Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83245.t1 | XP_013443380.1 | 97.8 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 5.70E-148 | 533.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83245.t1 | P57758 | 69.5 | 269 | 78 | 2 | 1 | 269 | 1 | 265 | 1.7e-103 | 377.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83245.t1 | A0A072TV48 | 97.8 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 4.1e-148 | 533.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050752 | MS.gene83245 | 0.813154 | 2.95E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene83245 | 0.806905 | 6.56E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene83245 | 0.812848 | 3.45E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83245.t1 | MTR_0018s0310 | 97.778 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 0.0 | 545 |
| MS.gene83245.t1 | MTR_0018s0320 | 71.119 | 277 | 73 | 2 | 1 | 270 | 1 | 277 | 3.38e-147 | 413 |
| MS.gene83245.t1 | MTR_6g022190 | 61.710 | 269 | 98 | 1 | 1 | 269 | 1 | 264 | 1.75e-124 | 355 |
| MS.gene83245.t1 | MTR_6g022180 | 60.507 | 276 | 102 | 2 | 2 | 270 | 4 | 279 | 1.93e-117 | 338 |
| MS.gene83245.t1 | MTR_6g022210 | 58.484 | 277 | 107 | 2 | 1 | 270 | 1 | 276 | 7.43e-115 | 331 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83245.t1 | AT5G40670 | 69.517 | 269 | 78 | 2 | 1 | 269 | 1 | 265 | 4.92e-137 | 387 |
Find 34 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTCACAAACCTCTTTC+TGG | 0.134131 | 7.3:-61543252 | None:intergenic |
| CATGTCTCTTATGAAGCTTT+AGG | 0.224216 | 7.3:+61542938 | MS.gene83245:CDS |
| GGTTCTTGGGTGAACTTCTA+TGG | 0.256402 | 7.3:+61546249 | MS.gene83245:intron |
| ATGTCTCTTATGAAGCTTTA+GGG | 0.295292 | 7.3:+61542939 | MS.gene83245:CDS |
| TAACATCATAGATTGCAATT+TGG | 0.357252 | 7.3:-61545167 | None:intergenic |
| GTACTGATGGATGGAGCATT+TGG | 0.371191 | 7.3:+61546067 | MS.gene83245:CDS |
| AGAAATCGATCATGTCTTCT+TGG | 0.379460 | 7.3:+61542900 | None:intergenic |
| TTGCATTGCACAATCATCAT+TGG | 0.400882 | 7.3:+61545366 | MS.gene83245:CDS |
| TCTTAAACTTTCGCAGGAAA+AGG | 0.446843 | 7.3:+61543008 | MS.gene83245:CDS |
| TTGTGTTTGATTAGTGTGGT+TGG | 0.463223 | 7.3:+61543115 | MS.gene83245:intron |
| GAGCATTTGGAACATTCTAC+TGG | 0.464204 | 7.3:+61546080 | MS.gene83245:CDS |
| ATATTAGTGACCTTGATCAA+TGG | 0.482678 | 7.3:-61546148 | None:intergenic |
| GACTTGACATTATCAAAGTC+AGG | 0.487582 | 7.3:-61546499 | None:intergenic |
| GTGAACTTCTATGGAAACAT+AGG | 0.490156 | 7.3:+61546258 | MS.gene83245:CDS |
| GGTAGCAAACTATGCACAAA+TGG | 0.504062 | 7.3:+61546116 | MS.gene83245:CDS |
| GGTCGTAAAATATATTCCTC+AGG | 0.510399 | 7.3:+61545543 | MS.gene83245:CDS |
| AAGTGATCTTAAACTTTCGC+AGG | 0.514012 | 7.3:+61543002 | MS.gene83245:CDS |
| TGCACAATCATCATTGGCTA+TGG | 0.522187 | 7.3:+61545372 | MS.gene83245:CDS |
| AGGGAAACTATTGCTATCCT+TGG | 0.525698 | 7.3:+61546278 | MS.gene83245:CDS |
| GCAACATCATTTGCTGCCAC+TGG | 0.537971 | 7.3:-61545102 | None:intergenic |
| CAACAATATAGAGATAAATA+CGG | 0.539767 | 7.3:+61543229 | MS.gene83245:CDS |
| CAGGATATAACACATAATGT+TGG | 0.552953 | 7.3:-61546450 | None:intergenic |
| TGAACTTCTATGGAAACATA+GGG | 0.561333 | 7.3:+61546259 | MS.gene83245:CDS |
| GCTATGCAATCCATTGATCA+AGG | 0.566651 | 7.3:+61546138 | MS.gene83245:CDS |
| AGATAAATACGGCCAGAAAG+AGG | 0.569324 | 7.3:+61543240 | MS.gene83245:CDS |
| GCTTCATAAGAGACATGAAG+TGG | 0.576703 | 7.3:-61542932 | None:intergenic |
| TATCATTCAAGTTTCTATGA+CGG | 0.577201 | 7.3:+61545522 | MS.gene83245:CDS |
| CATAATGTTGGATGATGAAG+AGG | 0.579723 | 7.3:-61546438 | None:intergenic |
| CAAGTCTTCTGATCAGACAT+TGG | 0.583223 | 7.3:+61546516 | MS.gene83245:CDS |
| CGAAAGTTTAAGATCACTTG+AGG | 0.587893 | 7.3:-61542998 | None:intergenic |
| TCTCTTATGAAGCTTTAGGG+TGG | 0.598428 | 7.3:+61542942 | MS.gene83245:CDS |
| AAAGTATCTAAAATTGCTTG+TGG | 0.608644 | 7.3:+61545299 | MS.gene83245:CDS |
| GTGGAATAGTCACTGTTGCA+TGG | 0.616465 | 7.3:+61545318 | MS.gene83245:CDS |
| CTGCTGTTAGTAGTACTGCA+TGG | 0.630929 | 7.3:-61545134 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAATTAAGCTAAA+TGG | - | chr7.3:61545209-61545228 | None:intergenic | 10.0% |
| !! | AATAAATATATTGAATTGAA+TGG | - | chr7.3:61543285-61543304 | None:intergenic | 10.0% |
| !! | TAAAAAAAAACATAAAAAAG+AGG | - | chr7.3:61544781-61544800 | None:intergenic | 10.0% |
| !! | TAATAATATCATAAAAACAA+TGG | - | chr7.3:61543063-61543082 | None:intergenic | 10.0% |
| !!! | TTATCATTTTAAAATTTTTG+AGG | + | chr7.3:61543993-61544012 | MS.gene83245:intron | 10.0% |
| !! | AAAAAATATGAATTTATTGG+TGG | + | chr7.3:61544555-61544574 | MS.gene83245:intron | 15.0% |
| !! | AAAAACATTAAACTATCATA+TGG | + | chr7.3:61543629-61543648 | MS.gene83245:intron | 15.0% |
| !! | CAATTTAACATGAATAATAA+AGG | - | chr7.3:61543310-61543329 | None:intergenic | 15.0% |
| !! | GCAAAAAAATATGAATTTAT+TGG | + | chr7.3:61544552-61544571 | MS.gene83245:intron | 15.0% |
| !! | TAAAAGTCAAAAAGAAAAAA+AGG | + | chr7.3:61544037-61544056 | MS.gene83245:intron | 15.0% |
| !! | TAATTGTTAAAAATTTCAAG+TGG | + | chr7.3:61544340-61544359 | MS.gene83245:intron | 15.0% |
| !! | TATCAAAAAGATAGTTAAAT+AGG | - | chr7.3:61544163-61544182 | None:intergenic | 15.0% |
| !! | TTAAACATGAACAAAAATAA+GGG | - | chr7.3:61545036-61545055 | None:intergenic | 15.0% |
| !! | TTATATTATATGAATGAACT+CGG | + | chr7.3:61543557-61543576 | MS.gene83245:intron | 15.0% |
| !! | TTTAAACATGAACAAAAATA+AGG | - | chr7.3:61545037-61545056 | None:intergenic | 15.0% |
| !!! | TTGTTTCTTATAAATAAGAT+CGG | + | chr7.3:61543903-61543922 | MS.gene83245:intron | 15.0% |
| !!! | TTTTATTTTTTTGAACATTC+AGG | - | chr7.3:61544407-61544426 | None:intergenic | 15.0% |
| !! | ACATAAGAGTAATTTACAAA+TGG | - | chr7.3:61544197-61544216 | None:intergenic | 20.0% |
| !! | ATAATTAAGCTAAATGGTAA+AGG | - | chr7.3:61545203-61545222 | None:intergenic | 20.0% |
| !! | ATATCATAAAAACAATGGTA+AGG | - | chr7.3:61543058-61543077 | None:intergenic | 20.0% |
| !! | CAACAATATAGAGATAAATA+CGG | + | chr7.3:61543229-61543248 | MS.gene83245:CDS | 20.0% |
| !! | GGATTAAAATAAGGTATAAT+AGG | + | chr7.3:61544576-61544595 | MS.gene83245:intron | 20.0% |
| !! | TAAACATGAACAAAAATAAG+GGG | - | chr7.3:61545035-61545054 | None:intergenic | 20.0% |
| !!! | CAAAATTTTGTTACAAACAA+TGG | + | chr7.3:61544290-61544309 | MS.gene83245:intron | 20.0% |
| !!! | CCTTTTTAAATGTCTTTTTA+GGG | + | chr7.3:61544125-61544144 | MS.gene83245:intron | 20.0% |
| !!! | CTTTTTAAATGTCTTTTTAG+GGG | + | chr7.3:61544126-61544145 | MS.gene83245:intron | 20.0% |
| !!! | TCCTTTTTAAATGTCTTTTT+AGG | + | chr7.3:61544124-61544143 | MS.gene83245:intron | 20.0% |
| !!! | TGTATCCAAAAAGTAATTTT+AGG | - | chr7.3:61543811-61543830 | None:intergenic | 20.0% |
| !!! | TTTATTGGTGGATTAAAATA+AGG | + | chr7.3:61544567-61544586 | MS.gene83245:intron | 20.0% |
| !!! | TTTTGAATTTTGATGCATTA+TGG | + | chr7.3:61545441-61545460 | MS.gene83245:intron | 20.0% |
| ! | AATAAGAAAATGACGTGTTA+CGG | + | chr7.3:61543690-61543709 | MS.gene83245:intron | 25.0% |
| ! | AATTATGTTGTGAAAATAGG+CGG | + | chr7.3:61546023-61546042 | MS.gene83245:intron | 25.0% |
| ! | ACCAATTATGTTGTGAAAAT+AGG | + | chr7.3:61546020-61546039 | MS.gene83245:intron | 25.0% |
| ! | ACTTATCTATTAACTCTTCT+TGG | - | chr7.3:61544318-61544337 | None:intergenic | 25.0% |
| ! | AGAGTAAATTTAATAGTGTG+AGG | + | chr7.3:61544092-61544111 | MS.gene83245:intron | 25.0% |
| ! | CCCTAAAAAGACATTTAAAA+AGG | - | chr7.3:61544128-61544147 | None:intergenic | 25.0% |
| ! | GTTTGATGGGATTAATTAAA+AGG | + | chr7.3:61543739-61543758 | MS.gene83245:intron | 25.0% |
| ! | TAACATCATAGATTGCAATT+TGG | - | chr7.3:61545170-61545189 | None:intergenic | 25.0% |
| !! | AAAGTATCTAAAATTGCTTG+TGG | + | chr7.3:61545299-61545318 | MS.gene83245:CDS | 25.0% |
| !! | AAGCAATTTTAGATACTTTC+TGG | - | chr7.3:61545298-61545317 | None:intergenic | 25.0% |
| !! | AGTCTTTAGTTCATGTTAAA+GGG | + | chr7.3:61544682-61544701 | MS.gene83245:intron | 25.0% |
| !! | TAGTCTTTAGTTCATGTTAA+AGG | + | chr7.3:61544681-61544700 | MS.gene83245:intron | 25.0% |
| !! | TATCATTCAAGTTTCTATGA+CGG | + | chr7.3:61545522-61545541 | MS.gene83245:CDS | 25.0% |
| !! | TTTTGATGCATTATGGTTTA+TGG | + | chr7.3:61545448-61545467 | MS.gene83245:intron | 25.0% |
| !! | TTTTGTATACACTCGTAATT+TGG | + | chr7.3:61543368-61543387 | MS.gene83245:intron | 25.0% |
| !!! | AAAAGTAATTTTAGGATCTC+AGG | - | chr7.3:61543803-61543822 | None:intergenic | 25.0% |
| !!! | AAAGACAATTGTTTGTTATG+AGG | + | chr7.3:61544424-61544443 | MS.gene83245:intron | 25.0% |
| !!! | AAAGTAATTTTAGGATCTCA+GGG | - | chr7.3:61543802-61543821 | None:intergenic | 25.0% |
| !!! | AAATTCCATCTTTGTTTTTC+AGG | + | chr7.3:61546228-61546247 | MS.gene83245:intron | 25.0% |
| !!! | AAGACAATTGTTTGTTATGA+GGG | + | chr7.3:61544425-61544444 | MS.gene83245:intron | 25.0% |
| !!! | GAGATCCTAAAATTACTTTT+TGG | + | chr7.3:61543803-61543822 | MS.gene83245:intron | 25.0% |
| !!! | TTTGTTGGTCAATTAGTTTT+TGG | + | chr7.3:61542975-61542994 | MS.gene83245:CDS | 25.0% |
| !!! | TTTTTTTAAAGTGTCCCAAT+AGG | + | chr7.3:61544793-61544812 | MS.gene83245:intron | 25.0% |
| AAAATTCACAAACCTCTTTC+TGG | - | chr7.3:61543255-61543274 | None:intergenic | 30.0% | |
| AAGAACCTGAAAAACAAAGA+TGG | - | chr7.3:61546236-61546255 | None:intergenic | 30.0% | |
| ACATAATTGGTTAAGATGGA+TGG | - | chr7.3:61546011-61546030 | None:intergenic | 30.0% | |
| ATATTAGTGACCTTGATCAA+TGG | - | chr7.3:61546151-61546170 | None:intergenic | 30.0% | |
| ATCACATTCTTTAACATTGC+AGG | + | chr7.3:61546396-61546415 | MS.gene83245:intron | 30.0% | |
| ATGACTTGAGGTCTTAAAAT+TGG | - | chr7.3:61544749-61544768 | None:intergenic | 30.0% | |
| ATGTCTCTTATGAAGCTTTA+GGG | + | chr7.3:61542939-61542958 | MS.gene83245:CDS | 30.0% | |
| CACAACATAATTGGTTAAGA+TGG | - | chr7.3:61546015-61546034 | None:intergenic | 30.0% | |
| CAGGATATAACACATAATGT+TGG | - | chr7.3:61546453-61546472 | None:intergenic | 30.0% | |
| GCTAACTTCAGAACAAAAAA+TGG | - | chr7.3:61545989-61546008 | None:intergenic | 30.0% | |
| GTAAATTTAATAGTGTGAGG+AGG | + | chr7.3:61544095-61544114 | MS.gene83245:intron | 30.0% | |
| GTTAAACATGTCATTAGCTA+TGG | + | chr7.3:61544985-61545004 | MS.gene83245:intron | 30.0% | |
| TCACAGTAACAAACAATTGT+CGG | - | chr7.3:61544499-61544518 | None:intergenic | 30.0% | |
| TCTCAATTCTCAAACAATGT+AGG | + | chr7.3:61544856-61544875 | MS.gene83245:intron | 30.0% | |
| TGAACTTCTATGGAAACATA+GGG | + | chr7.3:61546259-61546278 | MS.gene83245:CDS | 30.0% | |
| TGATGATAAGCTACGAAATA+CGG | - | chr7.3:61545787-61545806 | None:intergenic | 30.0% | |
| TTAAAATCGATACTAACCTG+AGG | - | chr7.3:61545562-61545581 | None:intergenic | 30.0% | |
| ! | CAAACAATGTAGGACTTTTT+AGG | + | chr7.3:61544866-61544885 | MS.gene83245:intron | 30.0% |
| ! | GCACAAACACTTGTTAAATT+AGG | + | chr7.3:61543404-61543423 | MS.gene83245:intron | 30.0% |
| ! | GCCTATTTTCACAACATAAT+TGG | - | chr7.3:61546024-61546043 | None:intergenic | 30.0% |
| ! | GTTTTTGTGTTTGATTAGTG+TGG | + | chr7.3:61543111-61543130 | MS.gene83245:intron | 30.0% |
| !! | TCAATTTCTGAAATGCATGA+TGG | - | chr7.3:61545012-61545031 | None:intergenic | 30.0% |
| !! | TCTAATTTGCGTTTTCTTTC+AGG | - | chr7.3:61546472-61546491 | None:intergenic | 30.0% |
| !! | TTCATGAGAAAAAGTACTGA+TGG | + | chr7.3:61546054-61546073 | MS.gene83245:CDS | 30.0% |
| !!! | AATGGTAAGGTATTGTTTTC+TGG | - | chr7.3:61543045-61543064 | None:intergenic | 30.0% |
| !!! | AGACTTTTTTGTTGTATCTG+AGG | + | chr7.3:61544658-61544677 | MS.gene83245:intron | 30.0% |
| !!! | ATCTTTGTTTTTCAGGTTCT+TGG | + | chr7.3:61546235-61546254 | MS.gene83245:intron | 30.0% |
| !!! | TCTTTGTTTTTCAGGTTCTT+GGG | + | chr7.3:61546236-61546255 | MS.gene83245:intron | 30.0% |
| AAGTGATCTTAAACTTTCGC+AGG | + | chr7.3:61543002-61543021 | MS.gene83245:CDS | 35.0% | |
| AGGTCTTTGAATATGACTTG+AGG | - | chr7.3:61544761-61544780 | None:intergenic | 35.0% | |
| AGTTCATGTTAAAGGGCTAA+AGG | + | chr7.3:61544689-61544708 | MS.gene83245:intron | 35.0% | |
| ATCCAACAATGATACATGTC+AGG | - | chr7.3:61545655-61545674 | None:intergenic | 35.0% | |
| CATAATGTTGGATGATGAAG+AGG | - | chr7.3:61546441-61546460 | None:intergenic | 35.0% | |
| CATGTCTCTTATGAAGCTTT+AGG | + | chr7.3:61542938-61542957 | MS.gene83245:CDS | 35.0% | |
| GACTTGACATTATCAAAGTC+AGG | - | chr7.3:61546502-61546521 | None:intergenic | 35.0% | |
| GGTCGTAAAATATATTCCTC+AGG | + | chr7.3:61545543-61545562 | MS.gene83245:CDS | 35.0% | |
| GTAATAAGTAGGCGTTTGAT+GGG | + | chr7.3:61543726-61543745 | MS.gene83245:intron | 35.0% | |
| GTGAACTTCTATGGAAACAT+AGG | + | chr7.3:61546258-61546277 | MS.gene83245:CDS | 35.0% | |
| TAATGAGTTCGACAAAATCG+TGG | - | chr7.3:61545929-61545948 | None:intergenic | 35.0% | |
| TATATGAATGAACTCGGATC+TGG | + | chr7.3:61543563-61543582 | MS.gene83245:intron | 35.0% | |
| TCTTAAACTTTCGCAGGAAA+AGG | + | chr7.3:61543008-61543027 | MS.gene83245:CDS | 35.0% | |
| TGATACACTGTTACATACCA+AGG | - | chr7.3:61546298-61546317 | None:intergenic | 35.0% | |
| TTGCATTGCACAATCATCAT+TGG | + | chr7.3:61545366-61545385 | MS.gene83245:CDS | 35.0% | |
| TTGTGTTTGATTAGTGTGGT+TGG | + | chr7.3:61543115-61543134 | MS.gene83245:intron | 35.0% | |
| ! | AACATTCTACTGGACTTTTC+TGG | + | chr7.3:61546090-61546109 | MS.gene83245:CDS | 35.0% |
| ! | CGAAAGTTTAAGATCACTTG+AGG | - | chr7.3:61543001-61543020 | None:intergenic | 35.0% |
| ! | GACAATTGTTTGTTACTGTG+AGG | + | chr7.3:61544498-61544517 | MS.gene83245:intron | 35.0% |
| ! | GACTTTTGTGAAAGTGGAAA+TGG | - | chr7.3:61543655-61543674 | None:intergenic | 35.0% |
| !! | TGAGAAAAAGTACTGATGGA+TGG | + | chr7.3:61546058-61546077 | MS.gene83245:CDS | 35.0% |
| !!! | ATTTTAGGATCTCAGGGATA+AGG | - | chr7.3:61543796-61543815 | None:intergenic | 35.0% |
| !!! | GGTTTATGGAAGCTTTGTTT+TGG | + | chr7.3:61545462-61545481 | MS.gene83245:intron | 35.0% |
| !!! | TCGATTATTTTTATGCAGCG+TGG | + | chr7.3:61545269-61545288 | MS.gene83245:intron | 35.0% |
| AGATAAATACGGCCAGAAAG+AGG | + | chr7.3:61543240-61543259 | MS.gene83245:CDS | 40.0% | |
| AGGGAAACTATTGCTATCCT+TGG | + | chr7.3:61546278-61546297 | MS.gene83245:CDS | 40.0% | |
| CAAGTCTTCTGATCAGACAT+TGG | + | chr7.3:61546516-61546535 | MS.gene83245:CDS | 40.0% | |
| CGTAATAAGTAGGCGTTTGA+TGG | + | chr7.3:61543725-61543744 | MS.gene83245:intron | 40.0% | |
| GAAAATGACGTGTTACGGTT+AGG | + | chr7.3:61543695-61543714 | MS.gene83245:intron | 40.0% | |
| GAGCGCACGCAAAAAAAAAA+GGG | + | chr7.3:61544447-61544466 | MS.gene83245:intron | 40.0% | |
| GCTATGCAATCCATTGATCA+AGG | + | chr7.3:61546138-61546157 | MS.gene83245:CDS | 40.0% | |
| GCTTCATAAGAGACATGAAG+TGG | - | chr7.3:61542935-61542954 | None:intergenic | 40.0% | |
| GGTAGCAAACTATGCACAAA+TGG | + | chr7.3:61546116-61546135 | MS.gene83245:CDS | 40.0% | |
| GTGCTTATCGAAAAGATGTG+CGG | + | chr7.3:61543589-61543608 | MS.gene83245:intron | 40.0% | |
| TAATTACAAGTGCCCGACAT+CGG | - | chr7.3:61543436-61543455 | None:intergenic | 40.0% | |
| TGCCTGACATGTATCATTGT+TGG | + | chr7.3:61545650-61545669 | MS.gene83245:intron | 40.0% | |
| TGCTATGTGAAGCACATGTA+CGG | - | chr7.3:61543534-61543553 | None:intergenic | 40.0% | |
| TTGCACTTTCTCGACCTATT+GGG | - | chr7.3:61544810-61544829 | None:intergenic | 40.0% | |
| ! | AGGAAGGAAGCGTAATAAGT+AGG | + | chr7.3:61543715-61543734 | MS.gene83245:intron | 40.0% |
| ! | ATTCTACTGGACTTTTCTGG+AGG | + | chr7.3:61546093-61546112 | MS.gene83245:CDS | 40.0% |
| ! | GAGCATTTGGAACATTCTAC+TGG | + | chr7.3:61546080-61546099 | MS.gene83245:CDS | 40.0% |
| ! | TCTTTTGCAGATGATACCAG+TGG | + | chr7.3:61545086-61545105 | MS.gene83245:intron | 40.0% |
| ! | TGCACAATCATCATTGGCTA+TGG | + | chr7.3:61545372-61545391 | MS.gene83245:CDS | 40.0% |
| ! | TTCTACTGGACTTTTCTGGA+GGG | + | chr7.3:61546094-61546113 | MS.gene83245:CDS | 40.0% |
| !! | TCTCTTATGAAGCTTTAGGG+TGG | + | chr7.3:61542942-61542961 | MS.gene83245:CDS | 40.0% |
| !!! | CTCGTTGACTTTTGTGAAAG+TGG | - | chr7.3:61543661-61543680 | None:intergenic | 40.0% |
| !!! | GGTGGTTTGCTTTTGTTTGT+TGG | + | chr7.3:61542960-61542979 | MS.gene83245:CDS | 40.0% |
| AAAGGAACTTGTGTGTGGCT+TGG | + | chr7.3:61544707-61544726 | MS.gene83245:intron | 45.0% | |
| AATTAGGCGTGTTCCGATGT+CGG | + | chr7.3:61543420-61543439 | MS.gene83245:intron | 45.0% | |
| ATCAGTGTTCGTATCGTGTC+CGG | + | chr7.3:61543499-61543518 | MS.gene83245:intron | 45.0% | |
| ATGACGTGTTACGGTTAGGA+AGG | + | chr7.3:61543699-61543718 | MS.gene83245:intron | 45.0% | |
| CTGCTGTTAGTAGTACTGCA+TGG | - | chr7.3:61545137-61545156 | None:intergenic | 45.0% | |
| CTTGCACTTTCTCGACCTAT+TGG | - | chr7.3:61544811-61544830 | None:intergenic | 45.0% | |
| GGAGCGCACGCAAAAAAAAA+AGG | + | chr7.3:61544446-61544465 | MS.gene83245:intron | 45.0% | |
| GGTTCTTGGGTGAACTTCTA+TGG | + | chr7.3:61546249-61546268 | MS.gene83245:intron | 45.0% | |
| GTGGAATAGTCACTGTTGCA+TGG | + | chr7.3:61545318-61545337 | MS.gene83245:CDS | 45.0% | |
| TGAGTTCGACAAAATCGTGG+TGG | - | chr7.3:61545926-61545945 | None:intergenic | 45.0% | |
| ! | GTACTGATGGATGGAGCATT+TGG | + | chr7.3:61546067-61546086 | MS.gene83245:CDS | 45.0% |
| !! | TCTACTGGACTTTTCTGGAG+GGG | + | chr7.3:61546095-61546114 | MS.gene83245:CDS | 45.0% |
| !! | AAAAATAACATTAAATTTAT+TGG | + | chr7.3:61544521-61544540 | MS.gene83245:intron | 5.0% |
| !! | AAAATAAAATATAATTACTA+AGG | - | chr7.3:61543955-61543974 | None:intergenic | 5.0% |
| ATTAGGCGTGTTCCGATGTC+GGG | + | chr7.3:61543421-61543440 | MS.gene83245:intron | 50.0% | |
| GGGCTAAAGGAACTTGTGTG+TGG | + | chr7.3:61544702-61544721 | MS.gene83245:intron | 50.0% | |
| GTGAAGCACATGTACGGACA+GGG | - | chr7.3:61543528-61543547 | None:intergenic | 50.0% | |
| TGTGAAGCACATGTACGGAC+AGG | - | chr7.3:61543529-61543548 | None:intergenic | 50.0% | |
| ! | GCAACATCATTTGCTGCCAC+TGG | - | chr7.3:61545105-61545124 | None:intergenic | 50.0% |
| ACATGTACGGACAGGGACAC+CGG | - | chr7.3:61543521-61543540 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 61542911 | 61546552 | 61542911 | ID=MS.gene83245 |
| chr7.3 | mRNA | 61542911 | 61546552 | 61542911 | ID=MS.gene83245.t1;Parent=MS.gene83245 |
| chr7.3 | exon | 61542911 | 61543029 | 61542911 | ID=MS.gene83245.t1.exon1;Parent=MS.gene83245.t1 |
| chr7.3 | CDS | 61542911 | 61543029 | 61542911 | ID=cds.MS.gene83245.t1;Parent=MS.gene83245.t1 |
| chr7.3 | exon | 61543129 | 61543261 | 61543129 | ID=MS.gene83245.t1.exon2;Parent=MS.gene83245.t1 |
| chr7.3 | CDS | 61543129 | 61543261 | 61543129 | ID=cds.MS.gene83245.t1;Parent=MS.gene83245.t1 |
| chr7.3 | exon | 61545096 | 61545185 | 61545096 | ID=MS.gene83245.t1.exon3;Parent=MS.gene83245.t1 |
| chr7.3 | CDS | 61545096 | 61545185 | 61545096 | ID=cds.MS.gene83245.t1;Parent=MS.gene83245.t1 |
| chr7.3 | exon | 61545287 | 61545411 | 61545287 | ID=MS.gene83245.t1.exon4;Parent=MS.gene83245.t1 |
| chr7.3 | CDS | 61545287 | 61545411 | 61545287 | ID=cds.MS.gene83245.t1;Parent=MS.gene83245.t1 |
| chr7.3 | exon | 61545522 | 61545564 | 61545522 | ID=MS.gene83245.t1.exon5;Parent=MS.gene83245.t1 |
| chr7.3 | CDS | 61545522 | 61545564 | 61545522 | ID=cds.MS.gene83245.t1;Parent=MS.gene83245.t1 |
| chr7.3 | exon | 61546042 | 61546159 | 61546042 | ID=MS.gene83245.t1.exon6;Parent=MS.gene83245.t1 |
| chr7.3 | CDS | 61546042 | 61546159 | 61546042 | ID=cds.MS.gene83245.t1;Parent=MS.gene83245.t1 |
| chr7.3 | exon | 61546250 | 61546299 | 61546250 | ID=MS.gene83245.t1.exon7;Parent=MS.gene83245.t1 |
| chr7.3 | CDS | 61546250 | 61546299 | 61546250 | ID=cds.MS.gene83245.t1;Parent=MS.gene83245.t1 |
| chr7.3 | exon | 61546418 | 61546552 | 61546418 | ID=MS.gene83245.t1.exon8;Parent=MS.gene83245.t1 |
| chr7.3 | CDS | 61546418 | 61546552 | 61546418 | ID=cds.MS.gene83245.t1;Parent=MS.gene83245.t1 |
| Gene Sequence |
| Protein sequence |
