AlfalfaGEDB | MS.gene82327

M. sativa cultivar XinJiangDaYe / MS.gene82327

KEGG: K14516
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82327.t1	XP_013468697.1	96.7	213	4	1	1	210	1	213	7.20E-106	393.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82327.t1	A0A3Q7I5Y9	59.9	197	61	6	15	203	2	188	1.6e-53	210.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82327.t1	A0A072VL39	96.7	213	4	1	1	210	1	213	5.2e-106	393.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene82327.t1	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050945	MS.gene82327	0.810641	1.04E-50	-1.69E-46
MS.gene053272	MS.gene82327	-0.813062	3.10E-51	-1.69E-46
MS.gene053931	MS.gene82327	0.812561	3.98E-51	-1.69E-46
MS.gene054142	MS.gene82327	0.804434	2.16E-49	-1.69E-46
MS.gene055339	MS.gene82327	0.803959	2.72E-49	-1.69E-46
MS.gene05985	MS.gene82327	-0.831782	1.37E-55	-1.69E-46
MS.gene060244	MS.gene82327	0.817356	3.44E-52	-1.69E-46
MS.gene060935	MS.gene82327	0.801565	8.48E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene021397	MS.gene82327	PPI
MS.gene067018	MS.gene82327	PPI
MS.gene31705	MS.gene82327	PPI
MS.gene32449	MS.gene82327	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82327.t1	MTR_1g074370	96.714	213	4	1	1	210	1	213	3.64e-150	416
MS.gene82327.t1	MTR_1g043350	62.136	206	66	3	8	202	6	210	1.19e-67	207
MS.gene82327.t1	MTR_1g070015	47.917	192	79	4	15	203	42	215	3.19e-52	167
MS.gene82327.t1	MTR_1g070000	48.731	197	73	5	15	204	42	217	4.30e-52	167
MS.gene82327.t1	MTR_1g069985	54.487	156	65	3	52	203	54	207	2.35e-50	162
MS.gene82327.t1	MTR_4g054740	52.071	169	65	5	47	199	67	235	3.49e-50	163
MS.gene82327.t1	MTR_1g070020	58.865	141	46	3	66	199	63	198	2.27e-48	157
MS.gene82327.t1	MTR_4g054860	57.042	142	45	4	74	199	132	273	3.93e-47	156
MS.gene82327.t1	MTR_1g069940	61.074	149	47	4	70	207	92	240	5.71e-47	155
MS.gene82327.t1	MTR_1g069945	58.025	162	54	4	52	199	76	237	8.81e-47	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82327.t1	AT3G23240	63.889	180	59	3	28	203	36	213	7.09e-73	220
MS.gene82327.t1	AT2G31230	53.005	183	53	3	52	202	61	242	3.49e-52	168
MS.gene82327.t1	AT1G06160	50.000	182	57	3	53	201	62	242	2.17e-38	133
MS.gene82327.t1	AT5G47220	50.000	130	41	3	28	133	48	177	2.41e-35	125
MS.gene82327.t1	AT4G17500	47.826	138	40	2	28	133	71	208	1.15e-34	124
MS.gene82327.t1	AT2G44840	48.739	119	48	2	28	133	34	152	4.12e-30	111
MS.gene82327.t1	AT5G43410	80.000	60	12	0	73	132	15	74	6.21e-30	108
MS.gene82327.t1	AT3G23230	71.875	64	18	0	69	132	16	79	5.90e-28	103
MS.gene82327.t1	AT5G47230	46.923	130	58	3	15	133	87	216	6.05e-28	107
MS.gene82327.t1	AT5G51190	69.841	63	19	0	70	132	69	131	8.74e-28	105

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Find 39 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGAAGTGGAAGAGTT+TGG	0.342337	1.3:-53234184	None:intergenic
AATGATATGAATTGTGACGA+TGG	0.680404	1.3:+53234574	MS.gene82327:CDS
AATGGAATGAGGGTGTGGTT+AGG	0.473471	1.3:+53234439	MS.gene82327:CDS
AGAAGTCGTACCGAGGTGTA+AGG	0.511464	1.3:+53234368	MS.gene82327:CDS
AGAGGAAACATTCTTTGAGA+AGG	0.505396	1.3:+53234632	MS.gene82327:CDS
AGATCTTGGTGCTGATTATT+TGG	0.227126	1.3:+53234723	MS.gene82327:CDS
AGGAAGGAGAAGTCGTACCG+AGG	0.711683	1.3:+53234361	MS.gene82327:CDS
AGGTGTAAGGAGAAGACCAT+GGG	0.586469	1.3:+53234381	MS.gene82327:CDS
AGTGGAAGAGTTTGGAATTG+AGG	0.469757	1.3:-53234176	None:intergenic
ATAAGAGATTCGACGAGAAA+TGG	0.407006	1.3:+53234421	MS.gene82327:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGATATGAATTGTGACGA+TGG	+	chr1.3:53234574-53234593	MS.gene82327:CDS	30.0%
ATAGTTGAATTCATAGGATG+AGG	-	chr1.3:53234221-53234240	None:intergenic	30.0%
TTCTGATGAAAAATCTGAAG+TGG	-	chr1.3:53234197-53234216	None:intergenic	30.0%
ATAAGAGATTCGACGAGAAA+TGG	+	chr1.3:53234421-53234440	MS.gene82327:CDS	35.0%
GATTCTCTAACAATCTCAAC+AGG	-	chr1.3:53234550-53234569	None:intergenic	35.0%
GGGAAGATAGTTGAATTCAT+AGG	-	chr1.3:53234227-53234246	None:intergenic	35.0%
TCTCAACAAAACTACAGTGA+AGG	+	chr1.3:53234306-53234325	MS.gene82327:CDS	35.0%
ATTCGACGAGAAATGGAATG+AGG	+	chr1.3:53234428-53234447	MS.gene82327:CDS	40.0%
GCTGTTGTGTTTGAAGATCT+TGG	+	chr1.3:53234709-53234728	MS.gene82327:CDS	40.0%
TATTGCAGAAGAACCTCTCA+TGG	-	chr1.3:53234518-53234537	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	53234160	53234792	53234160	ID=MS.gene82327
chr1.3	mRNA	53234160	53234792	53234160	ID=MS.gene82327.t1;Parent=MS.gene82327
chr1.3	exon	53234160	53234792	53234160	ID=MS.gene82327.t1.exon1;Parent=MS.gene82327.t1
chr1.3	CDS	53234160	53234792	53234160	ID=cds.MS.gene82327.t1;Parent=MS.gene82327.t1

Gene Sequence

>MS.gene82327

ATGGATTCAAGTTCAACCTCAATTCCAAACTCTTCCACTTCAGATTTTTCATCAGAATCCTCATCCTATGAATTCAACTATCTTCCCTTCAACGAGAACGATCCCGAAGAGATGCTTCTGTACGGCATGATCAACGACGCCAACAATCTCAACAAAACTACAGTGAAGGAAGAAGAAGTAAGTTCTGAAGAGAACGAACCGAGGAAGGAGAAGTCGTACCGAGGTGTAAGGAGAAGACCATGGGGAAAATTTGCAGCAGAGATAAGAGATTCGACGAGAAATGGAATGAGGGTGTGGTTAGGAACGTTTGATAGTGCAGAAGCAGCTGCTTTGGCTTATGATCAAGCTGCTTTTTCCATGAGAGGTTCTTCTGCAATACTCAATTTTCCTGTTGAGATTGTTAGAGAATCGCTTAATGATATGAATTGTGACGATGGTTCTGAAGATGGGTGTTCACCTGTTGTTGCTCTTAAGAGGAAACATTCTTTGAGAAGGAAAATTGGTTTCAAGAAAAACAAAGATAGGAGCAATAATAGTAGTGTTGATAATGCTGTTGTGTTTGAAGATCTTGGTGCTGATTATTTGGAACAATTGTTGATTTCATCTGATGAGTTTCCATGTCCTCCTCAGTGA

Protein sequence

>MS.gene82327.t1

MDSSSTSIPNSSTSDFSSESSSYEFNYLPFNENDPEEMLLYGMINDANNLNKTTVKEEEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVEIVRESLNDMNCDDGSEDGCSPVVALKRKHSLRRKIGFKKNKDRSNNSSVDNAVVFEDLGADYLEQLLISSDEFPCPPQ