Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82408.t1 | RHN62068.1 | 93.2 | 590 | 40 | 0 | 81 | 670 | 1 | 590 | 5.00E-270 | 940.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82408.t1 | Q8GYM6 | 62.8 | 465 | 139 | 8 | 81 | 537 | 1 | 439 | 1.1e-143 | 511.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82408.t1 | A0A396IBC3 | 93.2 | 590 | 40 | 0 | 81 | 670 | 1 | 590 | 3.6e-270 | 940.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049786 | MS.gene82408 | 0.830514 | 2.81E-55 | -1.69E-46 |
| MS.gene050114 | MS.gene82408 | 0.813275 | 2.78E-51 | -1.69E-46 |
| MS.gene053381 | MS.gene82408 | 0.832437 | 9.46E-56 | -1.69E-46 |
| MS.gene055603 | MS.gene82408 | 0.814069 | 1.86E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene82408 | 0.824199 | 9.19E-54 | -1.69E-46 |
| MS.gene060637 | MS.gene82408 | 0.81809 | 2.35E-52 | -1.69E-46 |
| MS.gene060870 | MS.gene82408 | 0.810695 | 1.01E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82408.t1 | MTR_4g083690 | 90.169 | 590 | 18 | 2 | 81 | 670 | 1 | 550 | 0.0 | 1028 |
| MS.gene82408.t1 | MTR_7g094070 | 59.586 | 532 | 124 | 6 | 111 | 633 | 1 | 450 | 0.0 | 592 |
| MS.gene82408.t1 | MTR_2g068690 | 55.118 | 635 | 199 | 17 | 81 | 670 | 1 | 594 | 0.0 | 591 |
| MS.gene82408.t1 | MTR_7g094060 | 49.455 | 459 | 125 | 10 | 229 | 670 | 2 | 370 | 4.60e-108 | 332 |
| MS.gene82408.t1 | MTR_1g104820 | 52.137 | 234 | 110 | 1 | 115 | 348 | 141 | 372 | 2.09e-73 | 241 |
| MS.gene82408.t1 | MTR_1g104820 | 52.137 | 234 | 110 | 1 | 115 | 348 | 202 | 433 | 1.09e-72 | 241 |
| MS.gene82408.t1 | MTR_1g104820 | 49.721 | 179 | 90 | 0 | 115 | 293 | 141 | 319 | 1.74e-56 | 195 |
| MS.gene82408.t1 | MTR_1g104820 | 50.000 | 174 | 87 | 0 | 115 | 288 | 141 | 314 | 1.14e-55 | 192 |
| MS.gene82408.t1 | MTR_5g055170 | 32.932 | 249 | 159 | 5 | 110 | 357 | 5 | 246 | 1.37e-40 | 154 |
| MS.gene82408.t1 | MTR_5g010140 | 32.800 | 250 | 158 | 6 | 110 | 357 | 5 | 246 | 1.58e-39 | 151 |
| MS.gene82408.t1 | MTR_5g055170 | 30.964 | 197 | 129 | 4 | 162 | 357 | 1 | 191 | 1.38e-27 | 115 |
| MS.gene82408.t1 | MTR_7g055650 | 26.522 | 230 | 152 | 4 | 124 | 353 | 24 | 236 | 3.67e-20 | 90.9 |
| MS.gene82408.t1 | MTR_5g010140 | 33.913 | 115 | 70 | 3 | 243 | 357 | 31 | 139 | 2.03e-16 | 81.3 |
| MS.gene82408.t1 | MTR_7g055650 | 26.316 | 209 | 137 | 4 | 124 | 332 | 24 | 215 | 1.56e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82408.t1 | AT5G45190 | 55.354 | 607 | 187 | 14 | 81 | 662 | 1 | 548 | 0.0 | 593 |
| MS.gene82408.t1 | AT5G45190 | 53.883 | 618 | 190 | 15 | 81 | 662 | 1 | 559 | 0.0 | 576 |
| MS.gene82408.t1 | AT4G19600 | 54.714 | 594 | 180 | 12 | 81 | 666 | 1 | 513 | 0.0 | 568 |
| MS.gene82408.t1 | AT5G45190 | 50.704 | 497 | 162 | 13 | 191 | 662 | 1 | 439 | 9.96e-139 | 414 |
| MS.gene82408.t1 | AT4G19560 | 48.780 | 451 | 175 | 10 | 95 | 542 | 14 | 411 | 9.18e-115 | 352 |
| MS.gene82408.t1 | AT1G35440 | 50.607 | 247 | 113 | 2 | 114 | 358 | 7 | 246 | 1.74e-84 | 266 |
| MS.gene82408.t1 | AT1G27630 | 53.782 | 238 | 107 | 2 | 112 | 349 | 32 | 266 | 5.44e-84 | 267 |
| MS.gene82408.t1 | AT1G27630 | 53.712 | 229 | 103 | 2 | 112 | 340 | 32 | 257 | 2.08e-81 | 259 |
| MS.gene82408.t1 | AT4G19560 | 43.767 | 361 | 149 | 9 | 185 | 542 | 30 | 339 | 6.47e-67 | 225 |
| MS.gene82408.t1 | AT1G27630 | 49.457 | 184 | 90 | 2 | 166 | 349 | 1 | 181 | 2.75e-54 | 186 |
| MS.gene82408.t1 | AT1G27630 | 49.457 | 184 | 90 | 2 | 166 | 349 | 1 | 181 | 2.75e-54 | 186 |
| MS.gene82408.t1 | AT1G27630 | 49.457 | 184 | 90 | 2 | 166 | 349 | 1 | 181 | 2.75e-54 | 186 |
| MS.gene82408.t1 | AT1G27630 | 49.457 | 184 | 90 | 2 | 166 | 349 | 1 | 181 | 2.75e-54 | 186 |
| MS.gene82408.t1 | AT2G26430 | 33.200 | 250 | 157 | 6 | 110 | 357 | 5 | 246 | 2.47e-39 | 150 |
| MS.gene82408.t1 | AT2G26430 | 33.200 | 250 | 157 | 6 | 110 | 357 | 5 | 246 | 8.70e-37 | 140 |
| MS.gene82408.t1 | AT2G26430 | 31.313 | 198 | 127 | 5 | 162 | 357 | 1 | 191 | 3.71e-27 | 114 |
| MS.gene82408.t1 | AT2G26430 | 31.313 | 198 | 127 | 5 | 162 | 357 | 1 | 191 | 3.71e-27 | 114 |
| MS.gene82408.t1 | AT5G48630 | 26.009 | 223 | 148 | 4 | 131 | 353 | 31 | 236 | 8.20e-17 | 81.3 |
| MS.gene82408.t1 | AT5G48630 | 26.009 | 223 | 148 | 4 | 131 | 353 | 34 | 239 | 1.72e-16 | 80.5 |
| MS.gene82408.t1 | AT5G48640 | 25.248 | 202 | 134 | 2 | 151 | 352 | 3 | 187 | 2.84e-16 | 78.6 |
| MS.gene82408.t1 | AT5G48640 | 26.341 | 205 | 134 | 4 | 148 | 352 | 48 | 235 | 1.20e-14 | 74.7 |
| MS.gene82408.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 171 | 352 | 3 | 167 | 9.95e-12 | 64.7 |
| MS.gene82408.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 171 | 352 | 3 | 167 | 9.95e-12 | 64.7 |
| MS.gene82408.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 171 | 352 | 3 | 167 | 9.95e-12 | 64.7 |
Find 160 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAATCTTGATTGCTTCTT+TGG | 0.078252 | 4.4:+29322313 | None:intergenic |
| CTGACGGAAGCTTCACTTTC+AGG | 0.142810 | 4.4:+29323140 | None:intergenic |
| AGCAACATTGAACTTCTTTA+TGG | 0.142833 | 4.4:+29323374 | None:intergenic |
| TCAAGACGTTTCTTCGTTTC+TGG | 0.177305 | 4.4:+29321831 | None:intergenic |
| TTCGTTTCTGGTTGACTTGC+TGG | 0.211936 | 4.4:+29321843 | None:intergenic |
| ATGGCTGCGCGGCGCACATT+AGG | 0.242311 | 4.4:-29327704 | MS.gene82408:CDS |
| GATGGATTCAATGCAGAAAA+AGG | 0.264458 | 4.4:-29321927 | MS.gene82408:CDS |
| ACAAAGGAAGCTACAGAATT+AGG | 0.280120 | 4.4:-29322422 | MS.gene82408:CDS |
| TGTACATTCTTACAAGATTT+AGG | 0.291338 | 4.4:-29326501 | MS.gene82408:CDS |
| TGGCTGCGCGGCGCACATTA+GGG | 0.292329 | 4.4:-29327703 | MS.gene82408:CDS |
| GCCTCGACAAGGGGCTTATA+TGG | 0.299564 | 4.4:+29323396 | None:intergenic |
| GCGCGGCGCACATTAGGGTT+TGG | 0.301000 | 4.4:-29327698 | MS.gene82408:CDS |
| CTGCACTCCCATCATTGCTT+TGG | 0.304701 | 4.4:+29322561 | None:intergenic |
| TCAATCTTGATTGCTTCTTT+GGG | 0.317346 | 4.4:+29322314 | None:intergenic |
| GAATCGATGACAAAATATTA+TGG | 0.323728 | 4.4:+29326042 | None:intergenic |
| CGCGGCGCACATTAGGGTTT+GGG | 0.325377 | 4.4:-29327697 | MS.gene82408:CDS |
| GACAATAAAGAAAGATATAA+TGG | 0.332960 | 4.4:-29322096 | MS.gene82408:CDS |
| GGGTTAGTTGCACTGTTGAC+TGG | 0.342169 | 4.4:+29326718 | None:intergenic |
| GAAGCAGAAGGGGCTGCTGC+AGG | 0.353238 | 4.4:-29322713 | MS.gene82408:CDS |
| CCCGACAAAGATAAACTTGT+TGG | 0.366292 | 4.4:-29322467 | MS.gene82408:CDS |
| GAACTTGGCAGCAAGGAAAA+TGG | 0.372793 | 4.4:+29323162 | None:intergenic |
| CAATGATGGGAGTGCAGAAA+TGG | 0.380246 | 4.4:-29322555 | MS.gene82408:CDS |
| TAATTCTGTAGCTTCCTTTG+TGG | 0.380882 | 4.4:+29322424 | None:intergenic |
| CTTCAATGTTGGTCAAAATC+TGG | 0.381107 | 4.4:-29322366 | MS.gene82408:CDS |
| TCCAACAAGTTTATCTTTGT+CGG | 0.386957 | 4.4:+29322466 | None:intergenic |
| TTTATCCTCTGTGCAGCAGC+AGG | 0.390517 | 4.4:+29324615 | None:intergenic |
| CAGACACAAGTGCTGCCATA+TGG | 0.396129 | 4.4:+29326697 | None:intergenic |
| CCGCGCAGCCATCACCTTTG+CGG | 0.408629 | 4.4:+29327715 | None:intergenic |
| TATGATGTGGCTTAAATTGT+AGG | 0.409195 | 4.4:+29323197 | None:intergenic |
| GCTTCACTTCCTTGTGATTG+TGG | 0.410396 | 4.4:+29322731 | None:intergenic |
| TTCTGAGGTCTGAGAATCCC+TGG | 0.414945 | 4.4:+29322496 | None:intergenic |
| TGATGTCACCCCACGCCAAT+TGG | 0.422376 | 4.4:-29323089 | MS.gene82408:CDS |
| GCATGGAACTTTGTTAATGA+TGG | 0.427217 | 4.4:-29323330 | MS.gene82408:CDS |
| GAGGGTTGTACTTGCCACTT+TGG | 0.427992 | 4.4:-29323442 | MS.gene82408:CDS |
| CCAACAAGTTTATCTTTGTC+GGG | 0.428315 | 4.4:+29322467 | None:intergenic |
| AAGCAGAAGGGGCTGCTGCA+GGG | 0.429292 | 4.4:-29322712 | MS.gene82408:CDS |
| AGAGACTCCTCGTCCTCTTA+AGG | 0.429831 | 4.4:-29324679 | MS.gene82408:CDS |
| AAGCTTCACTTTCAGGAACT+TGG | 0.431818 | 4.4:+29323147 | None:intergenic |
| TCACCATGATCTTCATCATC+AGG | 0.433315 | 4.4:+29321975 | None:intergenic |
| CGTCAGACGGTGAGAAGGTC+TGG | 0.435777 | 4.4:-29323123 | MS.gene82408:CDS |
| GAGCGTCGGGACGGCCCACT+TGG | 0.441544 | 4.4:-29322344 | MS.gene82408:CDS |
| CATATGGCAGCACTTGTGTC+TGG | 0.444420 | 4.4:-29326696 | MS.gene82408:CDS |
| ACCTTGAGGAGGCTAGAGAC+AGG | 0.452830 | 4.4:-29321950 | MS.gene82408:CDS |
| ACCGAAAACCAAAGCAATGA+TGG | 0.455608 | 4.4:-29322569 | MS.gene82408:CDS |
| GACGATAAAGAAAGATGTAA+TGG | 0.462192 | 4.4:-29322237 | MS.gene82408:CDS |
| GGGAGCGAGAGCTGCTGCAA+GGG | 0.466897 | 4.4:-29322690 | MS.gene82408:CDS |
| CTCTCCATCTGATGTAGCTC+GGG | 0.468669 | 4.4:+29330690 | None:intergenic |
| GCCCAATCACCACAGTAAAT+CGG | 0.470110 | 4.4:-29327738 | MS.gene82408:intron |
| GATGGCACCAACCCTCCAAT+TGG | 0.470978 | 4.4:+29323074 | None:intergenic |
| ATGAGAATAACATCCTTAAG+AGG | 0.474735 | 4.4:+29324666 | None:intergenic |
| AGCAGAAGGGGCTGCTGCAG+GGG | 0.477059 | 4.4:-29322711 | MS.gene82408:CDS |
| CATCTGATGTAGCTCGGGAT+GGG | 0.477381 | 4.4:+29330695 | None:intergenic |
| ACAGGCGTGGTGGCATGGGT+TGG | 0.482586 | 4.4:-29330779 | None:intergenic |
| CGGTGAGAAGGTCTGGTGGC+AGG | 0.483751 | 4.4:-29323116 | MS.gene82408:CDS |
| CCTCTCCATCTGATGTAGCT+CGG | 0.488469 | 4.4:+29330689 | None:intergenic |
| ATCCTTCCCATCCCCTTACT+CGG | 0.488602 | 4.4:+29321785 | None:intergenic |
| ACCAACCCTCCAATTGGCGT+GGG | 0.488824 | 4.4:+29323080 | None:intergenic |
| AAGAAGAAGCATTGGGTCGC+TGG | 0.490936 | 4.4:-29326614 | MS.gene82408:CDS |
| TGGTCAAAATCTGGAGCGTC+GGG | 0.493894 | 4.4:-29322357 | MS.gene82408:CDS |
| CCATCTGATGTAGCTCGGGA+TGG | 0.494508 | 4.4:+29330694 | None:intergenic |
| AATGCTCCGTCAAGAAAAGA+TGG | 0.494895 | 4.4:-29326564 | MS.gene82408:CDS |
| CATATCCGGTGAACAATCCT+TGG | 0.497561 | 4.4:-29330731 | MS.gene82408:CDS |
| GCAGAAGGGGCTGCTGCAGG+GGG | 0.499172 | 4.4:-29322710 | MS.gene82408:CDS |
| GCTTGAAGATGGAGTAGAGT+TGG | 0.501501 | 4.4:-29322048 | MS.gene82408:CDS |
| AAGCCACATCATATTGCGGC+AGG | 0.507122 | 4.4:-29323187 | MS.gene82408:CDS |
| CTTTCAGGAACTTGGCAGCA+AGG | 0.508345 | 4.4:+29323155 | None:intergenic |
| AGATAAGCAAGAAGAAGCAT+TGG | 0.512627 | 4.4:-29326622 | MS.gene82408:CDS |
| ATTGAGAGGGAGCTTGAAGA+TGG | 0.513193 | 4.4:-29322059 | MS.gene82408:CDS |
| ATTGAGAGGGAGCTTGAAGA+TGG | 0.513193 | 4.4:-29322200 | MS.gene82408:CDS |
| AACAGTGCAACTAACCCATA+TGG | 0.513524 | 4.4:-29326712 | MS.gene82408:CDS |
| TTCTTTATGGCCTCGACAAG+GGG | 0.513974 | 4.4:+29323387 | None:intergenic |
| AGACACAAGTGCTGCCATAT+GGG | 0.513981 | 4.4:+29326698 | None:intergenic |
| TGGGGCTCGTACTGTGGCCA+AGG | 0.518562 | 4.4:+29330714 | None:intergenic |
| TCGGGATGGGGCTCGTACTG+TGG | 0.520214 | 4.4:+29330708 | None:intergenic |
| AAAGAAAGATGTAATGGATG+AGG | 0.521411 | 4.4:-29322231 | MS.gene82408:CDS |
| ACAAGATGGACTCGGAAACC+AGG | 0.523113 | 4.4:-29322514 | MS.gene82408:CDS |
| CCCTGTCTCTAGCCTCCTCA+AGG | 0.523922 | 4.4:+29321949 | None:intergenic |
| TCCTGCGATGAGTGAAGAGC+AGG | 0.524474 | 4.4:-29322666 | MS.gene82408:CDS |
| CAAGGGGCTTATATGGATGT+TGG | 0.524723 | 4.4:+29323403 | None:intergenic |
| CATGGAACTTTGTTAATGAT+GGG | 0.529596 | 4.4:-29323329 | MS.gene82408:intron |
| TGTCACCCCACGCCAATTGG+AGG | 0.530719 | 4.4:-29323086 | MS.gene82408:CDS |
| GAACAATCGCAAGAGAAAGA+AGG | 0.530737 | 4.4:-29321874 | MS.gene82408:CDS |
| GGGGAGCGAGAGCTGCTGCA+AGG | 0.533292 | 4.4:-29322691 | MS.gene82408:CDS |
| ATCTGATGTAGCTCGGGATG+GGG | 0.535415 | 4.4:+29330696 | None:intergenic |
| AATCAAGATTGACAAAGATA+AGG | 0.536877 | 4.4:-29322303 | MS.gene82408:CDS |
| CCATCCCGAGCTACATCAGA+TGG | 0.537699 | 4.4:-29330694 | MS.gene82408:CDS |
| CACCAACCCTCCAATTGGCG+TGG | 0.539896 | 4.4:+29323079 | None:intergenic |
| TTGGTCAAAATCTGGAGCGT+CGG | 0.541488 | 4.4:-29322358 | MS.gene82408:CDS |
| GGTTAGTTGCACTGTTGACT+GGG | 0.542770 | 4.4:+29326719 | None:intergenic |
| TAAATCGGCCGCAAAGGTGA+TGG | 0.544210 | 4.4:-29327723 | MS.gene82408:CDS |
| GGAGCGAGAGCTGCTGCAAG+GGG | 0.545688 | 4.4:-29322689 | MS.gene82408:CDS |
| GCCTGCTCTTCACTCATCGC+AGG | 0.545877 | 4.4:+29322665 | None:intergenic |
| AATGATGGGAGTGCAGAAAT+GGG | 0.546932 | 4.4:-29322554 | MS.gene82408:CDS |
| TGATGACGAGAGAACATATC+CGG | 0.549123 | 4.4:-29330745 | MS.gene82408:CDS |
| AACAAGTCTAGCTTCAATGT+TGG | 0.549540 | 4.4:-29322377 | MS.gene82408:CDS |
| CCACAGTAAATCGGCCGCAA+AGG | 0.550831 | 4.4:-29327729 | MS.gene82408:intron |
| AGAAGTTAGCAATCAAATGT+TGG | 0.552225 | 4.4:-29322777 | MS.gene82408:CDS |
| GATAAGCAAGAAGAAGCATT+GGG | 0.552512 | 4.4:-29326621 | MS.gene82408:CDS |
| AGTTCCATGCAACTTGTGCA+AGG | 0.554121 | 4.4:+29323343 | None:intergenic |
| CCTGACCCGAGTGCATAAAA+CGG | 0.556406 | 4.4:+29327669 | None:intergenic |
| TCTGGAGAGTTGCCACATCA+TGG | 0.557018 | 4.4:-29326678 | MS.gene82408:CDS |
| TTTCCACAGATGAGCACTGA+GGG | 0.558715 | 4.4:+29322615 | None:intergenic |
| CTTCTTTATGGCCTCGACAA+GGG | 0.558922 | 4.4:+29323386 | None:intergenic |
| CACAAGGAAGTGAAGCAGAA+GGG | 0.559027 | 4.4:-29322724 | MS.gene82408:CDS |
| AACAATCGCAAGAGAAAGAA+GGG | 0.561015 | 4.4:-29321873 | MS.gene82408:CDS |
| GATTGACAAAGATAAGGTAA+AGG | 0.564547 | 4.4:-29322297 | MS.gene82408:CDS |
| ACTTCTTTATGGCCTCGACA+AGG | 0.571121 | 4.4:+29323385 | None:intergenic |
| TTATCCTCTGTGCAGCAGCA+GGG | 0.572300 | 4.4:+29324616 | None:intergenic |
| ACGCCCTTGCACAAGTTGCA+TGG | 0.578134 | 4.4:-29323347 | MS.gene82408:CDS |
| AGAGAAACTTGTTGCCACAA+AGG | 0.579166 | 4.4:-29322438 | MS.gene82408:CDS |
| CCGAAAACCAAAGCAATGAT+GGG | 0.583069 | 4.4:-29322568 | MS.gene82408:CDS |
| CCGTCAGATGCTCCATGATG+TGG | 0.583282 | 4.4:+29326666 | None:intergenic |
| AGGAAGCTACAGAATTAGGA+AGG | 0.595687 | 4.4:-29322418 | MS.gene82408:CDS |
| AAAGTGAAGCTTCCGTCAGA+CGG | 0.595709 | 4.4:-29323136 | MS.gene82408:CDS |
| CGAGCTACATCAGATGGAGA+GGG | 0.597739 | 4.4:-29330688 | MS.gene82408:CDS |
| CGAGGATGATCTCATTGAGA+GGG | 0.600498 | 4.4:-29322072 | MS.gene82408:CDS |
| TCACAAGGAAGTGAAGCAGA+AGG | 0.601746 | 4.4:-29322725 | MS.gene82408:CDS |
| CAAAATCTGGAGCGTCGGGA+CGG | 0.603883 | 4.4:-29322353 | MS.gene82408:CDS |
| TCCATATAAGCCCCTTGTCG+AGG | 0.604206 | 4.4:-29323397 | MS.gene82408:CDS |
| GCTTCCGTCAGACGGTGAGA+AGG | 0.605256 | 4.4:-29323128 | MS.gene82408:CDS |
| GTCACCCCACGCCAATTGGA+GGG | 0.605796 | 4.4:-29323085 | MS.gene82408:intron |
| ATTCAAGTCAAAAGCCAAAG+TGG | 0.607668 | 4.4:+29323428 | None:intergenic |
| ACAAGGAAGTGAAGCAGAAG+GGG | 0.610265 | 4.4:-29322723 | MS.gene82408:CDS |
| CTCATGCAAAGAATGACCGA+AGG | 0.612140 | 4.4:-29326006 | MS.gene82408:CDS |
| CCACATCATGGAGCATCTGA+CGG | 0.614623 | 4.4:-29326666 | MS.gene82408:CDS |
| TCTTTGGGTGACTGACCAAG+TGG | 0.615707 | 4.4:+29322329 | None:intergenic |
| TGAGGATGATCTCATTGAGA+GGG | 0.615735 | 4.4:-29322213 | MS.gene82408:CDS |
| TGACATTACTGATCACAAGA+TGG | 0.617081 | 4.4:-29322528 | MS.gene82408:CDS |
| AGATCATGGTGAGGACCTTG+AGG | 0.617441 | 4.4:-29321964 | MS.gene82408:CDS |
| TGTGGCCAAGGATTGTTCAC+CGG | 0.619078 | 4.4:+29330726 | None:intergenic |
| TCCACAGATGAGCACTGAGG+GGG | 0.619491 | 4.4:+29322617 | None:intergenic |
| GCTGTTGCTATAGTTACTTG+AGG | 0.621138 | 4.4:+29326064 | None:intergenic |
| CCTTGAGGAGGCTAGAGACA+GGG | 0.621815 | 4.4:-29321949 | MS.gene82408:CDS |
| CAGACCTTCTCACCGTCTGA+CGG | 0.622614 | 4.4:+29323124 | None:intergenic |
| CTTTGGGTGACTGACCAAGT+GGG | 0.622686 | 4.4:+29322330 | None:intergenic |
| CCGAGCTACATCAGATGGAG+AGG | 0.623746 | 4.4:-29330689 | MS.gene82408:CDS |
| GTTCCATGCAACTTGTGCAA+GGG | 0.625785 | 4.4:+29323344 | None:intergenic |
| ATGAGGATGATCTCATTGAG+AGG | 0.630170 | 4.4:-29322214 | MS.gene82408:CDS |
| AAGCCTGATGATGAAGATCA+TGG | 0.631489 | 4.4:-29321978 | MS.gene82408:CDS |
| ATAACATCCTTAAGAGGACG+AGG | 0.631649 | 4.4:+29324672 | None:intergenic |
| ACGAGGATGATCTCATTGAG+AGG | 0.632466 | 4.4:-29322073 | MS.gene82408:CDS |
| CAAGATGGACTCGGAAACCA+GGG | 0.633256 | 4.4:-29322513 | MS.gene82408:CDS |
| ATTTAAGCCACATCATATTG+CGG | 0.635161 | 4.4:-29323191 | MS.gene82408:CDS |
| GAGGAGGCTAGAGACAGGGA+TGG | 0.636161 | 4.4:-29321945 | MS.gene82408:CDS |
| ATGTTCTCTCGTCATCAGCA+CGG | 0.636201 | 4.4:+29330751 | None:intergenic |
| TACTGATCACAAGATGGACT+CGG | 0.641859 | 4.4:-29322522 | MS.gene82408:CDS |
| CCGCAAAGGTGATGGCTGCG+CGG | 0.643173 | 4.4:-29327715 | MS.gene82408:CDS |
| TGCACAGAGGATAAAACAGA+AGG | 0.652187 | 4.4:-29324607 | MS.gene82408:intron |
| AAAGAAAGATATAATGGACG+AGG | 0.653196 | 4.4:-29322090 | MS.gene82408:CDS |
| AGCTACATCAGATGGAGAGG+GGG | 0.657443 | 4.4:-29330686 | MS.gene82408:intron |
| TCATGCAAAGAATGACCGAA+GGG | 0.662631 | 4.4:-29326005 | MS.gene82408:intron |
| CCAACCCTCCAATTGGCGTG+GGG | 0.665875 | 4.4:+29323081 | None:intergenic |
| TCATGGTGAGGACCTTGAGG+AGG | 0.679281 | 4.4:-29321961 | MS.gene82408:CDS |
| GAGCTACATCAGATGGAGAG+GGG | 0.681917 | 4.4:-29330687 | MS.gene82408:CDS |
| TTCCACAGATGAGCACTGAG+GGG | 0.694472 | 4.4:+29322616 | None:intergenic |
| AATAGAATTCCACAATCACA+AGG | 0.696079 | 4.4:-29322740 | MS.gene82408:CDS |
| TGATGATGAAGATCATGGTG+AGG | 0.696108 | 4.4:-29321973 | MS.gene82408:CDS |
| CAGACGGTGAGAAGGTCTGG+TGG | 0.696264 | 4.4:-29323120 | MS.gene82408:CDS |
| GCACCTGCCGCAATATGATG+TGG | 0.706575 | 4.4:+29323184 | None:intergenic |
| AAGACCCTGCTGCTGCACAG+AGG | 0.732068 | 4.4:-29324620 | MS.gene82408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29321800 | 29330787 | 29321800 | ID=MS.gene82408 |
| chr4.4 | mRNA | 29321800 | 29330787 | 29321800 | ID=MS.gene82408.t1;Parent=MS.gene82408 |
| chr4.4 | exon | 29330687 | 29330787 | 29330687 | ID=MS.gene82408.t1.exon1;Parent=MS.gene82408.t1 |
| chr4.4 | CDS | 29330687 | 29330787 | 29330687 | ID=cds.MS.gene82408.t1;Parent=MS.gene82408.t1 |
| chr4.4 | exon | 29327647 | 29327745 | 29327647 | ID=MS.gene82408.t1.exon2;Parent=MS.gene82408.t1 |
| chr4.4 | CDS | 29327647 | 29327745 | 29327647 | ID=cds.MS.gene82408.t1;Parent=MS.gene82408.t1 |
| chr4.4 | exon | 29326486 | 29326755 | 29326486 | ID=MS.gene82408.t1.exon3;Parent=MS.gene82408.t1 |
| chr4.4 | CDS | 29326486 | 29326755 | 29326486 | ID=cds.MS.gene82408.t1;Parent=MS.gene82408.t1 |
| chr4.4 | exon | 29326006 | 29326087 | 29326006 | ID=MS.gene82408.t1.exon4;Parent=MS.gene82408.t1 |
| chr4.4 | CDS | 29326006 | 29326087 | 29326006 | ID=cds.MS.gene82408.t1;Parent=MS.gene82408.t1 |
| chr4.4 | exon | 29324608 | 29324742 | 29324608 | ID=MS.gene82408.t1.exon5;Parent=MS.gene82408.t1 |
| chr4.4 | CDS | 29324608 | 29324742 | 29324608 | ID=cds.MS.gene82408.t1;Parent=MS.gene82408.t1 |
| chr4.4 | exon | 29323330 | 29323505 | 29323330 | ID=MS.gene82408.t1.exon6;Parent=MS.gene82408.t1 |
| chr4.4 | CDS | 29323330 | 29323505 | 29323330 | ID=cds.MS.gene82408.t1;Parent=MS.gene82408.t1 |
| chr4.4 | exon | 29323086 | 29323237 | 29323086 | ID=MS.gene82408.t1.exon7;Parent=MS.gene82408.t1 |
| chr4.4 | CDS | 29323086 | 29323237 | 29323086 | ID=cds.MS.gene82408.t1;Parent=MS.gene82408.t1 |
| chr4.4 | exon | 29321800 | 29322797 | 29321800 | ID=MS.gene82408.t1.exon8;Parent=MS.gene82408.t1 |
| chr4.4 | CDS | 29321800 | 29322797 | 29321800 | ID=cds.MS.gene82408.t1;Parent=MS.gene82408.t1 |
| Gene Sequence |
| Protein sequence |
