Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84719.t1 | XP_003627492.2 | 98 | 404 | 8 | 0 | 1 | 404 | 89 | 492 | 3.50E-226 | 793.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84719.t1 | Q8GYY5 | 60.2 | 410 | 114 | 9 | 2 | 404 | 80 | 447 | 3.2e-119 | 429.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84719.t1 | G7L9Z1 | 98.0 | 404 | 8 | 0 | 1 | 404 | 89 | 492 | 2.5e-226 | 793.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051388 | MS.gene84719 | 0.827175 | 1.81E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene84719 | 0.810619 | 1.05E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene84719 | 0.807445 | 5.04E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene84719 | 0.816076 | 6.66E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene84719 | 0.837617 | 4.68E-57 | -1.69E-46 |
| MS.gene060505 | MS.gene84719 | 0.824134 | 9.51E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84719.t1 | MTR_8g026680 | 98.020 | 404 | 8 | 0 | 1 | 404 | 89 | 492 | 0.0 | 828 |
| MS.gene84719.t1 | MTR_7g104900 | 71.937 | 253 | 70 | 1 | 1 | 252 | 76 | 328 | 1.26e-135 | 397 |
| MS.gene84719.t1 | MTR_1g089500 | 68.000 | 275 | 81 | 2 | 4 | 271 | 44 | 318 | 8.17e-135 | 395 |
| MS.gene84719.t1 | MTR_2g086580 | 53.418 | 395 | 165 | 7 | 16 | 403 | 68 | 450 | 2.68e-129 | 380 |
| MS.gene84719.t1 | MTR_4g052850 | 63.345 | 281 | 88 | 3 | 4 | 283 | 78 | 344 | 1.20e-126 | 370 |
| MS.gene84719.t1 | MTR_7g107560 | 70.817 | 257 | 69 | 2 | 1 | 251 | 34 | 290 | 9.90e-123 | 362 |
| MS.gene84719.t1 | MTR_7g081615 | 65.000 | 160 | 54 | 1 | 60 | 219 | 14 | 171 | 7.81e-72 | 223 |
| MS.gene84719.t1 | MTR_5g064420 | 60.694 | 173 | 58 | 2 | 41 | 213 | 33 | 195 | 2.26e-67 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84719.t1 | AT2G46710 | 60.584 | 411 | 111 | 10 | 2 | 404 | 80 | 447 | 1.98e-155 | 446 |
| MS.gene84719.t1 | AT5G22400 | 72.222 | 252 | 70 | 0 | 1 | 252 | 95 | 346 | 5.76e-135 | 395 |
| MS.gene84719.t1 | AT3G11490 | 65.505 | 287 | 93 | 1 | 1 | 281 | 71 | 357 | 3.65e-134 | 392 |
| MS.gene84719.t1 | AT4G03100 | 69.962 | 263 | 67 | 2 | 1 | 251 | 46 | 308 | 2.92e-133 | 389 |
| MS.gene84719.t1 | AT1G08340 | 70.130 | 231 | 69 | 0 | 21 | 251 | 1 | 231 | 7.09e-122 | 357 |
Find 83 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTATCCGGCTTGATTA+AGG | 0.253081 | 8.3:+67613967 | MS.gene84719:CDS |
| AAAGGACCACTTTCGTATCT+TGG | 0.283881 | 8.3:-67615493 | None:intergenic |
| TGATGCAGTGTGAAGGTATT+TGG | 0.306995 | 8.3:+67613637 | MS.gene84719:intron |
| TTTACAATGGCAAGACTTGC+AGG | 0.317689 | 8.3:-67615634 | None:intergenic |
| GATCTCGAACGAATGCTTCT+TGG | 0.347459 | 8.3:-67613904 | None:intergenic |
| GTGTTCCAACAATTCTTCTA+AGG | 0.355399 | 8.3:+67613707 | MS.gene84719:CDS |
| ATCGATGTTCATTGTTTATC+CGG | 0.358798 | 8.3:+67613956 | MS.gene84719:CDS |
| TGCATCCTTAGAAGAATTGT+TGG | 0.370772 | 8.3:-67613712 | None:intergenic |
| AGACTTGCAGGCTTCTTAGA+TGG | 0.380145 | 8.3:-67615622 | None:intergenic |
| GAGGGAAGATGTTTCTTCCT+TGG | 0.381917 | 8.3:+67612492 | MS.gene84719:CDS |
| TGACTGGGCAATCAATTTGA+TGG | 0.385583 | 8.3:+67614641 | MS.gene84719:CDS |
| CAGAAGCTGCTCTTCTTGAC+TGG | 0.401025 | 8.3:+67614625 | MS.gene84719:CDS |
| TGCATGAATCAATGCAGTTA+AGG | 0.415964 | 8.3:-67615143 | None:intergenic |
| GCATGAATCAATGCAGTTAA+GGG | 0.418194 | 8.3:-67615142 | None:intergenic |
| AGGAGGAAATTCATCATTGC+AGG | 0.421427 | 8.3:-67615272 | None:intergenic |
| TTTCTTCCTTGGATATTAGC+TGG | 0.437424 | 8.3:+67612503 | MS.gene84719:CDS |
| GGCTTGCTCAATTGAAATAC+CGG | 0.440128 | 8.3:-67615601 | None:intergenic |
| TCCTCTTTGTTGAAGTTGAA+AGG | 0.462988 | 8.3:-67615292 | None:intergenic |
| TGGTTTAGAGAGCTTCCAAC+TGG | 0.465706 | 8.3:+67614516 | MS.gene84719:CDS |
| CTGGCACTAGGTACCCTTGT+AGG | 0.471703 | 8.3:-67612613 | None:intergenic |
| CAGTGTTCTTATGATGATAG+AGG | 0.479488 | 8.3:+67613679 | MS.gene84719:CDS |
| TTCGAGATCAGTTAAACAAA+GGG | 0.480003 | 8.3:+67613918 | MS.gene84719:CDS |
| GGAAGGAAGAGGAGAAGCTT+GGG | 0.485623 | 8.3:+67615663 | MS.gene84719:CDS |
| GCTCCATTCTATTCTTCCTA+AGG | 0.486204 | 8.3:-67615392 | None:intergenic |
| GGGAAGGAAGAGGAGAAGCT+TGG | 0.491896 | 8.3:+67615662 | MS.gene84719:CDS |
| GTCAAGAAGAGCAGCTTCTG+TGG | 0.495179 | 8.3:-67614622 | None:intergenic |
| ACGGCGTGCGCAAGTTATGC+AGG | 0.495303 | 8.3:+67615575 | MS.gene84719:CDS |
| GCCTTCTGAGTTTCAGCCTG+AGG | 0.495415 | 8.3:+67612588 | MS.gene84719:CDS |
| TTCTCAAGGACTTCCACCTT+AGG | 0.495514 | 8.3:+67615376 | MS.gene84719:CDS |
| GAATGCGCGCAACGTAGCTA+TGG | 0.499082 | 8.3:+67614698 | MS.gene84719:CDS |
| GTCTTGCCATTGTAAATACT+AGG | 0.506258 | 8.3:+67615641 | MS.gene84719:CDS |
| TCCTTTCAACTTCAACAAAG+AGG | 0.511319 | 8.3:+67615291 | MS.gene84719:CDS |
| GGTACCCTTGTAGGAACCTC+AGG | 0.515998 | 8.3:-67612604 | None:intergenic |
| TAACAAACCTGTGTCATGTT+GGG | 0.519362 | 8.3:-67614729 | None:intergenic |
| CGTAAATACCTTAATCAAGC+CGG | 0.519512 | 8.3:-67613975 | None:intergenic |
| GTTCGAGATCAGTTAAACAA+AGG | 0.524433 | 8.3:+67613917 | MS.gene84719:CDS |
| CCACCTTAGGAAGAATAGAA+TGG | 0.525280 | 8.3:+67615389 | MS.gene84719:CDS |
| TTGCATTGCATCACTTGCTC+CGG | 0.531461 | 8.3:-67614558 | None:intergenic |
| AGAAGAGCAGCTTCTGTGGA+AGG | 0.535601 | 8.3:-67614618 | None:intergenic |
| CAAAAGCAATTGTATTCTGA+AGG | 0.538997 | 8.3:+67613733 | MS.gene84719:CDS |
| TGTAACTTGCAGTGTGGAGA+GGG | 0.539058 | 8.3:+67612474 | MS.gene84719:CDS |
| CTACAAGGGTACCTAGTGCC+AGG | 0.543064 | 8.3:+67612614 | MS.gene84719:CDS |
| CCATTCTATTCTTCCTAAGG+TGG | 0.545441 | 8.3:-67615389 | None:intergenic |
| TTCAGCCTGAGGTTCCTACA+AGG | 0.552164 | 8.3:+67612599 | MS.gene84719:CDS |
| GCCATTGTAAATACTAGGGA+AGG | 0.559174 | 8.3:+67615646 | MS.gene84719:CDS |
| GCGCAAGTTATGCAGGCACC+CGG | 0.570203 | 8.3:+67615582 | MS.gene84719:CDS |
| GAAGATATGACAGCGAACAT+TGG | 0.571920 | 8.3:+67615539 | MS.gene84719:CDS |
| GTCACCATGTGAACAAATTG+AGG | 0.575603 | 8.3:+67615315 | MS.gene84719:CDS |
| TCTTGCCATTGTAAATACTA+GGG | 0.575822 | 8.3:+67615642 | MS.gene84719:CDS |
| AGAAGCTGCTCTTCTTGACT+GGG | 0.576970 | 8.3:+67614626 | MS.gene84719:CDS |
| GCATCCTCAATTTGTTCACA+TGG | 0.578905 | 8.3:-67615319 | None:intergenic |
| CATTGGTCACGATTGAGAAA+CGG | 0.582047 | 8.3:+67615556 | MS.gene84719:CDS |
| ACCTCAGGCTGAAACTCAGA+AGG | 0.584588 | 8.3:-67612589 | None:intergenic |
| AATGGAGCGTAGAGAAACTT+CGG | 0.589113 | 8.3:+67615407 | MS.gene84719:CDS |
| GTAAATACTAGGGAAGGAAG+AGG | 0.593283 | 8.3:+67615652 | MS.gene84719:CDS |
| GACACGTGTCTCACTTCGGT+TGG | 0.596127 | 8.3:-67612526 | None:intergenic |
| AGAGAATCAAGTACACCAGT+TGG | 0.600276 | 8.3:-67614531 | None:intergenic |
| CTACCAAAAGAAAATTCTCA+AGG | 0.605610 | 8.3:+67615362 | MS.gene84719:CDS |
| TTGTAACTTGCAGTGTGGAG+AGG | 0.609827 | 8.3:+67612473 | MS.gene84719:CDS |
| TCTTTGTTGAAGTTGAAAGG+AGG | 0.610113 | 8.3:-67615289 | None:intergenic |
| AGTTGGAAGCTCTCTAAACC+AGG | 0.611737 | 8.3:-67614514 | None:intergenic |
| TTTCGCGCCCAACATGACAC+AGG | 0.615447 | 8.3:+67614722 | MS.gene84719:CDS |
| TCCTTCCCTAGTATTTACAA+TGG | 0.616815 | 8.3:-67615647 | None:intergenic |
| GGCTATTCTCAGCAGTAATG+CGG | 0.618302 | 8.3:-67613883 | None:intergenic |
| AGTGTTCTTATGATGATAGA+GGG | 0.624124 | 8.3:+67613680 | MS.gene84719:CDS |
| ATGTGACACGTGTCTCACTT+CGG | 0.625234 | 8.3:-67612530 | None:intergenic |
| CATGAATCAATGCAGTTAAG+GGG | 0.629505 | 8.3:-67615141 | None:intergenic |
| AAGATTGCTCTCACATAGCA+TGG | 0.632661 | 8.3:+67615240 | MS.gene84719:CDS |
| GGTTGGCCAGCTAATATCCA+AGG | 0.633161 | 8.3:-67612509 | None:intergenic |
| TCAGCCTGAGGTTCCTACAA+GGG | 0.635145 | 8.3:+67612600 | MS.gene84719:CDS |
| CTTTAAATGATGCAGTGTGA+AGG | 0.637209 | 8.3:+67613630 | MS.gene84719:intron |
| AGGAAATTCATCATTGCAGG+AGG | 0.637863 | 8.3:-67615269 | None:intergenic |
| TTTCCATGGATGAAGGCAGA+AGG | 0.638432 | 8.3:+67613854 | MS.gene84719:intron |
| AACAAAGGGATAGTGCCACA+TGG | 0.638676 | 8.3:+67613932 | MS.gene84719:CDS |
| AAGCAATTGTATTCTGAAGG+AGG | 0.641065 | 8.3:+67613736 | MS.gene84719:CDS |
| ATCTATTGTAACTTGCAGTG+TGG | 0.646977 | 8.3:+67612468 | MS.gene84719:CDS |
| GCTTGCTCAATTGAAATACC+GGG | 0.650080 | 8.3:-67615600 | None:intergenic |
| TGGAAGGAAGTAACTTGACA+AGG | 0.651985 | 8.3:-67614602 | None:intergenic |
| TTAACAAACCTGTGTCATGT+TGG | 0.658298 | 8.3:-67614730 | None:intergenic |
| AGAGAAACTTCGGAGCTCCG+AGG | 0.659373 | 8.3:+67615417 | MS.gene84719:CDS |
| GTAACTCCAAGATACGAAAG+TGG | 0.671137 | 8.3:+67615487 | MS.gene84719:CDS |
| TGTACTTGATTCTCTCACAC+CGG | 0.686660 | 8.3:+67614539 | MS.gene84719:CDS |
| CAATGAACATCGATTCCATG+TGG | 0.724200 | 8.3:-67613947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATGAAATTTATGTAATT+TGG | + | chr8.3:67612666-67612685 | MS.gene84719:intron | 15.0% |
| !! | ATAGATATAAAAAATTTACC+TGG | - | chr8.3:67612635-67612654 | None:intergenic | 15.0% |
| !! | TTATTGTACTTACAATAAAA+TGG | + | chr8.3:67613215-67613234 | MS.gene84719:intron | 15.0% |
| !!! | TAACTATAACTATTTTCTAA+AGG | - | chr8.3:67615514-67615533 | None:intergenic | 15.0% |
| !!! | TCAATTTTGTTTAGAATTTT+TGG | + | chr8.3:67612784-67612803 | MS.gene84719:intron | 15.0% |
| !!! | TTTTTATCATTATCTATTTC+AGG | + | chr8.3:67614491-67614510 | MS.gene84719:intron | 15.0% |
| !! | AAAATACAGATAATCAATCA+AGG | - | chr8.3:67613571-67613590 | None:intergenic | 20.0% |
| !! | AAACACTAAGTTTGATTAAT+AGG | + | chr8.3:67614212-67614231 | MS.gene84719:intron | 20.0% |
| !! | AAATTACAGAACATACTTTA+AGG | - | chr8.3:67613762-67613781 | None:intergenic | 20.0% |
| !! | AATGATAAAAAGATATGACA+AGG | - | chr8.3:67614482-67614501 | None:intergenic | 20.0% |
| !! | ATTGTAAGTACAATAAACTA+TGG | - | chr8.3:67613211-67613230 | None:intergenic | 20.0% |
| !! | CATACTTTATCTAATTTCAA+GGG | - | chr8.3:67613085-67613104 | None:intergenic | 20.0% |
| !! | CATCTAAATTTCATATTTCA+TGG | + | chr8.3:67614880-67614899 | MS.gene84719:intron | 20.0% |
| !! | GGTTGAAATATAAAAAGATA+CGG | - | chr8.3:67614328-67614347 | None:intergenic | 20.0% |
| !! | TCATACTTTATCTAATTTCA+AGG | - | chr8.3:67613086-67613105 | None:intergenic | 20.0% |
| !!! | AAAAGCCTAAAATTTTCTTA+AGG | - | chr8.3:67613116-67613135 | None:intergenic | 20.0% |
| !!! | AAAGCCTAAAATTTTCTTAA+GGG | - | chr8.3:67613115-67613134 | None:intergenic | 20.0% |
| !!! | ATAGTTACATGTGAATTTTA+AGG | + | chr8.3:67613818-67613837 | MS.gene84719:intron | 20.0% |
| !!! | GTCAATGTTTTTAGTATAAT+TGG | + | chr8.3:67612823-67612842 | MS.gene84719:intron | 20.0% |
| !!! | GTTTTAAAGAAAGTAAGAAA+CGG | - | chr8.3:67614787-67614806 | None:intergenic | 20.0% |
| !!! | TATCTTTTTATATTTCAACC+TGG | + | chr8.3:67614328-67614347 | MS.gene84719:intron | 20.0% |
| !!! | TGTATTTTTCATTTCACTTT+TGG | - | chr8.3:67615080-67615099 | None:intergenic | 20.0% |
| !!! | TTCAGTCAAATGAATTTTAT+AGG | - | chr8.3:67614005-67614024 | None:intergenic | 20.0% |
| ! | ACTAAGTTTGATTAATAGGA+AGG | + | chr8.3:67614216-67614235 | MS.gene84719:intron | 25.0% |
| ! | ATAAACTATGGTAGATTCAT+AGG | - | chr8.3:67613199-67613218 | None:intergenic | 25.0% |
| ! | CTCATAATTTACTGATAAGT+GGG | + | chr8.3:67614129-67614148 | MS.gene84719:intron | 25.0% |
| ! | CTTACAATAAAATGGTAGAA+TGG | + | chr8.3:67613223-67613242 | MS.gene84719:intron | 25.0% |
| ! | GATATATTGTACAATTAGCA+TGG | + | chr8.3:67614947-67614966 | MS.gene84719:intron | 25.0% |
| ! | GCTAATTGTACAATATATCA+GGG | - | chr8.3:67614946-67614965 | None:intergenic | 25.0% |
| ! | TAAATCCTGACTATTATGTA+TGG | + | chr8.3:67613376-67613395 | MS.gene84719:intron | 25.0% |
| ! | TAATAAGCTGAAAAATTCGA+TGG | + | chr8.3:67614985-67615004 | MS.gene84719:intron | 25.0% |
| ! | TCGTATTTGTCAAATTCATT+TGG | + | chr8.3:67613788-67613807 | MS.gene84719:intron | 25.0% |
| ! | TGCAAACTCAGATAATAAAT+TGG | - | chr8.3:67614862-67614881 | None:intergenic | 25.0% |
| ! | TGCTAATTGTACAATATATC+AGG | - | chr8.3:67614947-67614966 | None:intergenic | 25.0% |
| !! | AAGCCTAAAATTTTCTTAAG+GGG | - | chr8.3:67613114-67613133 | None:intergenic | 25.0% |
| !! | ATTCCCCTTAAGAAAATTTT+AGG | + | chr8.3:67613108-67613127 | MS.gene84719:intron | 25.0% |
| !! | TGCGTAACTTGTAAATTATT+TGG | + | chr8.3:67614060-67614079 | MS.gene84719:intron | 25.0% |
| !! | TTTAAAACCAGAAATGTTTC+TGG | + | chr8.3:67614799-67614818 | MS.gene84719:intron | 25.0% |
| !!! | AATGCTTTATTTCTTCTTGT+AGG | + | chr8.3:67613160-67613179 | MS.gene84719:intron | 25.0% |
| !!! | GTTACTTTTGATAGATTCAA+TGG | + | chr8.3:67612553-67612572 | MS.gene84719:CDS | 25.0% |
| !!! | GTTGATTATTTTTCTCAAAC+TGG | + | chr8.3:67614442-67614461 | MS.gene84719:intron | 25.0% |
| AAGCTGATGTAGATATTAAC+AGG | + | chr8.3:67613248-67613267 | MS.gene84719:intron | 30.0% | |
| AGTGTTCTTATGATGATAGA+GGG | + | chr8.3:67613680-67613699 | MS.gene84719:CDS | 30.0% | |
| ATCGATGTTCATTGTTTATC+CGG | + | chr8.3:67613956-67613975 | MS.gene84719:CDS | 30.0% | |
| CAAAAGCAATTGTATTCTGA+AGG | + | chr8.3:67613733-67613752 | MS.gene84719:CDS | 30.0% | |
| CTACCAAAAGAAAATTCTCA+AGG | + | chr8.3:67615362-67615381 | MS.gene84719:CDS | 30.0% | |
| GCTCATAATTTACTGATAAG+TGG | + | chr8.3:67614128-67614147 | MS.gene84719:intron | 30.0% | |
| GTATGGAAAACACTGTTAAA+CGG | + | chr8.3:67613393-67613412 | MS.gene84719:intron | 30.0% | |
| TAAAAAATTTACCTGGCACT+AGG | - | chr8.3:67612628-67612647 | None:intergenic | 30.0% | |
| TAATCAACCAGAAACATTTC+TGG | - | chr8.3:67614809-67614828 | None:intergenic | 30.0% | |
| TCTTGCCATTGTAAATACTA+GGG | + | chr8.3:67615642-67615661 | MS.gene84719:CDS | 30.0% | |
| TTAACATTTCCAAAGCCTTT+CGG | + | chr8.3:67614032-67614051 | MS.gene84719:intron | 30.0% | |
| TTAGTATTTGTTTGTGTCTC+TGG | + | chr8.3:67612980-67612999 | MS.gene84719:intron | 30.0% | |
| TTCGAGATCAGTTAAACAAA+GGG | + | chr8.3:67613918-67613937 | MS.gene84719:CDS | 30.0% | |
| ! | AAACTAGTTTGTCAGATTTG+TGG | + | chr8.3:67613528-67613547 | MS.gene84719:intron | 30.0% |
| ! | AGTCCTTGAGAATTTTCTTT+TGG | - | chr8.3:67615368-67615387 | None:intergenic | 30.0% |
| ! | CCAACGCATACAAAATTTTA+AGG | - | chr8.3:67614103-67614122 | None:intergenic | 30.0% |
| ! | CCTTAAAATTTTGTATGCGT+TGG | + | chr8.3:67614100-67614119 | MS.gene84719:intron | 30.0% |
| ! | CTGTTCATTTTCAACAACAT+CGG | - | chr8.3:67614667-67614686 | None:intergenic | 30.0% |
| ! | GATAGATTCAATGGTTTTCT+TGG | + | chr8.3:67612562-67612581 | MS.gene84719:CDS | 30.0% |
| ! | GTTTTCCATACATAATAGTC+AGG | - | chr8.3:67613384-67613403 | None:intergenic | 30.0% |
| !!! | TTCAGATCTTTTTCAAGTGA+TGG | + | chr8.3:67615463-67615482 | MS.gene84719:CDS | 30.0% |
| AAGTTACGCAAATAACCGAA+AGG | - | chr8.3:67614050-67614069 | None:intergenic | 35.0% | |
| ACTTTCTTGTGAAATCCAGA+TGG | + | chr8.3:67615114-67615133 | MS.gene84719:intron | 35.0% | |
| ATCATTATCTATTTCAGGCC+TGG | + | chr8.3:67614496-67614515 | MS.gene84719:intron | 35.0% | |
| CACACTGCATCATTTAAAGA+CGG | - | chr8.3:67613629-67613648 | None:intergenic | 35.0% | |
| CAGTGTTCTTATGATGATAG+AGG | + | chr8.3:67613679-67613698 | MS.gene84719:CDS | 35.0% | |
| CATGAATCAATGCAGTTAAG+GGG | - | chr8.3:67615144-67615163 | None:intergenic | 35.0% | |
| CCAACTCAAAATACAATGCA+AGG | + | chr8.3:67613468-67613487 | MS.gene84719:intron | 35.0% | |
| CGTAAATACCTTAATCAAGC+CGG | - | chr8.3:67613978-67613997 | None:intergenic | 35.0% | |
| CTTTAAATGATGCAGTGTGA+AGG | + | chr8.3:67613630-67613649 | MS.gene84719:intron | 35.0% | |
| GCATGAATCAATGCAGTTAA+GGG | - | chr8.3:67615145-67615164 | None:intergenic | 35.0% | |
| GTACAATTAGCATGGCATAT+CGG | + | chr8.3:67614955-67614974 | MS.gene84719:intron | 35.0% | |
| GTCTAATTTCATGCTTTCCA+TGG | + | chr8.3:67613840-67613859 | MS.gene84719:intron | 35.0% | |
| GTCTTGCCATTGTAAATACT+AGG | + | chr8.3:67615641-67615660 | MS.gene84719:CDS | 35.0% | |
| GTGTTCCAACAATTCTTCTA+AGG | + | chr8.3:67613707-67613726 | MS.gene84719:CDS | 35.0% | |
| GTTCGAGATCAGTTAAACAA+AGG | + | chr8.3:67613917-67613936 | MS.gene84719:CDS | 35.0% | |
| TAACAAACCTGTGTCATGTT+GGG | - | chr8.3:67614732-67614751 | None:intergenic | 35.0% | |
| TATCTATTAGAACAGCAACC+AGG | - | chr8.3:67614349-67614368 | None:intergenic | 35.0% | |
| TCCTCTTTGTTGAAGTTGAA+AGG | - | chr8.3:67615295-67615314 | None:intergenic | 35.0% | |
| TCCTTCCCTAGTATTTACAA+TGG | - | chr8.3:67615650-67615669 | None:intergenic | 35.0% | |
| TCCTTTCAACTTCAACAAAG+AGG | + | chr8.3:67615291-67615310 | MS.gene84719:CDS | 35.0% | |
| TCTTTGTTGAAGTTGAAAGG+AGG | - | chr8.3:67615292-67615311 | None:intergenic | 35.0% | |
| TGCATCCTTAGAAGAATTGT+TGG | - | chr8.3:67613715-67613734 | None:intergenic | 35.0% | |
| TGCATGAATCAATGCAGTTA+AGG | - | chr8.3:67615146-67615165 | None:intergenic | 35.0% | |
| TTAACAAACCTGTGTCATGT+TGG | - | chr8.3:67614733-67614752 | None:intergenic | 35.0% | |
| TTTCTTCCTTGGATATTAGC+TGG | + | chr8.3:67612503-67612522 | MS.gene84719:CDS | 35.0% | |
| ! | AAGCAATTGTATTCTGAAGG+AGG | + | chr8.3:67613736-67613755 | MS.gene84719:CDS | 35.0% |
| ! | ATCTATTGTAACTTGCAGTG+TGG | + | chr8.3:67612468-67612487 | MS.gene84719:CDS | 35.0% |
| ! | TTGTTTATCCGGCTTGATTA+AGG | + | chr8.3:67613967-67613986 | MS.gene84719:CDS | 35.0% |
| !! | CCTTGCATTGTATTTTGAGT+TGG | - | chr8.3:67613471-67613490 | None:intergenic | 35.0% |
| !!! | AATTTTGTATGCGTTGGCTA+TGG | + | chr8.3:67614106-67614125 | MS.gene84719:intron | 35.0% |
| AAAGGACCACTTTCGTATCT+TGG | - | chr8.3:67615496-67615515 | None:intergenic | 40.0% | |
| AAGATTGCTCTCACATAGCA+TGG | + | chr8.3:67615240-67615259 | MS.gene84719:CDS | 40.0% | |
| AATGGAGCGTAGAGAAACTT+CGG | + | chr8.3:67615407-67615426 | MS.gene84719:CDS | 40.0% | |
| ACATGTTAATCTGCGTGGTA+AGG | + | chr8.3:67613320-67613339 | MS.gene84719:intron | 40.0% | |
| AGAGAATCAAGTACACCAGT+TGG | - | chr8.3:67614534-67614553 | None:intergenic | 40.0% | |
| AGATGTTTGATCACGGACTT+CGG | - | chr8.3:67614283-67614302 | None:intergenic | 40.0% | |
| AGGAAATTCATCATTGCAGG+AGG | - | chr8.3:67615272-67615291 | None:intergenic | 40.0% | |
| AGGAGGAAATTCATCATTGC+AGG | - | chr8.3:67615275-67615294 | None:intergenic | 40.0% | |
| CATTGGTCACGATTGAGAAA+CGG | + | chr8.3:67615556-67615575 | MS.gene84719:CDS | 40.0% | |
| CCACCTTAGGAAGAATAGAA+TGG | + | chr8.3:67615389-67615408 | MS.gene84719:CDS | 40.0% | |
| CCATTCTATTCTTCCTAAGG+TGG | - | chr8.3:67615392-67615411 | None:intergenic | 40.0% | |
| GAAGATATGACAGCGAACAT+TGG | + | chr8.3:67615539-67615558 | MS.gene84719:CDS | 40.0% | |
| GCCATTGTAAATACTAGGGA+AGG | + | chr8.3:67615646-67615665 | MS.gene84719:CDS | 40.0% | |
| GCTCCATTCTATTCTTCCTA+AGG | - | chr8.3:67615395-67615414 | None:intergenic | 40.0% | |
| GCTTGCTCAATTGAAATACC+GGG | - | chr8.3:67615603-67615622 | None:intergenic | 40.0% | |
| GTAAATACTAGGGAAGGAAG+AGG | + | chr8.3:67615652-67615671 | MS.gene84719:CDS | 40.0% | |
| GTAAATGAGCGAAACGAGAT+TGG | - | chr8.3:67614840-67614859 | None:intergenic | 40.0% | |
| GTAACTCCAAGATACGAAAG+TGG | + | chr8.3:67615487-67615506 | MS.gene84719:CDS | 40.0% | |
| GTCACCATGTGAACAAATTG+AGG | + | chr8.3:67615315-67615334 | MS.gene84719:CDS | 40.0% | |
| GTCTCTGGTATAGAAGATTC+TGG | + | chr8.3:67612995-67613014 | MS.gene84719:intron | 40.0% | |
| TGACTGGGCAATCAATTTGA+TGG | + | chr8.3:67614641-67614660 | MS.gene84719:CDS | 40.0% | |
| TGGAAGGAAGTAACTTGACA+AGG | - | chr8.3:67614605-67614624 | None:intergenic | 40.0% | |
| TGTACTTGATTCTCTCACAC+CGG | + | chr8.3:67614539-67614558 | MS.gene84719:CDS | 40.0% | |
| TTCATGCTTTCCATGGATGA+AGG | + | chr8.3:67613847-67613866 | MS.gene84719:intron | 40.0% | |
| TTTACAATGGCAAGACTTGC+AGG | - | chr8.3:67615637-67615656 | None:intergenic | 40.0% | |
| TTTCGACATGTTAATCTGCG+TGG | + | chr8.3:67613315-67613334 | MS.gene84719:intron | 40.0% | |
| ! | GCATCCTCAATTTGTTCACA+TGG | - | chr8.3:67615322-67615341 | None:intergenic | 40.0% |
| ! | GGCTTGCTCAATTGAAATAC+CGG | - | chr8.3:67615604-67615623 | None:intergenic | 40.0% |
| !! | CAATGAACATCGATTCCATG+TGG | - | chr8.3:67613950-67613969 | None:intergenic | 40.0% |
| !! | TGATGCAGTGTGAAGGTATT+TGG | + | chr8.3:67613637-67613656 | MS.gene84719:intron | 40.0% |
| !!! | GTCTCGATTCCTTTTTTCCT+CGG | - | chr8.3:67615437-67615456 | None:intergenic | 40.0% |
| AACAAAGGGATAGTGCCACA+TGG | + | chr8.3:67613932-67613951 | MS.gene84719:CDS | 45.0% | |
| AATCTGCGTGGTAAGGAACT+CGG | + | chr8.3:67613327-67613346 | MS.gene84719:intron | 45.0% | |
| AGAAGCTGCTCTTCTTGACT+GGG | + | chr8.3:67614626-67614645 | MS.gene84719:CDS | 45.0% | |
| AGACTTGCAGGCTTCTTAGA+TGG | - | chr8.3:67615625-67615644 | None:intergenic | 45.0% | |
| AGTTGGAAGCTCTCTAAACC+AGG | - | chr8.3:67614517-67614536 | None:intergenic | 45.0% | |
| ATGTGACACGTGTCTCACTT+CGG | - | chr8.3:67612533-67612552 | None:intergenic | 45.0% | |
| ATTCCTTCTGCCTTCATCCA+TGG | - | chr8.3:67613860-67613879 | None:intergenic | 45.0% | |
| CGCAAATAACCGAAAGGCTT+TGG | - | chr8.3:67614044-67614063 | None:intergenic | 45.0% | |
| GACTTCGGCCATTTATGCAT+AGG | - | chr8.3:67614268-67614287 | None:intergenic | 45.0% | |
| GAGCACGAGATGTTTGATCA+CGG | - | chr8.3:67614290-67614309 | None:intergenic | 45.0% | |
| GAGGGAAGATGTTTCTTCCT+TGG | + | chr8.3:67612492-67612511 | MS.gene84719:CDS | 45.0% | |
| GATCTCGAACGAATGCTTCT+TGG | - | chr8.3:67613907-67613926 | None:intergenic | 45.0% | |
| GCTGGAGACCTATGCATAAA+TGG | + | chr8.3:67614257-67614276 | MS.gene84719:intron | 45.0% | |
| GGAAAAAAGGAATCGAGACG+AGG | + | chr8.3:67615438-67615457 | MS.gene84719:CDS | 45.0% | |
| GGCTATTCTCAGCAGTAATG+CGG | - | chr8.3:67613886-67613905 | None:intergenic | 45.0% | |
| TGGTTTAGAGAGCTTCCAAC+TGG | + | chr8.3:67614516-67614535 | MS.gene84719:CDS | 45.0% | |
| TTCTCAAGGACTTCCACCTT+AGG | + | chr8.3:67615376-67615395 | MS.gene84719:CDS | 45.0% | |
| TTGCATTGCATCACTTGCTC+CGG | - | chr8.3:67614561-67614580 | None:intergenic | 45.0% | |
| TTTCCATGGATGAAGGCAGA+AGG | + | chr8.3:67613854-67613873 | MS.gene84719:intron | 45.0% | |
| ! | AACCTCTCACCACTAGCTTA+AGG | - | chr8.3:67613356-67613375 | None:intergenic | 45.0% |
| ! | TGTAACTTGCAGTGTGGAGA+GGG | + | chr8.3:67612474-67612493 | MS.gene84719:CDS | 45.0% |
| ! | TTGTAACTTGCAGTGTGGAG+AGG | + | chr8.3:67612473-67612492 | MS.gene84719:CDS | 45.0% |
| !!! | TCTTTTTTAAAATATTTTAT+TGG | - | chr8.3:67612940-67612959 | None:intergenic | 5.0% |
| AAGTGGGCAGTTTGTCTGAG+CGG | + | chr8.3:67614145-67614164 | MS.gene84719:intron | 50.0% | |
| ACCTCAGGCTGAAACTCAGA+AGG | - | chr8.3:67612592-67612611 | None:intergenic | 50.0% | |
| ACTCGGACACCTTAAGCTAG+TGG | + | chr8.3:67613344-67613363 | MS.gene84719:intron | 50.0% | |
| AGAAGAGCAGCTTCTGTGGA+AGG | - | chr8.3:67614621-67614640 | None:intergenic | 50.0% | |
| ATAGGTCTCCAGCTGTAGAG+TGG | - | chr8.3:67614250-67614269 | None:intergenic | 50.0% | |
| CACCTTAAGCTAGTGGTGAG+AGG | + | chr8.3:67613351-67613370 | MS.gene84719:intron | 50.0% | |
| CAGAAGCTGCTCTTCTTGAC+TGG | + | chr8.3:67614625-67614644 | MS.gene84719:CDS | 50.0% | |
| GGAAGGAAGAGGAGAAGCTT+GGG | + | chr8.3:67615663-67615682 | MS.gene84719:CDS | 50.0% | |
| GTCAAGAAGAGCAGCTTCTG+TGG | - | chr8.3:67614625-67614644 | None:intergenic | 50.0% | |
| TACTGCATCCACTCTACAGC+TGG | + | chr8.3:67614239-67614258 | MS.gene84719:intron | 50.0% | |
| TCAGCCTGAGGTTCCTACAA+GGG | + | chr8.3:67612600-67612619 | MS.gene84719:CDS | 50.0% | |
| TTCAGCCTGAGGTTCCTACA+AGG | + | chr8.3:67612599-67612618 | MS.gene84719:CDS | 50.0% | |
| TTCGGAGCTCCGAGGAAAAA+AGG | + | chr8.3:67615425-67615444 | MS.gene84719:CDS | 50.0% | |
| ! | GGTTGGCCAGCTAATATCCA+AGG | - | chr8.3:67612512-67612531 | None:intergenic | 50.0% |
| AGAGAAACTTCGGAGCTCCG+AGG | + | chr8.3:67615417-67615436 | MS.gene84719:CDS | 55.0% | |
| AGTGGGCAGTTTGTCTGAGC+GGG | + | chr8.3:67614146-67614165 | MS.gene84719:intron | 55.0% | |
| CAGTTAAGGGGTCTGCCATC+TGG | - | chr8.3:67615132-67615151 | None:intergenic | 55.0% | |
| CTGGCACTAGGTACCCTTGT+AGG | - | chr8.3:67612616-67612635 | None:intergenic | 55.0% | |
| GAATGCGCGCAACGTAGCTA+TGG | + | chr8.3:67614698-67614717 | MS.gene84719:CDS | 55.0% | |
| GACACGTGTCTCACTTCGGT+TGG | - | chr8.3:67612529-67612548 | None:intergenic | 55.0% | |
| GCCTTCTGAGTTTCAGCCTG+AGG | + | chr8.3:67612588-67612607 | MS.gene84719:CDS | 55.0% | |
| GGAGTTCAGACGCTGCTAAG+CGG | + | chr8.3:67613414-67613433 | MS.gene84719:intron | 55.0% | |
| GGGAAGGAAGAGGAGAAGCT+TGG | + | chr8.3:67615662-67615681 | MS.gene84719:CDS | 55.0% | |
| GGTACCCTTGTAGGAACCTC+AGG | - | chr8.3:67612607-67612626 | None:intergenic | 55.0% | |
| TTTCGCGCCCAACATGACAC+AGG | + | chr8.3:67614722-67614741 | MS.gene84719:CDS | 55.0% | |
| !! | CTACAAGGGTACCTAGTGCC+AGG | + | chr8.3:67612614-67612633 | MS.gene84719:CDS | 55.0% |
| ACGGCGTGCGCAAGTTATGC+AGG | + | chr8.3:67615575-67615594 | MS.gene84719:CDS | 60.0% | |
| GAGCGGGGAAGGTTGCTCAA+GGG | + | chr8.3:67614162-67614181 | MS.gene84719:intron | 60.0% | |
| GCAGTTTGTCTGAGCGGGGA+AGG | + | chr8.3:67614151-67614170 | MS.gene84719:intron | 60.0% | |
| GCGCAAGTTATGCAGGCACC+CGG | + | chr8.3:67615582-67615601 | MS.gene84719:CDS | 60.0% | |
| GTGGGCAGTTTGTCTGAGCG+GGG | + | chr8.3:67614147-67614166 | MS.gene84719:intron | 60.0% | |
| TGAGCGGGGAAGGTTGCTCA+AGG | + | chr8.3:67614161-67614180 | MS.gene84719:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 67612451 | 67615690 | 67612451 | ID=MS.gene84719 |
| chr8.3 | mRNA | 67612451 | 67615690 | 67612451 | ID=MS.gene84719.t1;Parent=MS.gene84719 |
| chr8.3 | exon | 67612451 | 67612635 | 67612451 | ID=MS.gene84719.t1.exon1;Parent=MS.gene84719.t1 |
| chr8.3 | CDS | 67612451 | 67612635 | 67612451 | ID=cds.MS.gene84719.t1;Parent=MS.gene84719.t1 |
| chr8.3 | exon | 67613645 | 67613765 | 67613645 | ID=MS.gene84719.t1.exon2;Parent=MS.gene84719.t1 |
| chr8.3 | CDS | 67613645 | 67613765 | 67613645 | ID=cds.MS.gene84719.t1;Parent=MS.gene84719.t1 |
| chr8.3 | exon | 67613869 | 67613988 | 67613869 | ID=MS.gene84719.t1.exon3;Parent=MS.gene84719.t1 |
| chr8.3 | CDS | 67613869 | 67613988 | 67613869 | ID=cds.MS.gene84719.t1;Parent=MS.gene84719.t1 |
| chr8.3 | exon | 67614513 | 67614743 | 67614513 | ID=MS.gene84719.t1.exon4;Parent=MS.gene84719.t1 |
| chr8.3 | CDS | 67614513 | 67614743 | 67614513 | ID=cds.MS.gene84719.t1;Parent=MS.gene84719.t1 |
| chr8.3 | exon | 67615133 | 67615690 | 67615133 | ID=MS.gene84719.t1.exon5;Parent=MS.gene84719.t1 |
| chr8.3 | CDS | 67615133 | 67615690 | 67615133 | ID=cds.MS.gene84719.t1;Parent=MS.gene84719.t1 |
| Gene Sequence |
| Protein sequence |
