Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82362.t1 | XP_003607789.2 | 95.4 | 390 | 16 | 1 | 1 | 388 | 1 | 390 | 2.10E-212 | 748 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82362.t1 | P53535 | 80.2 | 324 | 64 | 0 | 64 | 387 | 62 | 385 | 1.3e-154 | 547.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82362.t1 | G7JHG9 | 95.4 | 390 | 16 | 1 | 1 | 388 | 1 | 390 | 1.5e-212 | 748.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049681 | MS.gene82362 | 0.81187 | 5.64E-51 | -1.69E-46 |
MS.gene053836 | MS.gene82362 | 0.80922 | 2.11E-50 | -1.69E-46 |
MS.gene053971 | MS.gene82362 | 0.802923 | 4.46E-49 | -1.69E-46 |
MS.gene054012 | MS.gene82362 | 0.802171 | 6.37E-49 | -1.69E-46 |
MS.gene054942 | MS.gene82362 | 0.802007 | 6.88E-49 | -1.69E-46 |
MS.gene055428 | MS.gene82362 | 0.803505 | 3.38E-49 | -1.69E-46 |
MS.gene05811 | MS.gene82362 | 0.802 | 6.90E-49 | -1.69E-46 |
MS.gene05907 | MS.gene82362 | 0.827618 | 1.42E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82362.t1 | MTR_4g082950 | 95.385 | 390 | 16 | 1 | 1 | 388 | 1 | 390 | 0.0 | 770 |
MS.gene82362.t1 | MTR_0288s0040 | 77.019 | 322 | 73 | 1 | 67 | 387 | 44 | 365 | 0.0 | 540 |
MS.gene82362.t1 | MTR_3g462340 | 60.000 | 315 | 126 | 0 | 73 | 387 | 20 | 334 | 7.39e-135 | 406 |
MS.gene82362.t1 | MTR_2g014460 | 50.482 | 311 | 147 | 3 | 80 | 387 | 183 | 489 | 5.08e-97 | 310 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82362.t1 | AT3G29320 | 69.034 | 352 | 102 | 2 | 41 | 387 | 50 | 399 | 3.25e-178 | 521 |
MS.gene82362.t1 | AT3G46970 | 57.440 | 336 | 138 | 2 | 54 | 387 | 3 | 335 | 3.64e-134 | 404 |
Find 108 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGCTTTCTAATTGCTCTTC+TGG | 0.206585 | 4.2:+26751609 | None:intergenic |
TTCTATGGAGAAGTTATTTC+AGG | 0.216727 | 4.2:-26749195 | MS.gene82362:CDS |
GATCAGGAATGACGGTAAAT+TGG | 0.232719 | 4.2:-26748564 | MS.gene82362:CDS |
GATTTGAAGGCTTTCAATAC+TGG | 0.245062 | 4.2:-26749036 | MS.gene82362:CDS |
GTGATTCCCTTATCATAAAT+TGG | 0.247012 | 4.2:-26750391 | MS.gene82362:CDS |
TCTTATCCAGTTAGATTCTA+TGG | 0.254682 | 4.2:-26749210 | MS.gene82362:CDS |
ATTTGTACCACCACTTTATC+TGG | 0.266367 | 4.2:+26748532 | None:intergenic |
AATTACCCTGCATGGGGATA+TGG | 0.274456 | 4.2:-26749519 | MS.gene82362:CDS |
GCAAGCTTATTACATGTCTA+TGG | 0.286957 | 4.2:-26750330 | MS.gene82362:CDS |
TTTAGAGGATGTGGCTAATC+AGG | 0.301609 | 4.2:-26750125 | MS.gene82362:intron |
TGCATTCCAATTTATGATAA+GGG | 0.315129 | 4.2:+26750385 | None:intergenic |
GGACCACAATCGCAAGTTTA+TGG | 0.317000 | 4.2:+26749083 | None:intergenic |
TGCTGAGGCTCTGAGGAAAC+TGG | 0.320911 | 4.2:-26750155 | MS.gene82362:CDS |
CCCATTCCAAATCAAACATT+TGG | 0.324417 | 4.2:-26751681 | MS.gene82362:CDS |
AACTAAAGAATTTGATTTGA+AGG | 0.326464 | 4.2:-26749049 | MS.gene82362:CDS |
GACTGGAGGAGAAAGTATTT+TGG | 0.328200 | 4.2:-26749151 | MS.gene82362:CDS |
TCGCTGCCAAATGTTTGATT+TGG | 0.348700 | 4.2:+26751675 | None:intergenic |
TTGCATTCCAATTTATGATA+AGG | 0.352440 | 4.2:+26750384 | None:intergenic |
AGTTGCAAAGTAAGCCTTAC+TGG | 0.354966 | 4.2:+26750427 | None:intergenic |
AGGGCATTGTTAAATGCAAT+TGG | 0.355293 | 4.2:-26750202 | MS.gene82362:CDS |
TTCTTTAGTTGAAACTTTAG+TGG | 0.365317 | 4.2:+26749062 | None:intergenic |
CAGTTCCGCTGCTTTGTCGC+TGG | 0.365462 | 4.2:+26751570 | None:intergenic |
CCTTCTATTGATTCATCCCC+AGG | 0.374631 | 4.2:+26748664 | None:intergenic |
AGGAGGAAGTTGCTGAAAAC+TGG | 0.381174 | 4.2:-26749446 | MS.gene82362:CDS |
GGCAGCGACAAAACAACATT+TGG | 0.381599 | 4.2:-26751660 | MS.gene82362:CDS |
ACTTCTCCATAGAATCTAAC+TGG | 0.381745 | 4.2:+26749204 | None:intergenic |
GAAACTGGGTTACAATTTAG+AGG | 0.387483 | 4.2:-26750140 | MS.gene82362:CDS |
CCATTCCCAAGGGCTGCATC+TGG | 0.392098 | 4.2:+26749591 | None:intergenic |
TTCTTGCTTTCTAGACTCCT+TGG | 0.404594 | 4.2:-26749550 | MS.gene82362:CDS |
ATCAGGAATGACGGTAAATT+GGG | 0.418725 | 4.2:-26748563 | MS.gene82362:CDS |
GTCCATTGCTTAGCTCCATC+TGG | 0.426769 | 4.2:+26749171 | None:intergenic |
CTTCATGACAGCGTATGCTT+TGG | 0.427119 | 4.2:+26749005 | None:intergenic |
CCAAATGTTTGATTTGGAAT+GGG | 0.448607 | 4.2:+26751681 | None:intergenic |
ATTTGAAGGCTTTCAATACT+GGG | 0.449329 | 4.2:-26749035 | MS.gene82362:CDS |
ACGTATAACGAAGGACGGTC+AGG | 0.458652 | 4.2:-26749466 | MS.gene82362:CDS |
GCCCTTGGGAATGGAGGATT+AGG | 0.460169 | 4.2:-26749582 | MS.gene82362:CDS |
ATCGTTTCTCTGAATTTCCC+AGG | 0.466281 | 4.2:+26749236 | None:intergenic |
TTCCTCAGAGCCTCAGCATA+AGG | 0.466595 | 4.2:+26750160 | None:intergenic |
CAGGAGCCAGATGCAGCCCT+TGG | 0.468994 | 4.2:-26749597 | MS.gene82362:CDS |
CCAGATGCAGCCCTTGGGAA+TGG | 0.470381 | 4.2:-26749591 | MS.gene82362:CDS |
GCCAAATGTTTGATTTGGAA+TGG | 0.475175 | 4.2:+26751680 | None:intergenic |
TTACTGGGCTCAAATTTCTC+AGG | 0.477856 | 4.2:+26750443 | None:intergenic |
CCTGGGGATGAATCAATAGA+AGG | 0.480958 | 4.2:-26748664 | MS.gene82362:CDS |
GCACGCTTTGAAAAGAGATC+AGG | 0.482626 | 4.2:-26748580 | MS.gene82362:CDS |
GCTTATGATGTTCCAATACC+TGG | 0.487169 | 4.2:-26749123 | MS.gene82362:CDS |
GGGCATTGTTAAATGCAATT+GGG | 0.488583 | 4.2:-26750201 | MS.gene82362:CDS |
GGGTTACAATTTAGAGGATG+TGG | 0.490297 | 4.2:-26750134 | MS.gene82362:CDS |
ATTGGGAATTTACAACTCTC+AGG | 0.491640 | 4.2:-26750184 | MS.gene82362:CDS |
TGAGAAATTTGAGCCCAGTA+AGG | 0.492541 | 4.2:-26750441 | MS.gene82362:CDS |
CATGTCTATGGAGTATCTAC+AGG | 0.498390 | 4.2:-26750318 | MS.gene82362:intron |
TCTGTTACATTCTATACCCT+GGG | 0.504284 | 4.2:-26748681 | MS.gene82362:CDS |
GAACTGAAAGAACGACTCAT+TGG | 0.504413 | 4.2:-26751553 | MS.gene82362:CDS |
GGGGATATGGACTTAGATAC+AGG | 0.507764 | 4.2:-26749506 | MS.gene82362:CDS |
CAAAGCGTGCAATGATATCC+TGG | 0.512626 | 4.2:+26748593 | None:intergenic |
AACACTGAATTACCCTGCAT+GGG | 0.518781 | 4.2:-26749526 | MS.gene82362:CDS |
ATTTATAGATGGGAAATCCC+TGG | 0.520518 | 4.2:-26749254 | MS.gene82362:intron |
TCTATGGAGAAGTTATTTCA+GGG | 0.524340 | 4.2:-26749194 | MS.gene82362:CDS |
ATCTGTTACATTCTATACCC+TGG | 0.525611 | 4.2:-26748682 | MS.gene82362:CDS |
CAACACTGAATTACCCTGCA+TGG | 0.525876 | 4.2:-26749527 | MS.gene82362:CDS |
TACCATTCTCAACAACCTGC+AGG | 0.529812 | 4.2:-26751726 | MS.gene82362:CDS |
TACCACCACTTTATCTGGAA+GGG | 0.530834 | 4.2:+26748537 | None:intergenic |
AGGAGCCAGATGCAGCCCTT+GGG | 0.536797 | 4.2:-26749596 | MS.gene82362:CDS |
CCACCATAAACTTGCGATTG+TGG | 0.538883 | 4.2:-26749086 | MS.gene82362:CDS |
CTAAGTCCATATCCCCATGC+AGG | 0.541539 | 4.2:+26749513 | None:intergenic |
GGCCTAATCCTCCATTCCCA+AGG | 0.543436 | 4.2:+26749580 | None:intergenic |
TGCCTGCAGGTTGTTGAGAA+TGG | 0.544681 | 4.2:+26751724 | None:intergenic |
CTTCTATTGATTCATCCCCA+GGG | 0.545352 | 4.2:+26748665 | None:intergenic |
GATGGAGCTAAGCAATGGAC+TGG | 0.553513 | 4.2:-26749168 | MS.gene82362:CDS |
GAAGTTATTTCAGGGCCAGA+TGG | 0.555318 | 4.2:-26749186 | MS.gene82362:CDS |
ATTATGCTCAGCCTCTCTCC+AGG | 0.555876 | 4.2:-26748611 | MS.gene82362:CDS |
TTTATAGATGGGAAATCCCT+GGG | 0.557702 | 4.2:-26749253 | MS.gene82362:intron |
GTACCACCACTTTATCTGGA+AGG | 0.562027 | 4.2:+26748536 | None:intergenic |
GGACTCCCTTCCAGATAAAG+TGG | 0.565184 | 4.2:-26748542 | MS.gene82362:CDS |
TTGGGAATGGAGGATTAGGC+CGG | 0.569055 | 4.2:-26749578 | MS.gene82362:CDS |
TGCAACGAATTCATTTGAAG+TGG | 0.569514 | 4.2:+26750526 | None:intergenic |
AATTTATGATAAGGGAATCA+CGG | 0.571565 | 4.2:+26750393 | None:intergenic |
CTAGAAAGCAAGAAGCAAGC+CGG | 0.574391 | 4.2:+26749559 | None:intergenic |
GATGCAGCCCTTGGGAATGG+AGG | 0.575620 | 4.2:-26749588 | MS.gene82362:CDS |
GGCCAGATGGAGCTAAGCAA+TGG | 0.578954 | 4.2:-26749173 | MS.gene82362:CDS |
GTTGCAAAGTAAGCCTTACT+GGG | 0.579338 | 4.2:+26750428 | None:intergenic |
TATGGACTTAGATACAGGTA+TGG | 0.584953 | 4.2:-26749501 | MS.gene82362:CDS |
GCTGAGGCTCTGAGGAAACT+GGG | 0.590579 | 4.2:-26750154 | MS.gene82362:CDS |
TCGTTTCTCTGAATTTCCCA+GGG | 0.593399 | 4.2:+26749237 | None:intergenic |
CAACATATGAATATTATGAG+AGG | 0.596709 | 4.2:-26750364 | MS.gene82362:CDS |
GCCTAATCCTCCATTCCCAA+GGG | 0.606925 | 4.2:+26749581 | None:intergenic |
AGGGTAATTCAGTGTTGCCA+AGG | 0.609943 | 4.2:+26749533 | None:intergenic |
TAAGTCCATATCCCCATGCA+GGG | 0.610745 | 4.2:+26749514 | None:intergenic |
GTCCTTATGCTGAGGCTCTG+AGG | 0.613621 | 4.2:-26750162 | MS.gene82362:CDS |
TGAAAAGAGATCAGGAATGA+CGG | 0.617393 | 4.2:-26748572 | MS.gene82362:CDS |
TATAACGAAGGACGGTCAGG+AGG | 0.619104 | 4.2:-26749463 | MS.gene82362:CDS |
TGTCATGAAGAATGCAGAGA+AGG | 0.620102 | 4.2:-26748992 | MS.gene82362:intron |
AGGTGAGCTTGAATGCCTGC+AGG | 0.620576 | 4.2:+26751711 | None:intergenic |
AACATATGAATATTATGAGA+GGG | 0.623422 | 4.2:-26750363 | MS.gene82362:CDS |
GATTTGGAATGGGAATGTAA+AGG | 0.624865 | 4.2:+26751691 | None:intergenic |
GGAGCTAAGCAATGGACTGG+AGG | 0.628655 | 4.2:-26749165 | MS.gene82362:CDS |
TGCAATGATATCCTGGAGAG+AGG | 0.629144 | 4.2:+26748600 | None:intergenic |
ATTCAAACAACGTATAACGA+AGG | 0.632464 | 4.2:-26749475 | MS.gene82362:CDS |
TTTGAAGGCTTTCAATACTG+GGG | 0.639183 | 4.2:-26749034 | MS.gene82362:CDS |
CCACAATCGCAAGTTTATGG+TGG | 0.645345 | 4.2:+26749086 | None:intergenic |
TATTGGAACATCATAAGCAA+CGG | 0.649331 | 4.2:+26749128 | None:intergenic |
ACTCTCAGGTCCTTATGCTG+AGG | 0.656696 | 4.2:-26750170 | MS.gene82362:CDS |
AAACAACGTATAACGAAGGA+CGG | 0.658557 | 4.2:-26749471 | MS.gene82362:CDS |
TGTTGCCAGCGACAAAGCAG+CGG | 0.667849 | 4.2:-26751575 | MS.gene82362:CDS |
ACACTGAATTACCCTGCATG+GGG | 0.680238 | 4.2:-26749525 | MS.gene82362:CDS |
CTCCCTTCCAGATAAAGTGG+TGG | 0.681896 | 4.2:-26748539 | None:intergenic |
AGTTGCTGAAAACTGGCTTG+AGG | 0.695370 | 4.2:-26749439 | MS.gene82362:intron |
AAAGAACGACTCATTGGACA+AGG | 0.698404 | 4.2:-26751547 | MS.gene82362:intron |
CTGTTACATTCTATACCCTG+GGG | 0.720986 | 4.2:-26748680 | MS.gene82362:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATACATTGTACTATAATATT+TGG | + | chr4.2:26750355-26750374 | None:intergenic | 15.0% |
!! | GATATAATACTAAAAAATCT+TGG | + | chr4.2:26749654-26749673 | None:intergenic | 15.0% |
!! | TACATTCTAATATATTATTC+AGG | - | chr4.2:26748805-26748824 | MS.gene82362:intron | 15.0% |
!!! | ACATTGAAACTTTAAAAATA+TGG | + | chr4.2:26749280-26749299 | None:intergenic | 15.0% |
!!! | TGCTTTTTTTTTTTTTTTGA+AGG | + | chr4.2:26750491-26750510 | None:intergenic | 15.0% |
!! | AAAAAAGTGAGAATATTGTT+AGG | - | chr4.2:26750450-26750469 | MS.gene82362:CDS | 20.0% |
!! | AACATATGAATATTATGAGA+GGG | - | chr4.2:26749913-26749932 | MS.gene82362:intron | 20.0% |
!! | AATATCTTTCCATGTAAATT+TGG | - | chr4.2:26749102-26749121 | MS.gene82362:CDS | 20.0% |
!! | AGGAAACTTGATTTATATAA+AGG | + | chr4.2:26749431-26749450 | None:intergenic | 20.0% |
!! | ATAAATCTAACATAAAACCA+TGG | + | chr4.2:26748968-26748987 | None:intergenic | 20.0% |
!! | ATATCTCAGATATAAATCAT+CGG | - | chr4.2:26751473-26751492 | MS.gene82362:intron | 20.0% |
!! | ATTGTTACATGTTTGTTTAA+TGG | - | chr4.2:26750427-26750446 | MS.gene82362:CDS | 20.0% |
!! | CCAATAAGGAATTAATATTT+AGG | + | chr4.2:26749714-26749733 | None:intergenic | 20.0% |
!! | CCTAAATATTAATTCCTTAT+TGG | - | chr4.2:26749711-26749730 | MS.gene82362:intron | 20.0% |
!! | GAAATAAAGATTAGTGATTA+TGG | - | chr4.2:26749145-26749164 | MS.gene82362:CDS | 20.0% |
!! | GAAATGTAATAACTAAATAC+GGG | - | chr4.2:26749236-26749255 | MS.gene82362:CDS | 20.0% |
!! | GGAAATGTAATAACTAAATA+CGG | - | chr4.2:26749235-26749254 | MS.gene82362:CDS | 20.0% |
!! | TATATTAGAATGTAAAGAAG+TGG | + | chr4.2:26748799-26748818 | None:intergenic | 20.0% |
!! | TTATTAAATCTGAGCTAATA+TGG | - | chr4.2:26749180-26749199 | MS.gene82362:CDS | 20.0% |
!!! | AACTAAAGAATTTGATTTGA+AGG | - | chr4.2:26751227-26751246 | MS.gene82362:intron | 20.0% |
!!! | ATGATTTATATCTGAGATAT+AGG | + | chr4.2:26751473-26751492 | None:intergenic | 20.0% |
!!! | GAGAAGTTTTTTTTCATTTA+TGG | - | chr4.2:26751495-26751514 | MS.gene82362:intron | 20.0% |
!!! | TTTTAATGAATTTCGTTTGA+AGG | - | chr4.2:26749313-26749332 | MS.gene82362:intron | 20.0% |
!!! | TTTTTTTTCTTCTGCAAATA+TGG | - | chr4.2:26749687-26749706 | MS.gene82362:intron | 20.0% |
! | AAAATTGTCAATCTATTACG+AGG | + | chr4.2:26749481-26749500 | None:intergenic | 25.0% |
! | AAACAAACATGTAACAATCT+TGG | + | chr4.2:26750425-26750444 | None:intergenic | 25.0% |
! | AATTTATGATAAGGGAATCA+CGG | + | chr4.2:26749886-26749905 | None:intergenic | 25.0% |
! | CAACATATGAATATTATGAG+AGG | - | chr4.2:26749912-26749931 | MS.gene82362:intron | 25.0% |
! | CGAATGAAATGATAGTAATA+TGG | - | chr4.2:26750600-26750619 | MS.gene82362:intron | 25.0% |
! | TAACAATCTTGGTTCAAATA+TGG | + | chr4.2:26750414-26750433 | None:intergenic | 25.0% |
! | TAGTACAATGTATCTCTTAT+AGG | - | chr4.2:26750362-26750381 | MS.gene82362:CDS | 25.0% |
! | TCCATGTAAATTTGGATTAA+TGG | - | chr4.2:26749110-26749129 | MS.gene82362:CDS | 25.0% |
! | TCCATTAATCCAAATTTACA+TGG | + | chr4.2:26749114-26749133 | None:intergenic | 25.0% |
! | TGCATTCCAATTTATGATAA+GGG | + | chr4.2:26749894-26749913 | None:intergenic | 25.0% |
! | TTATATAAAGGCAAGTCTTA+GGG | + | chr4.2:26749419-26749438 | None:intergenic | 25.0% |
! | TTCTATTGACAACAAAGATT+AGG | - | chr4.2:26750387-26750406 | MS.gene82362:CDS | 25.0% |
! | TTCTTTAGTTGAAACTTTAG+TGG | + | chr4.2:26751217-26751236 | None:intergenic | 25.0% |
! | TTGCATTCCAATTTATGATA+AGG | + | chr4.2:26749895-26749914 | None:intergenic | 25.0% |
! | TTTAGATAGTAGCTTTCTTA+AGG | - | chr4.2:26749029-26749048 | MS.gene82362:CDS | 25.0% |
! | TTTATATAAAGGCAAGTCTT+AGG | + | chr4.2:26749420-26749439 | None:intergenic | 25.0% |
!! | CAGATAACAATTTTGTGAAA+TGG | + | chr4.2:26750318-26750337 | None:intergenic | 25.0% |
!! | GTTTTTCTTGTAGTTTTTCT+TGG | + | chr4.2:26750568-26750587 | None:intergenic | 25.0% |
AATTGTTATCTGTCATCTTG+AGG | - | chr4.2:26750326-26750345 | MS.gene82362:CDS | 30.0% | |
AGTATCTACAGGTTCATATT+GGG | - | chr4.2:26749969-26749988 | MS.gene82362:intron | 30.0% | |
AGTGTTCTCTTGAAGTTATA+AGG | - | chr4.2:26749575-26749594 | MS.gene82362:CDS | 30.0% | |
ATTAGTTCCATTACGATTCA+AGG | + | chr4.2:26749451-26749470 | None:intergenic | 30.0% | |
ATTCAAACAACGTATAACGA+AGG | - | chr4.2:26750801-26750820 | MS.gene82362:intron | 30.0% | |
ATTTGAAGGCTTTCAATACT+GGG | - | chr4.2:26751241-26751260 | MS.gene82362:intron | 30.0% | |
GGCAGCAATAATATGAAAAT+TGG | + | chr4.2:26750902-26750921 | None:intergenic | 30.0% | |
GTGATTCCCTTATCATAAAT+TGG | - | chr4.2:26749885-26749904 | MS.gene82362:intron | 30.0% | |
TATATAAAGGCAAGTCTTAG+GGG | + | chr4.2:26749418-26749437 | None:intergenic | 30.0% | |
TATTGGAACATCATAAGCAA+CGG | + | chr4.2:26751151-26751170 | None:intergenic | 30.0% | |
TCACAATTGGGAAAAAATGT+AGG | + | chr4.2:26750049-26750068 | None:intergenic | 30.0% | |
TCTTATCCAGTTAGATTCTA+TGG | - | chr4.2:26751066-26751085 | MS.gene82362:intron | 30.0% | |
TGACGTGTCTATTTATAGAT+GGG | - | chr4.2:26751012-26751031 | MS.gene82362:intron | 30.0% | |
! | AGTTTGATGGAAATTTTGCT+GGG | - | chr4.2:26748887-26748906 | MS.gene82362:intron | 30.0% |
! | ATTTTGTGAAATGGACAGAA+AGG | + | chr4.2:26750309-26750328 | None:intergenic | 30.0% |
! | CAATTTGAAGCAAGAGAATA+AGG | + | chr4.2:26751442-26751461 | None:intergenic | 30.0% |
! | CATGTAACAATAAGTTGAAC+TGG | - | chr4.2:26750276-26750295 | MS.gene82362:intron | 30.0% |
! | CTTTCTTCTATCACTCTTTT+TGG | - | chr4.2:26750952-26750971 | MS.gene82362:intron | 30.0% |
! | GAAATTTTGCTGGGTTTAAT+TGG | - | chr4.2:26748896-26748915 | MS.gene82362:intron | 30.0% |
! | TCTATGGAGAAGTTATTTCA+GGG | - | chr4.2:26751082-26751101 | MS.gene82362:intron | 30.0% |
! | TTCTATGGAGAAGTTATTTC+AGG | - | chr4.2:26751081-26751100 | MS.gene82362:intron | 30.0% |
! | TTTTGTGAAATGGACAGAAA+GGG | + | chr4.2:26750308-26750327 | None:intergenic | 30.0% |
!! | CCAAATGTTTGATTTGGAAT+GGG | + | chr4.2:26748598-26748617 | None:intergenic | 30.0% |
!! | TCTTCTTCAAAAGTACTTTC+TGG | - | chr4.2:26751360-26751379 | MS.gene82362:intron | 30.0% |
!! | TTTATCCCTTTGAAGTTTGT+TGG | - | chr4.2:26749211-26749230 | MS.gene82362:CDS | 30.0% |
!!! | ACATTTTTTCCCAATTGTGA+AGG | - | chr4.2:26750049-26750068 | MS.gene82362:intron | 30.0% |
!!! | CATTTTTTCCCAATTGTGAA+GGG | - | chr4.2:26750050-26750069 | MS.gene82362:intron | 30.0% |
!!! | TTACTAGTGCATTTTTTGGA+AGG | - | chr4.2:26748919-26748938 | MS.gene82362:intron | 30.0% |
!!! | TTGGTTACTAGTGCATTTTT+TGG | - | chr4.2:26748915-26748934 | MS.gene82362:intron | 30.0% |
AAACAACGTATAACGAAGGA+CGG | - | chr4.2:26750805-26750824 | MS.gene82362:intron | 35.0% | |
AAATGACCCGTGTTTCATAA+AGG | + | chr4.2:26749998-26750017 | None:intergenic | 35.0% | |
ACTTATTGTTACATGCTACC+AGG | + | chr4.2:26750271-26750290 | None:intergenic | 35.0% | |
ACTTCTCCATAGAATCTAAC+TGG | + | chr4.2:26751075-26751094 | None:intergenic | 35.0% | |
ATACATTCTAAGCTCAGTAG+TGG | + | chr4.2:26751400-26751419 | None:intergenic | 35.0% | |
ATCAAACTGAAACTCTTGCA+AGG | + | chr4.2:26748875-26748894 | None:intergenic | 35.0% | |
ATCAGGAATGACGGTAAATT+GGG | - | chr4.2:26751713-26751732 | MS.gene82362:CDS | 35.0% | |
ATCGTAACTTATATTGCCAC+AGG | - | chr4.2:26749066-26749085 | MS.gene82362:CDS | 35.0% | |
ATCTGTTACATTCTATACCC+TGG | - | chr4.2:26751594-26751613 | MS.gene82362:CDS | 35.0% | |
ATTGGGAATTTACAACTCTC+AGG | - | chr4.2:26750092-26750111 | MS.gene82362:intron | 35.0% | |
ATTTATAGATGGGAAATCCC+TGG | - | chr4.2:26751022-26751041 | MS.gene82362:intron | 35.0% | |
CAAACTCACATACAATTCAC+AGG | - | chr4.2:26750660-26750679 | MS.gene82362:intron | 35.0% | |
CAACAAAGGAGAACAATAGT+AGG | + | chr4.2:26750183-26750202 | None:intergenic | 35.0% | |
CAAGTTTCCTTGAATCGTAA+TGG | - | chr4.2:26749441-26749460 | MS.gene82362:CDS | 35.0% | |
CCCATTCCAAATCAAACATT+TGG | - | chr4.2:26748595-26748614 | MS.gene82362:CDS | 35.0% | |
CTGACGTGTCTATTTATAGA+TGG | - | chr4.2:26751011-26751030 | MS.gene82362:intron | 35.0% | |
GAAACTGGGTTACAATTTAG+AGG | - | chr4.2:26750136-26750155 | MS.gene82362:CDS | 35.0% | |
GAGTATCTACAGGTTCATAT+TGG | - | chr4.2:26749968-26749987 | MS.gene82362:intron | 35.0% | |
GATTTGAAGGCTTTCAATAC+TGG | - | chr4.2:26751240-26751259 | MS.gene82362:intron | 35.0% | |
GCAAGCTTATTACATGTCTA+TGG | - | chr4.2:26749946-26749965 | MS.gene82362:intron | 35.0% | |
GGATTAATGGAATCTAGTTG+AGG | - | chr4.2:26749123-26749142 | MS.gene82362:CDS | 35.0% | |
GTAAAATGTCTTCATTCGTG+TGG | - | chr4.2:26750524-26750543 | MS.gene82362:CDS | 35.0% | |
GTGTGGAAACATACTAATGA+AGG | - | chr4.2:26750541-26750560 | MS.gene82362:intron | 35.0% | |
TAACTTATATTGCCACAGGA+AGG | - | chr4.2:26749070-26749089 | MS.gene82362:CDS | 35.0% | |
TATGGACTTAGATACAGGTA+TGG | - | chr4.2:26750775-26750794 | MS.gene82362:intron | 35.0% | |
TCAATGCACATTATAGACGT+TGG | - | chr4.2:26749002-26749021 | MS.gene82362:CDS | 35.0% | |
TCTCTTGCTTCAAATTGTAG+TGG | - | chr4.2:26751445-26751464 | MS.gene82362:intron | 35.0% | |
TCTGTTACATTCTATACCCT+GGG | - | chr4.2:26751595-26751614 | MS.gene82362:CDS | 35.0% | |
TGAAAAGAGATCAGGAATGA+CGG | - | chr4.2:26751704-26751723 | MS.gene82362:CDS | 35.0% | |
TGCAACGAATTCATTTGAAG+TGG | + | chr4.2:26749753-26749772 | None:intergenic | 35.0% | |
TGGGTTTCCTTTATGAAACA+CGG | - | chr4.2:26749988-26750007 | MS.gene82362:intron | 35.0% | |
TGTTTATCAAATAGTCCTCC+TGG | - | chr4.2:26750250-26750269 | MS.gene82362:intron | 35.0% | |
TTCCTCCAACAAACTTCAAA+GGG | + | chr4.2:26749219-26749238 | None:intergenic | 35.0% | |
TTGCAAGAGTTTCAGTTTGA+TGG | - | chr4.2:26748874-26748893 | MS.gene82362:intron | 35.0% | |
TTGGAAGGTTCTCAAAAGTA+AGG | - | chr4.2:26748934-26748953 | MS.gene82362:intron | 35.0% | |
TTTATAGATGGGAAATCCCT+GGG | - | chr4.2:26751023-26751042 | MS.gene82362:intron | 35.0% | |
TTTCCTCCAACAAACTTCAA+AGG | + | chr4.2:26749220-26749239 | None:intergenic | 35.0% | |
TTTCTCAGGAGAAAAAGATG+TGG | + | chr4.2:26749822-26749841 | None:intergenic | 35.0% | |
TTTCTTAAGGTGTGCAGTAT+AGG | - | chr4.2:26749042-26749061 | MS.gene82362:CDS | 35.0% | |
TTTGAAGGCTTTCAATACTG+GGG | - | chr4.2:26751242-26751261 | MS.gene82362:intron | 35.0% | |
! | CAGTTTGATGGAAATTTTGC+TGG | - | chr4.2:26748886-26748905 | MS.gene82362:intron | 35.0% |
! | GATTTGGAATGGGAATGTAA+AGG | + | chr4.2:26748588-26748607 | None:intergenic | 35.0% |
! | GGGCATTGTTAAATGCAATT+GGG | - | chr4.2:26750075-26750094 | MS.gene82362:intron | 35.0% |
!! | AGGGCATTGTTAAATGCAAT+TGG | - | chr4.2:26750074-26750093 | MS.gene82362:intron | 35.0% |
!! | ATTGTTCTCCTTTGTTGTTG+CGG | - | chr4.2:26750186-26750205 | MS.gene82362:CDS | 35.0% |
!! | GCCAAATGTTTGATTTGGAA+TGG | + | chr4.2:26748599-26748618 | None:intergenic | 35.0% |
!!! | CTAGTTTTGTATCCAGGTAT+TGG | + | chr4.2:26751168-26751187 | None:intergenic | 35.0% |
AAAGAACGACTCATTGGACA+AGG | - | chr4.2:26748729-26748748 | MS.gene82362:intron | 40.0% | |
AACACTGAATTACCCTGCAT+GGG | - | chr4.2:26750750-26750769 | MS.gene82362:intron | 40.0% | |
AAGAATGCAGAGAAGGTTTG+TGG | - | chr4.2:26751291-26751310 | MS.gene82362:intron | 40.0% | |
AAGACACTGAACTTAGATGC+AGG | + | chr4.2:26751344-26751363 | None:intergenic | 40.0% | |
AGGTTCTCAAAAGTAAGGAG+TGG | - | chr4.2:26748939-26748958 | MS.gene82362:intron | 40.0% | |
AGTTGCAAAGTAAGCCTTAC+TGG | + | chr4.2:26749852-26749871 | None:intergenic | 40.0% | |
ATCGTTTCTCTGAATTTCCC+AGG | + | chr4.2:26751043-26751062 | None:intergenic | 40.0% | |
ATTAAGTGACATCCTTCCTG+TGG | + | chr4.2:26749085-26749104 | None:intergenic | 40.0% | |
CATATTATTGCTGCCTATGC+AGG | - | chr4.2:26750907-26750926 | MS.gene82362:intron | 40.0% | |
CCTGCAAGTGTTAACCAATA+AGG | + | chr4.2:26749728-26749747 | None:intergenic | 40.0% | |
CTGTTACATTCTATACCCTG+GGG | - | chr4.2:26751596-26751615 | MS.gene82362:CDS | 40.0% | |
GAACTGAAAGAACGACTCAT+TGG | - | chr4.2:26748723-26748742 | MS.gene82362:intron | 40.0% | |
GAGCTTTCTAATTGCTCTTC+TGG | + | chr4.2:26748670-26748689 | None:intergenic | 40.0% | |
GATCAGGAATGACGGTAAAT+TGG | - | chr4.2:26751712-26751731 | MS.gene82362:CDS | 40.0% | |
GCTTATGATGTTCCAATACC+TGG | - | chr4.2:26751153-26751172 | MS.gene82362:intron | 40.0% | |
GGGTTACAATTTAGAGGATG+TGG | - | chr4.2:26750142-26750161 | MS.gene82362:CDS | 40.0% | |
GGGTTTCCTTTATGAAACAC+GGG | - | chr4.2:26749989-26750008 | MS.gene82362:intron | 40.0% | |
GGTTCTCAAAAGTAAGGAGT+GGG | - | chr4.2:26748940-26748959 | MS.gene82362:intron | 40.0% | |
GTAAGGACCACAAAGAAACA+AGG | + | chr4.2:26751320-26751339 | None:intergenic | 40.0% | |
GTTGCAAAGTAAGCCTTACT+GGG | + | chr4.2:26749851-26749870 | None:intergenic | 40.0% | |
TATTGTTACATGCTACCAGG+AGG | + | chr4.2:26750268-26750287 | None:intergenic | 40.0% | |
TCGCTGCCAAATGTTTGATT+TGG | + | chr4.2:26748604-26748623 | None:intergenic | 40.0% | |
TCGTTTCTCTGAATTTCCCA+GGG | + | chr4.2:26751042-26751061 | None:intergenic | 40.0% | |
TGAACTTAGATGCAGGTGTA+AGG | + | chr4.2:26751337-26751356 | None:intergenic | 40.0% | |
TGAGAAATTTGAGCCCAGTA+AGG | - | chr4.2:26749835-26749854 | MS.gene82362:intron | 40.0% | |
TGTCATGAAGAATGCAGAGA+AGG | - | chr4.2:26751284-26751303 | MS.gene82362:intron | 40.0% | |
TTACTGGGCTCAAATTTCTC+AGG | + | chr4.2:26749836-26749855 | None:intergenic | 40.0% | |
TTCTTGCTTTCTAGACTCCT+TGG | - | chr4.2:26750726-26750745 | MS.gene82362:intron | 40.0% | |
TTTAGAGGATGTGGCTAATC+AGG | - | chr4.2:26750151-26750170 | MS.gene82362:CDS | 40.0% | |
TTTCCCAATTGTGAAGGGTA+GGG | - | chr4.2:26750055-26750074 | MS.gene82362:intron | 40.0% | |
! | CATGTCTATGGAGTATCTAC+AGG | - | chr4.2:26749958-26749977 | MS.gene82362:intron | 40.0% |
! | CCTTATTGGTTAACACTTGC+AGG | - | chr4.2:26749725-26749744 | MS.gene82362:intron | 40.0% |
! | TTTTCCCAATTGTGAAGGGT+AGG | - | chr4.2:26750054-26750073 | MS.gene82362:intron | 40.0% |
!! | ATCCCTTTGAAGTTTGTTGG+AGG | - | chr4.2:26749214-26749233 | MS.gene82362:CDS | 40.0% |
!! | CTTCTATTGATTCATCCCCA+GGG | + | chr4.2:26751614-26751633 | None:intergenic | 40.0% |
!!! | GACTGGAGGAGAAAGTATTT+TGG | - | chr4.2:26751125-26751144 | MS.gene82362:intron | 40.0% |
!!! | GTGGTTCTAGTTTTGTATCC+AGG | + | chr4.2:26751174-26751193 | None:intergenic | 40.0% |
AAAGTAAGGAGTGGGAACCA+TGG | - | chr4.2:26748948-26748967 | MS.gene82362:intron | 45.0% | |
AATGCCCTACCCTTCACAAT+TGG | + | chr4.2:26750062-26750081 | None:intergenic | 45.0% | |
AATTACCCTGCATGGGGATA+TGG | - | chr4.2:26750757-26750776 | MS.gene82362:intron | 45.0% | |
ACACTGAATTACCCTGCATG+GGG | - | chr4.2:26750751-26750770 | MS.gene82362:intron | 45.0% | |
AGGAGGAAGTTGCTGAAAAC+TGG | - | chr4.2:26750830-26750849 | MS.gene82362:intron | 45.0% | |
AGGGTAATTCAGTGTTGCCA+AGG | + | chr4.2:26750746-26750765 | None:intergenic | 45.0% | |
ATGCCCTACCCTTCACAATT+GGG | + | chr4.2:26750061-26750080 | None:intergenic | 45.0% | |
CAAAGCGTGCAATGATATCC+TGG | + | chr4.2:26751686-26751705 | None:intergenic | 45.0% | |
CAACACTGAATTACCCTGCA+TGG | - | chr4.2:26750749-26750768 | MS.gene82362:intron | 45.0% | |
CCACAATCGCAAGTTTATGG+TGG | + | chr4.2:26751193-26751212 | None:intergenic | 45.0% | |
CCACCATAAACTTGCGATTG+TGG | - | chr4.2:26751190-26751209 | MS.gene82362:intron | 45.0% | |
CCTGGGGATGAATCAATAGA+AGG | - | chr4.2:26751612-26751631 | MS.gene82362:CDS | 45.0% | |
CTAGAAAGCAAGAAGCAAGC+CGG | + | chr4.2:26750720-26750739 | None:intergenic | 45.0% | |
CTTCATGACAGCGTATGCTT+TGG | + | chr4.2:26751274-26751293 | None:intergenic | 45.0% | |
GGACCACAATCGCAAGTTTA+TGG | + | chr4.2:26751196-26751215 | None:intergenic | 45.0% | |
GGCAGCGACAAAACAACATT+TGG | - | chr4.2:26748616-26748635 | MS.gene82362:CDS | 45.0% | |
GGGGATATGGACTTAGATAC+AGG | - | chr4.2:26750770-26750789 | MS.gene82362:intron | 45.0% | |
TAAGTCCATATCCCCATGCA+GGG | + | chr4.2:26750765-26750784 | None:intergenic | 45.0% | |
TACCATTCTCAACAACCTGC+AGG | - | chr4.2:26748550-26748569 | MS.gene82362:CDS | 45.0% | |
TGCAATGATATCCTGGAGAG+AGG | + | chr4.2:26751679-26751698 | None:intergenic | 45.0% | |
! | GAAGTTATTTCAGGGCCAGA+TGG | - | chr4.2:26751090-26751109 | MS.gene82362:intron | 45.0% |
!! | AGTTGCTGAAAACTGGCTTG+AGG | - | chr4.2:26750837-26750856 | MS.gene82362:intron | 45.0% |
!! | CCTTCTATTGATTCATCCCC+AGG | + | chr4.2:26751615-26751634 | None:intergenic | 45.0% |
!! | CTCCTTTGTTGTTGCGGTTT+CGG | - | chr4.2:26750192-26750211 | MS.gene82362:CDS | 45.0% |
!! | GCACGCTTTGAAAAGAGATC+AGG | - | chr4.2:26751696-26751715 | MS.gene82362:CDS | 45.0% |
!! | GGCTTGAGGTACTGCTTATA+TGG | - | chr4.2:26750851-26750870 | MS.gene82362:intron | 45.0% |
!! | GTGGAAGCCTTGTTTCTTTG+TGG | - | chr4.2:26751310-26751329 | MS.gene82362:intron | 45.0% |
AAGAACAAGCACGCCTGCAT+AGG | + | chr4.2:26750923-26750942 | None:intergenic | 50.0% | |
ACGTATAACGAAGGACGGTC+AGG | - | chr4.2:26750810-26750829 | MS.gene82362:intron | 50.0% | |
ACTCTCAGGTCCTTATGCTG+AGG | - | chr4.2:26750106-26750125 | MS.gene82362:intron | 50.0% | |
AGCCGAAACCGCAACAACAA+AGG | + | chr4.2:26750197-26750216 | None:intergenic | 50.0% | |
ATTATGCTCAGCCTCTCTCC+AGG | - | chr4.2:26751665-26751684 | MS.gene82362:CDS | 50.0% | |
CATTGGACAAGGTTGCTTGC+TGG | - | chr4.2:26748740-26748759 | MS.gene82362:intron | 50.0% | |
CTAAGTCCATATCCCCATGC+AGG | + | chr4.2:26750766-26750785 | None:intergenic | 50.0% | |
GATGGAGCTAAGCAATGGAC+TGG | - | chr4.2:26751108-26751127 | MS.gene82362:intron | 50.0% | |
GCCTAATCCTCCATTCCCAA+GGG | + | chr4.2:26750698-26750717 | None:intergenic | 50.0% | |
GGACTCCCTTCCAGATAAAG+TGG | - | chr4.2:26751734-26751753 | MS.gene82362:CDS | 50.0% | |
GTCCATTGCTTAGCTCCATC+TGG | + | chr4.2:26751108-26751127 | None:intergenic | 50.0% | |
TATAACGAAGGACGGTCAGG+AGG | - | chr4.2:26750813-26750832 | MS.gene82362:intron | 50.0% | |
TGCCTGCAGGTTGTTGAGAA+TGG | + | chr4.2:26748555-26748574 | None:intergenic | 50.0% | |
TTCCTCAGAGCCTCAGCATA+AGG | + | chr4.2:26750119-26750138 | None:intergenic | 50.0% | |
TTGGGAATGGAGGATTAGGC+CGG | - | chr4.2:26750698-26750717 | MS.gene82362:intron | 50.0% | |
AGGTGAGCTTGAATGCCTGC+AGG | + | chr4.2:26748568-26748587 | None:intergenic | 55.0% | |
GCCCTTGGGAATGGAGGATT+AGG | - | chr4.2:26750694-26750713 | MS.gene82362:intron | 55.0% | |
GGCCAGATGGAGCTAAGCAA+TGG | - | chr4.2:26751103-26751122 | MS.gene82362:intron | 55.0% | |
GGCCTAATCCTCCATTCCCA+AGG | + | chr4.2:26750699-26750718 | None:intergenic | 55.0% | |
GTCCTTATGCTGAGGCTCTG+AGG | - | chr4.2:26750114-26750133 | MS.gene82362:intron | 55.0% | |
TGTTGCCAGCGACAAAGCAG+CGG | - | chr4.2:26748701-26748720 | MS.gene82362:intron | 55.0% | |
!! | GCTGAGGCTCTGAGGAAACT+GGG | - | chr4.2:26750122-26750141 | MS.gene82362:intron | 55.0% |
!! | GGAGCTAAGCAATGGACTGG+AGG | - | chr4.2:26751111-26751130 | MS.gene82362:intron | 55.0% |
!! | TGCTGAGGCTCTGAGGAAAC+TGG | - | chr4.2:26750121-26750140 | MS.gene82362:intron | 55.0% |
AGGAGCCAGATGCAGCCCTT+GGG | - | chr4.2:26750680-26750699 | MS.gene82362:intron | 60.0% | |
CCAGATGCAGCCCTTGGGAA+TGG | - | chr4.2:26750685-26750704 | MS.gene82362:intron | 60.0% | |
CCATTCCCAAGGGCTGCATC+TGG | + | chr4.2:26750688-26750707 | None:intergenic | 60.0% | |
GATGCAGCCCTTGGGAATGG+AGG | - | chr4.2:26750688-26750707 | MS.gene82362:intron | 60.0% | |
! | CAGTTCCGCTGCTTTGTCGC+TGG | + | chr4.2:26748709-26748728 | None:intergenic | 60.0% |
CAGGAGCCAGATGCAGCCCT+TGG | - | chr4.2:26750679-26750698 | MS.gene82362:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 26748540 | 26751758 | 26748540 | ID=MS.gene82362 |
chr4.2 | mRNA | 26748540 | 26751758 | 26748540 | ID=MS.gene82362.t1;Parent=MS.gene82362 |
chr4.2 | exon | 26751548 | 26751758 | 26751548 | ID=MS.gene82362.t1.exon1;Parent=MS.gene82362.t1 |
chr4.2 | CDS | 26751548 | 26751758 | 26751548 | ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1 |
chr4.2 | exon | 26750319 | 26750551 | 26750319 | ID=MS.gene82362.t1.exon2;Parent=MS.gene82362.t1 |
chr4.2 | CDS | 26750319 | 26750551 | 26750319 | ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1 |
chr4.2 | exon | 26750126 | 26750227 | 26750126 | ID=MS.gene82362.t1.exon3;Parent=MS.gene82362.t1 |
chr4.2 | CDS | 26750126 | 26750227 | 26750126 | ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1 |
chr4.2 | exon | 26749440 | 26749616 | 26749440 | ID=MS.gene82362.t1.exon4;Parent=MS.gene82362.t1 |
chr4.2 | CDS | 26749440 | 26749616 | 26749440 | ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1 |
chr4.2 | exon | 26748993 | 26749268 | 26748993 | ID=MS.gene82362.t1.exon5;Parent=MS.gene82362.t1 |
chr4.2 | CDS | 26748993 | 26749268 | 26748993 | ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1 |
chr4.2 | exon | 26748540 | 26748704 | 26748540 | ID=MS.gene82362.t1.exon6;Parent=MS.gene82362.t1 |
chr4.2 | CDS | 26748540 | 26748704 | 26748540 | ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1 |
Gene Sequence |
Protein sequence |