Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82937.t1 | XP_013450804.1 | 96.7 | 448 | 15 | 0 | 1 | 448 | 1 | 448 | 1.50E-257 | 898.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82937.t1 | Q04903 | 83.7 | 448 | 44 | 1 | 1 | 448 | 1 | 419 | 1.2e-223 | 776.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82937.t1 | A0A072U531 | 96.7 | 448 | 15 | 0 | 1 | 448 | 1 | 448 | 1.1e-257 | 898.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049808 | MS.gene82937 | 0.80272 | 4.91E-49 | -1.69E-46 |
MS.gene050955 | MS.gene82937 | 0.809114 | 2.22E-50 | -1.69E-46 |
MS.gene051241 | MS.gene82937 | 0.814649 | 1.38E-51 | -1.69E-46 |
MS.gene057705 | MS.gene82937 | 0.814756 | 1.31E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82937.t1 | MTR_6g007165 | 96.652 | 448 | 15 | 0 | 1 | 448 | 1 | 448 | 0.0 | 909 |
MS.gene82937.t1 | MTR_1g111160 | 30.980 | 255 | 171 | 3 | 44 | 297 | 1 | 251 | 5.96e-33 | 125 |
MS.gene82937.t1 | MTR_7g024540 | 31.845 | 336 | 175 | 14 | 47 | 335 | 15 | 343 | 6.05e-33 | 128 |
MS.gene82937.t1 | MTR_1g111160 | 30.980 | 255 | 171 | 3 | 44 | 297 | 1 | 251 | 8.40e-33 | 126 |
MS.gene82937.t1 | MTR_1g111160 | 30.980 | 255 | 171 | 3 | 44 | 297 | 1 | 251 | 2.07e-32 | 126 |
MS.gene82937.t1 | MTR_1g111160 | 31.349 | 252 | 168 | 3 | 44 | 294 | 1 | 248 | 9.73e-32 | 122 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82937.t1 | AT5G40280 | 58.447 | 438 | 181 | 1 | 8 | 445 | 42 | 478 | 7.92e-179 | 509 |
MS.gene82937.t1 | AT5G40280 | 54.468 | 470 | 181 | 2 | 8 | 445 | 42 | 510 | 9.67e-172 | 492 |
MS.gene82937.t1 | AT3G12070 | 33.333 | 231 | 149 | 4 | 68 | 297 | 29 | 255 | 7.97e-33 | 127 |
MS.gene82937.t1 | AT3G12070 | 33.333 | 231 | 149 | 4 | 68 | 297 | 29 | 255 | 7.97e-33 | 127 |
MS.gene82937.t1 | AT3G12070 | 33.333 | 231 | 149 | 4 | 68 | 297 | 29 | 255 | 7.97e-33 | 127 |
MS.gene82937.t1 | AT5G12210 | 30.189 | 265 | 175 | 4 | 36 | 297 | 1 | 258 | 9.10e-33 | 126 |
MS.gene82937.t1 | AT2G39550 | 31.014 | 345 | 184 | 14 | 37 | 334 | 25 | 362 | 2.77e-32 | 126 |
MS.gene82937.t1 | AT5G12210 | 30.451 | 266 | 174 | 5 | 36 | 297 | 1 | 259 | 1.08e-31 | 124 |
MS.gene82937.t1 | AT3G12070 | 34.804 | 204 | 128 | 4 | 68 | 270 | 29 | 228 | 1.10e-27 | 110 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAAGTATTCTAAACATTT+TGG | 0.155977 | 6.2:+2631112 | MS.gene82937:CDS |
AGGTAAGGAGTGTGGATTTC+AGG | 0.186356 | 6.2:+2632194 | MS.gene82937:CDS |
TCCTCTCTTTAATGTTGTTT+TGG | 0.194255 | 6.2:+2633149 | MS.gene82937:CDS |
GTCAATACTCTTGTTACTTT+GGG | 0.243540 | 6.2:+2629626 | MS.gene82937:CDS |
GTCGACCGTGGCTGTGTTAC+TGG | 0.250941 | 6.2:+2627518 | MS.gene82937:intron |
GATCCAAATGGTGGATTTGC+TGG | 0.264529 | 6.2:+2628981 | MS.gene82937:CDS |
AAGCTTTGGCATCAATTAAT+AGG | 0.280924 | 6.2:+2629657 | MS.gene82937:CDS |
TTAGGTAATGGTGGAGAATC+TGG | 0.311383 | 6.2:-2633084 | None:intergenic |
ATCTGATGCGCCTGACAAAA+AGG | 0.320622 | 6.2:+2632416 | MS.gene82937:CDS |
TTCAGGATTGGGCTGTATTT+CGG | 0.328902 | 6.2:+2632169 | MS.gene82937:intron |
GTCATGCAACTTCCCGTATC+AGG | 0.332838 | 6.2:+2632460 | MS.gene82937:CDS |
TCAGGGGAGAACGAATAAAT+TGG | 0.339111 | 6.2:+2632212 | MS.gene82937:CDS |
TATTCATGCAATTGCTTTGT+TGG | 0.345450 | 6.2:+2627543 | MS.gene82937:CDS |
ATTCTCAGAGATAAATTGTA+TGG | 0.348690 | 6.2:+2629795 | MS.gene82937:intron |
AGTCAATACTCTTGTTACTT+TGG | 0.356436 | 6.2:+2629625 | MS.gene82937:CDS |
GAAGCTCATGAATTCTTTAG+TGG | 0.362151 | 6.2:+2633183 | MS.gene82937:CDS |
ACATATGAGGGAGGCATTGC+TGG | 0.364574 | 6.2:+2631821 | MS.gene82937:CDS |
ACCGAGATGGCGAAGTCCTT+TGG | 0.387222 | 6.2:-2627364 | None:intergenic |
GGCGGATGAAACAGCCAAAT+GGG | 0.402834 | 6.2:+2629826 | MS.gene82937:CDS |
GGAGGCATTGCTGGTGAGCC+TGG | 0.410790 | 6.2:+2631830 | MS.gene82937:CDS |
ATTCATGCAATTGCTTTGTT+GGG | 0.415981 | 6.2:+2627544 | MS.gene82937:CDS |
TGGATGGATGCTACTCGTTT+TGG | 0.416129 | 6.2:+2632235 | MS.gene82937:CDS |
ATGGATGGGTTCTAAGAGAT+TGG | 0.422639 | 6.2:-2633127 | None:intergenic |
AGAAAACCAACTTACAGAAA+TGG | 0.423782 | 6.2:-2630261 | None:intergenic |
TTTGGGTGGTGATAAAGCTT+TGG | 0.433407 | 6.2:+2629643 | MS.gene82937:CDS |
ACCTACCTTCACGCCTGATA+CGG | 0.438933 | 6.2:-2632473 | None:intergenic |
CCATTACCTAAGGTAGTAAT+GGG | 0.438990 | 6.2:+2633096 | MS.gene82937:CDS |
TTGCAGCTGTCAGACATATG+AGG | 0.439995 | 6.2:+2631808 | MS.gene82937:intron |
TAACAGTTGCTTGCCTGGCC+AGG | 0.440801 | 6.2:-2629008 | None:intergenic |
CACTCGTGTTACTGTTTAAG+TGG | 0.449126 | 6.2:+2633027 | MS.gene82937:CDS |
TAAGGGACAAACCGGGTAAA+CGG | 0.449425 | 6.2:+2632992 | MS.gene82937:CDS |
GGCGCTTGGACAAACTATAC+TGG | 0.457392 | 6.2:-2633062 | None:intergenic |
ATCTGTTATTGAAGAACAAA+TGG | 0.462163 | 6.2:+2632368 | MS.gene82937:CDS |
TAAGGACCCATTACTACCTT+AGG | 0.464021 | 6.2:-2633102 | None:intergenic |
ATCCAAATGGTGGATTTGCT+GGG | 0.465107 | 6.2:+2628982 | MS.gene82937:CDS |
CGGCGGATGAAACAGCCAAA+TGG | 0.466773 | 6.2:+2629825 | MS.gene82937:CDS |
ACCATTACCTAAGGTAGTAA+TGG | 0.477052 | 6.2:+2633095 | MS.gene82937:CDS |
CGGTGGACTAAGGGACAAAC+CGG | 0.477303 | 6.2:+2632984 | MS.gene82937:CDS |
CTTTGACTCACCGTCGGTGA+TGG | 0.483468 | 6.2:-2626070 | None:intergenic |
GGCTGTATTTCGGCAAGGTA+AGG | 0.483783 | 6.2:+2632179 | MS.gene82937:CDS |
GATTGGTGAGGCTAATAGCT+TGG | 0.485482 | 6.2:+2632041 | MS.gene82937:CDS |
AATACTCTTGTTACTTTGGG+TGG | 0.487775 | 6.2:+2629629 | MS.gene82937:CDS |
TCCAAAGGACTTCGCCATCT+CGG | 0.488274 | 6.2:+2627363 | MS.gene82937:CDS |
AACATTAAAGAGAGGATGGA+TGG | 0.489455 | 6.2:-2633142 | None:intergenic |
GGTAAGGAGTGTGGATTTCA+GGG | 0.490322 | 6.2:+2632195 | MS.gene82937:CDS |
TACATGAGGGATTGAGCGTT+AGG | 0.491428 | 6.2:-2626154 | None:intergenic |
AGGAGCAAGACGGTGGACTA+AGG | 0.494162 | 6.2:+2632974 | MS.gene82937:intron |
TGCTGGTGAGCCTGGTTCTG+AGG | 0.495541 | 6.2:+2631838 | MS.gene82937:CDS |
GGTGTCTCCGCCGCAGATGA+AGG | 0.504108 | 6.2:-2626049 | None:intergenic |
CATTGCAGCTAACCCACAAA+AGG | 0.514734 | 6.2:-2632013 | None:intergenic |
TGGTGGAGAATCTGGGCGCT+TGG | 0.523920 | 6.2:-2633076 | None:intergenic |
CCCATTACTACCTTAGGTAA+TGG | 0.524357 | 6.2:-2633096 | None:intergenic |
TTATTCAGGATGCATGATGA+AGG | 0.524529 | 6.2:+2630209 | MS.gene82937:intron |
CGGTGAGTCAAAGAGATCAA+TGG | 0.527422 | 6.2:+2626080 | MS.gene82937:CDS |
TAGTGATCCCTCCGTTTACC+CGG | 0.528287 | 6.2:-2633003 | None:intergenic |
AAACAACATTAAAGAGAGGA+TGG | 0.528927 | 6.2:-2633146 | None:intergenic |
TTAGCTGCAATGATTCTGAT+TGG | 0.529989 | 6.2:+2632024 | MS.gene82937:CDS |
GAGCCTGGTTCTGAGGCTCA+TGG | 0.530621 | 6.2:+2631845 | MS.gene82937:CDS |
CCTACCTTCACGCCTGATAC+GGG | 0.531625 | 6.2:-2632472 | None:intergenic |
GTTATAACTTTATTAATGAG+TGG | 0.541872 | 6.2:+2632639 | MS.gene82937:CDS |
CCACCATGAGCCTCAGAACC+AGG | 0.543414 | 6.2:-2631848 | None:intergenic |
TAGGTAATGGTGGAGAATCT+GGG | 0.551089 | 6.2:-2633083 | None:intergenic |
AAATGCCAACAGGATCCAAA+TGG | 0.555316 | 6.2:+2628969 | MS.gene82937:intron |
TTCTCAGAGATAAATTGTAT+GGG | 0.561141 | 6.2:+2629796 | MS.gene82937:intron |
CTGTAAAAGCTGAACCGAGA+TGG | 0.569707 | 6.2:-2627377 | None:intergenic |
GGTTCTAAGAGATTGGAGTA+AGG | 0.574336 | 6.2:-2633120 | None:intergenic |
AGATTCTCCACCATTACCTA+AGG | 0.575023 | 6.2:+2633086 | MS.gene82937:CDS |
GGAGCAAGACGGTGGACTAA+GGG | 0.576325 | 6.2:+2632975 | MS.gene82937:intron |
GGACAAACCGGGTAAACGGA+GGG | 0.577579 | 6.2:+2632996 | MS.gene82937:CDS |
TGATCTCTTTGACTCACCGT+CGG | 0.581992 | 6.2:-2626076 | None:intergenic |
TATTGAAGAACAAATGGTAG+AGG | 0.587201 | 6.2:+2632374 | MS.gene82937:CDS |
GATGAGCTGATCAAGAATGT+TGG | 0.587709 | 6.2:+2631137 | MS.gene82937:CDS |
ATGAGGGATTGAGCGTTAGG+AGG | 0.587858 | 6.2:-2626151 | None:intergenic |
TGCAGCTGTCAGACATATGA+GGG | 0.592082 | 6.2:+2631809 | MS.gene82937:intron |
GGGGAGAACGAATAAATTGG+TGG | 0.592201 | 6.2:+2632215 | MS.gene82937:CDS |
AGAACGAATAAATTGGTGGA+TGG | 0.594828 | 6.2:+2632219 | MS.gene82937:CDS |
GCGGATGAAACAGCCAAATG+GGG | 0.595698 | 6.2:+2629827 | MS.gene82937:CDS |
GCATAAGTTGTGGCAAGATG+AGG | 0.596253 | 6.2:-2629599 | None:intergenic |
TTTCGGCAAGGTAAGGAGTG+TGG | 0.597905 | 6.2:+2632186 | MS.gene82937:CDS |
TGCCAACAGGATCCAAATGG+TGG | 0.598194 | 6.2:+2628972 | MS.gene82937:intron |
CTGGTTCTGAGGCTCATGGT+GGG | 0.601092 | 6.2:+2631849 | MS.gene82937:CDS |
ATAAATTGTATGGGTTTATG+CGG | 0.607119 | 6.2:+2629805 | MS.gene82937:CDS |
CCTGGTTCTGAGGCTCATGG+TGG | 0.607455 | 6.2:+2631848 | MS.gene82937:CDS |
AATTGTATGGGTTTATGCGG+CGG | 0.609438 | 6.2:+2629808 | MS.gene82937:CDS |
TCCAAATGGTGGATTTGCTG+GGG | 0.615373 | 6.2:+2628983 | MS.gene82937:CDS |
AAATAAAATAAACCTGGCAA+CGG | 0.617415 | 6.2:-2627615 | None:intergenic |
ATTACTACCTTAGGTAATGG+TGG | 0.619462 | 6.2:-2633093 | None:intergenic |
TCCAAAACAACATTAAAGAG+AGG | 0.621526 | 6.2:-2633150 | None:intergenic |
GATTGGGCTGTATTTCGGCA+AGG | 0.622139 | 6.2:+2632174 | MS.gene82937:CDS |
GCCGCAGATGAAGGTTCCAT+CGG | 0.623012 | 6.2:-2626040 | None:intergenic |
ATTGACTGCAGCATAAGTTG+TGG | 0.634458 | 6.2:-2629609 | None:intergenic |
ACATTAAAGAGAGGATGGAT+GGG | 0.635861 | 6.2:-2633141 | None:intergenic |
GGGACAAACCGGGTAAACGG+AGG | 0.636900 | 6.2:+2632995 | MS.gene82937:CDS |
ACTTCCCGTATCAGGCGTGA+AGG | 0.637896 | 6.2:+2632468 | MS.gene82937:CDS |
ACCGATGGAACCTTCATCTG+CGG | 0.654444 | 6.2:+2626039 | None:intergenic |
CACATCGAGTATCTTTCCAA+AGG | 0.657689 | 6.2:+2627348 | MS.gene82937:CDS |
CGGATGAAACAGCCAAATGG+GGG | 0.660719 | 6.2:+2629828 | MS.gene82937:CDS |
GGCGGAGACACCATCACCGA+CGG | 0.661023 | 6.2:+2626060 | MS.gene82937:CDS |
GATGGAACCTTCATCTGCGG+CGG | 0.662039 | 6.2:+2626042 | None:intergenic |
CCAAATGGTGGATTTGCTGG+GGG | 0.667430 | 6.2:+2628984 | MS.gene82937:CDS |
GTTTATGGTGCAGTCGACCG+TGG | 0.667854 | 6.2:+2627506 | MS.gene82937:intron |
TGCAATGATTCTGATTGGTG+AGG | 0.672025 | 6.2:+2632029 | MS.gene82937:CDS |
GAGTCAAAGAGATCAATGGA+TGG | 0.682893 | 6.2:+2626084 | MS.gene82937:CDS |
TTGATGCAGGAGCAAGACGG+TGG | 0.694884 | 6.2:+2632967 | MS.gene82937:intron |
GGTGGACTAAGGGACAAACC+GGG | 0.696032 | 6.2:+2632985 | MS.gene82937:CDS |
GTAAGGAGTGTGGATTTCAG+GGG | 0.704839 | 6.2:+2632196 | MS.gene82937:CDS |
ATAATCCAGTAACACAGCCA+CGG | 0.706640 | 6.2:-2627523 | None:intergenic |
AGCTGTCAGACATATGAGGG+AGG | 0.713177 | 6.2:+2631812 | MS.gene82937:intron |
TGATTGATGCAGGAGCAAGA+CGG | 0.744961 | 6.2:+2632964 | MS.gene82937:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 2626043 | 2633212 | 2626043 | ID=MS.gene82937 |
chr6.2 | mRNA | 2626043 | 2633212 | 2626043 | ID=MS.gene82937.t1;Parent=MS.gene82937 |
chr6.2 | exon | 2626043 | 2626173 | 2626043 | ID=MS.gene82937.t1.exon1;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2626043 | 2626173 | 2626043 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2627326 | 2627412 | 2627326 | ID=MS.gene82937.t1.exon2;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2627326 | 2627412 | 2627326 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2627519 | 2627624 | 2627519 | ID=MS.gene82937.t1.exon3;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2627519 | 2627624 | 2627519 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2628981 | 2629016 | 2628981 | ID=MS.gene82937.t1.exon4;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2628981 | 2629016 | 2628981 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2629596 | 2629678 | 2629596 | ID=MS.gene82937.t1.exon5;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2629596 | 2629678 | 2629596 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2629803 | 2629856 | 2629803 | ID=MS.gene82937.t1.exon6;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2629803 | 2629856 | 2629803 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2630217 | 2630268 | 2630217 | ID=MS.gene82937.t1.exon7;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2630217 | 2630268 | 2630217 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2631110 | 2631174 | 2631110 | ID=MS.gene82937.t1.exon8;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2631110 | 2631174 | 2631110 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2631814 | 2631870 | 2631814 | ID=MS.gene82937.t1.exon9;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2631814 | 2631870 | 2631814 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2632008 | 2632080 | 2632008 | ID=MS.gene82937.t1.exon10;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2632008 | 2632080 | 2632008 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2632174 | 2632260 | 2632174 | ID=MS.gene82937.t1.exon11;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2632174 | 2632260 | 2632174 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2632336 | 2632489 | 2632336 | ID=MS.gene82937.t1.exon12;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2632336 | 2632489 | 2632336 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2632600 | 2632724 | 2632600 | ID=MS.gene82937.t1.exon13;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2632600 | 2632724 | 2632600 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
chr6.2 | exon | 2632976 | 2633212 | 2632976 | ID=MS.gene82937.t1.exon14;Parent=MS.gene82937.t1 |
chr6.2 | CDS | 2632976 | 2633212 | 2632976 | ID=cds.MS.gene82937.t1;Parent=MS.gene82937.t1 |
Gene Sequence |
Protein sequence |