AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050955


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050955.t1 MTR_7g112090 99.482 193 1 0 1 193 1 193 4.70e-143 396
MS.gene050955.t1 MTR_2g034640 93.264 193 13 0 1 193 1 193 1.45e-137 382
MS.gene050955.t1 MTR_4g121860 89.637 193 20 0 1 193 1 193 1.15e-133 372
MS.gene050955.t1 MTR_4g128910 33.523 176 105 1 18 193 15 178 6.39e-28 103
MS.gene050955.t1 MTR_5g016540 32.203 177 104 2 18 192 15 177 2.46e-25 97.1
MS.gene050955.t1 MTR_6g005820 31.073 177 106 2 18 192 15 177 4.83e-24 93.6
MS.gene050955.t1 MTR_5g034130 31.073 177 106 2 18 192 15 177 5.15e-24 93.6
MS.gene050955.t1 MTR_5g034125 31.073 177 106 2 18 192 15 177 5.15e-24 93.6
MS.gene050955.t1 MTR_7g109960 31.073 177 106 2 18 192 15 177 5.37e-24 93.6
MS.gene050955.t1 MTR_1g086480 31.073 177 106 2 18 192 15 177 5.37e-24 93.6
MS.gene050955.t1 MTR_1g076550 35.088 171 99 2 19 189 16 174 1.46e-23 92.4
MS.gene050955.t1 MTR_4g026950 37.778 135 77 2 22 152 2 133 3.21e-23 91.3
MS.gene050955.t1 MTR_2g022200 37.584 149 81 3 15 151 7 155 3.54e-23 92.0
MS.gene050955.t1 MTR_8g077540 32.164 171 105 1 22 192 18 177 3.54e-23 91.7
MS.gene050955.t1 MTR_5g007810 29.319 191 115 3 3 193 8 178 4.15e-23 91.7
MS.gene050955.t1 MTR_8g077540 32.164 171 105 1 22 192 44 203 9.11e-23 91.3
MS.gene050955.t1 MTR_4g077640 29.319 191 115 3 3 193 8 178 1.43e-22 90.1
MS.gene050955.t1 MTR_5g007820 34.848 132 82 2 20 148 17 147 2.12e-22 89.7
MS.gene050955.t1 MTR_5g015370 36.601 153 95 2 1 152 1 152 2.45e-22 89.4
MS.gene050955.t1 MTR_5g078090 36.296 135 85 1 18 151 17 151 5.98e-22 88.2
MS.gene050955.t1 MTR_5g098820 85.000 40 6 0 39 78 1 40 1.58e-18 78.2
MS.gene050955.t1 MTR_5g098820 82.857 35 6 0 44 78 69 103 1.07e-14 68.2
MS.gene050955.t1 MTR_8g077540 36.458 96 61 0 22 117 18 113 4.09e-16 71.6
MS.gene050955.t1 MTR_5g007840 32.283 127 74 2 20 146 17 131 1.69e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050955.t1 AT4G02080 94.819 193 10 0 1 193 1 193 5.24e-139 386
MS.gene050955.t1 AT3G62560 93.750 192 12 0 1 192 1 192 1.61e-136 379
MS.gene050955.t1 AT1G56330 91.667 192 16 0 1 192 1 192 1.01e-133 372
MS.gene050955.t1 AT1G09180 87.047 193 25 0 1 193 1 193 6.08e-127 355
MS.gene050955.t1 AT1G02620 87.387 111 14 0 83 193 12 122 8.84e-71 211
MS.gene050955.t1 AT2G24765 34.091 176 104 1 18 193 15 178 1.13e-27 103
MS.gene050955.t1 AT3G49870 38.562 153 92 2 1 152 1 152 3.95e-26 99.4
MS.gene050955.t1 AT5G67560 36.424 151 90 2 3 152 7 152 5.03e-25 96.3
MS.gene050955.t1 AT3G49870 40.310 129 76 1 25 152 5 133 1.54e-24 94.7
MS.gene050955.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene050955.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene050955.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene050955.t1 AT3G22950 34.483 174 102 2 19 192 16 177 2.21e-24 94.7
MS.gene050955.t1 AT3G22950 34.483 174 102 2 19 192 16 177 2.21e-24 94.7
MS.gene050955.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene050955.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene050955.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene050955.t1 AT1G10630 31.073 177 106 2 18 192 15 177 5.34e-24 93.6
MS.gene050955.t1 AT1G10630 31.073 177 106 2 18 192 15 177 5.34e-24 93.6
MS.gene050955.t1 AT5G14670 31.073 177 106 2 18 192 15 177 5.39e-24 93.6
MS.gene050955.t1 AT5G14670 31.073 177 106 2 18 192 15 177 5.39e-24 93.6
MS.gene050955.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050955.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050955.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050955.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050955.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050955.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050955.t1 AT1G23490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050955.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050955.t1 AT5G14670 31.073 177 106 2 18 192 15 177 6.58e-24 93.6
MS.gene050955.t1 AT2G24765 40.708 113 67 0 18 130 15 127 6.79e-24 92.0
MS.gene050955.t1 AT2G18390 32.749 171 104 1 22 192 18 177 8.53e-24 93.2
MS.gene050955.t1 AT3G49860 37.143 140 87 1 15 153 6 145 1.18e-23 92.8
MS.gene050955.t1 AT5G37680 36.029 136 86 1 18 152 17 152 1.38e-22 90.1
MS.gene050955.t1 AT5G17060 28.796 191 116 3 3 193 8 178 3.53e-22 89.4
MS.gene050955.t1 AT5G17060 28.796 191 116 3 3 193 8 178 3.53e-22 89.4
MS.gene050955.t1 AT3G03120 32.877 146 90 1 3 148 8 145 9.68e-22 88.2
MS.gene050955.t1 AT2G15310 29.189 185 119 1 8 192 5 177 9.86e-22 88.2
MS.gene050955.t1 AT5G52210 36.242 149 77 3 15 148 7 152 3.34e-20 84.3
MS.gene050955.t1 AT5G52210 36.242 149 77 3 15 148 7 152 3.34e-20 84.3
MS.gene050955.t1 AT3G03120 32.061 131 81 1 3 133 8 130 5.19e-20 82.0
MS.gene050955.t1 AT5G37680 38.835 103 63 0 50 152 3 105 2.46e-18 77.8
MS.gene050955.t1 AT1G02430 31.206 141 89 4 18 151 15 154 1.36e-14 68.6
MS.gene050955.t1 AT1G02430 31.206 141 89 4 18 151 15 154 2.30e-14 68.6

Find 44 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCAGTATTGTGAAGAAAA+TGG 0.290748 7.1:+3839345 MS.gene050955:CDS
TTCTAGCATCGCTTGGATTA+TGG 0.331495 7.1:+3837040 MS.gene050955:CDS
AGACGAATTGCGTTACCATT+TGG 0.332275 7.1:+3839246 MS.gene050955:CDS
GACGAATTGCGTTACCATTT+GGG 0.348316 7.1:+3839247 MS.gene050955:CDS
GAGGCTAAGATCTTATTCTT+AGG 0.351250 7.1:+3837069 MS.gene050955:CDS
TCTCCTTTCTGATGAATCAT+TGG 0.399431 7.1:+3839165 MS.gene050955:CDS
AATGTCCCTTTCCTTGTCCT+TGG 0.407599 7.1:+3839190 MS.gene050955:CDS
ATCAGATTGCTCGTAGAGTC+TGG 0.419780 7.1:+3837808 MS.gene050955:CDS
CATCAGAAGAGTTGAGTATT+GGG 0.422638 7.1:+3837751 MS.gene050955:CDS
TCGTCTTCTGAGGCAGCATA+TGG 0.429799 7.1:-3839229 None:intergenic
GATACTGAGTCGGCTGATGC+TGG 0.450131 7.1:-3837725 None:intergenic
GTTATGGTGATGGTTTCAAA+TGG 0.456424 7.1:+3839368 MS.gene050955:CDS
TACGGGGTTCTAGCATCGCT+TGG 0.473883 7.1:+3837033 MS.gene050955:CDS
TTATGGTGATGGTTTCAAAT+GGG 0.483238 7.1:+3839369 MS.gene050955:CDS
ACATCAGAAGAGTTGAGTAT+TGG 0.487462 7.1:+3837750 MS.gene050955:CDS
GGCTTGAGCAACTTCACCAC+TGG 0.494395 7.1:+3839268 MS.gene050955:CDS
TGCAGTATTGTGAAGAAAAT+GGG 0.501905 7.1:+3839346 MS.gene050955:CDS
TGAAGTTGCTCAAGCCCAAA+TGG 0.508916 7.1:-3839261 None:intergenic
TGTTTCCAAGGACAAGGAAA+GGG 0.516162 7.1:-3839195 None:intergenic
GGTAGATGCAGTGGTCTACT+TGG 0.525431 7.1:+3839090 MS.gene050955:intron
CTTCACCACTGGCAAGGGTA+AGG 0.533342 7.1:+3839279 MS.gene050955:CDS
TTGTTTCCAAGGACAAGGAA+AGG 0.535849 7.1:-3839196 None:intergenic
AAGAAAATGGGTTATGGTGA+TGG 0.542914 7.1:+3839358 MS.gene050955:CDS
TTGCCAATGATTCATCAGAA+AGG 0.547484 7.1:-3839168 None:intergenic
TTCTTAGGTCTCGACAACGC+CGG 0.556039 7.1:+3837084 MS.gene050955:CDS
GAGCAACTTCACCACTGGCA+AGG 0.556603 7.1:+3839273 MS.gene050955:CDS
AGCAACTTCACCACTGGCAA+GGG 0.561923 7.1:+3839274 MS.gene050955:CDS
ATTGTGAAGAAAATGGGTTA+TGG 0.564263 7.1:+3839352 MS.gene050955:CDS
CTGGAAAGATTACTATGCCC+AGG 0.565879 7.1:+3837827 MS.gene050955:CDS
CTTGGTTGATGCTTATGACA+AGG 0.569852 7.1:+3839108 MS.gene050955:CDS
AGACTCAAATGTCCGACCCA+TGG 0.577020 7.1:+3839312 MS.gene050955:CDS
GCTTGGATTATGGCAGAAAG+AGG 0.588367 7.1:+3837050 MS.gene050955:CDS
ATACTCAACTCTTCTGATGT+CGG 0.590024 7.1:-3837747 None:intergenic
TCTGATGTCGGATACTGAGT+CGG 0.590760 7.1:-3837735 None:intergenic
ACTGCACATGAATACCTCCA+TGG 0.596081 7.1:-3839329 None:intergenic
CTGCACATGAATACCTCCAT+GGG 0.601771 7.1:-3839328 None:intergenic
GTCTTTGAGCATATGAAGCA+AGG 0.603316 7.1:-3837115 None:intergenic
GCTTCATATGCTCAAAGACG+AGG 0.605146 7.1:+3837119 MS.gene050955:CDS
GTAACGCAATTCGTCTTCTG+AGG 0.630635 7.1:-3839239 None:intergenic
ATTTACCTTACCCTTGCCAG+TGG 0.635981 7.1:-3839284 None:intergenic
TGCAATGCAGGTAGATGCAG+TGG 0.654691 7.1:+3839081 MS.gene050955:intron
CTCAAATGTCCGACCCATGG+AGG 0.662910 7.1:+3839315 MS.gene050955:CDS
ACATGAATACCTCCATGGGT+CGG 0.682919 7.1:-3839324 None:intergenic
TTTGAGCATATGAAGCAAGG+TGG 0.690241 7.1:-3837112 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATGATAATAATAAG+TGG - chr7.1:3837161-3837180 None:intergenic 10.0%
!! TAATAATGATAATAATAAGT+GGG - chr7.1:3837160-3837179 None:intergenic 10.0%
!! ATATCTTAATCATGAAAATT+TGG + chr7.1:3837907-3837926 MS.gene050955:intron 15.0%
!! AGACATAATATAATATAGGA+AGG - chr7.1:3837944-3837963 None:intergenic 20.0%
!! AGCAATAGTATAAAATGAAA+AGG - chr7.1:3838932-3838951 None:intergenic 20.0%
!! TCAAAGTCAAATTAATTCAA+CGG - chr7.1:3838505-3838524 None:intergenic 20.0%
!! TCCAAGACATAATATAATAT+AGG - chr7.1:3837948-3837967 None:intergenic 20.0%
!! TCCTATATTATATTATGTCT+TGG + chr7.1:3837944-3837963 MS.gene050955:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG + chr7.1:3837780-3837799 MS.gene050955:CDS 20.0%
!!! ATAGAATATTTTGTAGTCAA+AGG + chr7.1:3837251-3837270 MS.gene050955:intron 20.0%
! ATACAATGGATAGAATAGAA+GGG - chr7.1:3838434-3838453 None:intergenic 25.0%
! ATTATATTATGTCTTGGACT+TGG + chr7.1:3837950-3837969 MS.gene050955:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - chr7.1:3838680-3838699 None:intergenic 25.0%
! TAAACATATCTCAACAAAAG+TGG - chr7.1:3837461-3837480 None:intergenic 25.0%
! TATACAATGGATAGAATAGA+AGG - chr7.1:3838435-3838454 None:intergenic 25.0%
! TCTTATGTTCTTTACCATAA+TGG + chr7.1:3838111-3838130 MS.gene050955:intron 25.0%
! TTATAAGCTACTGTATACAA+TGG - chr7.1:3838448-3838467 None:intergenic 25.0%
!! GTTTCTTTTATGATGAGAAT+TGG + chr7.1:3837686-3837705 MS.gene050955:intron 25.0%
!! TATTACCGATATTGTTCTTT+TGG + chr7.1:3837178-3837197 MS.gene050955:intron 25.0%
!!! AGTTTAAAGCTTTTGATTTG+GGG + chr7.1:3837781-3837800 MS.gene050955:CDS 25.0%
!!! CAAGTTTAAAGCTTTTGATT+TGG + chr7.1:3837779-3837798 MS.gene050955:CDS 25.0%
!!! GAATATCAATTTTGTTTCCA+AGG - chr7.1:3839210-3839229 None:intergenic 25.0%
!!! GTAACTTTATTTTGTTTGTG+TGG + chr7.1:3837979-3837998 MS.gene050955:intron 25.0%
!!! TTACTGTTGATAATGTTTTG+TGG + chr7.1:3837225-3837244 MS.gene050955:intron 25.0%
AAAATACTACTTCATGTTCG+AGG - chr7.1:3838788-3838807 None:intergenic 30.0%
AAATGACTGTGTTTCCATTA+TGG - chr7.1:3838128-3838147 None:intergenic 30.0%
AACACACCAAAACAAGTTAA+GGG - chr7.1:3837494-3837513 None:intergenic 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr7.1:3838213-3838232 MS.gene050955:intron 30.0%
AGAAACATTATACCAAGACT+CGG - chr7.1:3837672-3837691 None:intergenic 30.0%
AGATTCTAAGCCAATATCTT+AGG - chr7.1:3838058-3838077 None:intergenic 30.0%
AGTACCTTATAAGACATTTC+TGG + chr7.1:3838955-3838974 MS.gene050955:intron 30.0%
CCATTCCAAAAGAACAATAT+CGG - chr7.1:3837186-3837205 None:intergenic 30.0%
TATAGAACTGCCTAAGATAT+TGG + chr7.1:3838045-3838064 MS.gene050955:intron 30.0%
TCTCAGTTTAATATTGAGCA+GGG - chr7.1:3838881-3838900 None:intergenic 30.0%
TGAGATATGTTTATCCAAAC+AGG + chr7.1:3837468-3837487 MS.gene050955:intron 30.0%
TGCAGTATTGTGAAGAAAAT+GGG + chr7.1:3839346-3839365 MS.gene050955:CDS 30.0%
TGGTTTATGATAGAACACTA+TGG + chr7.1:3838257-3838276 MS.gene050955:intron 30.0%
TGTAAGAGAAACCATTAGAA+AGG + chr7.1:3838204-3838223 MS.gene050955:intron 30.0%
TTCTCAGTTTAATATTGAGC+AGG - chr7.1:3838882-3838901 None:intergenic 30.0%
TTTACACTTATTACTGTCAG+CGG + chr7.1:3837285-3837304 MS.gene050955:intron 30.0%
! AAACCATCAAGTTTGTTTCT+CGG - chr7.1:3838845-3838864 None:intergenic 30.0%
! CAATGAGTTGGATTCAAATA+TGG + chr7.1:3838237-3838256 MS.gene050955:intron 30.0%
! GTTTTGCTTATAATAGTGAC+CGG + chr7.1:3838715-3838734 MS.gene050955:intron 30.0%
! GTTTTGCTTATAATAGTGAC+CGG - chr7.1:3838734-3838715 None:intergenic 30.0%
!! AAGATTTGCTGAGTCAAAAA+AGG + chr7.1:3839132-3839151 MS.gene050955:CDS 30.0%
!! ACAAAAAAGTATTGAAGGCA+TGG - chr7.1:3837864-3837883 None:intergenic 30.0%
!! ATTGTGAAGAAAATGGGTTA+TGG + chr7.1:3839352-3839371 MS.gene050955:CDS 30.0%
!! TAGCCACAAAAAAGTATTGA+AGG - chr7.1:3837869-3837888 None:intergenic 30.0%
!! TTATGGTGATGGTTTCAAAT+GGG + chr7.1:3839369-3839388 MS.gene050955:CDS 30.0%
!!! ATGCCTTCAATACTTTTTTG+TGG + chr7.1:3837863-3837882 MS.gene050955:intron 30.0%
!!! ATTGTTCTTTTGGAATGGAA+CGG + chr7.1:3837188-3837207 MS.gene050955:intron 30.0%
!!! GTTTAAAGCTTTTGATTTGG+GGG + chr7.1:3837782-3837801 MS.gene050955:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+GGG + chr7.1:3837783-3837802 MS.gene050955:CDS 30.0%
!!! TTTTTGGTGGATTGGTTTTA+CGG + chr7.1:3837015-3837034 MS.gene050955:CDS 30.0%
ACATCAGAAGAGTTGAGTAT+TGG + chr7.1:3837750-3837769 MS.gene050955:CDS 35.0%
AGAAACCAGAAAAGATTACG+TGG - chr7.1:3837599-3837618 None:intergenic 35.0%
AGAGCCAGAAATGTCTTATA+AGG - chr7.1:3838962-3838981 None:intergenic 35.0%
AGATTAATACATACACCCTC+CGG + chr7.1:3838584-3838603 MS.gene050955:intron 35.0%
ATACTCAACTCTTCTGATGT+CGG - chr7.1:3837750-3837769 None:intergenic 35.0%
ATATCTTTATCTCCGAGTCT+TGG + chr7.1:3837657-3837676 MS.gene050955:intron 35.0%
ATGAAAATTTGGATGCCAGT+AGG + chr7.1:3837918-3837937 MS.gene050955:intron 35.0%
CAACACACCAAAACAAGTTA+AGG - chr7.1:3837495-3837514 None:intergenic 35.0%
CATCAGAAGAGTTGAGTATT+GGG + chr7.1:3837751-3837770 MS.gene050955:CDS 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr7.1:3838218-3838237 None:intergenic 35.0%
GAGGCTAAGATCTTATTCTT+AGG + chr7.1:3837069-3837088 MS.gene050955:CDS 35.0%
GTGCAGTATTGTGAAGAAAA+TGG + chr7.1:3839345-3839364 MS.gene050955:CDS 35.0%
TAACCGAGAAACAAACTTGA+TGG + chr7.1:3838839-3838858 MS.gene050955:intron 35.0%
TAATCAGATGTGCACATTCT+AGG + chr7.1:3838544-3838563 MS.gene050955:intron 35.0%
TATAATATAGGAAGGCCTAC+TGG - chr7.1:3837936-3837955 None:intergenic 35.0%
TCTCCTTTCTGATGAATCAT+TGG + chr7.1:3839165-3839184 MS.gene050955:CDS 35.0%
TTGCCAATGATTCATCAGAA+AGG - chr7.1:3839171-3839190 None:intergenic 35.0%
! AAACTTGATGGTTTGGACTT+TGG + chr7.1:3838851-3838870 MS.gene050955:intron 35.0%
! GAGAAACAAACTTGATGGTT+TGG + chr7.1:3838844-3838863 MS.gene050955:intron 35.0%
! TTGAGTTTGCTTGTTCAACT+AGG + chr7.1:3838521-3838540 MS.gene050955:intron 35.0%
!! AAGAAAATGGGTTATGGTGA+TGG + chr7.1:3839358-3839377 MS.gene050955:CDS 35.0%
!! CAATTTTGTTTCCAAGGACA+AGG - chr7.1:3839204-3839223 None:intergenic 35.0%
!! CCGATATTGTTCTTTTGGAA+TGG + chr7.1:3837183-3837202 MS.gene050955:intron 35.0%
!! GTTATGGTGATGGTTTCAAA+TGG + chr7.1:3839368-3839387 MS.gene050955:CDS 35.0%
!!! CTTTATTTTGTTTGTGTGGC+TGG + chr7.1:3837983-3838002 MS.gene050955:intron 35.0%
!!! TTTTGGTGGATTGGTTTTAC+GGG + chr7.1:3837016-3837035 MS.gene050955:CDS 35.0%
AAACAAGTTAAGGGCCTGTT+TGG - chr7.1:3837485-3837504 None:intergenic 40.0%
AACTGAGAAACATTACGTGC+TGG + chr7.1:3839019-3839038 MS.gene050955:intron 40.0%
AGACGAATTGCGTTACCATT+TGG + chr7.1:3839246-3839265 MS.gene050955:CDS 40.0%
ATCATGAGTTGTTGCAATGC+AGG + chr7.1:3839069-3839088 MS.gene050955:intron 40.0%
CAACGGCAGAAATGATTCAA+CGG - chr7.1:3838488-3838507 None:intergenic 40.0%
GACGAATTGCGTTACCATTT+GGG + chr7.1:3839247-3839266 MS.gene050955:CDS 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr7.1:3838225-3838244 MS.gene050955:intron 40.0%
GGTGTATACTCTACTTGCTT+TGG + chr7.1:3838740-3838759 MS.gene050955:intron 40.0%
GTATACTCTACTTGCTTTGG+TGG + chr7.1:3838743-3838762 MS.gene050955:intron 40.0%
GTCTTTGAGCATATGAAGCA+AGG - chr7.1:3837118-3837137 None:intergenic 40.0%
TGCTGAGTCAAAAAAGGAGT+TGG + chr7.1:3839138-3839157 MS.gene050955:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr7.1:3838719-3838738 MS.gene050955:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr7.1:3838738-3838719 None:intergenic 40.0%
TGTTTCCAAGGACAAGGAAA+GGG - chr7.1:3839198-3839217 None:intergenic 40.0%
TTCTAGCATCGCTTGGATTA+TGG + chr7.1:3837040-3837059 MS.gene050955:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr7.1:3838718-3838737 MS.gene050955:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr7.1:3838737-3838718 None:intergenic 40.0%
TTGTTTCCAAGGACAAGGAA+AGG - chr7.1:3839199-3839218 None:intergenic 40.0%
TTTGAGCATATGAAGCAAGG+TGG - chr7.1:3837115-3837134 None:intergenic 40.0%
! CTTGGTTGATGCTTATGACA+AGG + chr7.1:3839108-3839127 MS.gene050955:CDS 40.0%
! TTCGACCACGTAATCTTTTC+TGG + chr7.1:3837591-3837610 MS.gene050955:intron 40.0%
!!! AACAGGCCCTTAACTTGTTT+TGG + chr7.1:3837485-3837504 MS.gene050955:intron 40.0%
!!! TTGTTTTGGTGTGTTGCTCT+TGG + chr7.1:3837499-3837518 MS.gene050955:intron 40.0%
!!! TTTGGTGGATTGGTTTTACG+GGG + chr7.1:3837017-3837036 MS.gene050955:CDS 40.0%
AATGTCCCTTTCCTTGTCCT+TGG + chr7.1:3839190-3839209 MS.gene050955:CDS 45.0%
ACATGAATACCTCCATGGGT+CGG - chr7.1:3839327-3839346 None:intergenic 45.0%
ACTGCACATGAATACCTCCA+TGG - chr7.1:3839332-3839351 None:intergenic 45.0%
ATCAGATTGCTCGTAGAGTC+TGG + chr7.1:3837808-3837827 MS.gene050955:CDS 45.0%
ATTTACCTTACCCTTGCCAG+TGG - chr7.1:3839287-3839306 None:intergenic 45.0%
CAAGTAGAGTATACACCCTC+CGG - chr7.1:3838737-3838756 None:intergenic 45.0%
CTGCACATGAATACCTCCAT+GGG - chr7.1:3839331-3839350 None:intergenic 45.0%
CTGGAAAGATTACTATGCCC+AGG + chr7.1:3837827-3837846 MS.gene050955:CDS 45.0%
GCATGGAAAAAGAGAGACCT+GGG - chr7.1:3837847-3837866 None:intergenic 45.0%
GCTTCATATGCTCAAAGACG+AGG + chr7.1:3837119-3837138 MS.gene050955:CDS 45.0%
GCTTGGATTATGGCAGAAAG+AGG + chr7.1:3837050-3837069 MS.gene050955:CDS 45.0%
GTAACGCAATTCGTCTTCTG+AGG - chr7.1:3839242-3839261 None:intergenic 45.0%
TCTGATGTCGGATACTGAGT+CGG - chr7.1:3837738-3837757 None:intergenic 45.0%
TGAAGTTGCTCAAGCCCAAA+TGG - chr7.1:3839264-3839283 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7.1:3838306-3838325 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7.1:3838307-3838326 None:intergenic 45.0%
! TACTGTCAGCGGAGTTTTCT+AGG + chr7.1:3837296-3837315 MS.gene050955:intron 45.0%
!! ATGAAGCAAGGTGGTTTTGC+CGG - chr7.1:3837106-3837125 None:intergenic 45.0%
!! TTTTGTTTGTGTGGCTGGAC+TGG + chr7.1:3837988-3838007 MS.gene050955:intron 45.0%
ACTAAGTGGGGTCAGGTACA+TGG - chr7.1:3838294-3838313 None:intergenic 50.0%
AGACTCAAATGTCCGACCCA+TGG + chr7.1:3839312-3839331 MS.gene050955:CDS 50.0%
AGCAACTTCACCACTGGCAA+GGG + chr7.1:3839274-3839293 MS.gene050955:CDS 50.0%
ATGTACCTGACCCCACTTAG+TGG + chr7.1:3838293-3838312 MS.gene050955:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7.1:3838305-3838324 MS.gene050955:intron 50.0%
GGCATGGAAAAAGAGAGACC+TGG - chr7.1:3837848-3837867 None:intergenic 50.0%
GGTAGATGCAGTGGTCTACT+TGG + chr7.1:3839090-3839109 MS.gene050955:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG + chr7.1:3838300-3838319 MS.gene050955:intron 50.0%
TGCAATGCAGGTAGATGCAG+TGG + chr7.1:3839081-3839100 MS.gene050955:intron 50.0%
TGTACCTGACCCCACTTAGT+GGG + chr7.1:3838294-3838313 MS.gene050955:intron 50.0%
TTATCCCACTAAGTGGGGTC+AGG - chr7.1:3838301-3838320 None:intergenic 50.0%
TTCTTAGGTCTCGACAACGC+CGG + chr7.1:3837084-3837103 MS.gene050955:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7.1:3838308-3838327 None:intergenic 50.0%
!! TCGTCTTCTGAGGCAGCATA+TGG - chr7.1:3839232-3839251 None:intergenic 50.0%
CTCAAATGTCCGACCCATGG+AGG + chr7.1:3839315-3839334 MS.gene050955:CDS 55.0%
CTTCACCACTGGCAAGGGTA+AGG + chr7.1:3839279-3839298 MS.gene050955:CDS 55.0%
GAGCAACTTCACCACTGGCA+AGG + chr7.1:3839273-3839292 MS.gene050955:CDS 55.0%
GATACTGAGTCGGCTGATGC+TGG - chr7.1:3837728-3837747 None:intergenic 55.0%
GGCTTGAGCAACTTCACCAC+TGG + chr7.1:3839268-3839287 MS.gene050955:CDS 55.0%
! TACGGGGTTCTAGCATCGCT+TGG + chr7.1:3837033-3837052 MS.gene050955:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 3837012 3839411 3837012 ID=MS.gene050955
chr7.1 mRNA 3837012 3839411 3837012 ID=MS.gene050955.t1;Parent=MS.gene050955
chr7.1 exon 3837012 3837140 3837012 ID=MS.gene050955.t1.exon1;Parent=MS.gene050955.t1
chr7.1 CDS 3837012 3837140 3837012 ID=cds.MS.gene050955.t1;Parent=MS.gene050955.t1
chr7.1 exon 3837717 3837848 3837717 ID=MS.gene050955.t1.exon2;Parent=MS.gene050955.t1
chr7.1 CDS 3837717 3837848 3837717 ID=cds.MS.gene050955.t1;Parent=MS.gene050955.t1
chr7.1 exon 3839091 3839411 3839091 ID=MS.gene050955.t1.exon3;Parent=MS.gene050955.t1
chr7.1 CDS 3839091 3839411 3839091 ID=cds.MS.gene050955.t1;Parent=MS.gene050955.t1
Gene Sequence

>MS.gene050955

ATGTTTTTGGTGGATTGGTTTTACGGGGTTCTAGCATCGCTTGGATTATGGCAGAAAGAGGCTAAGATCTTATTCTTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCATATGCTCAAAGACGAGGTTTGTTCTTCAATTTCCCACTTATTATTATCATTATTATTACCGATATTGTTCTTTTGGAATGGAACGGATCTGTGATCTTATTTACTGTTGATAATGTTTTGTGGTTAATAGAATATTTTGTAGTCAAAGGAGTTCATGATTTTTACACTTATTACTGTCAGCGGAGTTTTCTAGGATCAATATGATATATTATACATGTTTCTGAGAAATTTCGCAATTGTGTTACTTAGATACTCAATCAACATAATTTCATTTGCTCTTAGTTTAAAATTATTTCGCAGTTTTCTAAAATATTGATTAATTTCTCAGTTTTTCCACTTTTGTTGAGATATGTTTATCCAAACAGGCCCTTAACTTGTTTTGGTGTGTTGCTCTTGGTCTCTTATCTTGACATCTAGCATCTGTTTTAAAATTTTATTGTGATTGCTCATATCTGTATTATTTTGTTTCGACCACGTAATCTTTTCTGGTTTCTGCAAGCAATGCATTTTGATAGTTAGCAAGCGTGTGTCTATATCTTTATCTCCGAGTCTTGGTATAATGTTTCTTTTATGATGAGAATTGGTTTTGCAGAGATTAGTCCAGCATCAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGGGGTCATCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTCTCTCTTTTTCCATGCCTTCAATACTTTTTTGTGGCTAGTGTAGCAAAGTGAGAGAATATCTTAATCATGAAAATTTGGATGCCAGTAGGCCTTCCTATATTATATTATGTCTTGGACTTGGAAACATGTAACTTTATTTTGTTTGTGTGGCTGGACTGGCTAATTTGTGTGTTTATCAGTTAGTGATTTCAGATATAGAACTGCCTAAGATATTGGCTTAGAATCTACAAACAAATTCTAACTGTCATGAAGATTTTATTCTTATGTTCTTTACCATAATGGAAACACAGTCATTTAGTTTTTAAAAAAGTAAATAAATTATTGACAAATTTTTAGTTTTTAAAAATATTATTGTAAGAGAAACCATTAGAAAGGATTTAGAGGTCAATGAGTTGGATTCAAATATGGTTTATGATAGAACACTATGGCGTAATTTGATCCATGTACCTGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTAAAATATTATTGTAAAAAATAACTACTATCTTGTTGCAGAATGTTCTTATATCTAACAAATTACATGAATGCAGCTTAAGCTAAAGATTTATGCCCTTCTATTCTATCCATTGTATACAGTAGCTTATAATTTATAAGACATTTCTGCCGTTGAATCATTTCTGCCGTTGAATTAATTTGACTTTGAGTTTGCTTGTTCAACTAGGTAATCAGATGTGCACATTCTAGGAAGAATTATTTCATAAGAGATTAATACATACACCCTCCGGTCACTATTATAAGCAAAACTTTGCATTTTAGATTCATTCAATTAATGATGTATATAGTCTTTATTATAGACCACATACATCATTTAATGAATGAATCTAAAATGCAAAGTTTTGCTTATAATAGTGACCGGAGGGTGTATACTCTACTTGCTTTGGTGGTAGAATCTAATTCAATGCACCTCGAACATGAAGTAGTATTTTGTAGCTTTGTTACTACAAAAGTTCAATGTTTTAACCGAGAAACAAACTTGATGGTTTGGACTTTGGTGTTCCCTGCTCAATATTAAACTGAGAAACAAACATGATGAGTTGCTGATAGCTGCCTTTTCATTTTATACTATTGCTTACAGTACCTTATAAGACATTTCTGGCTCTGAATCAATTTACAACTTAGTAACTTGTTCAATATTTTAACTGAGAAACATTACGTGCTGGTGCTCATTATTTTTTTACTTCATTGTGATCATGAGTTGTTGCAATGCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAATCATTGGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGCTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGTCAGACTCAAATGTCCGACCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGTGATGGTTTCAAATGGGTTTCTCAGTACATCAAATAG

Protein sequence

>MS.gene050955.t1

MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK