AlfalfaGEDB | MS.gene050955

M. sativa cultivar XinJiangDaYe / MS.gene050955

KEGG: K07953
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0071702 GO:0071705 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00025.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050955.t1	XP_013450457.1	99.5	193	1	0	1	193	1	193	3.90E-106	394

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050955.t1	O04834	94.8	193	10	0	1	193	1	193	9.7e-106	384.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050955.t1	A0A072UFB5	99.5	193	1	0	1	193	1	193	2.8e-106	394.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene050955	0.810153	1.33E-50	-1.69E-46
MS.gene049680	MS.gene050955	0.859569	3.78E-63	-1.69E-46
MS.gene05029	MS.gene050955	0.849939	2.34E-60	-1.69E-46
MS.gene050437	MS.gene050955	0.872199	3.82E-67	-1.69E-46
MS.gene050752	MS.gene050955	0.972755	2.75E-135	-1.69E-46
MS.gene050838	MS.gene050955	0.825695	4.07E-54	-1.69E-46
MS.gene050945	MS.gene050955	0.815915	7.24E-52	-1.69E-46
MS.gene050955	MS.gene051003	0.890481	9.47E-74	-1.69E-46
MS.gene050955	MS.gene051234	0.870804	1.11E-66	-1.69E-46
MS.gene050955	MS.gene051241	0.827885	1.22E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050955.t1	MTR_7g112090	99.482	193	1	0	1	193	1	193	4.70e-143	396
MS.gene050955.t1	MTR_2g034640	93.264	193	13	0	1	193	1	193	1.45e-137	382
MS.gene050955.t1	MTR_4g121860	89.637	193	20	0	1	193	1	193	1.15e-133	372
MS.gene050955.t1	MTR_4g128910	33.523	176	105	1	18	193	15	178	6.39e-28	103
MS.gene050955.t1	MTR_5g016540	32.203	177	104	2	18	192	15	177	2.46e-25	97.1
MS.gene050955.t1	MTR_6g005820	31.073	177	106	2	18	192	15	177	4.83e-24	93.6
MS.gene050955.t1	MTR_5g034130	31.073	177	106	2	18	192	15	177	5.15e-24	93.6
MS.gene050955.t1	MTR_5g034125	31.073	177	106	2	18	192	15	177	5.15e-24	93.6
MS.gene050955.t1	MTR_7g109960	31.073	177	106	2	18	192	15	177	5.37e-24	93.6
MS.gene050955.t1	MTR_1g086480	31.073	177	106	2	18	192	15	177	5.37e-24	93.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050955.t1	AT4G02080	94.819	193	10	0	1	193	1	193	5.24e-139	386
MS.gene050955.t1	AT3G62560	93.750	192	12	0	1	192	1	192	1.61e-136	379
MS.gene050955.t1	AT1G56330	91.667	192	16	0	1	192	1	192	1.01e-133	372
MS.gene050955.t1	AT1G09180	87.047	193	25	0	1	193	1	193	6.08e-127	355
MS.gene050955.t1	AT1G02620	87.387	111	14	0	83	193	12	122	8.84e-71	211
MS.gene050955.t1	AT2G24765	34.091	176	104	1	18	193	15	178	1.13e-27	103
MS.gene050955.t1	AT3G49870	38.562	153	92	2	1	152	1	152	3.95e-26	99.4
MS.gene050955.t1	AT5G67560	36.424	151	90	2	3	152	7	152	5.03e-25	96.3
MS.gene050955.t1	AT3G49870	40.310	129	76	1	25	152	5	133	1.54e-24	94.7
MS.gene050955.t1	AT2G47170	31.016	187	113	2	8	192	5	177	2.04e-24	94.7

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Find 44 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAATGGGTTATGGTGA+TGG	0.542914	7.1:+3839358	MS.gene050955:CDS
AATGTCCCTTTCCTTGTCCT+TGG	0.407599	7.1:+3839190	MS.gene050955:CDS
ACATCAGAAGAGTTGAGTAT+TGG	0.487462	7.1:+3837750	MS.gene050955:CDS
ACATGAATACCTCCATGGGT+CGG	0.682919	7.1:-3839324	None:intergenic
ACTGCACATGAATACCTCCA+TGG	0.596081	7.1:-3839329	None:intergenic
AGACGAATTGCGTTACCATT+TGG	0.332275	7.1:+3839246	MS.gene050955:CDS
AGACTCAAATGTCCGACCCA+TGG	0.577020	7.1:+3839312	MS.gene050955:CDS
AGCAACTTCACCACTGGCAA+GGG	0.561923	7.1:+3839274	MS.gene050955:CDS
ATACTCAACTCTTCTGATGT+CGG	0.590024	7.1:-3837747	None:intergenic
ATCAGATTGCTCGTAGAGTC+TGG	0.419780	7.1:+3837808	MS.gene050955:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACTACTTCATGTTCG+AGG	-	chr7.1:3838788-3838807	None:intergenic	30.0%
AAATGACTGTGTTTCCATTA+TGG	-	chr7.1:3838128-3838147	None:intergenic	30.0%
AACACACCAAAACAAGTTAA+GGG	-	chr7.1:3837494-3837513	None:intergenic	30.0%
AACCATTAGAAAGGATTTAG+AGG	+	chr7.1:3838213-3838232	MS.gene050955:intron	30.0%
AGAAACATTATACCAAGACT+CGG	-	chr7.1:3837672-3837691	None:intergenic	30.0%
AGATTCTAAGCCAATATCTT+AGG	-	chr7.1:3838058-3838077	None:intergenic	30.0%
AGTACCTTATAAGACATTTC+TGG	+	chr7.1:3838955-3838974	MS.gene050955:intron	30.0%
CCATTCCAAAAGAACAATAT+CGG	-	chr7.1:3837186-3837205	None:intergenic	30.0%
TATAGAACTGCCTAAGATAT+TGG	+	chr7.1:3838045-3838064	MS.gene050955:intron	30.0%
TCTCAGTTTAATATTGAGCA+GGG	-	chr7.1:3838881-3838900	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	3837012	3839411	3837012	ID=MS.gene050955
chr7.1	mRNA	3837012	3839411	3837012	ID=MS.gene050955.t1;Parent=MS.gene050955
chr7.1	exon	3837012	3837140	3837012	ID=MS.gene050955.t1.exon1;Parent=MS.gene050955.t1
chr7.1	CDS	3837012	3837140	3837012	ID=cds.MS.gene050955.t1;Parent=MS.gene050955.t1
chr7.1	exon	3837717	3837848	3837717	ID=MS.gene050955.t1.exon2;Parent=MS.gene050955.t1
chr7.1	CDS	3837717	3837848	3837717	ID=cds.MS.gene050955.t1;Parent=MS.gene050955.t1
chr7.1	exon	3839091	3839411	3839091	ID=MS.gene050955.t1.exon3;Parent=MS.gene050955.t1
chr7.1	CDS	3839091	3839411	3839091	ID=cds.MS.gene050955.t1;Parent=MS.gene050955.t1

Gene Sequence

>MS.gene050955

ATGTTTTTGGTGGATTGGTTTTACGGGGTTCTAGCATCGCTTGGATTATGGCAGAAAGAGGCTAAGATCTTATTCTTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCATATGCTCAAAGACGAGGTTTGTTCTTCAATTTCCCACTTATTATTATCATTATTATTACCGATATTGTTCTTTTGGAATGGAACGGATCTGTGATCTTATTTACTGTTGATAATGTTTTGTGGTTAATAGAATATTTTGTAGTCAAAGGAGTTCATGATTTTTACACTTATTACTGTCAGCGGAGTTTTCTAGGATCAATATGATATATTATACATGTTTCTGAGAAATTTCGCAATTGTGTTACTTAGATACTCAATCAACATAATTTCATTTGCTCTTAGTTTAAAATTATTTCGCAGTTTTCTAAAATATTGATTAATTTCTCAGTTTTTCCACTTTTGTTGAGATATGTTTATCCAAACAGGCCCTTAACTTGTTTTGGTGTGTTGCTCTTGGTCTCTTATCTTGACATCTAGCATCTGTTTTAAAATTTTATTGTGATTGCTCATATCTGTATTATTTTGTTTCGACCACGTAATCTTTTCTGGTTTCTGCAAGCAATGCATTTTGATAGTTAGCAAGCGTGTGTCTATATCTTTATCTCCGAGTCTTGGTATAATGTTTCTTTTATGATGAGAATTGGTTTTGCAGAGATTAGTCCAGCATCAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGGGGTCATCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTCTCTCTTTTTCCATGCCTTCAATACTTTTTTGTGGCTAGTGTAGCAAAGTGAGAGAATATCTTAATCATGAAAATTTGGATGCCAGTAGGCCTTCCTATATTATATTATGTCTTGGACTTGGAAACATGTAACTTTATTTTGTTTGTGTGGCTGGACTGGCTAATTTGTGTGTTTATCAGTTAGTGATTTCAGATATAGAACTGCCTAAGATATTGGCTTAGAATCTACAAACAAATTCTAACTGTCATGAAGATTTTATTCTTATGTTCTTTACCATAATGGAAACACAGTCATTTAGTTTTTAAAAAAGTAAATAAATTATTGACAAATTTTTAGTTTTTAAAAATATTATTGTAAGAGAAACCATTAGAAAGGATTTAGAGGTCAATGAGTTGGATTCAAATATGGTTTATGATAGAACACTATGGCGTAATTTGATCCATGTACCTGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTAAAATATTATTGTAAAAAATAACTACTATCTTGTTGCAGAATGTTCTTATATCTAACAAATTACATGAATGCAGCTTAAGCTAAAGATTTATGCCCTTCTATTCTATCCATTGTATACAGTAGCTTATAATTTATAAGACATTTCTGCCGTTGAATCATTTCTGCCGTTGAATTAATTTGACTTTGAGTTTGCTTGTTCAACTAGGTAATCAGATGTGCACATTCTAGGAAGAATTATTTCATAAGAGATTAATACATACACCCTCCGGTCACTATTATAAGCAAAACTTTGCATTTTAGATTCATTCAATTAATGATGTATATAGTCTTTATTATAGACCACATACATCATTTAATGAATGAATCTAAAATGCAAAGTTTTGCTTATAATAGTGACCGGAGGGTGTATACTCTACTTGCTTTGGTGGTAGAATCTAATTCAATGCACCTCGAACATGAAGTAGTATTTTGTAGCTTTGTTACTACAAAAGTTCAATGTTTTAACCGAGAAACAAACTTGATGGTTTGGACTTTGGTGTTCCCTGCTCAATATTAAACTGAGAAACAAACATGATGAGTTGCTGATAGCTGCCTTTTCATTTTATACTATTGCTTACAGTACCTTATAAGACATTTCTGGCTCTGAATCAATTTACAACTTAGTAACTTGTTCAATATTTTAACTGAGAAACATTACGTGCTGGTGCTCATTATTTTTTTACTTCATTGTGATCATGAGTTGTTGCAATGCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAATCATTGGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGCTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGTCAGACTCAAATGTCCGACCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGTGATGGTTTCAAATGGGTTTCTCAGTACATCAAATAG

Protein sequence

>MS.gene050955.t1

MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK