCGAGTCCCAGGTCAT+AGG - 42364:5006-5025 None:intergenic 50.0%
ACAACCTACCGATCCTTCAC+CGG - 42364:5458-5477 None:intergenic 50.0%
ACCTGAGTAAAGTCGGAGCA+CGG + 42364:5586-5605 MS.gene054472:intron 50.0%
AGAAAGAATCCAGTTGGGGG+TGG + 42364:6660-6679 MS.gene054472:intron 50.0%
AGGCTTCCATACCATTCTGC+AGG + 42364:7260-7279 MS.gene054472:CDS 50.0%
ATCGCCACACAAAATGGCGA+TGG + 42364:6955-6974 MS.gene054472:intron 50.0%
ATCGTGCGATCCTATGACCT+GGG + 42364:4993-5012 MS.gene054472:intron 50.0%
CAGCGTCTCTTCTCTAAGCT+GGG - 42364:3473-3492 None:intergenic 50.0%
CCAAGTTAGAGGTGAGACTG+AGG + 42364:3581-3600 MS.gene054472:intron 50.0%
CCTCAGTCTCACCTCTAACT+TGG - 42364:3584-3603 None:intergenic 50.0%
CTTTCCAGCTCCACCTCTTT+CGG - 42364:7119-7138 None:intergenic 50.0%
GAGATCCTACTAGGATCGGT+CGG + 42364:4673-4692 MS.gene054472:intron 50.0%
GCTTAGAGAAGAGACGCTGA+AGG + 42364:3474-3493 MS.gene054472:CDS 50.0%
GGCTCCTCTGATAAGGTACA+TGG + 42364:7212-7231 MS.gene054472:CDS 50.0%
GTAAAGTCGAAGCACGATCG+AGG + 42364:4954-4973 MS.gene054472:intron 50.0%
GTCAGGATCGAGATCCTACT+AGG + 42364:4664-4683 MS.gene054472:intron 50.0%
GTTCTGCCTGCAGAATGGTA+TGG - 42364:7269-7288 None:intergenic 50.0%
GTTGGACATGTAGAGGGACT+AGG + 42364:6541-6560 MS.gene054472:intron 50.0%
TACATCGGTCATGGATCCTC+TGG + 42364:6172-6191 MS.gene054472:intron 50.0%
TATGACCTGGGACTCGATCT+TGG + 42364:5005-5024 MS.gene054472:intron 50.0%
TCAGCGTCTCTTCTCTAAGC+TGG - 42364:3474-3493 None:intergenic 50.0%
TGCTTTCAGACACAAGCCGA+GGG + 42364:7074-7093 MS.gene054472:intron 50.0%
TTGCTTTCAGACACAAGCCG+AGG + 42364:7073-7092 MS.gene054472:intron 50.0%
TTTCCAGCTCCACCTCTTTC+GGG - 42364:7118-7137 None:intergenic 50.0%
!! GTACAAACAGGAGCATCAGG+GGG - 42364:6605-6624 None:intergenic 50.0%
!!! AGGGACTAGGCTGCTTTTCT+AGG + 42364:6554-6573 MS.gene054472:intron 50.0%
AAAGAAGCTGAGGGCTGAGC+TGG + 42364:3790-3809 MS.gene054472:CDS 55.0%
ACCGTGCTCCGACTTTACTC+AGG - 42364:5590-5609 None:intergenic 55.0%
GAATCAAAGCCACCCCCAAC+TGG - 42364:6672-6691 None:intergenic 55.0%
GATCGTGCGATCCTATGACC+TGG + 42364:4992-5011 MS.gene054472:intron 55.0%
GCACTTAAACAGCCTTCCCC+AGG + 42364:5980-5999 MS.gene054472:CDS 55.0%
GCAGAACTGAAAGCCAGCAG+AGG + 42364:7282-7301 MS.gene054472:CDS 55.0%
GTAAAGTCGGAGCACGGTTG+AGG + 42364:5592-5611 MS.gene054472:intron 55.0%
TGTAGCCAAGATCGAGTCCC+AGG - 42364:5013-5032 None:intergenic 55.0%
!! CCTAAGTAGGATTGGTCGGC+CGG + 42364:5436-5455 MS.gene054472:intron 55.0%
!! GAAGAAATGGGCTGCAGTGC+AGG + 42364:5952-5971 MS.gene054472:CDS 55.0%
CCGGCCGACCAATCCTACTT+AGG - 42364:5439-5458 None:intergenic 60.0%
GAGCACGGTTGAGGTGACGT+GGG + 42364:5601-5620 MS.gene054472:intron 60.0%
TCACCCGAAAGAGGTGGAGC+TGG + 42364:7112-7131 MS.gene054472:CDS 60.0%
TCCTACTAGGATCGGTCGGC+CGG + 42364:4677-4696 MS.gene054472:intron 60.0%
TTGGTCGGCCGGTGAAGGAT+CGG + 42364:5447-5466 MS.gene054472:intron 60.0%
!! GAAGCACGATCGAGGTGCTG+TGG + 42364:4962-4981 MS.gene054472:intron 60.0%
!! TAGGATTGGTCGGCCGGTGA+AGG + 42364:5442-5461 MS.gene054472:intron 60.0%
ACCGGCCGACCGATCCTAGT+AGG - 42364:4681-4700 None:intergenic 65.0%
GGAGCACGGTTGAGGTGACG+TGG + 42364:5600-5619 MS.gene054472:intron 65.0%
TCGGCCGGTGAAGGATCGGT+AGG + 42364:5451-5470 MS.gene054472:intron 65.0%


Chromosome Type Strat End Strand Name
42364 gene 3469 8458 3469 ID=MS.gene054472
42364 mRNA 3469 8458 3469 ID=MS.gene054472.t1;Parent=MS.gene054472
42364 exon 3469 3591 3469 ID=MS.gene054472.t1.exon1;Parent=MS.gene054472.t1
42364 CDS 3469 3591 3469 ID=cds.MS.gene054472.t1;Parent=MS.gene054472.t1
42364 exon 3773 3973 3773 ID=MS.gene054472.t1.exon2;Parent=MS.gene054472.t1
42364 CDS 3773 3973 3773 ID=cds.MS.gene054472.t1;Parent=MS.gene054472.t1
42364 exon 5920 6001 5920 ID=MS.gene054472.t1.exon3;Parent=MS.gene054472.t1
42364 CDS 5920 6001 5920 ID=cds.MS.gene054472.t1;Parent=MS.gene054472.t1
42364 exon 6812 6876 6812 ID=MS.gene054472.t1.exon4;Parent=MS.gene054472.t1
42364 CDS 6812 6876 6812 ID=cds.MS.gene054472.t1;Parent=MS.gene054472.t1
42364 exon 7083 7318 7083 ID=MS.gene054472.t1.exon5;Parent=MS.gene054472.t1
42364 CDS 7083 7318 7083 ID=cds.MS.gene054472.t1;Parent=MS.gene054472.t1
42364 exon 8341 8458 8341 ID=MS.gene054472.t1.exon6;Parent=MS.gene054472.t1
42364 CDS 8341 8458 8341 ID=cds.MS.gene054472.t1;Parent=MS.gene054472.t1
Gene Sequence

>MS.gene054472

GCCCAGCTTAGAGAAGAGACGCTGAAGGAAGAAAATGCTGCTTTCGAGAATGCTATATCCAATTGCGAGAATAAAATCAAGGAAAAAATGGAGGAGGCTGAATTACTACGGACCAAGTTAGAGGTGAGACTGAGGATTGTGATATGTATGTTGTATCTTGTACTGAATCAAAGTAGTTGTATGATGCTGTTAATGTGTGTGTATGTGTGCCATTTGGTGGTTTGCTATGTATTTTTGGGAATTGAAGTTCACTGCACGATGTTTTAATTATCGTTGTTGTTGATTCGTATGTTTTGGGGTACAGGAGATGGATGAAATTGAAAAGAAGCTGAGGGCTGAGCTGGAAAATATGCAGTCGAGATCTTCTGTCAATGCCAGCCAATCTTTGATATCTGAGGGTTGGGAGGAAGAAAACAAGATAAATAATAGAGCTGGCTTTGATGCAGATGCAGAAGCGTTAAAAACAACTATGCTAGAAAAATTGGATGAGAAGAAGAAAGAGCTGGTTTGTTCTTGTTTCTTTAATCACACGATTCTCTTTTGTCTTCTTAAAAATAACATATTGCTCAATACTGAACGAGTAAGAGTGCGTTTGAACTTTGAATATATAACTTGATTAAGCACTTATTCAGTCAGCTATTCTAGGGAGTTTATTTAAGTGCTTTTTCATATACTATGGGCCTGTTTGGATAAATAGCTTATTTGCAGCTATATCACAAGCACTTTTCATGATAAGCGCTTATGTGTAAGCTTGCATAAGTTAGTTTTATAGCAAAAGATAACGTTAAATTGTTTACGTATATGCTATAAGTTGTTTTTATAAGCTATATTGGAGAACTTATTAAAATTGGTTAAAAAAAGTTTATGAAAATCACCATAAGCTGTTTTCATCAATTCTCCTGAACAGTCTCACCAAACTTATGCCACTAGATAAGCTCAAATAAGCCAATCTAAACAGGCCCTATTTCCTCTAGCTTATTGAAATAAGTTTATCTTAAAACCAATCCATAATTAATAATTGCTAAATGATTGAAGTGGTGTTGTGGTTCGTGAATTTGCATTTCTTCTGTCAAGTATCAATTCGGTCAGATTAGTCCCTCGAGAAATTGGAGACTAATTCGATACATTCAAGGACTTATTTAGCTGATTAGATGTATTTAGAGACATTGGGTATGATTTGATTGATTGCAATGTAGTCAGGATCGAGATCCTACTAGGATCGGTCGGCCGGTGAAAGAACATAAACACAAGGAACGTAACACGGTTCGTAAGTAGGATTGGTAGGTTGTTGATAGAGTTGAGAGAAATAGATAGAGAAAATAGAGGGAAAACAGAGGAGCCAAGCATAAAAACAGAGGTAATAGAGGAAAAACAGAGGAACCATGCAACAAAATAAAGAAAAACAGAGGAAACAGAGGAAAAACGGCAAAAAAAACAGAGGAAAAATGGCAAAAAACAGAGGAAACAGAGCAAAACCGAACCAGAGTAAAGTCGAAGCACGATCGAGGTGCTGTGGCACGTAAGATCGTGCGATCCTATGACCTGGGACTCGATCTTGGCTACATTGTTTGATTGTTTAGAGATTAATGCGACCAACGGTAAATCTTTCTGAACTAAATTGATTATTGTTCTAAAGAACTTGATAGCAGTTGGACACTATCTCTCATAATATTATAGTTATACATTCATATAATGGAAAGGGGAGGAAGAGATTTGACATGCTATATTTCGTTCGAGGAGAGATCTAATCCATTTCTTAAAAGAAATGAACATCTCAATAAATAAAGTTTTAGTGTATAAATGTGTAATTAATGTCACCAATTTTATGATGCATGCACTGATATCATTTATTCATTCAAAACTATAGTTATGGACACCTGTTTCTTTTGAAAAATAGCGAGAATCCTTACCCATTTCCTTCAACTAAATTGATAATTCAATAGGTACAGTGTAGTCATGATCAAGATCCTAAGTAGGATTGGTCGGCCGGTGAAGGATCGGTAGGTTGTTCATAGAGTTGAGAGAAAAAACAGAGAAAATAGAGGAAAAACAGAGGAAACAAGCACACAAAAAAACAGAGGTAAAACAGCAAAAAACAGAAAACAGAGCAAAAATGAACCTGAGTAAAGTCGGAGCACGGTTGAGGTGACGTGGGTACAATAGATTTCCTTTTAAATGCAAATTAAATGCAATAATTTAGTGTTAAAATATTATACTTAATGGTTAATGGACTTTTAAAGTGATGGTGCAATAAAGCATTGACTTTTGAATGTTTTTCTTTGACTATTTGTTGCGGCTTTGCATTTTGACTGGTAGTCTTCAATTCTGATTTGTGACGCTTGCATTAATTGTTGGTAGCATACTTGATTTAGTTACCTACCAGAACTGAAACAATAATTTAACTAAGTTGAAATATTGTTTTCATGTGAAGAACTCTTATTTTATTTTCAGAGTTCAATGGAGGATACTGTAAAAGCATTAGAGAAGAAATGGGCTGCAGTGCAGGAAAATGCACTTAAACAGCCTTCCCCAGGTATTATATCTTACTTATGTTATGTTTATATATGTGTGTCGGTGTATGTGAAGGAAAAATTAAATTATTATCTGAGTGCATAATGATGTCCTTTGTTTGTTTCTTTTGATCCTTCCTTGCCTTTTTTGTATTTGGTTGCTTTAGGTGGCATATATTCTGTACTTAATGTGTACATCGGTCATGGATCCTCTGGAACCTTTGATTGATCGATCACACTGAGTAAAGATGTCAAGAACTTGTTTATAGTAGGGAAGTTTCAAAGCATGATTAATAATTATGTATGCAAAATGCCATTTGAACTTGGTATAGTTTTGTTTATGGGCACTAAATGATTCAATAAAAATTCAACATTGCACTGTATTATGTGATTTCTTGTATGTTGGAAAATCGTCAAGCATGTTTGCTTTTAAACATTAAATTCGAGAAGTTATAGTACTTCTTTAGTGATATGTTACCAAATGGTTTTATTCTGCATGTAATAATAGTTTTCAAAATGCAGACAGAAACTCTTGTTGGGTTTTGTTTTGGAGTATTTCTAGGTTGGACATGTAGAGGGACTAGGCTGCTTTTCTAGGATGTATTTTCTTTTTTGGTTTTTTTCCCCCTGATGCTCCTGTTTGTACTTTTCTAAATGAATTATTCTATCAAAAGGAATAAAAGAAAGAATCCAGTTGGGGGTGGCTTTGATTCCGTTCCATCTCCGTAATCTTATCGTTTTTATTGTTTAAATTCTGTCACTAATTTTGCATACTTAAGCTTCATCTTGCAAGCATTATTTTAGCTTTAAACCTTTCTTAACTTGTTTTGCAGCACAAAGAGAGAAGACATTAGATAAACAACTTCATGGTTTACTTCAGCAACTAGCAGTTAAACAGGTGCTTTCCATACTTCATTGTTTATGTTTCTACGTGCTTGATATTTTGTGTTTAAAAAATAGTTTATTTTATCTTTCTATCGCCACACAAAATGGCGATGGTTGAATAATAACGACTATTTGATTGATTATCGGGTTGTTAATTTTGTGTATTTGATTGCCTTCTGAAGATGAGTCTAATAAGCTGTCTTTCTTTCTTGCTTTCAGACACAAGCCGAGGGCTTACTTGAAGAAATTCACCCGAAAGAGGTGGAGCTGGAAAGATTGAATGCACAATGGCGACAACTGCAAAGCAACAACTCAGACGTGAACAATGCTAGAAATCGTTTTGTTAGAGGCTCCTCTGATAAGGTACATGGTTTGTCGGATTATGATGGTCATCAGAGGCTTCCATACCATTCTGCAGGCAGAACTGAAAGCCAGCAGAGGCTTATGCTACTTAGGTCGGCATTTGTGCTTTATATTTTAGCGTTAAACATAATTGTATTTATCAGGATATCATTTTGACCAAAATTAAAATTATCTTATTACATTTTACGACTGAACCTTTTTCTTAGTTGATTATGACTGGACCTTTGTTTGTACTTATGAATACCTCGTGTGTGTGTGTGTGTATATATAACAAGAAGTTTCTGGAAAAGTTAACTCGTTAACCAAAACTCATGTTACATCTGTTCATACTGCGTAGAGTTACTTACAGCCGAAGAAAAGTTAACGAGAGGAAAATCGTTGAATACAAAAAAGATTAGACGTTATGATAGCGGTTGAAGTTGCAAGATTTTATGATAAAAGGAAGAGAAAATAACAGGAACCTAAAATATTATTGATACTTGATATAAAAAACTAAACACTAGACCCTATTTATAGGGACACATAAACTCAATCCTAGATAAATAGAAATCATAAACTGATTCTAGGAAATAACTTACAATACTCAAATATAATATAAAAGATATTATGAGATTTTTTATAATATTCTAATAAATAGTTATGGTAAGCTTTAGTTACTTTTGAGTTTGTTGTTGGGAGAGATGATGGTTGATAAAGAAGCAACTAGTTCAAGTTATTATTGTTCTGTGACCTTTCTGTTAAGTGATTTTCACCATGGAAGTCTAATCTATAGGATGAAGTAATTTGTGTTCCTTCAACTTGCAAATTTCTTGAATCTTGTATATACCTTCCTATTCCTAGTTACCTGAGAGAGCATTTACTTATTGAATCGAATTTAGAGATTATGCATCGACTATAGAACTTCATCATATCAGATAGTTTTACACACTCAACATAAAATTCTTAAACTCTTGAATATTTAAATTTTTATATTCATAATTTGACAGCAAGGTTTGATGTTAATAGGGGAAAGAATATATAAGTATATTTATTTATACCAAAAAAAGGAAAGGAAAAAAAAAAAGAATATATAACTATATTTCATGGTTTTTTTTGTTCATGATATGTATGACAGCCCCAAGAATGGACAGATAGCTACACCTATGCTTAGCCTCAAAGCTCAAGTCAGTATCATTATCCAGGCACATGAAATTGCTTACTACCATACGTCAATGCATTGCTTTGAGATCTAG

Protein sequence

>MS.gene054472.t1

AQLREETLKEENAAFENAISNCENKIKEKMEEAELLRTKLEEMDEIEKKLRAELENMQSRSSVNASQSLISEGWEEENKINNRAGFDADAEALKTTMLEKLDEKKKELSSMEDTVKALEKKWAAVQENALKQPSPAQREKTLDKQLHGLLQQLAVKQTQAEGLLEEIHPKEVELERLNAQWRQLQSNNSDVNNARNRFVRGSSDKVHGLSDYDGHQRLPYHSAGRTESQQRLMLLSPKNGQIATPMLSLKAQVSIIIQAHEIAYYHTSMHCFEI