AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82362


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82362.t1 MTR_4g082950 95.385 390 16 1 1 388 1 390 0.0 770
MS.gene82362.t1 MTR_0288s0040 77.019 322 73 1 67 387 44 365 0.0 540
MS.gene82362.t1 MTR_3g462340 60.000 315 126 0 73 387 20 334 7.39e-135 406
MS.gene82362.t1 MTR_2g014460 50.482 311 147 3 80 387 183 489 5.08e-97 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82362.t1 AT3G29320 69.034 352 102 2 41 387 50 399 3.25e-178 521
MS.gene82362.t1 AT3G46970 57.440 336 138 2 54 387 3 335 3.64e-134 404

Find 108 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTCTAATTGCTCTTC+TGG 0.206585 4.2:+26751609 None:intergenic
TTCTATGGAGAAGTTATTTC+AGG 0.216727 4.2:-26749195 MS.gene82362:CDS
GATCAGGAATGACGGTAAAT+TGG 0.232719 4.2:-26748564 MS.gene82362:CDS
GATTTGAAGGCTTTCAATAC+TGG 0.245062 4.2:-26749036 MS.gene82362:CDS
GTGATTCCCTTATCATAAAT+TGG 0.247012 4.2:-26750391 MS.gene82362:CDS
TCTTATCCAGTTAGATTCTA+TGG 0.254682 4.2:-26749210 MS.gene82362:CDS
ATTTGTACCACCACTTTATC+TGG 0.266367 4.2:+26748532 None:intergenic
AATTACCCTGCATGGGGATA+TGG 0.274456 4.2:-26749519 MS.gene82362:CDS
GCAAGCTTATTACATGTCTA+TGG 0.286957 4.2:-26750330 MS.gene82362:CDS
TTTAGAGGATGTGGCTAATC+AGG 0.301609 4.2:-26750125 MS.gene82362:intron
TGCATTCCAATTTATGATAA+GGG 0.315129 4.2:+26750385 None:intergenic
GGACCACAATCGCAAGTTTA+TGG 0.317000 4.2:+26749083 None:intergenic
TGCTGAGGCTCTGAGGAAAC+TGG 0.320911 4.2:-26750155 MS.gene82362:CDS
CCCATTCCAAATCAAACATT+TGG 0.324417 4.2:-26751681 MS.gene82362:CDS
AACTAAAGAATTTGATTTGA+AGG 0.326464 4.2:-26749049 MS.gene82362:CDS
GACTGGAGGAGAAAGTATTT+TGG 0.328200 4.2:-26749151 MS.gene82362:CDS
TCGCTGCCAAATGTTTGATT+TGG 0.348700 4.2:+26751675 None:intergenic
TTGCATTCCAATTTATGATA+AGG 0.352440 4.2:+26750384 None:intergenic
AGTTGCAAAGTAAGCCTTAC+TGG 0.354966 4.2:+26750427 None:intergenic
AGGGCATTGTTAAATGCAAT+TGG 0.355293 4.2:-26750202 MS.gene82362:CDS
TTCTTTAGTTGAAACTTTAG+TGG 0.365317 4.2:+26749062 None:intergenic
CAGTTCCGCTGCTTTGTCGC+TGG 0.365462 4.2:+26751570 None:intergenic
CCTTCTATTGATTCATCCCC+AGG 0.374631 4.2:+26748664 None:intergenic
AGGAGGAAGTTGCTGAAAAC+TGG 0.381174 4.2:-26749446 MS.gene82362:CDS
GGCAGCGACAAAACAACATT+TGG 0.381599 4.2:-26751660 MS.gene82362:CDS
ACTTCTCCATAGAATCTAAC+TGG 0.381745 4.2:+26749204 None:intergenic
GAAACTGGGTTACAATTTAG+AGG 0.387483 4.2:-26750140 MS.gene82362:CDS
CCATTCCCAAGGGCTGCATC+TGG 0.392098 4.2:+26749591 None:intergenic
TTCTTGCTTTCTAGACTCCT+TGG 0.404594 4.2:-26749550 MS.gene82362:CDS
ATCAGGAATGACGGTAAATT+GGG 0.418725 4.2:-26748563 MS.gene82362:CDS
GTCCATTGCTTAGCTCCATC+TGG 0.426769 4.2:+26749171 None:intergenic
CTTCATGACAGCGTATGCTT+TGG 0.427119 4.2:+26749005 None:intergenic
CCAAATGTTTGATTTGGAAT+GGG 0.448607 4.2:+26751681 None:intergenic
ATTTGAAGGCTTTCAATACT+GGG 0.449329 4.2:-26749035 MS.gene82362:CDS
ACGTATAACGAAGGACGGTC+AGG 0.458652 4.2:-26749466 MS.gene82362:CDS
GCCCTTGGGAATGGAGGATT+AGG 0.460169 4.2:-26749582 MS.gene82362:CDS
ATCGTTTCTCTGAATTTCCC+AGG 0.466281 4.2:+26749236 None:intergenic
TTCCTCAGAGCCTCAGCATA+AGG 0.466595 4.2:+26750160 None:intergenic
CAGGAGCCAGATGCAGCCCT+TGG 0.468994 4.2:-26749597 MS.gene82362:CDS
CCAGATGCAGCCCTTGGGAA+TGG 0.470381 4.2:-26749591 MS.gene82362:CDS
GCCAAATGTTTGATTTGGAA+TGG 0.475175 4.2:+26751680 None:intergenic
TTACTGGGCTCAAATTTCTC+AGG 0.477856 4.2:+26750443 None:intergenic
CCTGGGGATGAATCAATAGA+AGG 0.480958 4.2:-26748664 MS.gene82362:CDS
GCACGCTTTGAAAAGAGATC+AGG 0.482626 4.2:-26748580 MS.gene82362:CDS
GCTTATGATGTTCCAATACC+TGG 0.487169 4.2:-26749123 MS.gene82362:CDS
GGGCATTGTTAAATGCAATT+GGG 0.488583 4.2:-26750201 MS.gene82362:CDS
GGGTTACAATTTAGAGGATG+TGG 0.490297 4.2:-26750134 MS.gene82362:CDS
ATTGGGAATTTACAACTCTC+AGG 0.491640 4.2:-26750184 MS.gene82362:CDS
TGAGAAATTTGAGCCCAGTA+AGG 0.492541 4.2:-26750441 MS.gene82362:CDS
CATGTCTATGGAGTATCTAC+AGG 0.498390 4.2:-26750318 MS.gene82362:intron
TCTGTTACATTCTATACCCT+GGG 0.504284 4.2:-26748681 MS.gene82362:CDS
GAACTGAAAGAACGACTCAT+TGG 0.504413 4.2:-26751553 MS.gene82362:CDS
GGGGATATGGACTTAGATAC+AGG 0.507764 4.2:-26749506 MS.gene82362:CDS
CAAAGCGTGCAATGATATCC+TGG 0.512626 4.2:+26748593 None:intergenic
AACACTGAATTACCCTGCAT+GGG 0.518781 4.2:-26749526 MS.gene82362:CDS
ATTTATAGATGGGAAATCCC+TGG 0.520518 4.2:-26749254 MS.gene82362:intron
TCTATGGAGAAGTTATTTCA+GGG 0.524340 4.2:-26749194 MS.gene82362:CDS
ATCTGTTACATTCTATACCC+TGG 0.525611 4.2:-26748682 MS.gene82362:CDS
CAACACTGAATTACCCTGCA+TGG 0.525876 4.2:-26749527 MS.gene82362:CDS
TACCATTCTCAACAACCTGC+AGG 0.529812 4.2:-26751726 MS.gene82362:CDS
TACCACCACTTTATCTGGAA+GGG 0.530834 4.2:+26748537 None:intergenic
AGGAGCCAGATGCAGCCCTT+GGG 0.536797 4.2:-26749596 MS.gene82362:CDS
CCACCATAAACTTGCGATTG+TGG 0.538883 4.2:-26749086 MS.gene82362:CDS
CTAAGTCCATATCCCCATGC+AGG 0.541539 4.2:+26749513 None:intergenic
GGCCTAATCCTCCATTCCCA+AGG 0.543436 4.2:+26749580 None:intergenic
TGCCTGCAGGTTGTTGAGAA+TGG 0.544681 4.2:+26751724 None:intergenic
CTTCTATTGATTCATCCCCA+GGG 0.545352 4.2:+26748665 None:intergenic
GATGGAGCTAAGCAATGGAC+TGG 0.553513 4.2:-26749168 MS.gene82362:CDS
GAAGTTATTTCAGGGCCAGA+TGG 0.555318 4.2:-26749186 MS.gene82362:CDS
ATTATGCTCAGCCTCTCTCC+AGG 0.555876 4.2:-26748611 MS.gene82362:CDS
TTTATAGATGGGAAATCCCT+GGG 0.557702 4.2:-26749253 MS.gene82362:intron
GTACCACCACTTTATCTGGA+AGG 0.562027 4.2:+26748536 None:intergenic
GGACTCCCTTCCAGATAAAG+TGG 0.565184 4.2:-26748542 MS.gene82362:CDS
TTGGGAATGGAGGATTAGGC+CGG 0.569055 4.2:-26749578 MS.gene82362:CDS
TGCAACGAATTCATTTGAAG+TGG 0.569514 4.2:+26750526 None:intergenic
AATTTATGATAAGGGAATCA+CGG 0.571565 4.2:+26750393 None:intergenic
CTAGAAAGCAAGAAGCAAGC+CGG 0.574391 4.2:+26749559 None:intergenic
GATGCAGCCCTTGGGAATGG+AGG 0.575620 4.2:-26749588 MS.gene82362:CDS
GGCCAGATGGAGCTAAGCAA+TGG 0.578954 4.2:-26749173 MS.gene82362:CDS
GTTGCAAAGTAAGCCTTACT+GGG 0.579338 4.2:+26750428 None:intergenic
TATGGACTTAGATACAGGTA+TGG 0.584953 4.2:-26749501 MS.gene82362:CDS
GCTGAGGCTCTGAGGAAACT+GGG 0.590579 4.2:-26750154 MS.gene82362:CDS
TCGTTTCTCTGAATTTCCCA+GGG 0.593399 4.2:+26749237 None:intergenic
CAACATATGAATATTATGAG+AGG 0.596709 4.2:-26750364 MS.gene82362:CDS
GCCTAATCCTCCATTCCCAA+GGG 0.606925 4.2:+26749581 None:intergenic
AGGGTAATTCAGTGTTGCCA+AGG 0.609943 4.2:+26749533 None:intergenic
TAAGTCCATATCCCCATGCA+GGG 0.610745 4.2:+26749514 None:intergenic
GTCCTTATGCTGAGGCTCTG+AGG 0.613621 4.2:-26750162 MS.gene82362:CDS
TGAAAAGAGATCAGGAATGA+CGG 0.617393 4.2:-26748572 MS.gene82362:CDS
TATAACGAAGGACGGTCAGG+AGG 0.619104 4.2:-26749463 MS.gene82362:CDS
TGTCATGAAGAATGCAGAGA+AGG 0.620102 4.2:-26748992 MS.gene82362:intron
AGGTGAGCTTGAATGCCTGC+AGG 0.620576 4.2:+26751711 None:intergenic
AACATATGAATATTATGAGA+GGG 0.623422 4.2:-26750363 MS.gene82362:CDS
GATTTGGAATGGGAATGTAA+AGG 0.624865 4.2:+26751691 None:intergenic
GGAGCTAAGCAATGGACTGG+AGG 0.628655 4.2:-26749165 MS.gene82362:CDS
TGCAATGATATCCTGGAGAG+AGG 0.629144 4.2:+26748600 None:intergenic
ATTCAAACAACGTATAACGA+AGG 0.632464 4.2:-26749475 MS.gene82362:CDS
TTTGAAGGCTTTCAATACTG+GGG 0.639183 4.2:-26749034 MS.gene82362:CDS
CCACAATCGCAAGTTTATGG+TGG 0.645345 4.2:+26749086 None:intergenic
TATTGGAACATCATAAGCAA+CGG 0.649331 4.2:+26749128 None:intergenic
ACTCTCAGGTCCTTATGCTG+AGG 0.656696 4.2:-26750170 MS.gene82362:CDS
AAACAACGTATAACGAAGGA+CGG 0.658557 4.2:-26749471 MS.gene82362:CDS
TGTTGCCAGCGACAAAGCAG+CGG 0.667849 4.2:-26751575 MS.gene82362:CDS
ACACTGAATTACCCTGCATG+GGG 0.680238 4.2:-26749525 MS.gene82362:CDS
CTCCCTTCCAGATAAAGTGG+TGG 0.681896 4.2:-26748539 None:intergenic
AGTTGCTGAAAACTGGCTTG+AGG 0.695370 4.2:-26749439 MS.gene82362:intron
AAAGAACGACTCATTGGACA+AGG 0.698404 4.2:-26751547 MS.gene82362:intron
CTGTTACATTCTATACCCTG+GGG 0.720986 4.2:-26748680 MS.gene82362:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACATTGTACTATAATATT+TGG + chr4.2:26750355-26750374 None:intergenic 15.0%
!! GATATAATACTAAAAAATCT+TGG + chr4.2:26749654-26749673 None:intergenic 15.0%
!! TACATTCTAATATATTATTC+AGG - chr4.2:26748805-26748824 MS.gene82362:intron 15.0%
!!! ACATTGAAACTTTAAAAATA+TGG + chr4.2:26749280-26749299 None:intergenic 15.0%
!!! TGCTTTTTTTTTTTTTTTGA+AGG + chr4.2:26750491-26750510 None:intergenic 15.0%
!! AAAAAAGTGAGAATATTGTT+AGG - chr4.2:26750450-26750469 MS.gene82362:CDS 20.0%
!! AACATATGAATATTATGAGA+GGG - chr4.2:26749913-26749932 MS.gene82362:intron 20.0%
!! AATATCTTTCCATGTAAATT+TGG - chr4.2:26749102-26749121 MS.gene82362:CDS 20.0%
!! AGGAAACTTGATTTATATAA+AGG + chr4.2:26749431-26749450 None:intergenic 20.0%
!! ATAAATCTAACATAAAACCA+TGG + chr4.2:26748968-26748987 None:intergenic 20.0%
!! ATATCTCAGATATAAATCAT+CGG - chr4.2:26751473-26751492 MS.gene82362:intron 20.0%
!! ATTGTTACATGTTTGTTTAA+TGG - chr4.2:26750427-26750446 MS.gene82362:CDS 20.0%
!! CCAATAAGGAATTAATATTT+AGG + chr4.2:26749714-26749733 None:intergenic 20.0%
!! CCTAAATATTAATTCCTTAT+TGG - chr4.2:26749711-26749730 MS.gene82362:intron 20.0%
!! GAAATAAAGATTAGTGATTA+TGG - chr4.2:26749145-26749164 MS.gene82362:CDS 20.0%
!! GAAATGTAATAACTAAATAC+GGG - chr4.2:26749236-26749255 MS.gene82362:CDS 20.0%
!! GGAAATGTAATAACTAAATA+CGG - chr4.2:26749235-26749254 MS.gene82362:CDS 20.0%
!! TATATTAGAATGTAAAGAAG+TGG + chr4.2:26748799-26748818 None:intergenic 20.0%
!! TTATTAAATCTGAGCTAATA+TGG - chr4.2:26749180-26749199 MS.gene82362:CDS 20.0%
!!! AACTAAAGAATTTGATTTGA+AGG - chr4.2:26751227-26751246 MS.gene82362:intron 20.0%
!!! ATGATTTATATCTGAGATAT+AGG + chr4.2:26751473-26751492 None:intergenic 20.0%
!!! GAGAAGTTTTTTTTCATTTA+TGG - chr4.2:26751495-26751514 MS.gene82362:intron 20.0%
!!! TTTTAATGAATTTCGTTTGA+AGG - chr4.2:26749313-26749332 MS.gene82362:intron 20.0%
!!! TTTTTTTTCTTCTGCAAATA+TGG - chr4.2:26749687-26749706 MS.gene82362:intron 20.0%
! AAAATTGTCAATCTATTACG+AGG + chr4.2:26749481-26749500 None:intergenic 25.0%
! AAACAAACATGTAACAATCT+TGG + chr4.2:26750425-26750444 None:intergenic 25.0%
! AATTTATGATAAGGGAATCA+CGG + chr4.2:26749886-26749905 None:intergenic 25.0%
! CAACATATGAATATTATGAG+AGG - chr4.2:26749912-26749931 MS.gene82362:intron 25.0%
! CGAATGAAATGATAGTAATA+TGG - chr4.2:26750600-26750619 MS.gene82362:intron 25.0%
! TAACAATCTTGGTTCAAATA+TGG + chr4.2:26750414-26750433 None:intergenic 25.0%
! TAGTACAATGTATCTCTTAT+AGG - chr4.2:26750362-26750381 MS.gene82362:CDS 25.0%
! TCCATGTAAATTTGGATTAA+TGG - chr4.2:26749110-26749129 MS.gene82362:CDS 25.0%
! TCCATTAATCCAAATTTACA+TGG + chr4.2:26749114-26749133 None:intergenic 25.0%
! TGCATTCCAATTTATGATAA+GGG + chr4.2:26749894-26749913 None:intergenic 25.0%
! TTATATAAAGGCAAGTCTTA+GGG + chr4.2:26749419-26749438 None:intergenic 25.0%
! TTCTATTGACAACAAAGATT+AGG - chr4.2:26750387-26750406 MS.gene82362:CDS 25.0%
! TTCTTTAGTTGAAACTTTAG+TGG + chr4.2:26751217-26751236 None:intergenic 25.0%
! TTGCATTCCAATTTATGATA+AGG + chr4.2:26749895-26749914 None:intergenic 25.0%
! TTTAGATAGTAGCTTTCTTA+AGG - chr4.2:26749029-26749048 MS.gene82362:CDS 25.0%
! TTTATATAAAGGCAAGTCTT+AGG + chr4.2:26749420-26749439 None:intergenic 25.0%
!! CAGATAACAATTTTGTGAAA+TGG + chr4.2:26750318-26750337 None:intergenic 25.0%
!! GTTTTTCTTGTAGTTTTTCT+TGG + chr4.2:26750568-26750587 None:intergenic 25.0%
AATTGTTATCTGTCATCTTG+AGG - chr4.2:26750326-26750345 MS.gene82362:CDS 30.0%
AGTATCTACAGGTTCATATT+GGG - chr4.2:26749969-26749988 MS.gene82362:intron 30.0%
AGTGTTCTCTTGAAGTTATA+AGG - chr4.2:26749575-26749594 MS.gene82362:CDS 30.0%
ATTAGTTCCATTACGATTCA+AGG + chr4.2:26749451-26749470 None:intergenic 30.0%
ATTCAAACAACGTATAACGA+AGG - chr4.2:26750801-26750820 MS.gene82362:intron 30.0%
ATTTGAAGGCTTTCAATACT+GGG - chr4.2:26751241-26751260 MS.gene82362:intron 30.0%
GGCAGCAATAATATGAAAAT+TGG + chr4.2:26750902-26750921 None:intergenic 30.0%
GTGATTCCCTTATCATAAAT+TGG - chr4.2:26749885-26749904 MS.gene82362:intron 30.0%
TATATAAAGGCAAGTCTTAG+GGG + chr4.2:26749418-26749437 None:intergenic 30.0%
TATTGGAACATCATAAGCAA+CGG + chr4.2:26751151-26751170 None:intergenic 30.0%
TCACAATTGGGAAAAAATGT+AGG + chr4.2:26750049-26750068 None:intergenic 30.0%
TCTTATCCAGTTAGATTCTA+TGG - chr4.2:26751066-26751085 MS.gene82362:intron 30.0%
TGACGTGTCTATTTATAGAT+GGG - chr4.2:26751012-26751031 MS.gene82362:intron 30.0%
! AGTTTGATGGAAATTTTGCT+GGG - chr4.2:26748887-26748906 MS.gene82362:intron 30.0%
! ATTTTGTGAAATGGACAGAA+AGG + chr4.2:26750309-26750328 None:intergenic 30.0%
! CAATTTGAAGCAAGAGAATA+AGG + chr4.2:26751442-26751461 None:intergenic 30.0%
! CATGTAACAATAAGTTGAAC+TGG - chr4.2:26750276-26750295 MS.gene82362:intron 30.0%
! CTTTCTTCTATCACTCTTTT+TGG - chr4.2:26750952-26750971 MS.gene82362:intron 30.0%
! GAAATTTTGCTGGGTTTAAT+TGG - chr4.2:26748896-26748915 MS.gene82362:intron 30.0%
! TCTATGGAGAAGTTATTTCA+GGG - chr4.2:26751082-26751101 MS.gene82362:intron 30.0%
! TTCTATGGAGAAGTTATTTC+AGG - chr4.2:26751081-26751100 MS.gene82362:intron 30.0%
! TTTTGTGAAATGGACAGAAA+GGG + chr4.2:26750308-26750327 None:intergenic 30.0%
!! CCAAATGTTTGATTTGGAAT+GGG + chr4.2:26748598-26748617 None:intergenic 30.0%
!! TCTTCTTCAAAAGTACTTTC+TGG - chr4.2:26751360-26751379 MS.gene82362:intron 30.0%
!! TTTATCCCTTTGAAGTTTGT+TGG - chr4.2:26749211-26749230 MS.gene82362:CDS 30.0%
!!! ACATTTTTTCCCAATTGTGA+AGG - chr4.2:26750049-26750068 MS.gene82362:intron 30.0%
!!! CATTTTTTCCCAATTGTGAA+GGG - chr4.2:26750050-26750069 MS.gene82362:intron 30.0%
!!! TTACTAGTGCATTTTTTGGA+AGG - chr4.2:26748919-26748938 MS.gene82362:intron 30.0%
!!! TTGGTTACTAGTGCATTTTT+TGG - chr4.2:26748915-26748934 MS.gene82362:intron 30.0%
AAACAACGTATAACGAAGGA+CGG - chr4.2:26750805-26750824 MS.gene82362:intron 35.0%
AAATGACCCGTGTTTCATAA+AGG + chr4.2:26749998-26750017 None:intergenic 35.0%
ACTTATTGTTACATGCTACC+AGG + chr4.2:26750271-26750290 None:intergenic 35.0%
ACTTCTCCATAGAATCTAAC+TGG + chr4.2:26751075-26751094 None:intergenic 35.0%
ATACATTCTAAGCTCAGTAG+TGG + chr4.2:26751400-26751419 None:intergenic 35.0%
ATCAAACTGAAACTCTTGCA+AGG + chr4.2:26748875-26748894 None:intergenic 35.0%
ATCAGGAATGACGGTAAATT+GGG - chr4.2:26751713-26751732 MS.gene82362:CDS 35.0%
ATCGTAACTTATATTGCCAC+AGG - chr4.2:26749066-26749085 MS.gene82362:CDS 35.0%
ATCTGTTACATTCTATACCC+TGG - chr4.2:26751594-26751613 MS.gene82362:CDS 35.0%
ATTGGGAATTTACAACTCTC+AGG - chr4.2:26750092-26750111 MS.gene82362:intron 35.0%
ATTTATAGATGGGAAATCCC+TGG - chr4.2:26751022-26751041 MS.gene82362:intron 35.0%
CAAACTCACATACAATTCAC+AGG - chr4.2:26750660-26750679 MS.gene82362:intron 35.0%
CAACAAAGGAGAACAATAGT+AGG + chr4.2:26750183-26750202 None:intergenic 35.0%
CAAGTTTCCTTGAATCGTAA+TGG - chr4.2:26749441-26749460 MS.gene82362:CDS 35.0%
CCCATTCCAAATCAAACATT+TGG - chr4.2:26748595-26748614 MS.gene82362:CDS 35.0%
CTGACGTGTCTATTTATAGA+TGG - chr4.2:26751011-26751030 MS.gene82362:intron 35.0%
GAAACTGGGTTACAATTTAG+AGG - chr4.2:26750136-26750155 MS.gene82362:CDS 35.0%
GAGTATCTACAGGTTCATAT+TGG - chr4.2:26749968-26749987 MS.gene82362:intron 35.0%
GATTTGAAGGCTTTCAATAC+TGG - chr4.2:26751240-26751259 MS.gene82362:intron 35.0%
GCAAGCTTATTACATGTCTA+TGG - chr4.2:26749946-26749965 MS.gene82362:intron 35.0%
GGATTAATGGAATCTAGTTG+AGG - chr4.2:26749123-26749142 MS.gene82362:CDS 35.0%
GTAAAATGTCTTCATTCGTG+TGG - chr4.2:26750524-26750543 MS.gene82362:CDS 35.0%
GTGTGGAAACATACTAATGA+AGG - chr4.2:26750541-26750560 MS.gene82362:intron 35.0%
TAACTTATATTGCCACAGGA+AGG - chr4.2:26749070-26749089 MS.gene82362:CDS 35.0%
TATGGACTTAGATACAGGTA+TGG - chr4.2:26750775-26750794 MS.gene82362:intron 35.0%
TCAATGCACATTATAGACGT+TGG - chr4.2:26749002-26749021 MS.gene82362:CDS 35.0%
TCTCTTGCTTCAAATTGTAG+TGG - chr4.2:26751445-26751464 MS.gene82362:intron 35.0%
TCTGTTACATTCTATACCCT+GGG - chr4.2:26751595-26751614 MS.gene82362:CDS 35.0%
TGAAAAGAGATCAGGAATGA+CGG - chr4.2:26751704-26751723 MS.gene82362:CDS 35.0%
TGCAACGAATTCATTTGAAG+TGG + chr4.2:26749753-26749772 None:intergenic 35.0%
TGGGTTTCCTTTATGAAACA+CGG - chr4.2:26749988-26750007 MS.gene82362:intron 35.0%
TGTTTATCAAATAGTCCTCC+TGG - chr4.2:26750250-26750269 MS.gene82362:intron 35.0%
TTCCTCCAACAAACTTCAAA+GGG + chr4.2:26749219-26749238 None:intergenic 35.0%
TTGCAAGAGTTTCAGTTTGA+TGG - chr4.2:26748874-26748893 MS.gene82362:intron 35.0%
TTGGAAGGTTCTCAAAAGTA+AGG - chr4.2:26748934-26748953 MS.gene82362:intron 35.0%
TTTATAGATGGGAAATCCCT+GGG - chr4.2:26751023-26751042 MS.gene82362:intron 35.0%
TTTCCTCCAACAAACTTCAA+AGG + chr4.2:26749220-26749239 None:intergenic 35.0%
TTTCTCAGGAGAAAAAGATG+TGG + chr4.2:26749822-26749841 None:intergenic 35.0%
TTTCTTAAGGTGTGCAGTAT+AGG - chr4.2:26749042-26749061 MS.gene82362:CDS 35.0%
TTTGAAGGCTTTCAATACTG+GGG - chr4.2:26751242-26751261 MS.gene82362:intron 35.0%
! CAGTTTGATGGAAATTTTGC+TGG - chr4.2:26748886-26748905 MS.gene82362:intron 35.0%
! GATTTGGAATGGGAATGTAA+AGG + chr4.2:26748588-26748607 None:intergenic 35.0%
! GGGCATTGTTAAATGCAATT+GGG - chr4.2:26750075-26750094 MS.gene82362:intron 35.0%
!! AGGGCATTGTTAAATGCAAT+TGG - chr4.2:26750074-26750093 MS.gene82362:intron 35.0%
!! ATTGTTCTCCTTTGTTGTTG+CGG - chr4.2:26750186-26750205 MS.gene82362:CDS 35.0%
!! GCCAAATGTTTGATTTGGAA+TGG + chr4.2:26748599-26748618 None:intergenic 35.0%
!!! CTAGTTTTGTATCCAGGTAT+TGG + chr4.2:26751168-26751187 None:intergenic 35.0%
AAAGAACGACTCATTGGACA+AGG - chr4.2:26748729-26748748 MS.gene82362:intron 40.0%
AACACTGAATTACCCTGCAT+GGG - chr4.2:26750750-26750769 MS.gene82362:intron 40.0%
AAGAATGCAGAGAAGGTTTG+TGG - chr4.2:26751291-26751310 MS.gene82362:intron 40.0%
AAGACACTGAACTTAGATGC+AGG + chr4.2:26751344-26751363 None:intergenic 40.0%
AGGTTCTCAAAAGTAAGGAG+TGG - chr4.2:26748939-26748958 MS.gene82362:intron 40.0%
AGTTGCAAAGTAAGCCTTAC+TGG + chr4.2:26749852-26749871 None:intergenic 40.0%
ATCGTTTCTCTGAATTTCCC+AGG + chr4.2:26751043-26751062 None:intergenic 40.0%
ATTAAGTGACATCCTTCCTG+TGG + chr4.2:26749085-26749104 None:intergenic 40.0%
CATATTATTGCTGCCTATGC+AGG - chr4.2:26750907-26750926 MS.gene82362:intron 40.0%
CCTGCAAGTGTTAACCAATA+AGG + chr4.2:26749728-26749747 None:intergenic 40.0%
CTGTTACATTCTATACCCTG+GGG - chr4.2:26751596-26751615 MS.gene82362:CDS 40.0%
GAACTGAAAGAACGACTCAT+TGG - chr4.2:26748723-26748742 MS.gene82362:intron 40.0%
GAGCTTTCTAATTGCTCTTC+TGG + chr4.2:26748670-26748689 None:intergenic 40.0%
GATCAGGAATGACGGTAAAT+TGG - chr4.2:26751712-26751731 MS.gene82362:CDS 40.0%
GCTTATGATGTTCCAATACC+TGG - chr4.2:26751153-26751172 MS.gene82362:intron 40.0%
GGGTTACAATTTAGAGGATG+TGG - chr4.2:26750142-26750161 MS.gene82362:CDS 40.0%
GGGTTTCCTTTATGAAACAC+GGG - chr4.2:26749989-26750008 MS.gene82362:intron 40.0%
GGTTCTCAAAAGTAAGGAGT+GGG - chr4.2:26748940-26748959 MS.gene82362:intron 40.0%
GTAAGGACCACAAAGAAACA+AGG + chr4.2:26751320-26751339 None:intergenic 40.0%
GTTGCAAAGTAAGCCTTACT+GGG + chr4.2:26749851-26749870 None:intergenic 40.0%
TATTGTTACATGCTACCAGG+AGG + chr4.2:26750268-26750287 None:intergenic 40.0%
TCGCTGCCAAATGTTTGATT+TGG + chr4.2:26748604-26748623 None:intergenic 40.0%
TCGTTTCTCTGAATTTCCCA+GGG + chr4.2:26751042-26751061 None:intergenic 40.0%
TGAACTTAGATGCAGGTGTA+AGG + chr4.2:26751337-26751356 None:intergenic 40.0%
TGAGAAATTTGAGCCCAGTA+AGG - chr4.2:26749835-26749854 MS.gene82362:intron 40.0%
TGTCATGAAGAATGCAGAGA+AGG - chr4.2:26751284-26751303 MS.gene82362:intron 40.0%
TTACTGGGCTCAAATTTCTC+AGG + chr4.2:26749836-26749855 None:intergenic 40.0%
TTCTTGCTTTCTAGACTCCT+TGG - chr4.2:26750726-26750745 MS.gene82362:intron 40.0%
TTTAGAGGATGTGGCTAATC+AGG - chr4.2:26750151-26750170 MS.gene82362:CDS 40.0%
TTTCCCAATTGTGAAGGGTA+GGG - chr4.2:26750055-26750074 MS.gene82362:intron 40.0%
! CATGTCTATGGAGTATCTAC+AGG - chr4.2:26749958-26749977 MS.gene82362:intron 40.0%
! CCTTATTGGTTAACACTTGC+AGG - chr4.2:26749725-26749744 MS.gene82362:intron 40.0%
! TTTTCCCAATTGTGAAGGGT+AGG - chr4.2:26750054-26750073 MS.gene82362:intron 40.0%
!! ATCCCTTTGAAGTTTGTTGG+AGG - chr4.2:26749214-26749233 MS.gene82362:CDS 40.0%
!! CTTCTATTGATTCATCCCCA+GGG + chr4.2:26751614-26751633 None:intergenic 40.0%
!!! GACTGGAGGAGAAAGTATTT+TGG - chr4.2:26751125-26751144 MS.gene82362:intron 40.0%
!!! GTGGTTCTAGTTTTGTATCC+AGG + chr4.2:26751174-26751193 None:intergenic 40.0%
AAAGTAAGGAGTGGGAACCA+TGG - chr4.2:26748948-26748967 MS.gene82362:intron 45.0%
AATGCCCTACCCTTCACAAT+TGG + chr4.2:26750062-26750081 None:intergenic 45.0%
AATTACCCTGCATGGGGATA+TGG - chr4.2:26750757-26750776 MS.gene82362:intron 45.0%
ACACTGAATTACCCTGCATG+GGG - chr4.2:26750751-26750770 MS.gene82362:intron 45.0%
AGGAGGAAGTTGCTGAAAAC+TGG - chr4.2:26750830-26750849 MS.gene82362:intron 45.0%
AGGGTAATTCAGTGTTGCCA+AGG + chr4.2:26750746-26750765 None:intergenic 45.0%
ATGCCCTACCCTTCACAATT+GGG + chr4.2:26750061-26750080 None:intergenic 45.0%
CAAAGCGTGCAATGATATCC+TGG + chr4.2:26751686-26751705 None:intergenic 45.0%
CAACACTGAATTACCCTGCA+TGG - chr4.2:26750749-26750768 MS.gene82362:intron 45.0%
CCACAATCGCAAGTTTATGG+TGG + chr4.2:26751193-26751212 None:intergenic 45.0%
CCACCATAAACTTGCGATTG+TGG - chr4.2:26751190-26751209 MS.gene82362:intron 45.0%
CCTGGGGATGAATCAATAGA+AGG - chr4.2:26751612-26751631 MS.gene82362:CDS 45.0%
CTAGAAAGCAAGAAGCAAGC+CGG + chr4.2:26750720-26750739 None:intergenic 45.0%
CTTCATGACAGCGTATGCTT+TGG + chr4.2:26751274-26751293 None:intergenic 45.0%
GGACCACAATCGCAAGTTTA+TGG + chr4.2:26751196-26751215 None:intergenic 45.0%
GGCAGCGACAAAACAACATT+TGG - chr4.2:26748616-26748635 MS.gene82362:CDS 45.0%
GGGGATATGGACTTAGATAC+AGG - chr4.2:26750770-26750789 MS.gene82362:intron 45.0%
TAAGTCCATATCCCCATGCA+GGG + chr4.2:26750765-26750784 None:intergenic 45.0%
TACCATTCTCAACAACCTGC+AGG - chr4.2:26748550-26748569 MS.gene82362:CDS 45.0%
TGCAATGATATCCTGGAGAG+AGG + chr4.2:26751679-26751698 None:intergenic 45.0%
! GAAGTTATTTCAGGGCCAGA+TGG - chr4.2:26751090-26751109 MS.gene82362:intron 45.0%
!! AGTTGCTGAAAACTGGCTTG+AGG - chr4.2:26750837-26750856 MS.gene82362:intron 45.0%
!! CCTTCTATTGATTCATCCCC+AGG + chr4.2:26751615-26751634 None:intergenic 45.0%
!! CTCCTTTGTTGTTGCGGTTT+CGG - chr4.2:26750192-26750211 MS.gene82362:CDS 45.0%
!! GCACGCTTTGAAAAGAGATC+AGG - chr4.2:26751696-26751715 MS.gene82362:CDS 45.0%
!! GGCTTGAGGTACTGCTTATA+TGG - chr4.2:26750851-26750870 MS.gene82362:intron 45.0%
!! GTGGAAGCCTTGTTTCTTTG+TGG - chr4.2:26751310-26751329 MS.gene82362:intron 45.0%
AAGAACAAGCACGCCTGCAT+AGG + chr4.2:26750923-26750942 None:intergenic 50.0%
ACGTATAACGAAGGACGGTC+AGG - chr4.2:26750810-26750829 MS.gene82362:intron 50.0%
ACTCTCAGGTCCTTATGCTG+AGG - chr4.2:26750106-26750125 MS.gene82362:intron 50.0%
AGCCGAAACCGCAACAACAA+AGG + chr4.2:26750197-26750216 None:intergenic 50.0%
ATTATGCTCAGCCTCTCTCC+AGG - chr4.2:26751665-26751684 MS.gene82362:CDS 50.0%
CATTGGACAAGGTTGCTTGC+TGG - chr4.2:26748740-26748759 MS.gene82362:intron 50.0%
CTAAGTCCATATCCCCATGC+AGG + chr4.2:26750766-26750785 None:intergenic 50.0%
GATGGAGCTAAGCAATGGAC+TGG - chr4.2:26751108-26751127 MS.gene82362:intron 50.0%
GCCTAATCCTCCATTCCCAA+GGG + chr4.2:26750698-26750717 None:intergenic 50.0%
GGACTCCCTTCCAGATAAAG+TGG - chr4.2:26751734-26751753 MS.gene82362:CDS 50.0%
GTCCATTGCTTAGCTCCATC+TGG + chr4.2:26751108-26751127 None:intergenic 50.0%
TATAACGAAGGACGGTCAGG+AGG - chr4.2:26750813-26750832 MS.gene82362:intron 50.0%
TGCCTGCAGGTTGTTGAGAA+TGG + chr4.2:26748555-26748574 None:intergenic 50.0%
TTCCTCAGAGCCTCAGCATA+AGG + chr4.2:26750119-26750138 None:intergenic 50.0%
TTGGGAATGGAGGATTAGGC+CGG - chr4.2:26750698-26750717 MS.gene82362:intron 50.0%
AGGTGAGCTTGAATGCCTGC+AGG + chr4.2:26748568-26748587 None:intergenic 55.0%
GCCCTTGGGAATGGAGGATT+AGG - chr4.2:26750694-26750713 MS.gene82362:intron 55.0%
GGCCAGATGGAGCTAAGCAA+TGG - chr4.2:26751103-26751122 MS.gene82362:intron 55.0%
GGCCTAATCCTCCATTCCCA+AGG + chr4.2:26750699-26750718 None:intergenic 55.0%
GTCCTTATGCTGAGGCTCTG+AGG - chr4.2:26750114-26750133 MS.gene82362:intron 55.0%
TGTTGCCAGCGACAAAGCAG+CGG - chr4.2:26748701-26748720 MS.gene82362:intron 55.0%
!! GCTGAGGCTCTGAGGAAACT+GGG - chr4.2:26750122-26750141 MS.gene82362:intron 55.0%
!! GGAGCTAAGCAATGGACTGG+AGG - chr4.2:26751111-26751130 MS.gene82362:intron 55.0%
!! TGCTGAGGCTCTGAGGAAAC+TGG - chr4.2:26750121-26750140 MS.gene82362:intron 55.0%
AGGAGCCAGATGCAGCCCTT+GGG - chr4.2:26750680-26750699 MS.gene82362:intron 60.0%
CCAGATGCAGCCCTTGGGAA+TGG - chr4.2:26750685-26750704 MS.gene82362:intron 60.0%
CCATTCCCAAGGGCTGCATC+TGG + chr4.2:26750688-26750707 None:intergenic 60.0%
GATGCAGCCCTTGGGAATGG+AGG - chr4.2:26750688-26750707 MS.gene82362:intron 60.0%
! CAGTTCCGCTGCTTTGTCGC+TGG + chr4.2:26748709-26748728 None:intergenic 60.0%
CAGGAGCCAGATGCAGCCCT+TGG - chr4.2:26750679-26750698 MS.gene82362:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 26748540 26751758 26748540 ID=MS.gene82362
chr4.2 mRNA 26748540 26751758 26748540 ID=MS.gene82362.t1;Parent=MS.gene82362
chr4.2 exon 26751548 26751758 26751548 ID=MS.gene82362.t1.exon1;Parent=MS.gene82362.t1
chr4.2 CDS 26751548 26751758 26751548 ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1
chr4.2 exon 26750319 26750551 26750319 ID=MS.gene82362.t1.exon2;Parent=MS.gene82362.t1
chr4.2 CDS 26750319 26750551 26750319 ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1
chr4.2 exon 26750126 26750227 26750126 ID=MS.gene82362.t1.exon3;Parent=MS.gene82362.t1
chr4.2 CDS 26750126 26750227 26750126 ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1
chr4.2 exon 26749440 26749616 26749440 ID=MS.gene82362.t1.exon4;Parent=MS.gene82362.t1
chr4.2 CDS 26749440 26749616 26749440 ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1
chr4.2 exon 26748993 26749268 26748993 ID=MS.gene82362.t1.exon5;Parent=MS.gene82362.t1
chr4.2 CDS 26748993 26749268 26748993 ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1
chr4.2 exon 26748540 26748704 26748540 ID=MS.gene82362.t1.exon6;Parent=MS.gene82362.t1
chr4.2 CDS 26748540 26748704 26748540 ID=cds.MS.gene82362.t1;Parent=MS.gene82362.t1
Gene Sequence

>MS.gene82362

ATGTCTGCTCTACCATTCTCAACAACCTGCAGGCATTCAAGCTCACCTTTACATTCCCATTCCAAATCAAACATTTGGCAGCGACAAAACAACATTTGGCATTTGTTTGTCATCACAAAGTCAAATTCCAGAAGAGCAATTAGAAAGCTCTATGTGAAGAATGTTGCCAGCGACAAAGCAGCGGAACTGAAAGAACGACTCATTGGACAAGGTTGCTTGCTGGCATTTTCTCTTGTTTTGTGATTCTTTCTTCACTCCACTTCTTTACATTCTAATATATTATTCAGGATATTCATGTTTATAATTTAAATAGTTATATTTTTTTCAGTGAGCCTTGCAAGAGTTTCAGTTTGATGGAAATTTTGCTGGGTTTAATTGGTTACTAGTGCATTTTTTGGAAGGTTCTCAAAAGTAAGGAGTGGGAACCATGGTTTTATGTTAGATTTATATTGAGATAAACTGTCAATGCACATTATAGACGTTGGCTGATTTAGATAGTAGCTTTCTTAAGGTGTGCAGTATAGGCATCGTAACTTATATTGCCACAGGAAGGATGTCACTTAATATCTTTCCATGTAAATTTGGATTAATGGAATCTAGTTGAGGAAATAAAGATTAGTGATTATGGATCATCTCTTGTTTATTAAATCTGAGCTAATATGGCTTATCTATTTATCCCTTTGAAGTTTGTTGGAGGAAATGTAATAACTAAATACGGGAATGTAAAATACATTTCTCCATATTTTTAAAGTTTCAATGTCATAAACATTATATTTTAATGAATTTCGTTTGAAGGTGATGAATCATGATATTAATCTGACTGTTCTAGACTAGTTCGTAGTTGCTAGTTAGTATTGACTATTGAGTTACTCTTTCCCCTAAGACTTGCCTTTATATAAATCAAGTTTCCTTGAATCGTAATGGAACTAATGACAAAACCTCGTAATAGATTGACAATTTTGATTTATTTATTTATTTATTTATTCAGTTAGCAAAAGTAGAAACACATTTAAGCAATATCATAGCTAATACAACAGTGTTCTCTTGAAGTTATAAGGATATTCTAGATTTTTTTTCTTCATATATATATTTTTATATCGAACTCTAAAATCCAAGATTTTTTAGTATTATATCTTACAATAATGTTTTTTTTTTCTTCTGCAAATATGGTCCTAAATATTAATTCCTTATTGGTTAACACTTGCAGGCACCACTTCAAATGAATTCGTTGCAGATTCTGCATCTGTAGCTTCAAGCATAAAATATCATGCTGAGTTCACCACATCTTTTTCTCCTGAGAAATTTGAGCCCAGTAAGGCTTACTTTGCAACTGCAGAGAGTGTCCGTGATTCCCTTATCATAAATTGGAATGCAACATATGAATATTATGAGAGGGTTAATGTTAAGCAAGCTTATTACATGTCTATGGAGTATCTACAGGTTCATATTGGGTTTCCTTTATGAAACACGGGTCATTTTCTTTGCAAATGATTATTAATTTTCATTCCTACATTTTTTCCCAATTGTGAAGGGTAGGGCATTGTTAAATGCAATTGGGAATTTACAACTCTCAGGTCCTTATGCTGAGGCTCTGAGGAAACTGGGTTACAATTTAGAGGATGTGGCTAATCAGGTTTTTTCCTACTATTGTTCTCCTTTGTTGTTGCGGTTTCGGCTTCTGTTAGAAACTTTTACTCTTGTTACAATTTCTGTTTATCAAATAGTCCTCCTGGTAGCATGTAACAATAAGTTGAACTGGACTAATCCCTTTCTGTCCATTTCACAAAATTGTTATCTGTCATCTTGAGGATGCCAAATATTATAGTACAATGTATCTCTTATAGGCTTTCTATTGACAACAAAGATTAGGTCCATATTTGAACCAAGATTGTTACATGTTTGTTTAATGGAAAAAAGTGAGAATATTGTTAGGAAACAAGCAAGCATTCCTTCAAAAAAAAAAAAAAAGCAAGCATGTTTAAGAGTAAAATGTCTTCATTCGTGTGGAAACATACTAATGAAGGACCAAGAAAAACTACAAGAAAAACACAAACAGTTCACGAATGAAATGATAGTAATATGGATAGATTGCAAAGAATTAATCTGAGCATATTTAAAAGCAAACTCACATACAATTCACAGGAGCCAGATGCAGCCCTTGGGAATGGAGGATTAGGCCGGCTTGCTTCTTGCTTTCTAGACTCCTTGGCAACACTGAATTACCCTGCATGGGGATATGGACTTAGATACAGGTATGGTTTATTCAAACAACGTATAACGAAGGACGGTCAGGAGGAAGTTGCTGAAAACTGGCTTGAGGTACTGCTTATATGGATATTCGATAATTATCAATTGTAAGCCAATTTTCATATTATTGCTGCCTATGCAGGCGTGCTTGTTCTTTTAATTGTTCTTTCTTCTATCACTCTTTTTGGAAGCTCTGTAAGTTCTTCTGCAGAGATATTAACTGACTGACGTGTCTATTTATAGATGGGAAATCCCTGGGAAATTCAGAGAAACGATGTCTCTTATCCAGTTAGATTCTATGGAGAAGTTATTTCAGGGCCAGATGGAGCTAAGCAATGGACTGGAGGAGAAAGTATTTTGGCCGTTGCTTATGATGTTCCAATACCTGGATACAAAACTAGAACCACCATAAACTTGCGATTGTGGTCCACTAAAGTTTCAACTAAAGAATTTGATTTGAAGGCTTTCAATACTGGGGATCATGCCAAAGCATACGCTGTCATGAAGAATGCAGAGAAGGTTTGTGGAAGCCTTGTTTCTTTGTGGTCCTTACACCTGCATCTAAGTTCAGTGTCTTCTTCAAAAGTACTTTCTGGAAGATTCAAAATATCCACTACTGAGCTTAGAATGTATTGCATGAATATGACGAAAACCTTATTCTCTTGCTTCAAATTGTAGTGGTACCTATATCTCAGATATAAATCATCGGAGAAGTTTTTTTTCATTTATGGAAAGTAAATTCAGTTTACTGTTTTCATGAATCATTTGTGATGCAAATTTATTTCTTTTAATATTTGTTGTAATCAGATCTGTTACATTCTATACCCTGGGGATGAATCAATAGAAGGCAAGACTTTACGACTAAAGCAACAATATACATTATGCTCAGCCTCTCTCCAGGATATCATTGCACGCTTTGAAAAGAGATCAGGAATGACGGTAAATTGGGACTCCCTTCCAGATAAAGTGGTG

Protein sequence

>MS.gene82362.t1

MSALPFSTTCRHSSSPLHSHSKSNIWQRQNNIWHLFVITKSNSRRAIRKLYVKNVASDKAAELKERLIGQGTTSNEFVADSASVASSIKYHAEFTTSFSPEKFEPSKAYFATAESVRDSLIINWNATYEYYERVNVKQAYYMSMEYLQGRALLNAIGNLQLSGPYAEALRKLGYNLEDVANQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYRYGLFKQRITKDGQEEVAENWLEMGNPWEIQRNDVSYPVRFYGEVISGPDGAKQWTGGESILAVAYDVPIPGYKTRTTINLRLWSTKVSTKEFDLKAFNTGDHAKAYAVMKNAEKICYILYPGDESIEGKTLRLKQQYTLCSASLQDIIARFEKRSGMTVNWDSLPDKVV