AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050752


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050752.t1 MTR_7g112090 99.482 193 1 0 1 193 1 193 4.70e-143 396
MS.gene050752.t1 MTR_2g034640 93.264 193 13 0 1 193 1 193 1.45e-137 382
MS.gene050752.t1 MTR_4g121860 89.637 193 20 0 1 193 1 193 1.15e-133 372
MS.gene050752.t1 MTR_4g128910 33.523 176 105 1 18 193 15 178 6.39e-28 103
MS.gene050752.t1 MTR_5g016540 32.203 177 104 2 18 192 15 177 2.46e-25 97.1
MS.gene050752.t1 MTR_6g005820 31.073 177 106 2 18 192 15 177 4.83e-24 93.6
MS.gene050752.t1 MTR_5g034130 31.073 177 106 2 18 192 15 177 5.15e-24 93.6
MS.gene050752.t1 MTR_5g034125 31.073 177 106 2 18 192 15 177 5.15e-24 93.6
MS.gene050752.t1 MTR_7g109960 31.073 177 106 2 18 192 15 177 5.37e-24 93.6
MS.gene050752.t1 MTR_1g086480 31.073 177 106 2 18 192 15 177 5.37e-24 93.6
MS.gene050752.t1 MTR_1g076550 35.088 171 99 2 19 189 16 174 1.46e-23 92.4
MS.gene050752.t1 MTR_4g026950 37.778 135 77 2 22 152 2 133 3.21e-23 91.3
MS.gene050752.t1 MTR_2g022200 37.584 149 81 3 15 151 7 155 3.54e-23 92.0
MS.gene050752.t1 MTR_8g077540 32.164 171 105 1 22 192 18 177 3.54e-23 91.7
MS.gene050752.t1 MTR_5g007810 29.319 191 115 3 3 193 8 178 4.15e-23 91.7
MS.gene050752.t1 MTR_8g077540 32.164 171 105 1 22 192 44 203 9.11e-23 91.3
MS.gene050752.t1 MTR_4g077640 29.319 191 115 3 3 193 8 178 1.43e-22 90.1
MS.gene050752.t1 MTR_5g007820 34.848 132 82 2 20 148 17 147 2.12e-22 89.7
MS.gene050752.t1 MTR_5g015370 36.601 153 95 2 1 152 1 152 2.45e-22 89.4
MS.gene050752.t1 MTR_5g078090 36.296 135 85 1 18 151 17 151 5.98e-22 88.2
MS.gene050752.t1 MTR_5g098820 85.000 40 6 0 39 78 1 40 1.58e-18 78.2
MS.gene050752.t1 MTR_5g098820 82.857 35 6 0 44 78 69 103 1.07e-14 68.2
MS.gene050752.t1 MTR_8g077540 36.458 96 61 0 22 117 18 113 4.09e-16 71.6
MS.gene050752.t1 MTR_5g007840 32.283 127 74 2 20 146 17 131 1.69e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050752.t1 AT4G02080 94.819 193 10 0 1 193 1 193 5.24e-139 386
MS.gene050752.t1 AT3G62560 93.750 192 12 0 1 192 1 192 1.61e-136 379
MS.gene050752.t1 AT1G56330 91.667 192 16 0 1 192 1 192 1.01e-133 372
MS.gene050752.t1 AT1G09180 87.047 193 25 0 1 193 1 193 6.08e-127 355
MS.gene050752.t1 AT1G02620 87.387 111 14 0 83 193 12 122 8.84e-71 211
MS.gene050752.t1 AT2G24765 34.091 176 104 1 18 193 15 178 1.13e-27 103
MS.gene050752.t1 AT3G49870 38.562 153 92 2 1 152 1 152 3.95e-26 99.4
MS.gene050752.t1 AT5G67560 36.424 151 90 2 3 152 7 152 5.03e-25 96.3
MS.gene050752.t1 AT3G49870 40.310 129 76 1 25 152 5 133 1.54e-24 94.7
MS.gene050752.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene050752.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene050752.t1 AT2G47170 31.016 187 113 2 8 192 5 177 2.04e-24 94.7
MS.gene050752.t1 AT3G22950 34.483 174 102 2 19 192 16 177 2.21e-24 94.7
MS.gene050752.t1 AT3G22950 34.483 174 102 2 19 192 16 177 2.21e-24 94.7
MS.gene050752.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene050752.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene050752.t1 AT3G62290 31.016 187 113 2 8 192 5 177 2.87e-24 94.4
MS.gene050752.t1 AT1G10630 31.073 177 106 2 18 192 15 177 5.34e-24 93.6
MS.gene050752.t1 AT1G10630 31.073 177 106 2 18 192 15 177 5.34e-24 93.6
MS.gene050752.t1 AT5G14670 31.073 177 106 2 18 192 15 177 5.39e-24 93.6
MS.gene050752.t1 AT5G14670 31.073 177 106 2 18 192 15 177 5.39e-24 93.6
MS.gene050752.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050752.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050752.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050752.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050752.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050752.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050752.t1 AT1G23490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050752.t1 AT1G70490 31.073 177 106 2 18 192 15 177 5.51e-24 93.6
MS.gene050752.t1 AT5G14670 31.073 177 106 2 18 192 15 177 6.58e-24 93.6
MS.gene050752.t1 AT2G24765 40.708 113 67 0 18 130 15 127 6.79e-24 92.0
MS.gene050752.t1 AT2G18390 32.749 171 104 1 22 192 18 177 8.53e-24 93.2
MS.gene050752.t1 AT3G49860 37.143 140 87 1 15 153 6 145 1.18e-23 92.8
MS.gene050752.t1 AT5G37680 36.029 136 86 1 18 152 17 152 1.38e-22 90.1
MS.gene050752.t1 AT5G17060 28.796 191 116 3 3 193 8 178 3.53e-22 89.4
MS.gene050752.t1 AT5G17060 28.796 191 116 3 3 193 8 178 3.53e-22 89.4
MS.gene050752.t1 AT3G03120 32.877 146 90 1 3 148 8 145 9.68e-22 88.2
MS.gene050752.t1 AT2G15310 29.189 185 119 1 8 192 5 177 9.86e-22 88.2
MS.gene050752.t1 AT5G52210 36.242 149 77 3 15 148 7 152 3.34e-20 84.3
MS.gene050752.t1 AT5G52210 36.242 149 77 3 15 148 7 152 3.34e-20 84.3
MS.gene050752.t1 AT3G03120 32.061 131 81 1 3 133 8 130 5.19e-20 82.0
MS.gene050752.t1 AT5G37680 38.835 103 63 0 50 152 3 105 2.46e-18 77.8
MS.gene050752.t1 AT1G02430 31.206 141 89 4 18 151 15 154 1.36e-14 68.6
MS.gene050752.t1 AT1G02430 31.206 141 89 4 18 151 15 154 2.30e-14 68.6

Find 44 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCAGTATTGTGAAGAAAA+TGG 0.290748 7.2:+4629342 MS.gene050752:CDS
TTCTAGCATCGCTTGGATTA+TGG 0.331495 7.2:+4627185 MS.gene050752:CDS
AGACGAATTGCGTTACCATT+TGG 0.332275 7.2:+4629243 MS.gene050752:CDS
GACGAATTGCGTTACCATTT+GGG 0.348316 7.2:+4629244 MS.gene050752:CDS
GAGGCTAAGATCTTATTCTT+AGG 0.351250 7.2:+4627214 MS.gene050752:CDS
TCTCCTTTCTGATGAATCAT+TGG 0.399431 7.2:+4629162 MS.gene050752:CDS
AATGTCCCTTTCCTTGTCCT+TGG 0.407599 7.2:+4629187 MS.gene050752:CDS
ATCAGATTGCTCGTAGAGTC+TGG 0.419780 7.2:+4627953 MS.gene050752:CDS
CATCAGAAGAGTTGAGTATT+GGG 0.422638 7.2:+4627896 MS.gene050752:CDS
TCGTCTTCTGAGGCAGCATA+TGG 0.429799 7.2:-4629226 None:intergenic
GATACTGAGTCGGCTGATGC+TGG 0.450131 7.2:-4627870 None:intergenic
GTTATGGTGATGGTTTCAAA+TGG 0.456424 7.2:+4629365 MS.gene050752:CDS
TACGGGGTTCTAGCATCGCT+TGG 0.473883 7.2:+4627178 MS.gene050752:CDS
TTATGGTGATGGTTTCAAAT+GGG 0.483238 7.2:+4629366 MS.gene050752:CDS
ACATCAGAAGAGTTGAGTAT+TGG 0.487462 7.2:+4627895 MS.gene050752:CDS
GGCTTGAGCAACTTCACCAC+TGG 0.494395 7.2:+4629265 MS.gene050752:CDS
TGCAGTATTGTGAAGAAAAT+GGG 0.501905 7.2:+4629343 MS.gene050752:CDS
TGAAGTTGCTCAAGCCCAAA+TGG 0.508916 7.2:-4629258 None:intergenic
TGTTTCCAAGGACAAGGAAA+GGG 0.516162 7.2:-4629192 None:intergenic
GGTAGATGCAGTGGTCTACT+TGG 0.525431 7.2:+4629087 MS.gene050752:intron
CTTCACCACTGGCAAGGGTA+AGG 0.533342 7.2:+4629276 MS.gene050752:CDS
TTGTTTCCAAGGACAAGGAA+AGG 0.535849 7.2:-4629193 None:intergenic
AAGAAAATGGGTTATGGTGA+TGG 0.542914 7.2:+4629355 MS.gene050752:CDS
TTGCCAATGATTCATCAGAA+AGG 0.547484 7.2:-4629165 None:intergenic
TTCTTAGGTCTCGACAACGC+CGG 0.556039 7.2:+4627229 MS.gene050752:CDS
GAGCAACTTCACCACTGGCA+AGG 0.556603 7.2:+4629270 MS.gene050752:CDS
AGCAACTTCACCACTGGCAA+GGG 0.561923 7.2:+4629271 MS.gene050752:CDS
ATTGTGAAGAAAATGGGTTA+TGG 0.564263 7.2:+4629349 MS.gene050752:CDS
CTGGAAAGATTACTATGCCC+AGG 0.565879 7.2:+4627972 MS.gene050752:CDS
CTTGGTTGATGCTTATGACA+AGG 0.569852 7.2:+4629105 MS.gene050752:CDS
AGACTCAAATGTCCGACCCA+TGG 0.577020 7.2:+4629309 MS.gene050752:CDS
GCTTGGATTATGGCAGAAAG+AGG 0.588367 7.2:+4627195 MS.gene050752:CDS
ATACTCAACTCTTCTGATGT+CGG 0.590024 7.2:-4627892 None:intergenic
TCTGATGTCGGATACTGAGT+CGG 0.590760 7.2:-4627880 None:intergenic
ACTGCACATGAATACCTCCA+TGG 0.596081 7.2:-4629326 None:intergenic
CTGCACATGAATACCTCCAT+GGG 0.601771 7.2:-4629325 None:intergenic
GTCTTTGAGCATATGAAGCA+AGG 0.603316 7.2:-4627260 None:intergenic
GCTTCATATGCTCAAAGACG+AGG 0.605146 7.2:+4627264 MS.gene050752:CDS
GTAACGCAATTCGTCTTCTG+AGG 0.630635 7.2:-4629236 None:intergenic
ATTTACCTTACCCTTGCCAG+TGG 0.635981 7.2:-4629281 None:intergenic
TGCAATGCAGGTAGATGCAG+TGG 0.654691 7.2:+4629078 MS.gene050752:intron
CTCAAATGTCCGACCCATGG+AGG 0.662910 7.2:+4629312 MS.gene050752:CDS
ACATGAATACCTCCATGGGT+CGG 0.682919 7.2:-4629321 None:intergenic
TTTGAGCATATGAAGCAAGG+TGG 0.690241 7.2:-4627257 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATGATAATAATAAG+TGG - chr7.2:4627306-4627325 None:intergenic 10.0%
!! TAATAATGATAATAATAAGT+GGG - chr7.2:4627305-4627324 None:intergenic 10.0%
!! ATATCTTAATCATGAAAATT+TGG + chr7.2:4628052-4628071 MS.gene050752:intron 15.0%
!! AGACATAATATAATATAGGA+AGG - chr7.2:4628089-4628108 None:intergenic 20.0%
!! AGCAATAGTATAAAATGAAA+AGG - chr7.2:4628928-4628947 None:intergenic 20.0%
!! TCCAAGACATAATATAATAT+AGG - chr7.2:4628093-4628112 None:intergenic 20.0%
!! TCCTATATTATATTATGTCT+TGG + chr7.2:4628089-4628108 MS.gene050752:intron 20.0%
!!! AAGTTTAAAGCTTTTGATTT+GGG + chr7.2:4627925-4627944 MS.gene050752:CDS 20.0%
!!! ATAGAATATTTTGTAGTCAA+AGG + chr7.2:4627396-4627415 MS.gene050752:intron 20.0%
! ATACAATGGATAGAATAGAA+GGG - chr7.2:4628579-4628598 None:intergenic 25.0%
! ATTATATTATGTCTTGGACT+TGG + chr7.2:4628095-4628114 MS.gene050752:intron 25.0%
! TAAACATATCTCAACAAAAG+TGG - chr7.2:4627606-4627625 None:intergenic 25.0%
! TATACAATGGATAGAATAGA+AGG - chr7.2:4628580-4628599 None:intergenic 25.0%
! TCTTATGTTCTTTACCATAA+TGG + chr7.2:4628256-4628275 MS.gene050752:intron 25.0%
! TTATAAGCTACTGTATACAA+TGG - chr7.2:4628593-4628612 None:intergenic 25.0%
!! GTTTCTTTTATGATGAGAAT+TGG + chr7.2:4627831-4627850 MS.gene050752:intron 25.0%
!! TATTACCGATATTGTTCTTT+TGG + chr7.2:4627323-4627342 MS.gene050752:intron 25.0%
!! TCAAAGTCAAATTGATTCAA+CGG - chr7.2:4628650-4628669 None:intergenic 25.0%
!!! AGTTTAAAGCTTTTGATTTG+GGG + chr7.2:4627926-4627945 MS.gene050752:CDS 25.0%
!!! CAAGTTTAAAGCTTTTGATT+TGG + chr7.2:4627924-4627943 MS.gene050752:CDS 25.0%
!!! GAATATCAATTTTGTTTCCA+AGG - chr7.2:4629207-4629226 None:intergenic 25.0%
!!! GTAACTTTATTTTGTTTGTG+TGG + chr7.2:4628124-4628143 MS.gene050752:intron 25.0%
!!! TTACTGTTGATAATGTTTTG+TGG + chr7.2:4627370-4627389 MS.gene050752:intron 25.0%
AAAATACTACTTCATGTTCG+AGG - chr7.2:4628784-4628803 None:intergenic 30.0%
AAACCATTAGAAGGATTTAG+AGG + chr7.2:4628357-4628376 MS.gene050752:intron 30.0%
AAATGACTGTGTTTCCATTA+TGG - chr7.2:4628273-4628292 None:intergenic 30.0%
AACACACCAAAACAAGTTAA+GGG - chr7.2:4627639-4627658 None:intergenic 30.0%
AGAAACATTATACCAAGACT+CGG - chr7.2:4627817-4627836 None:intergenic 30.0%
AGATTCTAAGCCAATATCTT+AGG - chr7.2:4628203-4628222 None:intergenic 30.0%
AGTACCTTATAAGACATTTC+TGG + chr7.2:4628951-4628970 MS.gene050752:intron 30.0%
CCATTCCAAAAGAACAATAT+CGG - chr7.2:4627331-4627350 None:intergenic 30.0%
TATAGAACTGCCTAAGATAT+TGG + chr7.2:4628190-4628209 MS.gene050752:intron 30.0%
TCTCAGTTAAATATTGAGCA+GGG - chr7.2:4628877-4628896 None:intergenic 30.0%
TGAGATATGTTTATCCAAAC+AGG + chr7.2:4627613-4627632 MS.gene050752:intron 30.0%
TGCAGTATTGTGAAGAAAAT+GGG + chr7.2:4629343-4629362 MS.gene050752:CDS 30.0%
TGGTTTATGATAGAACACTA+TGG + chr7.2:4628401-4628420 MS.gene050752:intron 30.0%
TTCTCAGTTAAATATTGAGC+AGG - chr7.2:4628878-4628897 None:intergenic 30.0%
TTGTAAGAGAAACCATTAGA+AGG + chr7.2:4628348-4628367 MS.gene050752:intron 30.0%
TTTACACTTATTACTGTCAG+CGG + chr7.2:4627430-4627449 MS.gene050752:intron 30.0%
! AAACCATCAAGTTTGTTTCT+CGG - chr7.2:4628841-4628860 None:intergenic 30.0%
! CAATGAGTTGGATTCAAATA+TGG + chr7.2:4628381-4628400 MS.gene050752:intron 30.0%
!! AAGATTTGCTGAGTCAAAAA+AGG + chr7.2:4629129-4629148 MS.gene050752:CDS 30.0%
!! ACAAAAAAGTATTGAAGGCA+TGG - chr7.2:4628009-4628028 None:intergenic 30.0%
!! ATTGTGAAGAAAATGGGTTA+TGG + chr7.2:4629349-4629368 MS.gene050752:CDS 30.0%
!! TAGCCACAAAAAAGTATTGA+AGG - chr7.2:4628014-4628033 None:intergenic 30.0%
!! TTATGGTGATGGTTTCAAAT+GGG + chr7.2:4629366-4629385 MS.gene050752:CDS 30.0%
!!! ATGCCTTCAATACTTTTTTG+TGG + chr7.2:4628008-4628027 MS.gene050752:intron 30.0%
!!! ATTGTTCTTTTGGAATGGAA+CGG + chr7.2:4627333-4627352 MS.gene050752:intron 30.0%
!!! GTTTAAAGCTTTTGATTTGG+GGG + chr7.2:4627927-4627946 MS.gene050752:CDS 30.0%
!!! TTTAAAGCTTTTGATTTGGG+GGG + chr7.2:4627928-4627947 MS.gene050752:CDS 30.0%
!!! TTTTTGGTGGATTGGTTTTA+CGG + chr7.2:4627160-4627179 MS.gene050752:CDS 30.0%
ACATCAGAAGAGTTGAGTAT+TGG + chr7.2:4627895-4627914 MS.gene050752:CDS 35.0%
AGAAACCAGAAAAGATTACG+TGG - chr7.2:4627744-4627763 None:intergenic 35.0%
AGAGCCAGAAATGTCTTATA+AGG - chr7.2:4628958-4628977 None:intergenic 35.0%
ATACTCAACTCTTCTGATGT+CGG - chr7.2:4627895-4627914 None:intergenic 35.0%
ATATCTTTATCTCCGAGTCT+TGG + chr7.2:4627802-4627821 MS.gene050752:intron 35.0%
ATGAAAATTTGGATGCCAGT+AGG + chr7.2:4628063-4628082 MS.gene050752:intron 35.0%
CAACACACCAAAACAAGTTA+AGG - chr7.2:4627640-4627659 None:intergenic 35.0%
CATCAGAAGAGTTGAGTATT+GGG + chr7.2:4627896-4627915 MS.gene050752:CDS 35.0%
GAGGCTAAGATCTTATTCTT+AGG + chr7.2:4627214-4627233 MS.gene050752:CDS 35.0%
GTGCAGTATTGTGAAGAAAA+TGG + chr7.2:4629342-4629361 MS.gene050752:CDS 35.0%
TAACCGAGAAACAAACTTGA+TGG + chr7.2:4628835-4628854 MS.gene050752:intron 35.0%
TAATCAGATGTGCACATTCT+AGG + chr7.2:4628689-4628708 MS.gene050752:intron 35.0%
TACATACACTCTACTTGCTT+TGG + chr7.2:4628736-4628755 MS.gene050752:intron 35.0%
TATAATATAGGAAGGCCTAC+TGG - chr7.2:4628081-4628100 None:intergenic 35.0%
TCTCCTTTCTGATGAATCAT+TGG + chr7.2:4629162-4629181 MS.gene050752:CDS 35.0%
TGACCTCTAAATCCTTCTAA+TGG - chr7.2:4628363-4628382 None:intergenic 35.0%
TTGCCAATGATTCATCAGAA+AGG - chr7.2:4629168-4629187 None:intergenic 35.0%
! AAACTTGATGGTTTGGACTT+TGG + chr7.2:4628847-4628866 MS.gene050752:intron 35.0%
! GAGAAACAAACTTGATGGTT+TGG + chr7.2:4628840-4628859 MS.gene050752:intron 35.0%
! TTGAGTTTGCTTGTTCAACT+AGG + chr7.2:4628666-4628685 MS.gene050752:intron 35.0%
!! AAGAAAATGGGTTATGGTGA+TGG + chr7.2:4629355-4629374 MS.gene050752:CDS 35.0%
!! CAATTTTGTTTCCAAGGACA+AGG - chr7.2:4629201-4629220 None:intergenic 35.0%
!! CCGATATTGTTCTTTTGGAA+TGG + chr7.2:4627328-4627347 MS.gene050752:intron 35.0%
!! GTTATGGTGATGGTTTCAAA+TGG + chr7.2:4629365-4629384 MS.gene050752:CDS 35.0%
!!! CTTTATTTTGTTTGTGTGGC+TGG + chr7.2:4628128-4628147 MS.gene050752:intron 35.0%
!!! TTTTGGTGGATTGGTTTTAC+GGG + chr7.2:4627161-4627180 MS.gene050752:CDS 35.0%
AAACAAGTTAAGGGCCTGTT+TGG - chr7.2:4627630-4627649 None:intergenic 40.0%
AACTGAGAAACATTACGTGC+TGG + chr7.2:4629015-4629034 MS.gene050752:intron 40.0%
AGACGAATTGCGTTACCATT+TGG + chr7.2:4629243-4629262 MS.gene050752:CDS 40.0%
ATACACTCTACTTGCTTTGG+TGG + chr7.2:4628739-4628758 MS.gene050752:intron 40.0%
ATCATGAGTTGTTGCAATGC+AGG + chr7.2:4629066-4629085 MS.gene050752:intron 40.0%
CAACGGCAGAAATGATTCAA+CGG - chr7.2:4628633-4628652 None:intergenic 40.0%
GACGAATTGCGTTACCATTT+GGG + chr7.2:4629244-4629263 MS.gene050752:CDS 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr7.2:4628369-4628388 MS.gene050752:intron 40.0%
GTCTTTGAGCATATGAAGCA+AGG - chr7.2:4627263-4627282 None:intergenic 40.0%
TGCTGAGTCAAAAAAGGAGT+TGG + chr7.2:4629135-4629154 MS.gene050752:CDS 40.0%
TGTTTCCAAGGACAAGGAAA+GGG - chr7.2:4629195-4629214 None:intergenic 40.0%
TTCTAGCATCGCTTGGATTA+TGG + chr7.2:4627185-4627204 MS.gene050752:CDS 40.0%
TTGTTTCCAAGGACAAGGAA+AGG - chr7.2:4629196-4629215 None:intergenic 40.0%
TTTGAGCATATGAAGCAAGG+TGG - chr7.2:4627260-4627279 None:intergenic 40.0%
! AAAGCCTTATCCCACTAAGT+GGG - chr7.2:4628451-4628470 None:intergenic 40.0%
! CTTGGTTGATGCTTATGACA+AGG + chr7.2:4629105-4629124 MS.gene050752:CDS 40.0%
! TTCGACCACGTAATCTTTTC+TGG + chr7.2:4627736-4627755 MS.gene050752:intron 40.0%
!!! AACAGGCCCTTAACTTGTTT+TGG + chr7.2:4627630-4627649 MS.gene050752:intron 40.0%
!!! TTGTTTTGGTGTGTTGCTCT+TGG + chr7.2:4627644-4627663 MS.gene050752:intron 40.0%
!!! TTTGGTGGATTGGTTTTACG+GGG + chr7.2:4627162-4627181 MS.gene050752:CDS 40.0%
AATGTCCCTTTCCTTGTCCT+TGG + chr7.2:4629187-4629206 MS.gene050752:CDS 45.0%
ACATGAATACCTCCATGGGT+CGG - chr7.2:4629324-4629343 None:intergenic 45.0%
ACTGCACATGAATACCTCCA+TGG - chr7.2:4629329-4629348 None:intergenic 45.0%
ATCAGATTGCTCGTAGAGTC+TGG + chr7.2:4627953-4627972 MS.gene050752:CDS 45.0%
ATTTACCTTACCCTTGCCAG+TGG - chr7.2:4629284-4629303 None:intergenic 45.0%
CACTTAGTGGGATAAGGCTT+TGG + chr7.2:4628450-4628469 MS.gene050752:intron 45.0%
CTGCACATGAATACCTCCAT+GGG - chr7.2:4629328-4629347 None:intergenic 45.0%
CTGGAAAGATTACTATGCCC+AGG + chr7.2:4627972-4627991 MS.gene050752:CDS 45.0%
GCATGGAAAAAGAGAGACCT+GGG - chr7.2:4627992-4628011 None:intergenic 45.0%
GCTTCATATGCTCAAAGACG+AGG + chr7.2:4627264-4627283 MS.gene050752:CDS 45.0%
GCTTGGATTATGGCAGAAAG+AGG + chr7.2:4627195-4627214 MS.gene050752:CDS 45.0%
GTAACGCAATTCGTCTTCTG+AGG - chr7.2:4629239-4629258 None:intergenic 45.0%
TCTGATGTCGGATACTGAGT+CGG - chr7.2:4627883-4627902 None:intergenic 45.0%
TGAAGTTGCTCAAGCCCAAA+TGG - chr7.2:4629261-4629280 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7.2:4628450-4628469 None:intergenic 45.0%
! CAAAGCCTTATCCCACTAAG+TGG - chr7.2:4628452-4628471 None:intergenic 45.0%
! TACTGTCAGCGGAGTTTTCT+AGG + chr7.2:4627441-4627460 MS.gene050752:intron 45.0%
!! ATGAAGCAAGGTGGTTTTGC+CGG - chr7.2:4627251-4627270 None:intergenic 45.0%
!! TTTTGTTTGTGTGGCTGGAC+TGG + chr7.2:4628133-4628152 MS.gene050752:intron 45.0%
ACTAAGTGGGGTCAGGTACA+TGG - chr7.2:4628438-4628457 None:intergenic 50.0%
AGACTCAAATGTCCGACCCA+TGG + chr7.2:4629309-4629328 MS.gene050752:CDS 50.0%
AGCAACTTCACCACTGGCAA+GGG + chr7.2:4629271-4629290 MS.gene050752:CDS 50.0%
ATGTACCTGACCCCACTTAG+TGG + chr7.2:4628437-4628456 MS.gene050752:intron 50.0%
GGCATGGAAAAAGAGAGACC+TGG - chr7.2:4627993-4628012 None:intergenic 50.0%
GGTAGATGCAGTGGTCTACT+TGG + chr7.2:4629087-4629106 MS.gene050752:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG + chr7.2:4628444-4628463 MS.gene050752:intron 50.0%
TGCAATGCAGGTAGATGCAG+TGG + chr7.2:4629078-4629097 MS.gene050752:intron 50.0%
TGTACCTGACCCCACTTAGT+GGG + chr7.2:4628438-4628457 MS.gene050752:intron 50.0%
TTATCCCACTAAGTGGGGTC+AGG - chr7.2:4628445-4628464 None:intergenic 50.0%
TTCTTAGGTCTCGACAACGC+CGG + chr7.2:4627229-4627248 MS.gene050752:CDS 50.0%
!! TCGTCTTCTGAGGCAGCATA+TGG - chr7.2:4629229-4629248 None:intergenic 50.0%
CTCAAATGTCCGACCCATGG+AGG + chr7.2:4629312-4629331 MS.gene050752:CDS 55.0%
CTTCACCACTGGCAAGGGTA+AGG + chr7.2:4629276-4629295 MS.gene050752:CDS 55.0%
GAGCAACTTCACCACTGGCA+AGG + chr7.2:4629270-4629289 MS.gene050752:CDS 55.0%
GATACTGAGTCGGCTGATGC+TGG - chr7.2:4627873-4627892 None:intergenic 55.0%
GGCTTGAGCAACTTCACCAC+TGG + chr7.2:4629265-4629284 MS.gene050752:CDS 55.0%
! TACGGGGTTCTAGCATCGCT+TGG + chr7.2:4627178-4627197 MS.gene050752:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4627157 4629408 4627157 ID=MS.gene050752
chr7.2 mRNA 4627157 4629408 4627157 ID=MS.gene050752.t1;Parent=MS.gene050752
chr7.2 exon 4627157 4627285 4627157 ID=MS.gene050752.t1.exon1;Parent=MS.gene050752.t1
chr7.2 CDS 4627157 4627285 4627157 ID=cds.MS.gene050752.t1;Parent=MS.gene050752.t1
chr7.2 exon 4627862 4627993 4627862 ID=MS.gene050752.t1.exon2;Parent=MS.gene050752.t1
chr7.2 CDS 4627862 4627993 4627862 ID=cds.MS.gene050752.t1;Parent=MS.gene050752.t1
chr7.2 exon 4629088 4629408 4629088 ID=MS.gene050752.t1.exon3;Parent=MS.gene050752.t1
chr7.2 CDS 4629088 4629408 4629088 ID=cds.MS.gene050752.t1;Parent=MS.gene050752.t1
Gene Sequence

>MS.gene050752

ATGTTTTTGGTGGATTGGTTTTACGGGGTTCTAGCATCGCTTGGATTATGGCAGAAAGAGGCTAAGATCTTATTCTTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCATATGCTCAAAGACGAGGTTTGTTCTTCAATTTCCCACTTATTATTATCATTATTATTACCGATATTGTTCTTTTGGAATGGAACGGATCTGTGATCTTATTTACTGTTGATAATGTTTTGTGGTTAATAGAATATTTTGTAGTCAAAGGAGTTCATGATTTTTACACTTATTACTGTCAGCGGAGTTTTCTAGGATCAATATGATATATTATACATGTTTCTGAGAAATTTCGCAATTGTGTTACTTAGATACTCAATCAACATAATTTCATTTGCTCTTAGTTTAAAATTATTTCGCAGTTTTCTAAAATATTGATTAATTTCTCAGTTTTTCCACTTTTGTTGAGATATGTTTATCCAAACAGGCCCTTAACTTGTTTTGGTGTGTTGCTCTTGGTCTCTTATCTTGACATCTAGCATCTGTTTTAAAATTTTATTGTGATTGCTCATATCTGTATTATTTTGTTTCGACCACGTAATCTTTTCTGGTTTCTGCAAGCAATGCATTTTGATAGTTAACAAGCGTGTGTCTATATCTTTATCTCCGAGTCTTGGTATAATGTTTCTTTTATGATGAGAATTGGTTTTGCAGAGATTAGTCCAGCATCAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGGGGTCATCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTCTCTCTTTTTCCATGCCTTCAATACTTTTTTGTGGCTAGTGTAGCAAAGTGAGAGAATATCTTAATCATGAAAATTTGGATGCCAGTAGGCCTTCCTATATTATATTATGTCTTGGACTTGGAAACATGTAACTTTATTTTGTTTGTGTGGCTGGACTGGCTAATTTGTGTGTTTATCAGTTAGTGATTTCAGATATAGAACTGCCTAAGATATTGGCTTAGAATCTACAAACAAATTCTAACAGTCATGAAGATTTTATTCTTATGTTCTTTACCATAATGGAAACACAGTCATTTAGTTTTTAAAAAAGTAAATAAATTATTGACAAATTTTTAGTTTTTAAAAATATTATTGTAAGAGAAACCATTAGAAGGATTTAGAGGTCAATGAGTTGGATTCAAATATGGTTTATGATAGAACACTATGGCGTAATTTGATCCATGTACCTGACCCCACTTAGTGGGATAAGGCTTTGGTTGTTGTTGTAAAATATTATTGTAAAAAATAACTACTATCTTGTTGCAGAATGTTCTTATATCTAACAAATTACATGAATACAGCTTAAGCTAAAGATTTATGCCCTTCTATTCTATCCATTGTATACAGTAGCTTATAATTTATAAGACATTTCTGCCGTTGAATCATTTCTGCCGTTGAATCAATTTGACTTTGAGTTTGCTTGTTCAACTAGGTAATCAGATGTGCACATTCTAGGAAGAATTATTTCATAAGAGATTAATACATACACTCTACTTGCTTTGGTGGTAGAATCTAATTCAATGCACCTCGAACATGAAGTAGTATTTTGTAGCTTTGTTACTACAAAAGTTCAATGTTTTAACCGAGAAACAAACTTGATGGTTTGGACTTTGGTGTTCCCTGCTCAATATTTAACTGAGAAACAAACATGATGAGTTGCTGATAGCTGCCTTTTCATTTTATACTATTGCTTACAGTACCTTATAAGACATTTCTGGCTCTGAATCAATTTACAACTTAGTAACTTGTTCAATATTTTAACTGAGAAACATTACGTGCTGGTGCTCATTATTTTTTTTACTTCATTGTGATCATGAGTTGTTGCAATGCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAATCATTGGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGCTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGTCAGACTCAAATGTCCGACCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGTGATGGTTTCAAATGGGTTTCTCAGTACATCAAATAG

Protein sequence

>MS.gene050752.t1

MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK