Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83189.t1 | XP_013451091.1 | 97.9 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 4.00E-103 | 384 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83189.t1 | Q96MD7 | 40.0 | 95 | 51 | 2 | 6 | 99 | 10 | 99 | 1.8e-14 | 80.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83189.t1 | A0A072U6W9 | 97.9 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 2.9e-103 | 384.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054291 | MS.gene83189 | 0.802421 | 5.65E-49 | -1.69E-46 |
| MS.gene055453 | MS.gene83189 | 0.812836 | 3.47E-51 | -1.69E-46 |
| MS.gene055455 | MS.gene83189 | 0.828477 | 8.80E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene026677 | MS.gene83189 | PPI |
| MS.gene83189 | MS.gene33653 | PPI |
| MS.gene83189 | MS.gene31853 | PPI |
| MS.gene93153 | MS.gene83189 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83189.t1 | MTR_6g015855 | 97.895 | 190 | 4 | 0 | 1 | 190 | 1 | 190 | 3.15e-139 | 388 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83189.t1 | AT3G02220 | 67.232 | 177 | 58 | 0 | 4 | 180 | 2 | 178 | 4.03e-87 | 256 |
Find 39 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAATCTTGTTCTGATGTT+TGG | 0.198438 | 6.3:-10612032 | None:intergenic |
| TAATCTTCCAAGGAAGAATT+TGG | 0.218122 | 6.3:-10614757 | None:intergenic |
| GCAATCTTGTTCTGATGTTT+GGG | 0.223992 | 6.3:-10612031 | None:intergenic |
| TCTCTCGCTAGCGTTCTTAA+TGG | 0.244660 | 6.3:-10613649 | None:intergenic |
| ACTTACCAAAACACAAATTA+TGG | 0.278010 | 6.3:-10612520 | None:intergenic |
| GCTTACCATAATTTGTGTTT+TGG | 0.291297 | 6.3:+10612515 | MS.gene83189:CDS |
| AGTATCTTACTGCACGCAAT+AGG | 0.311523 | 6.3:-10613683 | None:intergenic |
| AGACCTTTATCTGAGATAAC+TGG | 0.364849 | 6.3:+10612237 | MS.gene83189:CDS |
| ATTGATTGGAAACGACGTTA+TGG | 0.377560 | 6.3:+10612285 | MS.gene83189:CDS |
| CGGGGTGTCTGTTGAACTCT+TGG | 0.378042 | 6.3:-10614698 | None:intergenic |
| TTGATCTTGATACCAGCATT+AGG | 0.386924 | 6.3:-10612061 | None:intergenic |
| ATGAGTACCGGCAAGAAAAC+TGG | 0.403904 | 6.3:+10612004 | MS.gene83189:CDS |
| TTTGCAGAAATTACATTGTA+GGG | 0.438951 | 6.3:+10614994 | MS.gene83189:intron |
| GCTGTAAGGAACAAATTGAT+TGG | 0.439014 | 6.3:+10612271 | MS.gene83189:CDS |
| ATTATTTCCAAATTCTTCCT+TGG | 0.447052 | 6.3:+10614750 | MS.gene83189:CDS |
| TGGAGTGTGCCCTCGCTGTA+AGG | 0.457705 | 6.3:+10612257 | MS.gene83189:CDS |
| ACTCCAGTTATCTCAGATAA+AGG | 0.465886 | 6.3:-10612240 | None:intergenic |
| AACATCAGAACAAGATTGCT+TGG | 0.468716 | 6.3:+10612035 | MS.gene83189:CDS |
| AACACAAATTATGGTAAGCT+TGG | 0.472000 | 6.3:-10612511 | None:intergenic |
| ACAAAATAGTACCATTTGGC+AGG | 0.479661 | 6.3:-10612330 | None:intergenic |
| CACAATACAATACAGGAAGT+TGG | 0.490286 | 6.3:+10612204 | MS.gene83189:intron |
| GTATCTTACTGCACGCAATA+GGG | 0.492693 | 6.3:-10613682 | None:intergenic |
| CTCTTCATGAACCTGCCAAA+TGG | 0.510075 | 6.3:+10612319 | MS.gene83189:CDS |
| TGCCGTGTGGAGCGTATAGT+TGG | 0.518767 | 6.3:+10613268 | MS.gene83189:CDS |
| GATACAAAAGATAACAAAGT+AGG | 0.537979 | 6.3:+10614724 | MS.gene83189:CDS |
| ATCTTGTTCTGATGTTTGGG+GGG | 0.541127 | 6.3:-10612028 | None:intergenic |
| CAATCTTGTTCTGATGTTTG+GGG | 0.555523 | 6.3:-10612030 | None:intergenic |
| CGCAAAGTGTTGTTGCCGTG+TGG | 0.556409 | 6.3:+10613255 | MS.gene83189:CDS |
| CATTTGGCAGGTTCATGAAG+AGG | 0.559116 | 6.3:-10612318 | None:intergenic |
| TAGGGACGTTTCAGAAGTTG+AGG | 0.568147 | 6.3:+10613475 | MS.gene83189:intron |
| ATTGCTTGGAAACCTAATGC+TGG | 0.569537 | 6.3:+10612049 | MS.gene83189:CDS |
| CAATTTGTTCCTTACAGCGA+GGG | 0.578776 | 6.3:-10612266 | None:intergenic |
| AATCTTGTTCTGATGTTTGG+GGG | 0.588157 | 6.3:-10612029 | None:intergenic |
| GAAGTAGTGAAGATGAGTAC+CGG | 0.594604 | 6.3:+10611992 | None:intergenic |
| AATACAATACAGGAAGTTGG+AGG | 0.627150 | 6.3:+10612207 | MS.gene83189:intron |
| GTGTGGAGCGTATAGTTGGA+AGG | 0.650040 | 6.3:+10613272 | MS.gene83189:CDS |
| TTCCAACTATACGCTCCACA+CGG | 0.655201 | 6.3:-10613270 | None:intergenic |
| TCAATTTGTTCCTTACAGCG+AGG | 0.657795 | 6.3:-10612267 | None:intergenic |
| TGTTTGTGTAGGTTGTGCGA+AGG | 0.667969 | 6.3:+10613219 | MS.gene83189:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGTAAATATACAAAA+AGG | - | chr6.3:10612365-10612384 | None:intergenic | 10.0% |
| !! | TAAAATACAAATAATCAAAA+AGG | - | chr6.3:10613185-10613204 | None:intergenic | 10.0% |
| !! | AATTAGTATAAAACTGAAAA+TGG | + | chr6.3:10613154-10613173 | MS.gene83189:intron | 15.0% |
| !! | ATTAGTATAAAACTGAAAAT+GGG | + | chr6.3:10613155-10613174 | MS.gene83189:intron | 15.0% |
| !!! | ATTATTTGTATTTTACTGAT+TGG | + | chr6.3:10613190-10613209 | MS.gene83189:intron | 15.0% |
| !!! | TTGATCTTTCTTTTTATTTT+GGG | + | chr6.3:10612566-10612585 | MS.gene83189:intron | 15.0% |
| !!! | TTTGATCTTTCTTTTTATTT+TGG | + | chr6.3:10612565-10612584 | MS.gene83189:intron | 15.0% |
| !! | AAAAACAAAATAGTACCATT+TGG | - | chr6.3:10612337-10612356 | None:intergenic | 20.0% |
| !! | CATATCATACGAATATTAAT+AGG | - | chr6.3:10612904-10612923 | None:intergenic | 20.0% |
| !! | CTATATACATTATTATGTTG+AGG | + | chr6.3:10613926-10613945 | MS.gene83189:intron | 20.0% |
| !! | CTATTAATATTCGTATGATA+TGG | + | chr6.3:10612902-10612921 | MS.gene83189:intron | 20.0% |
| !! | GAAATATGATTGAACATTTA+AGG | + | chr6.3:10613094-10613113 | MS.gene83189:intron | 20.0% |
| !! | GCTAAATTATTAGTTGAATA+TGG | + | chr6.3:10612609-10612628 | MS.gene83189:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+GGG | - | chr6.3:10614334-10614353 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTATAAGCTGTTT+TGG | + | chr6.3:10614420-10614439 | MS.gene83189:intron | 20.0% |
| !!! | GTTTTATACTAATTTCATCT+AGG | - | chr6.3:10613148-10613167 | None:intergenic | 20.0% |
| !!! | TGATCTTTCTTTTTATTTTG+GGG | + | chr6.3:10612567-10612586 | MS.gene83189:intron | 20.0% |
| !!! | TTATTGGTTTAAATCATTGT+GGG | - | chr6.3:10614211-10614230 | None:intergenic | 20.0% |
| ! | AACTAAAAGAGATGCAAAAA+GGG | - | chr6.3:10613544-10613563 | None:intergenic | 25.0% |
| ! | ACTTACCAAAACACAAATTA+TGG | - | chr6.3:10612523-10612542 | None:intergenic | 25.0% |
| ! | AGTTGAATATGGAAAAAAGT+TGG | + | chr6.3:10612620-10612639 | MS.gene83189:intron | 25.0% |
| ! | ATTATTTCCAAATTCTTCCT+TGG | + | chr6.3:10614750-10614769 | MS.gene83189:CDS | 25.0% |
| ! | CAAATTATGTCATGATTAGA+TGG | - | chr6.3:10613760-10613779 | None:intergenic | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | + | chr6.3:10614062-10614081 | MS.gene83189:intron | 25.0% |
| ! | CATTCATTAAATGATGTATG+TGG | - | chr6.3:10614081-10614062 | None:intergenic | 25.0% |
| ! | GATACAAAAGATAACAAAGT+AGG | + | chr6.3:10614724-10614743 | MS.gene83189:CDS | 25.0% |
| ! | GCAGAATTAGTATATACATT+TGG | + | chr6.3:10612755-10612774 | MS.gene83189:intron | 25.0% |
| ! | GTATGATATGGAAGAAATAA+TGG | + | chr6.3:10612914-10612933 | MS.gene83189:intron | 25.0% |
| ! | TAAGTACTTATAAGACTGTT+TGG | - | chr6.3:10614509-10614528 | None:intergenic | 25.0% |
| ! | TGTAAAAAAATGAATAGCCT+TGG | - | chr6.3:10613713-10613732 | None:intergenic | 25.0% |
| ! | TTTGGAAAAGATTACGAAAA+GGG | - | chr6.3:10614491-10614510 | None:intergenic | 25.0% |
| !! | AAAAGAAAAAAGGGTGATTT+TGG | - | chr6.3:10612117-10612136 | None:intergenic | 25.0% |
| !! | AGTTCAGTAATATCTTTTGA+CGG | + | chr6.3:10613864-10613883 | MS.gene83189:intron | 25.0% |
| !! | ATGAATTTTTGCTTCTTGTA+GGG | + | chr6.3:10613457-10613476 | MS.gene83189:intron | 25.0% |
| !! | ATGGAAAAAAGTTGGATTTT+TGG | + | chr6.3:10612628-10612647 | MS.gene83189:intron | 25.0% |
| !! | CATTAAGTTGTTTATCCAAA+AGG | - | chr6.3:10614335-10614354 | None:intergenic | 25.0% |
| !! | GATTGATTCATTAGTTAACT+GGG | + | chr6.3:10612431-10612450 | MS.gene83189:intron | 25.0% |
| !! | TATGAATTTTTGCTTCTTGT+AGG | + | chr6.3:10613456-10613475 | MS.gene83189:intron | 25.0% |
| !! | TGATTGATTCATTAGTTAAC+TGG | + | chr6.3:10612430-10612449 | MS.gene83189:intron | 25.0% |
| !! | TGGAAAAAAGTTGGATTTTT+GGG | + | chr6.3:10612629-10612648 | MS.gene83189:intron | 25.0% |
| !! | TTGTTATCTTTTGTATCTGT+CGG | - | chr6.3:10614721-10614740 | None:intergenic | 25.0% |
| !! | TTTTCCTTTGTTGAGTATTT+AGG | - | chr6.3:10613419-10613438 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr6.3:10614027-10614046 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr6.3:10614136-10614155 | MS.gene83189:intron | 25.0% |
| !!! | ATAATGGATTTTTAGTAGTG+TGG | + | chr6.3:10612930-10612949 | MS.gene83189:intron | 25.0% |
| !!! | ATTGGTTTTTATGTTTGTGT+AGG | + | chr6.3:10613208-10613227 | MS.gene83189:intron | 25.0% |
| !!! | CTTATTGGTTTAAATCATTG+TGG | - | chr6.3:10614212-10614231 | None:intergenic | 25.0% |
| !!! | TATTTTGGGGATTTGTTAAA+TGG | + | chr6.3:10612580-10612599 | MS.gene83189:intron | 25.0% |
| !!! | TTTGTTTTGTTCCCATTTTT+TGG | + | chr6.3:10612395-10612414 | MS.gene83189:intron | 25.0% |
| AAACAGACCCGAAATTAATA+CGG | + | chr6.3:10614559-10614578 | MS.gene83189:intron | 30.0% | |
| AACACAAATTATGGTAAGCT+TGG | - | chr6.3:10612514-10612533 | None:intergenic | 30.0% | |
| AATGAAAGAGTAACCAATTC+AGG | + | chr6.3:10613340-10613359 | MS.gene83189:intron | 30.0% | |
| ACCGTTTAACAAATTCAACT+TGG | - | chr6.3:10613832-10613851 | None:intergenic | 30.0% | |
| ACTAAAAGAGATGCAAAAAG+GGG | - | chr6.3:10613543-10613562 | None:intergenic | 30.0% | |
| ATCAACGAAATGCCAAAAAA+TGG | - | chr6.3:10612410-10612429 | None:intergenic | 30.0% | |
| ATGTTACAAACAACCTGAAT+TGG | - | chr6.3:10613356-10613375 | None:intergenic | 30.0% | |
| CAAAGGAAAAAGATGAATCT+TGG | + | chr6.3:10613429-10613448 | MS.gene83189:intron | 30.0% | |
| CAACAAACCAAACAACAAAA+AGG | - | chr6.3:10612461-10612480 | None:intergenic | 30.0% | |
| CAACTAAAAGAGATGCAAAA+AGG | - | chr6.3:10613545-10613564 | None:intergenic | 30.0% | |
| CCGTTTAACAAATTCAACTT+GGG | - | chr6.3:10613831-10613850 | None:intergenic | 30.0% | |
| GAACATGTCTAACATTCAAA+AGG | - | chr6.3:10613580-10613599 | None:intergenic | 30.0% | |
| GAAGATTATGCCAAAAAGAA+TGG | + | chr6.3:10614772-10614791 | MS.gene83189:CDS | 30.0% | |
| GAGGCTGAAAGAAAAAAAAA+AGG | + | chr6.3:10612952-10612971 | MS.gene83189:intron | 30.0% | |
| GATTTGAACTAGTAACACAA+TGG | + | chr6.3:10613057-10613076 | MS.gene83189:intron | 30.0% | |
| GTAAAAACAGTGAGTGTAAA+CGG | + | chr6.3:10613031-10613050 | MS.gene83189:intron | 30.0% | |
| GTAATCACACAATACAATAC+AGG | + | chr6.3:10612197-10612216 | MS.gene83189:intron | 30.0% | |
| GTAGAAACTCGAAATAATAC+TGG | + | chr6.3:10613611-10613630 | MS.gene83189:intron | 30.0% | |
| GTTTGGAAAAGATTACGAAA+AGG | - | chr6.3:10614492-10614511 | None:intergenic | 30.0% | |
| TAAGCAAAAATCAACATTCG+AGG | + | chr6.3:10614037-10614056 | MS.gene83189:intron | 30.0% | |
| TAATCTTCCAAGGAAGAATT+TGG | - | chr6.3:10614760-10614779 | None:intergenic | 30.0% | |
| TAGCATTTCTCTATCATGTT+AGG | + | chr6.3:10614272-10614291 | MS.gene83189:intron | 30.0% | |
| TATCCTTAATCATTCCTTCT+TGG | - | chr6.3:10614959-10614978 | None:intergenic | 30.0% | |
| TCAACGAAATGCCAAAAAAT+GGG | - | chr6.3:10612409-10612428 | None:intergenic | 30.0% | |
| TCTAATACTCACTCTCTTAT+TGG | - | chr6.3:10614227-10614246 | None:intergenic | 30.0% | |
| TTTGTAGCTTCTGTAAATCA+CGG | - | chr6.3:10612825-10612844 | None:intergenic | 30.0% | |
| ! | TATTAATTTCGGGTCTGTTT+GGG | - | chr6.3:10614559-10614578 | None:intergenic | 30.0% |
| ! | TGTTATCTTTTGTATCTGTC+GGG | - | chr6.3:10614720-10614739 | None:intergenic | 30.0% |
| !! | CCCAAGTTGAATTTGTTAAA+CGG | + | chr6.3:10613828-10613847 | MS.gene83189:intron | 30.0% |
| !! | GCTTACCATAATTTGTGTTT+TGG | + | chr6.3:10612515-10612534 | MS.gene83189:CDS | 30.0% |
| AAAATTGAACCCACACAAAG+TGG | - | chr6.3:10614177-10614196 | None:intergenic | 35.0% | |
| AACACAATGGCATTGTAAGA+CGG | + | chr6.3:10613070-10613089 | MS.gene83189:intron | 35.0% | |
| AACATCAGAACAAGATTGCT+TGG | + | chr6.3:10612035-10612054 | MS.gene83189:CDS | 35.0% | |
| AACCAGTTAGGATAAAAGAG+AGG | - | chr6.3:10613737-10613756 | None:intergenic | 35.0% | |
| AAGGTACGAGTTCAATTAGT+CGG | + | chr6.3:10612971-10612990 | MS.gene83189:intron | 35.0% | |
| AATACAATACAGGAAGTTGG+AGG | + | chr6.3:10612207-10612226 | MS.gene83189:intron | 35.0% | |
| AATCACGGTCAAAATTGCAT+TGG | - | chr6.3:10612810-10612829 | None:intergenic | 35.0% | |
| AATCTTGTTCTGATGTTTGG+GGG | - | chr6.3:10612032-10612051 | None:intergenic | 35.0% | |
| ACAAAATAGTACCATTTGGC+AGG | - | chr6.3:10612333-10612352 | None:intergenic | 35.0% | |
| ACTCCAGTTATCTCAGATAA+AGG | - | chr6.3:10612243-10612262 | None:intergenic | 35.0% | |
| AGCAATCTTGTTCTGATGTT+TGG | - | chr6.3:10612035-10612054 | None:intergenic | 35.0% | |
| ATCACGGTCAAAATTGCATT+GGG | - | chr6.3:10612809-10612828 | None:intergenic | 35.0% | |
| ATGATTAGATGGAACCAGTT+AGG | - | chr6.3:10613749-10613768 | None:intergenic | 35.0% | |
| ATGCCAAGAAGGAATGATTA+AGG | + | chr6.3:10614953-10614972 | MS.gene83189:intron | 35.0% | |
| ATTCATTTCCTCTCTTGTGA+TGG | + | chr6.3:10614299-10614318 | MS.gene83189:intron | 35.0% | |
| ATTGATTGGAAACGACGTTA+TGG | + | chr6.3:10612285-10612304 | MS.gene83189:CDS | 35.0% | |
| CAATCTTGTTCTGATGTTTG+GGG | - | chr6.3:10612033-10612052 | None:intergenic | 35.0% | |
| CACAATACAATACAGGAAGT+TGG | + | chr6.3:10612204-10612223 | MS.gene83189:intron | 35.0% | |
| CTAAAAGAGATGCAAAAAGG+GGG | - | chr6.3:10613542-10613561 | None:intergenic | 35.0% | |
| CTGACCTAAATACTCAACAA+AGG | + | chr6.3:10613412-10613431 | MS.gene83189:intron | 35.0% | |
| CTTTGTTGAGTATTTAGGTC+AGG | - | chr6.3:10613414-10613433 | None:intergenic | 35.0% | |
| GCAATCTTGTTCTGATGTTT+GGG | - | chr6.3:10612034-10612053 | None:intergenic | 35.0% | |
| GCAGTAAGATACTAAAACCA+AGG | + | chr6.3:10613693-10613712 | MS.gene83189:intron | 35.0% | |
| GCTGTAAGGAACAAATTGAT+TGG | + | chr6.3:10612271-10612290 | MS.gene83189:CDS | 35.0% | |
| TGAAATTAATGTACACCCTC+CGG | + | chr6.3:10614005-10614024 | MS.gene83189:intron | 35.0% | |
| TGAGAAAAAGATGCTTGAAG+AGG | + | chr6.3:10613499-10613518 | MS.gene83189:CDS | 35.0% | |
| TGCCTTTGCCGTATTAATTT+CGG | - | chr6.3:10614570-10614589 | None:intergenic | 35.0% | |
| TGTATTGTCCATACCATGTT+TGG | + | chr6.3:10614594-10614613 | MS.gene83189:intron | 35.0% | |
| TTCATTTCCTCTCTTGTGAT+GGG | + | chr6.3:10614300-10614319 | MS.gene83189:intron | 35.0% | |
| TTGATCTTGATACCAGCATT+AGG | - | chr6.3:10612064-10612083 | None:intergenic | 35.0% | |
| ! | AGACCTTTATCTGAGATAAC+TGG | + | chr6.3:10612237-10612256 | MS.gene83189:CDS | 35.0% |
| ! | AGTGCGTGAAAAGTGATTTT+GGG | + | chr6.3:10613002-10613021 | MS.gene83189:intron | 35.0% |
| ! | GTATTAATTTCGGGTCTGTT+TGG | - | chr6.3:10614560-10614579 | None:intergenic | 35.0% |
| ! | GTTATCTTTTGTATCTGTCG+GGG | - | chr6.3:10614719-10614738 | None:intergenic | 35.0% |
| !! | AATACTGGTATTTTTGCTGC+AGG | + | chr6.3:10613626-10613645 | MS.gene83189:intron | 35.0% |
| !! | CTTTTTGGCATAATCTTCCA+AGG | - | chr6.3:10614770-10614789 | None:intergenic | 35.0% |
| !! | GGAGTTTGTGAGTTTTGTAA+TGG | + | chr6.3:10612695-10612714 | MS.gene83189:intron | 35.0% |
| !!! | ATGGATTTTTAGTAGTGTGG+AGG | + | chr6.3:10612933-10612952 | MS.gene83189:intron | 35.0% |
| ACAAGACAGTATGCCAAACA+TGG | - | chr6.3:10614610-10614629 | None:intergenic | 40.0% | |
| ACAGTATGCCAAACATGGTA+TGG | - | chr6.3:10614605-10614624 | None:intergenic | 40.0% | |
| ACCCGAAATTAATACGGCAA+AGG | + | chr6.3:10614565-10614584 | MS.gene83189:intron | 40.0% | |
| AGGGTACGAGTTCAATTAGT+TGG | + | chr6.3:10612674-10612693 | MS.gene83189:intron | 40.0% | |
| AGTATCTTACTGCACGCAAT+AGG | - | chr6.3:10613686-10613705 | None:intergenic | 40.0% | |
| ATCTTGTTCTGATGTTTGGG+GGG | - | chr6.3:10612031-10612050 | None:intergenic | 40.0% | |
| ATTGCTTGGAAACCTAATGC+TGG | + | chr6.3:10612049-10612068 | MS.gene83189:CDS | 40.0% | |
| CCAAAAAGAATGGAGTTGTC+GGG | + | chr6.3:10614782-10614801 | MS.gene83189:CDS | 40.0% | |
| GAACACGTGTTTGTGAAAAG+TGG | + | chr6.3:10612717-10612736 | MS.gene83189:intron | 40.0% | |
| GCCAAAAAGAATGGAGTTGT+CGG | + | chr6.3:10614781-10614800 | MS.gene83189:CDS | 40.0% | |
| GCCTTTGCCGTATTAATTTC+GGG | - | chr6.3:10614569-10614588 | None:intergenic | 40.0% | |
| GTATCTTACTGCACGCAATA+GGG | - | chr6.3:10613685-10613704 | None:intergenic | 40.0% | |
| GTCAAAATTGCATTGGGAAG+CGG | - | chr6.3:10612803-10612822 | None:intergenic | 40.0% | |
| GTGGAGGTGGAAATAAAACA+GGG | + | chr6.3:10612655-10612674 | MS.gene83189:intron | 40.0% | |
| TATGTTCCACCACTTTGTGT+GGG | + | chr6.3:10614165-10614184 | MS.gene83189:intron | 40.0% | |
| TGATGAAGTGAATGCCAAGA+AGG | + | chr6.3:10614942-10614961 | MS.gene83189:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr6.3:10614023-10614042 | None:intergenic | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr6.3:10614140-10614159 | MS.gene83189:intron | 40.0% | |
| TGTGGAGGTGGAAATAAAAC+AGG | + | chr6.3:10612654-10612673 | MS.gene83189:intron | 40.0% | |
| TTCTTGGCATTCACTTCATC+AGG | - | chr6.3:10614943-10614962 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr6.3:10614024-10614043 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr6.3:10614139-10614158 | MS.gene83189:intron | 40.0% | |
| ! | AGCCTCTCTTTTATCCTAAC+TGG | + | chr6.3:10613732-10613751 | MS.gene83189:intron | 40.0% |
| ! | CAATTTGTTCCTTACAGCGA+GGG | - | chr6.3:10612269-10612288 | None:intergenic | 40.0% |
| ! | GAGTGCGTGAAAAGTGATTT+TGG | + | chr6.3:10613001-10613020 | MS.gene83189:intron | 40.0% |
| ! | TCAATTTGTTCCTTACAGCG+AGG | - | chr6.3:10612270-10612289 | None:intergenic | 40.0% |
| ! | TGATGACGATGATGAAAGTG+AGG | + | chr6.3:10614843-10614862 | MS.gene83189:intron | 40.0% |
| !! | AAGTTGGATTTTTGGGAGTG+TGG | + | chr6.3:10612636-10612655 | MS.gene83189:intron | 40.0% |
| !! | AGGCTGTTTGTTTTCACGAT+GGG | - | chr6.3:10612884-10612903 | None:intergenic | 40.0% |
| !! | TAGGCTGTTTGTTTTCACGA+TGG | - | chr6.3:10612885-10612904 | None:intergenic | 40.0% |
| !!! | GGGTTGTCCTTTTTGTTGTT+TGG | + | chr6.3:10612451-10612470 | MS.gene83189:intron | 40.0% |
| AAAGAGATGCAAAAAGGGGG+TGG | - | chr6.3:10613539-10613558 | None:intergenic | 45.0% | |
| AAGAGATGCAAAAAGGGGGT+GGG | - | chr6.3:10613538-10613557 | None:intergenic | 45.0% | |
| ATTGAACCCACACAAAGTGG+TGG | - | chr6.3:10614174-10614193 | None:intergenic | 45.0% | |
| CATTTGGCAGGTTCATGAAG+AGG | - | chr6.3:10612321-10612340 | None:intergenic | 45.0% | |
| CTCTTCATGAACCTGCCAAA+TGG | + | chr6.3:10612319-10612338 | MS.gene83189:CDS | 45.0% | |
| GTATGTTCCACCACTTTGTG+TGG | + | chr6.3:10614164-10614183 | MS.gene83189:intron | 45.0% | |
| GTGTGAAACTCGCATCTAAG+TGG | - | chr6.3:10612857-10612876 | None:intergenic | 45.0% | |
| TAGGGACGTTTCAGAAGTTG+AGG | + | chr6.3:10613475-10613494 | MS.gene83189:intron | 45.0% | |
| TCTCTCGCTAGCGTTCTTAA+TGG | - | chr6.3:10613652-10613671 | None:intergenic | 45.0% | |
| TGACGATGATGAAAGTGAGG+AGG | + | chr6.3:10614846-10614865 | MS.gene83189:intron | 45.0% | |
| TGTTTGTGTAGGTTGTGCGA+AGG | + | chr6.3:10613219-10613238 | MS.gene83189:intron | 45.0% | |
| TTCCAACTATACGCTCCACA+CGG | - | chr6.3:10613273-10613292 | None:intergenic | 45.0% | |
| ! | CCCGACAACTCCATTCTTTT+TGG | - | chr6.3:10614785-10614804 | None:intergenic | 45.0% |
| ! | TGATGCGCACGTAACTCTTT+TGG | + | chr6.3:10613892-10613911 | MS.gene83189:intron | 45.0% |
| ! | TGCGAATGAAGAGTGTGATG+AGG | + | chr6.3:10614900-10614919 | MS.gene83189:intron | 45.0% |
| !! | ATGAGTACCGGCAAGAAAAC+TGG | + | chr6.3:10612004-10612023 | MS.gene83189:CDS | 45.0% |
| !! | TTGGATTTTTGGGAGTGTGG+AGG | + | chr6.3:10612639-10612658 | MS.gene83189:intron | 45.0% |
| !! | ATTTAATATTAAAAGAAAAA+AGG | - | chr6.3:10612127-10612146 | None:intergenic | 5.0% |
| !! | TTTAATATTAAAAGAAAAAA+GGG | - | chr6.3:10612126-10612145 | None:intergenic | 5.0% |
| CCTTAGTCCCATCACAAGAG+AGG | - | chr6.3:10614310-10614329 | None:intergenic | 50.0% | |
| GTGTGGAGCGTATAGTTGGA+AGG | + | chr6.3:10613272-10613291 | MS.gene83189:CDS | 50.0% | |
| TGGAGCGTATAGTTGGAAGG+TGG | + | chr6.3:10613275-10613294 | MS.gene83189:intron | 50.0% | |
| ! | CCTCTCTTGTGATGGGACTA+AGG | + | chr6.3:10614307-10614326 | MS.gene83189:intron | 50.0% |
| ! | GATGGGACTAAGGTCCCTTT+TGG | + | chr6.3:10614317-10614336 | MS.gene83189:intron | 50.0% |
| !! | GATTTTTGGGAGTGTGGAGG+TGG | + | chr6.3:10612642-10612661 | MS.gene83189:intron | 50.0% |
| TGCCGTGTGGAGCGTATAGT+TGG | + | chr6.3:10613268-10613287 | MS.gene83189:CDS | 55.0% | |
| ! | CGGGGTGTCTGTTGAACTCT+TGG | - | chr6.3:10614701-10614720 | None:intergenic | 55.0% |
| ! | GTGGTGGAACATACACCCTC+CGG | - | chr6.3:10614158-10614177 | None:intergenic | 55.0% |
| !! | CGCAAAGTGTTGTTGCCGTG+TGG | + | chr6.3:10613255-10613274 | MS.gene83189:CDS | 55.0% |
| TGGAGTGTGCCCTCGCTGTA+AGG | + | chr6.3:10612257-10612276 | MS.gene83189:CDS | 60.0% | |
| ! | GGGGGGACCAGTTTTCTTGC+CGG | - | chr6.3:10612014-10612033 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 10612004 | 10615014 | 10612004 | ID=MS.gene83189 |
| chr6.3 | mRNA | 10612004 | 10615014 | 10612004 | ID=MS.gene83189.t1;Parent=MS.gene83189 |
| chr6.3 | exon | 10612004 | 10612090 | 10612004 | ID=MS.gene83189.t1.exon1;Parent=MS.gene83189.t1 |
| chr6.3 | CDS | 10612004 | 10612090 | 10612004 | ID=cds.MS.gene83189.t1;Parent=MS.gene83189.t1 |
| chr6.3 | exon | 10612219 | 10612340 | 10612219 | ID=MS.gene83189.t1.exon2;Parent=MS.gene83189.t1 |
| chr6.3 | CDS | 10612219 | 10612340 | 10612219 | ID=cds.MS.gene83189.t1;Parent=MS.gene83189.t1 |
| chr6.3 | exon | 10612484 | 10612536 | 10612484 | ID=MS.gene83189.t1.exon3;Parent=MS.gene83189.t1 |
| chr6.3 | CDS | 10612484 | 10612536 | 10612484 | ID=cds.MS.gene83189.t1;Parent=MS.gene83189.t1 |
| chr6.3 | exon | 10613230 | 10613293 | 10613230 | ID=MS.gene83189.t1.exon4;Parent=MS.gene83189.t1 |
| chr6.3 | CDS | 10613230 | 10613293 | 10613230 | ID=cds.MS.gene83189.t1;Parent=MS.gene83189.t1 |
| chr6.3 | exon | 10613478 | 10613520 | 10613478 | ID=MS.gene83189.t1.exon5;Parent=MS.gene83189.t1 |
| chr6.3 | CDS | 10613478 | 10613520 | 10613478 | ID=cds.MS.gene83189.t1;Parent=MS.gene83189.t1 |
| chr6.3 | exon | 10613648 | 10613695 | 10613648 | ID=MS.gene83189.t1.exon6;Parent=MS.gene83189.t1 |
| chr6.3 | CDS | 10613648 | 10613695 | 10613648 | ID=cds.MS.gene83189.t1;Parent=MS.gene83189.t1 |
| chr6.3 | exon | 10614679 | 10614832 | 10614679 | ID=MS.gene83189.t1.exon7;Parent=MS.gene83189.t1 |
| chr6.3 | CDS | 10614679 | 10614832 | 10614679 | ID=cds.MS.gene83189.t1;Parent=MS.gene83189.t1 |
| chr6.3 | exon | 10615001 | 10615014 | 10615001 | ID=MS.gene83189.t1.exon8;Parent=MS.gene83189.t1 |
| chr6.3 | CDS | 10615001 | 10615014 | 10615001 | ID=cds.MS.gene83189.t1;Parent=MS.gene83189.t1 |
| Gene Sequence |
| Protein sequence |
