Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84632.t1 | GAU34167.1 | 79.3 | 241 | 44 | 2 | 1 | 236 | 1 | 240 | 1.60E-101 | 379 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84632.t1 | Q14191 | 32.9 | 152 | 99 | 2 | 79 | 229 | 78 | 227 | 1.0e-16 | 88.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84632.t1 | A0A2Z6NW07 | 79.3 | 241 | 44 | 2 | 1 | 236 | 1 | 240 | 1.1e-101 | 379.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene84632 | 0.816681 | 4.88E-52 | -1.69E-46 |
| MS.gene055060 | MS.gene84632 | 0.863776 | 1.96E-64 | -1.69E-46 |
| MS.gene057451 | MS.gene84632 | 0.800866 | 1.18E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84632.t1 | AT4G13870 | 34.416 | 154 | 96 | 4 | 78 | 229 | 128 | 278 | 8.79e-21 | 89.0 |
| MS.gene84632.t1 | AT4G13870 | 34.416 | 154 | 96 | 4 | 78 | 229 | 128 | 278 | 1.14e-20 | 88.6 |
| MS.gene84632.t1 | AT3G12410 | 29.577 | 213 | 124 | 7 | 38 | 226 | 12 | 222 | 3.60e-20 | 85.9 |
| MS.gene84632.t1 | AT2G36110 | 31.694 | 183 | 113 | 5 | 46 | 226 | 26 | 198 | 1.32e-17 | 79.3 |
| MS.gene84632.t1 | AT3G12460 | 25.225 | 222 | 132 | 5 | 38 | 226 | 11 | 231 | 6.78e-15 | 72.0 |
| MS.gene84632.t1 | AT3G12430 | 31.915 | 141 | 93 | 3 | 88 | 226 | 91 | 230 | 1.63e-14 | 70.9 |
| MS.gene84632.t1 | AT3G12470 | 32.051 | 156 | 102 | 4 | 73 | 226 | 51 | 204 | 9.26e-14 | 68.6 |
| MS.gene84632.t1 | AT3G12420 | 28.994 | 169 | 78 | 5 | 38 | 165 | 11 | 178 | 8.07e-13 | 65.1 |
| MS.gene84632.t1 | AT3G12440 | 30.588 | 170 | 110 | 5 | 66 | 228 | 179 | 347 | 1.72e-12 | 66.2 |
Find 100 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGTGTTGGTGTGGAGTT+TGG | 0.184677 | 7.3:+38622765 | None:intergenic |
| GTTGGTGTGGAGTTTGGGTT+GGG | 0.250221 | 7.3:+38622771 | None:intergenic |
| GAAGAGGGAAGTGGGGATGG+AGG | 0.262914 | 7.3:+38622470 | None:intergenic |
| GTGGAGTTTGGGTTGGGGAT+TGG | 0.299229 | 7.3:+38622777 | None:intergenic |
| TCCTGGCCGCGTTGGGAGTT+TGG | 0.310200 | 7.3:+38622561 | None:intergenic |
| AAGTGGGGATGGAGGGAGAG+TGG | 0.328316 | 7.3:+38622478 | None:intergenic |
| GGGACCAGGTGAGGAGGGTT+TGG | 0.329969 | 7.3:+38622661 | None:intergenic |
| GGGATAATCCATGGCTTGAT+TGG | 0.343930 | 7.3:-38622218 | MS.gene84632:CDS |
| ACGCCGACGAATCTGTTGTT+AGG | 0.344345 | 7.3:+38622432 | None:intergenic |
| AGGAAGGTGAAGAGGGAAGT+GGG | 0.344657 | 7.3:+38622462 | None:intergenic |
| AGGGTGTTGGTGTGGAGTTT+GGG | 0.344936 | 7.3:+38622766 | None:intergenic |
| GTTGGGGATTGGCATGGAGA+TGG | 0.347337 | 7.3:+38622788 | None:intergenic |
| ACATTAGCGGAACGTGTTCT+TGG | 0.348714 | 7.3:-38622282 | MS.gene84632:CDS |
| ATGTCGAGGCCGATGATTGC+GGG | 0.358531 | 7.3:+38622594 | None:intergenic |
| TGTTGGTGTGGAGTTTGGGT+TGG | 0.368729 | 7.3:+38622770 | None:intergenic |
| TTGGGGATTGGCATGGAGAT+GGG | 0.373295 | 7.3:+38622789 | None:intergenic |
| CCCCTTCTCACGTCGACACC+TGG | 0.375028 | 7.3:-38622641 | MS.gene84632:CDS |
| TGGAGATGGGTGTGTCGTTT+TGG | 0.376688 | 7.3:+38622802 | None:intergenic |
| CAGAGCTGGAGAGTGGCGGC+TGG | 0.386407 | 7.3:+38622534 | None:intergenic |
| TGGGTTATCCTGGCCGCGTT+GGG | 0.389115 | 7.3:+38622554 | None:intergenic |
| GGTGAAGAGGGAAGTGGGGA+TGG | 0.395784 | 7.3:+38622467 | None:intergenic |
| TTCTTTCCTTTGAGATTGCT+CGG | 0.399273 | 7.3:-38622164 | MS.gene84632:CDS |
| GTAGGTGTTGTGGGTGTCGT+AGG | 0.407318 | 7.3:+38622713 | None:intergenic |
| GAGTGGCGGCTGGGTTATCC+TGG | 0.409446 | 7.3:+38622544 | None:intergenic |
| GGGAGAGGGATTGGGTTTCG+AGG | 0.410114 | 7.3:+38622616 | None:intergenic |
| GTTTGGGTTGGGGATTGGCA+TGG | 0.414282 | 7.3:+38622782 | None:intergenic |
| GAGGAAGGTGAAGAGGGAAG+TGG | 0.420070 | 7.3:+38622461 | None:intergenic |
| GTTAGAGAGGAAGGTGAAGA+GGG | 0.423894 | 7.3:+38622455 | None:intergenic |
| GTTGTTAGGGTTAGAGAGGA+AGG | 0.431930 | 7.3:+38622446 | None:intergenic |
| TCGGCGTCTTTATTCTCATC+AGG | 0.434722 | 7.3:-38622145 | MS.gene84632:CDS |
| TAGGTGTTGTGGGTGTCGTA+GGG | 0.434919 | 7.3:+38622714 | None:intergenic |
| CATTAGCGGAACGTGTTCTT+GGG | 0.435126 | 7.3:-38622281 | MS.gene84632:CDS |
| TGGAGGGAGAGTGGATGAGA+TGG | 0.445211 | 7.3:+38622487 | None:intergenic |
| TTGGTGTGGAGTTTGGGTTG+GGG | 0.447045 | 7.3:+38622772 | None:intergenic |
| AAGAGGGAAGTGGGGATGGA+GGG | 0.448992 | 7.3:+38622471 | None:intergenic |
| AGCGGTTGTTTGTGCAGAGC+TGG | 0.450077 | 7.3:+38622520 | None:intergenic |
| AGTGGATGAGATGGAAGATA+AGG | 0.451037 | 7.3:+38622496 | None:intergenic |
| TCCAAACTCCCAACGCGGCC+AGG | 0.456447 | 7.3:-38622562 | MS.gene84632:CDS |
| GGAAGGTGAAGAGGGAAGTG+GGG | 0.462479 | 7.3:+38622463 | None:intergenic |
| GGATAATCCATGGCTTGATT+GGG | 0.464292 | 7.3:-38622217 | MS.gene84632:CDS |
| CTGGGTTATCCTGGCCGCGT+TGG | 0.465522 | 7.3:+38622553 | None:intergenic |
| GAGGGTTTGGATGGTGAAGG+TGG | 0.465836 | 7.3:+38622674 | None:intergenic |
| GGTGATGGAGTAGGTGTTGT+GGG | 0.466954 | 7.3:+38622704 | None:intergenic |
| TCCATGGCTTGATTGGGATC+AGG | 0.472812 | 7.3:-38622211 | MS.gene84632:CDS |
| AGCCAGGTGTCGACGTGAGA+AGG | 0.472968 | 7.3:+38622639 | None:intergenic |
| ATCGTGATTTGTTGAGAAGT+GGG | 0.475315 | 7.3:-38622311 | MS.gene84632:CDS |
| GATGTTGAAGGGTGTTGGTG+TGG | 0.478561 | 7.3:+38622758 | None:intergenic |
| GTCGATGAGGGTGATGTTGA+AGG | 0.488166 | 7.3:+38622746 | None:intergenic |
| GGTTAGAGAGGAAGGTGAAG+AGG | 0.488884 | 7.3:+38622454 | None:intergenic |
| CCATCCAAACCCTCCTCACC+TGG | 0.499536 | 7.3:-38622665 | MS.gene84632:CDS |
| GCCAGGTGTCGACGTGAGAA+GGG | 0.499887 | 7.3:+38622640 | None:intergenic |
| CGCCGACGAATCTGTTGTTA+GGG | 0.505935 | 7.3:+38622433 | None:intergenic |
| CCTTGCTGCTGAGGTGCTTG+AGG | 0.505955 | 7.3:-38622334 | MS.gene84632:CDS |
| TTCTATAAGCTTCTCGATGT+CGG | 0.506830 | 7.3:+38622398 | None:intergenic |
| CGAGGATTACGAGGAGTAGG+TGG | 0.508846 | 7.3:-38622239 | MS.gene84632:CDS |
| AGGGTGATGTTGAAGGGTGT+TGG | 0.516201 | 7.3:+38622753 | None:intergenic |
| AACAACAGATTCGTCGGCGT+CGG | 0.521128 | 7.3:-38622429 | MS.gene84632:CDS |
| GAAGGTGGTGTCGATGGTGA+TGG | 0.522246 | 7.3:+38622689 | None:intergenic |
| GGATTGGGTTTCGAGGAGCC+AGG | 0.529516 | 7.3:+38622623 | None:intergenic |
| GTCGACGTGAGAAGGGGACC+AGG | 0.552546 | 7.3:+38622647 | None:intergenic |
| GAGAAGGGGACCAGGTGAGG+AGG | 0.554583 | 7.3:+38622655 | None:intergenic |
| TCATCGGCCTCGACATCGAA+TGG | 0.559761 | 7.3:-38622587 | MS.gene84632:CDS |
| AGAGCTGGAGAGTGGCGGCT+GGG | 0.559909 | 7.3:+38622535 | None:intergenic |
| ATCTGTTGTTAGGGTTAGAG+AGG | 0.563682 | 7.3:+38622442 | None:intergenic |
| TTTACGAAACCTTGCTGCTG+AGG | 0.563801 | 7.3:-38622343 | MS.gene84632:CDS |
| GATGGTGAAGGTGGTGTCGA+TGG | 0.566837 | 7.3:+38622683 | None:intergenic |
| CCAGGTGAGGAGGGTTTGGA+TGG | 0.567563 | 7.3:+38622665 | None:intergenic |
| TCGATGAGGGTGATGTTGAA+GGG | 0.568102 | 7.3:+38622747 | None:intergenic |
| AACCCTAACAACAGATTCGT+CGG | 0.574849 | 7.3:-38622435 | MS.gene84632:CDS |
| GGTGTCGATGGTGATGGAGT+AGG | 0.574890 | 7.3:+38622695 | None:intergenic |
| TGTCGAGGCCGATGATTGCG+GGG | 0.579688 | 7.3:+38622595 | None:intergenic |
| TGGTGATGGAGTAGGTGTTG+TGG | 0.580668 | 7.3:+38622703 | None:intergenic |
| AGGTGTTGTGGGTGTCGTAG+GGG | 0.584862 | 7.3:+38622715 | None:intergenic |
| GGAGTAGGTGGGATAATCCA+TGG | 0.588148 | 7.3:-38622227 | MS.gene84632:CDS |
| ACCTGATCCCAATCAAGCCA+TGG | 0.590317 | 7.3:+38622210 | None:intergenic |
| AGAAGGGGACCAGGTGAGGA+GGG | 0.593387 | 7.3:+38622656 | None:intergenic |
| CGTGAGAAGGGGACCAGGTG+AGG | 0.595883 | 7.3:+38622652 | None:intergenic |
| TGTTGTGGGTGTCGTAGGGG+AGG | 0.597459 | 7.3:+38622718 | None:intergenic |
| GAGGAGGGTTTGGATGGTGA+AGG | 0.599653 | 7.3:+38622671 | None:intergenic |
| CGTCGAGGATTACGAGGAGT+AGG | 0.600894 | 7.3:-38622242 | MS.gene84632:CDS |
| GATCGTGATTTGTTGAGAAG+TGG | 0.602959 | 7.3:-38622312 | MS.gene84632:CDS |
| CCAGGTGTCGACGTGAGAAG+GGG | 0.603024 | 7.3:+38622641 | None:intergenic |
| GATGTCGAGGCCGATGATTG+CGG | 0.603787 | 7.3:+38622593 | None:intergenic |
| AGGGGAGGTAGTTGTCGATG+AGG | 0.611336 | 7.3:+38622733 | None:intergenic |
| GGGGAGGTAGTTGTCGATGA+GGG | 0.612787 | 7.3:+38622734 | None:intergenic |
| TTGGACGCCATTCGATGTCG+AGG | 0.616614 | 7.3:+38622580 | None:intergenic |
| GTTTGTGCAGAGCTGGAGAG+TGG | 0.617217 | 7.3:+38622527 | None:intergenic |
| CCTCAAGCACCTCAGCAGCA+AGG | 0.632236 | 7.3:+38622334 | None:intergenic |
| AAGTGGGATTAAGACATTAG+CGG | 0.633283 | 7.3:-38622295 | MS.gene84632:CDS |
| GAGGATTACGAGGAGTAGGT+GGG | 0.636481 | 7.3:-38622238 | MS.gene84632:CDS |
| TGTGCAGAGCTGGAGAGTGG+CGG | 0.640933 | 7.3:+38622530 | None:intergenic |
| AAGACGCCGAGCAATCTCAA+AGG | 0.644844 | 7.3:+38622158 | None:intergenic |
| AGAAACCGTCGAGGATTACG+AGG | 0.646063 | 7.3:-38622248 | MS.gene84632:CDS |
| TAAATCAACATAATTCGCAA+CGG | 0.646753 | 7.3:+38622362 | None:intergenic |
| CTACTCCTCGTAATCCTCGA+CGG | 0.648400 | 7.3:+38622243 | None:intergenic |
| TGAGATGGAAGATAAGGCAG+CGG | 0.659112 | 7.3:+38622502 | None:intergenic |
| CAACATAATTCGCAACGGTG+AGG | 0.669910 | 7.3:+38622367 | None:intergenic |
| GTCGAGGCCGATGATTGCGG+GGG | 0.672413 | 7.3:+38622596 | None:intergenic |
| AGATTGTTGAGAAACCGTCG+AGG | 0.740766 | 7.3:-38622257 | MS.gene84632:CDS |
| TGGCGTCCAAACTCCCAACG+CGG | 0.767636 | 7.3:-38622567 | MS.gene84632:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TAAATCAACATAATTCGCAA+CGG | + | chr7.3:38622597-38622616 | None:intergenic | 25.0% |
| AAGTGGGATTAAGACATTAG+CGG | - | chr7.3:38622661-38622680 | MS.gene84632:CDS | 35.0% | |
| TTCTATAAGCTTCTCGATGT+CGG | + | chr7.3:38622561-38622580 | None:intergenic | 35.0% | |
| !! | ATCGTGATTTGTTGAGAAGT+GGG | - | chr7.3:38622645-38622664 | MS.gene84632:CDS | 35.0% |
| !! | TTCTTTCCTTTGAGATTGCT+CGG | - | chr7.3:38622792-38622811 | MS.gene84632:CDS | 35.0% |
| AACCCTAACAACAGATTCGT+CGG | - | chr7.3:38622521-38622540 | MS.gene84632:CDS | 40.0% | |
| AGTGGATGAGATGGAAGATA+AGG | + | chr7.3:38622463-38622482 | None:intergenic | 40.0% | |
| ATCTGTTGTTAGGGTTAGAG+AGG | + | chr7.3:38622517-38622536 | None:intergenic | 40.0% | |
| GGATAATCCATGGCTTGATT+GGG | - | chr7.3:38622739-38622758 | MS.gene84632:CDS | 40.0% | |
| ! | TTTTGGTCAACGAGGGTAAT+CGG | + | chr7.3:38622140-38622159 | None:intergenic | 40.0% |
| !! | GATCGTGATTTGTTGAGAAG+TGG | - | chr7.3:38622644-38622663 | MS.gene84632:CDS | 40.0% |
| ACATTAGCGGAACGTGTTCT+TGG | - | chr7.3:38622674-38622693 | MS.gene84632:CDS | 45.0% | |
| AGATTGTTGAGAAACCGTCG+AGG | - | chr7.3:38622699-38622718 | MS.gene84632:CDS | 45.0% | |
| CAACATAATTCGCAACGGTG+AGG | + | chr7.3:38622592-38622611 | None:intergenic | 45.0% | |
| CATTAGCGGAACGTGTTCTT+GGG | - | chr7.3:38622675-38622694 | MS.gene84632:CDS | 45.0% | |
| GGGATAATCCATGGCTTGAT+TGG | - | chr7.3:38622738-38622757 | MS.gene84632:CDS | 45.0% | |
| GTTAGAGAGGAAGGTGAAGA+GGG | + | chr7.3:38622504-38622523 | None:intergenic | 45.0% | |
| GTTGTTAGGGTTAGAGAGGA+AGG | + | chr7.3:38622513-38622532 | None:intergenic | 45.0% | |
| TCGATGAGGGTGATGTTGAA+GGG | + | chr7.3:38622212-38622231 | None:intergenic | 45.0% | |
| TCGGCGTCTTTATTCTCATC+AGG | - | chr7.3:38622811-38622830 | MS.gene84632:CDS | 45.0% | |
| TGAGATGGAAGATAAGGCAG+CGG | + | chr7.3:38622457-38622476 | None:intergenic | 45.0% | |
| TTTACGAAACCTTGCTGCTG+AGG | - | chr7.3:38622613-38622632 | MS.gene84632:CDS | 45.0% | |
| !!! | TGTGTCGTTTTGGTCAACGA+GGG | + | chr7.3:38622147-38622166 | None:intergenic | 45.0% |
| AACAACAGATTCGTCGGCGT+CGG | - | chr7.3:38622527-38622546 | MS.gene84632:CDS | 50.0% | |
| AAGACGCCGAGCAATCTCAA+AGG | + | chr7.3:38622801-38622820 | None:intergenic | 50.0% | |
| ACCTGATCCCAATCAAGCCA+TGG | + | chr7.3:38622749-38622768 | None:intergenic | 50.0% | |
| ACGCCGACGAATCTGTTGTT+AGG | + | chr7.3:38622527-38622546 | None:intergenic | 50.0% | |
| AGAAACCGTCGAGGATTACG+AGG | - | chr7.3:38622708-38622727 | MS.gene84632:CDS | 50.0% | |
| AGGAAGGTGAAGAGGGAAGT+GGG | + | chr7.3:38622497-38622516 | None:intergenic | 50.0% | |
| CGCCGACGAATCTGTTGTTA+GGG | + | chr7.3:38622526-38622545 | None:intergenic | 50.0% | |
| CTACTCCTCGTAATCCTCGA+CGG | + | chr7.3:38622716-38622735 | None:intergenic | 50.0% | |
| GAGGATTACGAGGAGTAGGT+GGG | - | chr7.3:38622718-38622737 | MS.gene84632:CDS | 50.0% | |
| GGAGTAGGTGGGATAATCCA+TGG | - | chr7.3:38622729-38622748 | MS.gene84632:CDS | 50.0% | |
| GGTTAGAGAGGAAGGTGAAG+AGG | + | chr7.3:38622505-38622524 | None:intergenic | 50.0% | |
| GTCGATGAGGGTGATGTTGA+AGG | + | chr7.3:38622213-38622232 | None:intergenic | 50.0% | |
| TCCATGGCTTGATTGGGATC+AGG | - | chr7.3:38622745-38622764 | MS.gene84632:CDS | 50.0% | |
| TGTTGGTGTGGAGTTTGGGT+TGG | + | chr7.3:38622189-38622208 | None:intergenic | 50.0% | |
| ! | AGGGTGATGTTGAAGGGTGT+TGG | + | chr7.3:38622206-38622225 | None:intergenic | 50.0% |
| ! | GTTGGTGTGGAGTTTGGGTT+GGG | + | chr7.3:38622188-38622207 | None:intergenic | 50.0% |
| ! | TAGGTGTTGTGGGTGTCGTA+GGG | + | chr7.3:38622245-38622264 | None:intergenic | 50.0% |
| ! | TTGGGGATTGGCATGGAGAT+GGG | + | chr7.3:38622170-38622189 | None:intergenic | 50.0% |
| !! | AAGGGTGTTGGTGTGGAGTT+TGG | + | chr7.3:38622194-38622213 | None:intergenic | 50.0% |
| !! | AGGGTGTTGGTGTGGAGTTT+GGG | + | chr7.3:38622193-38622212 | None:intergenic | 50.0% |
| !! | GATGTTGAAGGGTGTTGGTG+TGG | + | chr7.3:38622201-38622220 | None:intergenic | 50.0% |
| !! | GGTGATGGAGTAGGTGTTGT+GGG | + | chr7.3:38622255-38622274 | None:intergenic | 50.0% |
| !! | TGGTGATGGAGTAGGTGTTG+TGG | + | chr7.3:38622256-38622275 | None:intergenic | 50.0% |
| !! | TTGGTGTGGAGTTTGGGTTG+GGG | + | chr7.3:38622187-38622206 | None:intergenic | 50.0% |
| !!! | GTGTGTCGTTTTGGTCAACG+AGG | + | chr7.3:38622148-38622167 | None:intergenic | 50.0% |
| !!! | TGGAGATGGGTGTGTCGTTT+TGG | + | chr7.3:38622157-38622176 | None:intergenic | 50.0% |
| AAGAGGGAAGTGGGGATGGA+GGG | + | chr7.3:38622488-38622507 | None:intergenic | 55.0% | |
| AGCGGTTGTTTGTGCAGAGC+TGG | + | chr7.3:38622439-38622458 | None:intergenic | 55.0% | |
| AGGGGAGGTAGTTGTCGATG+AGG | + | chr7.3:38622226-38622245 | None:intergenic | 55.0% | |
| ATGTCGAGGCCGATGATTGC+GGG | + | chr7.3:38622365-38622384 | None:intergenic | 55.0% | |
| CGAGGATTACGAGGAGTAGG+TGG | - | chr7.3:38622717-38622736 | MS.gene84632:CDS | 55.0% | |
| CGTCGAGGATTACGAGGAGT+AGG | - | chr7.3:38622714-38622733 | MS.gene84632:CDS | 55.0% | |
| GAGGAAGGTGAAGAGGGAAG+TGG | + | chr7.3:38622498-38622517 | None:intergenic | 55.0% | |
| GAGGAGGGTTTGGATGGTGA+AGG | + | chr7.3:38622288-38622307 | None:intergenic | 55.0% | |
| GAGGGTTTGGATGGTGAAGG+TGG | + | chr7.3:38622285-38622304 | None:intergenic | 55.0% | |
| GATGTCGAGGCCGATGATTG+CGG | + | chr7.3:38622366-38622385 | None:intergenic | 55.0% | |
| GGAAGGTGAAGAGGGAAGTG+GGG | + | chr7.3:38622496-38622515 | None:intergenic | 55.0% | |
| GGGGAGGTAGTTGTCGATGA+GGG | + | chr7.3:38622225-38622244 | None:intergenic | 55.0% | |
| GTTTGTGCAGAGCTGGAGAG+TGG | + | chr7.3:38622432-38622451 | None:intergenic | 55.0% | |
| TCATCGGCCTCGACATCGAA+TGG | - | chr7.3:38622369-38622388 | MS.gene84632:CDS | 55.0% | |
| TGGAGGGAGAGTGGATGAGA+TGG | + | chr7.3:38622472-38622491 | None:intergenic | 55.0% | |
| TTGGACGCCATTCGATGTCG+AGG | + | chr7.3:38622379-38622398 | None:intergenic | 55.0% | |
| ! | AGGTGTTGTGGGTGTCGTAG+GGG | + | chr7.3:38622244-38622263 | None:intergenic | 55.0% |
| ! | GATGGTGAAGGTGGTGTCGA+TGG | + | chr7.3:38622276-38622295 | None:intergenic | 55.0% |
| ! | GTAGGTGTTGTGGGTGTCGT+AGG | + | chr7.3:38622246-38622265 | None:intergenic | 55.0% |
| ! | GTTGGGGATTGGCATGGAGA+TGG | + | chr7.3:38622171-38622190 | None:intergenic | 55.0% |
| !! | GAAGGTGGTGTCGATGGTGA+TGG | + | chr7.3:38622270-38622289 | None:intergenic | 55.0% |
| !! | GGTGTCGATGGTGATGGAGT+AGG | + | chr7.3:38622264-38622283 | None:intergenic | 55.0% |
| !! | GTGGAGTTTGGGTTGGGGAT+TGG | + | chr7.3:38622182-38622201 | None:intergenic | 55.0% |
| !! | GTTTGGGTTGGGGATTGGCA+TGG | + | chr7.3:38622177-38622196 | None:intergenic | 55.0% |
| AAGTGGGGATGGAGGGAGAG+TGG | + | chr7.3:38622481-38622500 | None:intergenic | 60.0% | |
| AGAAGGGGACCAGGTGAGGA+GGG | + | chr7.3:38622303-38622322 | None:intergenic | 60.0% | |
| CCAGGTGAGGAGGGTTTGGA+TGG | + | chr7.3:38622294-38622313 | None:intergenic | 60.0% | |
| CCATCCAAACCCTCCTCACC+TGG | - | chr7.3:38622291-38622310 | MS.gene84632:CDS | 60.0% | |
| CCTCAAGCACCTCAGCAGCA+AGG | + | chr7.3:38622625-38622644 | None:intergenic | 60.0% | |
| GAAGAGGGAAGTGGGGATGG+AGG | + | chr7.3:38622489-38622508 | None:intergenic | 60.0% | |
| GATTGCGGGGGAGAGGGATT+GGG | + | chr7.3:38622351-38622370 | None:intergenic | 60.0% | |
| GGATTGGGTTTCGAGGAGCC+AGG | + | chr7.3:38622336-38622355 | None:intergenic | 60.0% | |
| GGGAGAGGGATTGGGTTTCG+AGG | + | chr7.3:38622343-38622362 | None:intergenic | 60.0% | |
| GGTGAAGAGGGAAGTGGGGA+TGG | + | chr7.3:38622492-38622511 | None:intergenic | 60.0% | |
| TCCCTCTCCCCCGCAATCAT+CGG | - | chr7.3:38622353-38622372 | MS.gene84632:CDS | 60.0% | |
| TGATTGCGGGGGAGAGGGAT+TGG | + | chr7.3:38622352-38622371 | None:intergenic | 60.0% | |
| TGGCGTCCAAACTCCCAACG+CGG | - | chr7.3:38622389-38622408 | MS.gene84632:CDS | 60.0% | |
| TGGGTTATCCTGGCCGCGTT+GGG | + | chr7.3:38622405-38622424 | None:intergenic | 60.0% | |
| TGTCGAGGCCGATGATTGCG+GGG | + | chr7.3:38622364-38622383 | None:intergenic | 60.0% | |
| TGTGCAGAGCTGGAGAGTGG+CGG | + | chr7.3:38622429-38622448 | None:intergenic | 60.0% | |
| ! | CCTTGCTGCTGAGGTGCTTG+AGG | - | chr7.3:38622622-38622641 | MS.gene84632:CDS | 60.0% |
| ! | TGTTGTGGGTGTCGTAGGGG+AGG | + | chr7.3:38622241-38622260 | None:intergenic | 60.0% |
| !! | AGCCAGGTGTCGACGTGAGA+AGG | + | chr7.3:38622320-38622339 | None:intergenic | 60.0% |
| !! | CCAGGTGTCGACGTGAGAAG+GGG | + | chr7.3:38622318-38622337 | None:intergenic | 60.0% |
| !! | GCCAGGTGTCGACGTGAGAA+GGG | + | chr7.3:38622319-38622338 | None:intergenic | 60.0% |
| AGAGCTGGAGAGTGGCGGCT+GGG | + | chr7.3:38622424-38622443 | None:intergenic | 65.0% | |
| CCCCTTCTCACGTCGACACC+TGG | - | chr7.3:38622315-38622334 | MS.gene84632:CDS | 65.0% | |
| CGTGAGAAGGGGACCAGGTG+AGG | + | chr7.3:38622307-38622326 | None:intergenic | 65.0% | |
| CTGGGTTATCCTGGCCGCGT+TGG | + | chr7.3:38622406-38622425 | None:intergenic | 65.0% | |
| GAGAAGGGGACCAGGTGAGG+AGG | + | chr7.3:38622304-38622323 | None:intergenic | 65.0% | |
| GAGTGGCGGCTGGGTTATCC+TGG | + | chr7.3:38622415-38622434 | None:intergenic | 65.0% | |
| GCCGATGATTGCGGGGGAGA+GGG | + | chr7.3:38622357-38622376 | None:intergenic | 65.0% | |
| GGGACCAGGTGAGGAGGGTT+TGG | + | chr7.3:38622298-38622317 | None:intergenic | 65.0% | |
| GTCGACGTGAGAAGGGGACC+AGG | + | chr7.3:38622312-38622331 | None:intergenic | 65.0% | |
| GTCGAGGCCGATGATTGCGG+GGG | + | chr7.3:38622363-38622382 | None:intergenic | 65.0% | |
| TCCAAACTCCCAACGCGGCC+AGG | - | chr7.3:38622394-38622413 | MS.gene84632:CDS | 65.0% | |
| TCCTGGCCGCGTTGGGAGTT+TGG | + | chr7.3:38622398-38622417 | None:intergenic | 65.0% | |
| CAGAGCTGGAGAGTGGCGGC+TGG | + | chr7.3:38622425-38622444 | None:intergenic | 70.0% | |
| GGCCGATGATTGCGGGGGAG+AGG | + | chr7.3:38622358-38622377 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 38622134 | 38622844 | 38622134 | ID=MS.gene84632 |
| chr7.3 | mRNA | 38622134 | 38622844 | 38622134 | ID=MS.gene84632.t1;Parent=MS.gene84632 |
| chr7.3 | exon | 38622134 | 38622844 | 38622134 | ID=MS.gene84632.t1.exon1;Parent=MS.gene84632.t1 |
| chr7.3 | CDS | 38622134 | 38622844 | 38622134 | ID=cds.MS.gene84632.t1;Parent=MS.gene84632.t1 |
| Gene Sequence |
| Protein sequence |
