Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049808.t1 | XP_003594049.2 | 99.3 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 1.20E-78 | 302.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049808.t1 | Q9ZNV9 | 71.1 | 152 | 44 | 0 | 1 | 152 | 1 | 152 | 3.0e-57 | 222.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049808.t1 | B7FGU6 | 99.3 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 8.8e-79 | 302.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene049808 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene050689 | 0.805963 | 1.04E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene051328 | 0.800433 | 1.44E-48 | -1.69E-46 |
| MS.gene049808 | MS.gene052516 | 0.80973 | 1.64E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene052863 | 0.819311 | 1.24E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene055580 | -0.804339 | 2.27E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene057287 | 0.83334 | 5.64E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene057694 | 0.816755 | 4.69E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene058008 | 0.801594 | 8.36E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene058009 | 0.836298 | 1.02E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene058783 | 0.801214 | 1.00E-48 | -1.69E-46 |
| MS.gene049808 | MS.gene061980 | 0.806886 | 6.61E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene062042 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene049808 | MS.gene062485 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene064354 | 0.801711 | 7.91E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene065825 | 0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene06739 | 0.802236 | 6.17E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene067802 | 0.810502 | 1.12E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene06836 | 0.814277 | 1.67E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene06890 | 0.814367 | 1.60E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene068924 | 0.808187 | 3.50E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene06957 | 0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene049808 | MS.gene070787 | 0.832922 | 7.17E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene07388 | 0.834606 | 2.72E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene074258 | 0.811528 | 6.69E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene08387 | 0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene09604 | 0.818367 | 2.03E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene20302 | 0.820302 | 7.37E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene21426 | 0.817636 | 2.98E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene21486 | 0.818983 | 1.47E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene22499 | 0.809178 | 2.15E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene23893 | 0.811898 | 5.56E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene24484 | 0.802444 | 5.59E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene25152 | 0.827913 | 1.20E-54 | -1.69E-46 |
| MS.gene049808 | MS.gene25435 | 0.816673 | 4.90E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene25436 | 0.813711 | 2.23E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene25643 | 0.802202 | 6.27E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene26832 | 0.810786 | 9.70E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene27947 | 0.818087 | 2.35E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene29807 | 0.804933 | 1.70E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene29920 | 0.807597 | 4.68E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene29921 | 0.808348 | 3.24E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene31445 | 0.805124 | 1.55E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene32134 | 0.82339 | 1.42E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene34180 | 0.820506 | 6.62E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene34232 | 0.823332 | 1.47E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene34266 | 0.817106 | 3.92E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene35000 | 0.822221 | 2.66E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene35003 | 0.812328 | 4.48E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene35004 | 0.832059 | 1.17E-55 | -1.69E-46 |
| MS.gene049808 | MS.gene35005 | 0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene35611 | 0.830574 | 2.72E-55 | -1.69E-46 |
| MS.gene049808 | MS.gene35858 | 0.807431 | 5.07E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene38844 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene39882 | 0.806253 | 9.00E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene43537 | 0.816631 | 5.01E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene44304 | 0.800447 | 1.44E-48 | -1.69E-46 |
| MS.gene049808 | MS.gene47208 | 0.827074 | 1.91E-54 | -1.69E-46 |
| MS.gene049808 | MS.gene47768 | 0.818924 | 1.52E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene47906 | 0.806637 | 7.47E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene48519 | 0.813492 | 2.49E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene49793 | 0.806744 | 7.09E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene50775 | 0.836024 | 1.19E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene52199 | 0.839901 | 1.20E-57 | -1.69E-46 |
| MS.gene049808 | MS.gene52357 | 0.821933 | 3.10E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene52946 | 0.837001 | 6.72E-57 | -1.69E-46 |
| MS.gene049808 | MS.gene56462 | 0.843142 | 1.68E-58 | -1.69E-46 |
| MS.gene049808 | MS.gene58197 | 0.811354 | 7.30E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene62322 | 0.81327 | 2.79E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene63032 | 0.815083 | 1.11E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene63327 | 0.801735 | 7.83E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene64677 | 0.832789 | 7.74E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene66280 | 0.817307 | 3.53E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene66293 | 0.810204 | 1.29E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene66472 | 0.802755 | 4.83E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene67217 | 0.807823 | 4.19E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene70910 | 0.807439 | 5.05E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene71236 | 0.839777 | 1.29E-57 | -1.69E-46 |
| MS.gene049808 | MS.gene71616 | 0.806816 | 6.85E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene72413 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene73243 | 0.800933 | 1.14E-48 | -1.69E-46 |
| MS.gene049808 | MS.gene75401 | 0.801846 | 7.43E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene75990 | 0.819224 | 1.30E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene76034 | 0.840704 | 7.41E-58 | -1.69E-46 |
| MS.gene049808 | MS.gene76407 | 0.80312 | 4.06E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene80257 | 0.816337 | 5.83E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene80299 | 0.809555 | 1.79E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene81900 | 0.81404 | 1.89E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene82937 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene83055 | 0.820747 | 5.83E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene83996 | 0.822832 | 1.92E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene84469 | 0.8232 | 1.57E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene84847 | 0.815914 | 7.24E-52 | -1.69E-46 |
| MS.gene049808 | MS.gene85561 | 0.811755 | 5.97E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene87292 | 0.834661 | 2.63E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene87954 | 0.80768 | 4.49E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene91307 | 0.810775 | 9.74E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene91931 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene91933 | 0.820656 | 6.11E-53 | -1.69E-46 |
| MS.gene049808 | MS.gene93764 | 0.812232 | 4.70E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene95728 | 0.803969 | 2.70E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene96526 | 0.810976 | 8.82E-51 | -1.69E-46 |
| MS.gene049808 | MS.gene97237 | 0.825586 | 4.32E-54 | -1.69E-46 |
| MS.gene049808 | MS.gene97238 | 0.833269 | 5.88E-56 | -1.69E-46 |
| MS.gene049808 | MS.gene97306 | 0.802431 | 5.63E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene99550 | 0.806983 | 6.31E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene99595 | 0.820649 | 6.13E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049808 | MS.gene83535 | PPI |
| MS.gene60023 | MS.gene049808 | PPI |
| MS.gene067406 | MS.gene049808 | PPI |
| MS.gene89014 | MS.gene049808 | PPI |
| MS.gene75348 | MS.gene049808 | PPI |
| MS.gene026751 | MS.gene049808 | PPI |
| MS.gene034089 | MS.gene049808 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049808.t1 | MTR_2g020770 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 5.93e-111 | 311 |
| MS.gene049808.t1 | MTR_2g020770 | 96.429 | 140 | 5 | 0 | 1 | 140 | 1 | 140 | 2.35e-97 | 277 |
| MS.gene049808.t1 | MTR_1g082290 | 56.835 | 139 | 60 | 0 | 5 | 143 | 6 | 144 | 1.09e-59 | 182 |
| MS.gene049808.t1 | MTR_7g114020 | 60.993 | 141 | 54 | 1 | 9 | 148 | 6 | 146 | 4.28e-59 | 180 |
| MS.gene049808.t1 | MTR_1g089130 | 55.944 | 143 | 63 | 0 | 5 | 147 | 3 | 145 | 1.06e-56 | 174 |
| MS.gene049808.t1 | MTR_2g100880 | 42.446 | 139 | 80 | 0 | 1 | 139 | 1 | 139 | 5.20e-39 | 129 |
| MS.gene049808.t1 | MTR_2g100900 | 42.446 | 139 | 80 | 0 | 1 | 139 | 1 | 139 | 9.47e-39 | 129 |
| MS.gene049808.t1 | MTR_2g103870 | 46.207 | 145 | 73 | 3 | 10 | 149 | 10 | 154 | 1.79e-31 | 110 |
| MS.gene049808.t1 | MTR_4g010160 | 43.478 | 115 | 63 | 2 | 37 | 149 | 28 | 142 | 7.56e-28 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049808.t1 | AT3G21510 | 70.588 | 153 | 45 | 0 | 1 | 153 | 1 | 153 | 6.73e-71 | 210 |
| MS.gene049808.t1 | AT1G03430 | 52.632 | 152 | 71 | 1 | 3 | 153 | 6 | 157 | 7.81e-56 | 172 |
| MS.gene049808.t1 | AT5G39340 | 50.331 | 151 | 74 | 1 | 3 | 152 | 5 | 155 | 3.76e-51 | 160 |
| MS.gene049808.t1 | AT3G29350 | 48.026 | 152 | 78 | 1 | 3 | 153 | 5 | 156 | 4.67e-51 | 160 |
| MS.gene049808.t1 | AT5G39340 | 50.331 | 151 | 74 | 1 | 3 | 152 | 38 | 188 | 1.44e-50 | 160 |
| MS.gene049808.t1 | AT5G39340 | 50.331 | 151 | 74 | 1 | 3 | 152 | 54 | 204 | 3.23e-50 | 160 |
| MS.gene049808.t1 | AT5G39340 | 50.331 | 151 | 74 | 1 | 3 | 152 | 54 | 204 | 3.23e-50 | 160 |
| MS.gene049808.t1 | AT1G03430 | 51.852 | 135 | 64 | 1 | 3 | 136 | 6 | 140 | 1.82e-46 | 149 |
| MS.gene049808.t1 | AT3G16360 | 44.030 | 134 | 75 | 0 | 6 | 139 | 1 | 134 | 8.65e-39 | 129 |
| MS.gene049808.t1 | AT3G16360 | 45.000 | 120 | 66 | 0 | 19 | 138 | 8 | 127 | 1.04e-36 | 123 |
| MS.gene049808.t1 | AT3G29350 | 47.273 | 110 | 57 | 1 | 3 | 111 | 5 | 114 | 6.43e-34 | 115 |
| MS.gene049808.t1 | AT1G80100 | 49.275 | 138 | 68 | 2 | 14 | 149 | 17 | 154 | 2.32e-27 | 100 |
| MS.gene049808.t1 | AT1G80100 | 47.778 | 90 | 46 | 1 | 61 | 149 | 43 | 132 | 1.21e-21 | 84.7 |
| MS.gene049808.t1 | AT4G04402 | 33.750 | 160 | 94 | 4 | 6 | 153 | 8 | 167 | 1.32e-21 | 85.9 |
| MS.gene049808.t1 | AT1G80100 | 46.774 | 124 | 65 | 1 | 14 | 136 | 17 | 140 | 1.51e-21 | 85.5 |
Find 29 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATGTTCACCAGTTTA+AGG | 0.220882 | 2.2:+64473491 | MS.gene049808:CDS |
| ACTCAGTTCAGTTCCATCAT+AGG | 0.355461 | 2.2:-64474216 | None:intergenic |
| GTGTTGAGAAAAGGGTTTCT+TGG | 0.384266 | 2.2:+64473022 | MS.gene049808:intron |
| GCTGCTGAAGTTGCAGAAAC+TGG | 0.419928 | 2.2:-64473049 | None:intergenic |
| TTGCACTGCTACCCTTAAAC+TGG | 0.425560 | 2.2:-64473503 | None:intergenic |
| GCACATGTTCACCAGTTTAA+GGG | 0.428803 | 2.2:+64473492 | MS.gene049808:CDS |
| CTACATCAAATCCATGTTCA+TGG | 0.459422 | 2.2:+64472872 | MS.gene049808:CDS |
| CTAATTTATGCAGGTGCCGC+AGG | 0.459692 | 2.2:+64473999 | MS.gene049808:intron |
| GCAGCTTGAGCAGCAGATAG+TGG | 0.473916 | 2.2:+64474176 | MS.gene049808:intron |
| CTCAGTTCAGTTCCATCATA+GGG | 0.476361 | 2.2:-64474215 | None:intergenic |
| TGAGAAAAGGGTTTCTTGGA+TGG | 0.497354 | 2.2:+64473026 | MS.gene049808:intron |
| GGGTCAGATGCGGAGACAGT+GGG | 0.506261 | 2.2:+64472845 | MS.gene049808:CDS |
| TAAGCTTGAAACATTGTTGA+GGG | 0.522076 | 2.2:+64474063 | MS.gene049808:CDS |
| TGACAGCATAGGTGCACAAA+GGG | 0.524943 | 2.2:+64473750 | MS.gene049808:intron |
| GAGCAGCAGATAGTGGCAGC+TGG | 0.537850 | 2.2:+64474183 | MS.gene049808:CDS |
| TGGTCTAACCTCCATGAACA+TGG | 0.544818 | 2.2:-64472883 | None:intergenic |
| TGGTGGCTCAATCCCTATGA+TGG | 0.558041 | 2.2:+64474203 | MS.gene049808:CDS |
| TTTGTAGAGAAACATGGAGG+TGG | 0.564605 | 2.2:+64472824 | None:intergenic |
| ATAAGCTTGAAACATTGTTG+AGG | 0.584829 | 2.2:+64474062 | MS.gene049808:CDS |
| TGGGTCAGATGCGGAGACAG+TGG | 0.592973 | 2.2:+64472844 | MS.gene049808:CDS |
| TCAGATGCGGAGACAGTGGG+TGG | 0.608143 | 2.2:+64472848 | MS.gene049808:CDS |
| TTGTAGAGAAACATGGAGGT+GGG | 0.611758 | 2.2:+64472825 | None:intergenic |
| AGTTTAAGGGTAGCAGTGCA+AGG | 0.619461 | 2.2:+64473505 | MS.gene049808:CDS |
| TCACTTGCTGCAAACACCTG+CGG | 0.622315 | 2.2:-64474015 | None:intergenic |
| CAGCAGATAGTGGCAGCTGG+TGG | 0.634128 | 2.2:+64474186 | MS.gene049808:CDS |
| GAAATTGCGAAAAGCAACGC+AGG | 0.637314 | 2.2:-64473782 | None:intergenic |
| ACATGGAGGTGGGTCAGATG+CGG | 0.639294 | 2.2:+64472835 | None:intergenic |
| TTGACAGCATAGGTGCACAA+AGG | 0.666337 | 2.2:+64473749 | MS.gene049808:intron |
| CATCAAATCCATGTTCATGG+AGG | 0.716249 | 2.2:+64472875 | MS.gene049808:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATATGATTTCTTTTA+TGG | + | chr2.2:64474144-64474163 | MS.gene049808:intron | 10.0% |
| !! | AAATCCATAAGTTTAATATA+AGG | - | chr2.2:64474122-64474141 | None:intergenic | 15.0% |
| !! | ATTAGAGAATATAATGAATT+TGG | + | chr2.2:64473219-64473238 | MS.gene049808:intron | 15.0% |
| !!! | ACTATGCTATTATATTATTT+TGG | + | chr2.2:64473699-64473718 | MS.gene049808:intron | 15.0% |
| !! | AAATAGTCTGTTATGAAATT+CGG | - | chr2.2:64473659-64473678 | None:intergenic | 20.0% |
| !! | AGAACCTTATATTAAACTTA+TGG | + | chr2.2:64474115-64474134 | MS.gene049808:intron | 20.0% |
| !!! | CTGTAGCATTTATAAATTTT+AGG | - | chr2.2:64473553-64473572 | None:intergenic | 20.0% |
| !!! | TTTTCAATTGTTGATTTTGT+TGG | + | chr2.2:64472978-64472997 | MS.gene049808:intron | 20.0% |
| !!! | TTTTGCTTTTGTTTTTGTTT+AGG | + | chr2.2:64472945-64472964 | MS.gene049808:intron | 20.0% |
| ! | AACATGAGAGAAATGAAAAA+AGG | - | chr2.2:64473195-64473214 | None:intergenic | 25.0% |
| ! | ACAACTTCAAAAACAAATTC+AGG | - | chr2.2:64473092-64473111 | None:intergenic | 25.0% |
| ! | AGTAAAGTATAACCAAGAAT+TGG | - | chr2.2:64473313-64473332 | None:intergenic | 25.0% |
| ! | CAACTTCAAAAACAAATTCA+GGG | - | chr2.2:64473091-64473110 | None:intergenic | 25.0% |
| ! | GTGAAATTTCTAATTTATGC+AGG | + | chr2.2:64473990-64474009 | MS.gene049808:intron | 25.0% |
| !! | AGCATTTATAAATTTTAGGC+TGG | - | chr2.2:64473549-64473568 | None:intergenic | 25.0% |
| !! | CATGATCTTTAATGTTGTTT+GGG | + | chr2.2:64473421-64473440 | MS.gene049808:intron | 25.0% |
| !! | TGAATTTTTCGCTAATTTCA+TGG | + | chr2.2:64473958-64473977 | MS.gene049808:intron | 25.0% |
| !!! | GACTAGTTGTTTAATAGTTT+TGG | + | chr2.2:64473846-64473865 | MS.gene049808:intron | 25.0% |
| !!! | TTTTGTTTGTGTTGAGAAAA+GGG | + | chr2.2:64473014-64473033 | MS.gene049808:intron | 25.0% |
| !!! | TTTTTTTGCTATTAATGACC+CGG | - | chr2.2:64473381-64473400 | None:intergenic | 25.0% |
| ATAAGCTTGAAACATTGTTG+AGG | + | chr2.2:64474062-64474081 | MS.gene049808:CDS | 30.0% | |
| GCATGATCTTTAATGTTGTT+TGG | + | chr2.2:64473420-64473439 | MS.gene049808:intron | 30.0% | |
| GCTACAGAATCTGAATAAAT+GGG | + | chr2.2:64473566-64473585 | MS.gene049808:intron | 30.0% | |
| TAAGCTTGAAACATTGTTGA+GGG | + | chr2.2:64474063-64474082 | MS.gene049808:CDS | 30.0% | |
| TGCTACAGAATCTGAATAAA+TGG | + | chr2.2:64473565-64473584 | MS.gene049808:intron | 30.0% | |
| ! | ACACATTAATTGACTCTTCT+GGG | + | chr2.2:64472912-64472931 | MS.gene049808:intron | 30.0% |
| ! | GTCAATTAATGTGTGTTTTG+TGG | - | chr2.2:64472906-64472925 | None:intergenic | 30.0% |
| !! | TTTTCTTTGATGATTCTGAG+AGG | + | chr2.2:64473117-64473136 | MS.gene049808:CDS | 30.0% |
| !!! | GTTTTGTTTGTGTTGAGAAA+AGG | + | chr2.2:64473013-64473032 | MS.gene049808:intron | 30.0% |
| AATAGCTACACAAGAATTGC+AGG | - | chr2.2:64473608-64473627 | None:intergenic | 35.0% | |
| CTACATCAAATCCATGTTCA+TGG | + | chr2.2:64472872-64472891 | MS.gene049808:CDS | 35.0% | |
| GTATGTTTGATTGACAGCAT+AGG | + | chr2.2:64473739-64473758 | MS.gene049808:intron | 35.0% | |
| ! | CACACATTAATTGACTCTTC+TGG | + | chr2.2:64472911-64472930 | MS.gene049808:intron | 35.0% |
| CAGCTAGTGCAATAGTTTGA+AGG | + | chr2.2:64473885-64473904 | MS.gene049808:intron | 40.0% | |
| CATCAAATCCATGTTCATGG+AGG | + | chr2.2:64472875-64472894 | MS.gene049808:CDS | 40.0% | |
| CTTAACTGCTTAGATGCTAG+AGG | + | chr2.2:64473927-64473946 | MS.gene049808:intron | 40.0% | |
| GCACATGTTCACCAGTTTAA+GGG | + | chr2.2:64473492-64473511 | MS.gene049808:CDS | 40.0% | |
| GTGTTGAGAAAAGGGTTTCT+TGG | + | chr2.2:64473022-64473041 | MS.gene049808:intron | 40.0% | |
| TATTAATGACCCGGTTCCTA+GGG | - | chr2.2:64473372-64473391 | None:intergenic | 40.0% | |
| TGAGAAAAGGGTTTCTTGGA+TGG | + | chr2.2:64473026-64473045 | MS.gene049808:intron | 40.0% | |
| TGCACATGTTCACCAGTTTA+AGG | + | chr2.2:64473491-64473510 | MS.gene049808:CDS | 40.0% | |
| !! | GTTTGGGTTTTACATGTGCA+GGG | + | chr2.2:64473437-64473456 | MS.gene049808:intron | 40.0% |
| !! | TGTTTGGGTTTTACATGTGC+AGG | + | chr2.2:64473436-64473455 | MS.gene049808:intron | 40.0% |
| AGTTTAAGGGTAGCAGTGCA+AGG | + | chr2.2:64473505-64473524 | MS.gene049808:CDS | 45.0% | |
| CTATTAATGACCCGGTTCCT+AGG | - | chr2.2:64473373-64473392 | None:intergenic | 45.0% | |
| CTTACCTCTCGAGTGAACTT+CGG | + | chr2.2:64473331-64473350 | MS.gene049808:intron | 45.0% | |
| GAAATTGCGAAAAGCAACGC+AGG | - | chr2.2:64473785-64473804 | None:intergenic | 45.0% | |
| TAATCCGAAGTTCACTCGAG+AGG | - | chr2.2:64473338-64473357 | None:intergenic | 45.0% | |
| TGACAGCATAGGTGCACAAA+GGG | + | chr2.2:64473750-64473769 | MS.gene049808:intron | 45.0% | |
| TGGTCTAACCTCCATGAACA+TGG | - | chr2.2:64472886-64472905 | None:intergenic | 45.0% | |
| TTGACAGCATAGGTGCACAA+AGG | + | chr2.2:64473749-64473768 | MS.gene049808:intron | 45.0% | |
| TTGCACTGCTACCCTTAAAC+TGG | - | chr2.2:64473506-64473525 | None:intergenic | 45.0% | |
| AACCAAGAATTGGTCCACCG+AGG | - | chr2.2:64473303-64473322 | None:intergenic | 50.0% | |
| ATCCTCGGTGGACCAATTCT+TGG | + | chr2.2:64473298-64473317 | MS.gene049808:intron | 50.0% | |
| CCGAGGATAGTTCTCCTGAA+CGG | - | chr2.2:64473286-64473305 | None:intergenic | 50.0% | |
| CCGTTCAGGAGAACTATCCT+CGG | + | chr2.2:64473283-64473302 | MS.gene049808:intron | 50.0% | |
| CGAGTGAACTTCGGATTACC+AGG | + | chr2.2:64473340-64473359 | MS.gene049808:intron | 50.0% | |
| GCTGCTGAAGTTGCAGAAAC+TGG | - | chr2.2:64473052-64473071 | None:intergenic | 50.0% | |
| TCTCCTGAACGGTTCGTTCT+AGG | - | chr2.2:64473275-64473294 | None:intergenic | 50.0% | |
| TGGTGGCTCAATCCCTATGA+TGG | + | chr2.2:64474203-64474222 | MS.gene049808:CDS | 50.0% | |
| TTCAGGAGAACTATCCTCGG+TGG | + | chr2.2:64473286-64473305 | MS.gene049808:intron | 50.0% | |
| ! | CTAATTTATGCAGGTGCCGC+AGG | + | chr2.2:64473999-64474018 | MS.gene049808:intron | 50.0% |
| ! | TCACTTGCTGCAAACACCTG+CGG | - | chr2.2:64474018-64474037 | None:intergenic | 50.0% |
| AATGACCCGGTTCCTAGGGA+AGG | - | chr2.2:64473368-64473387 | None:intergenic | 55.0% | |
| ATGACCCGGTTCCTAGGGAA+GGG | - | chr2.2:64473367-64473386 | None:intergenic | 55.0% | |
| CCACCTAGAACGAACCGTTC+AGG | + | chr2.2:64473269-64473288 | MS.gene049808:intron | 55.0% | |
| GCAGCTTGAGCAGCAGATAG+TGG | + | chr2.2:64474176-64474195 | MS.gene049808:intron | 55.0% | |
| ! | CCTGAACGGTTCGTTCTAGG+TGG | - | chr2.2:64473272-64473291 | None:intergenic | 55.0% |
| GATTACCAGGCCCCTTCCCT+AGG | + | chr2.2:64473353-64473372 | MS.gene049808:intron | 60.0% | |
| GGGTCAGATGCGGAGACAGT+GGG | + | chr2.2:64472845-64472864 | MS.gene049808:CDS | 60.0% | |
| TCAGATGCGGAGACAGTGGG+TGG | + | chr2.2:64472848-64472867 | MS.gene049808:CDS | 60.0% | |
| TGACCCGGTTCCTAGGGAAG+GGG | - | chr2.2:64473366-64473385 | None:intergenic | 60.0% | |
| TGGGTCAGATGCGGAGACAG+TGG | + | chr2.2:64472844-64472863 | MS.gene049808:CDS | 60.0% | |
| ! | CAGCAGATAGTGGCAGCTGG+TGG | + | chr2.2:64474186-64474205 | MS.gene049808:CDS | 60.0% |
| ! | GAGCAGCAGATAGTGGCAGC+TGG | + | chr2.2:64474183-64474202 | MS.gene049808:CDS | 60.0% |
| AGGCCCCTTCCCTAGGAACC+GGG | + | chr2.2:64473360-64473379 | MS.gene049808:intron | 65.0% | |
| CAGGCCCCTTCCCTAGGAAC+CGG | + | chr2.2:64473359-64473378 | MS.gene049808:intron | 65.0% | |
| CGGTTCCTAGGGAAGGGGCC+TGG | - | chr2.2:64473361-64473380 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 64472837 | 64474236 | 64472837 | ID=MS.gene049808 |
| chr2.2 | mRNA | 64472837 | 64474236 | 64472837 | ID=MS.gene049808.t1;Parent=MS.gene049808 |
| chr2.2 | exon | 64472837 | 64472896 | 64472837 | ID=MS.gene049808.t1.exon1;Parent=MS.gene049808.t1 |
| chr2.2 | CDS | 64472837 | 64472896 | 64472837 | ID=cds.MS.gene049808.t1;Parent=MS.gene049808.t1 |
| chr2.2 | exon | 64473035 | 64473165 | 64473035 | ID=MS.gene049808.t1.exon2;Parent=MS.gene049808.t1 |
| chr2.2 | CDS | 64473035 | 64473165 | 64473035 | ID=cds.MS.gene049808.t1;Parent=MS.gene049808.t1 |
| chr2.2 | exon | 64473458 | 64473526 | 64473458 | ID=MS.gene049808.t1.exon3;Parent=MS.gene049808.t1 |
| chr2.2 | CDS | 64473458 | 64473526 | 64473458 | ID=cds.MS.gene049808.t1;Parent=MS.gene049808.t1 |
| chr2.2 | exon | 64473756 | 64473827 | 64473756 | ID=MS.gene049808.t1.exon4;Parent=MS.gene049808.t1 |
| chr2.2 | CDS | 64473756 | 64473827 | 64473756 | ID=cds.MS.gene049808.t1;Parent=MS.gene049808.t1 |
| chr2.2 | exon | 64474012 | 64474084 | 64474012 | ID=MS.gene049808.t1.exon5;Parent=MS.gene049808.t1 |
| chr2.2 | CDS | 64474012 | 64474084 | 64474012 | ID=cds.MS.gene049808.t1;Parent=MS.gene049808.t1 |
| chr2.2 | exon | 64474180 | 64474236 | 64474180 | ID=MS.gene049808.t1.exon6;Parent=MS.gene049808.t1 |
| chr2.2 | CDS | 64474180 | 64474236 | 64474180 | ID=cds.MS.gene049808.t1;Parent=MS.gene049808.t1 |
| Gene Sequence |
| Protein sequence |
