Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85391.t1 | XP_003595171.1 | 97.3 | 411 | 11 | 0 | 4 | 414 | 90 | 500 | 9.80E-216 | 759.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85391.t1 | O22607 | 85.7 | 414 | 50 | 2 | 4 | 411 | 96 | 506 | 1.2e-193 | 677.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85391.t1 | A2Q555 | 97.3 | 411 | 11 | 0 | 4 | 414 | 90 | 500 | 7.1e-216 | 759.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85391 | MS.gene89324 | PPI |
MS.gene85391 | MS.gene003568 | PPI |
MS.gene85391 | MS.gene055205 | PPI |
MS.gene85391 | MS.gene057771 | PPI |
MS.gene85391 | MS.gene062996 | PPI |
MS.gene85391 | MS.gene030630 | PPI |
MS.gene85391 | MS.gene46108 | PPI |
MS.gene85391 | MS.gene91577 | PPI |
MS.gene28396 | MS.gene85391 | PPI |
MS.gene85391 | MS.gene57380 | PPI |
MS.gene89800 | MS.gene85391 | PPI |
MS.gene70227 | MS.gene85391 | PPI |
MS.gene85391 | MS.gene57378 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85391.t1 | MTR_2g039250 | 98.054 | 411 | 8 | 0 | 4 | 414 | 90 | 500 | 0.0 | 839 |
MS.gene85391.t1 | MTR_2g100090 | 73.333 | 420 | 102 | 4 | 4 | 413 | 49 | 468 | 0.0 | 637 |
MS.gene85391.t1 | MTR_4g096880 | 30.521 | 403 | 232 | 10 | 4 | 394 | 49 | 415 | 5.23e-50 | 174 |
MS.gene85391.t1 | MTR_4g073080 | 28.351 | 388 | 236 | 8 | 6 | 393 | 50 | 395 | 3.52e-43 | 156 |
MS.gene85391.t1 | MTR_8g080700 | 29.283 | 321 | 185 | 10 | 65 | 368 | 155 | 450 | 4.18e-31 | 124 |
MS.gene85391.t1 | MTR_5g024090 | 28.173 | 323 | 187 | 12 | 65 | 368 | 149 | 445 | 5.42e-26 | 109 |
MS.gene85391.t1 | MTR_4g119620 | 32.258 | 186 | 106 | 9 | 141 | 317 | 16 | 190 | 3.82e-13 | 70.5 |
MS.gene85391.t1 | MTR_1g072140 | 33.071 | 127 | 74 | 5 | 191 | 317 | 66 | 181 | 2.03e-12 | 68.2 |
MS.gene85391.t1 | MTR_8g038550 | 29.050 | 179 | 99 | 8 | 191 | 368 | 264 | 415 | 3.77e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85391.t1 | AT2G19520 | 86.232 | 414 | 48 | 2 | 4 | 411 | 96 | 506 | 0.0 | 748 |
MS.gene85391.t1 | AT4G29730 | 77.831 | 415 | 73 | 4 | 4 | 412 | 86 | 487 | 0.0 | 672 |
MS.gene85391.t1 | AT4G29730 | 77.937 | 349 | 58 | 4 | 4 | 346 | 86 | 421 | 0.0 | 564 |
MS.gene85391.t1 | AT4G29730 | 77.937 | 349 | 58 | 4 | 4 | 346 | 86 | 421 | 0.0 | 564 |
MS.gene85391.t1 | AT5G58230 | 31.373 | 408 | 228 | 12 | 4 | 397 | 49 | 418 | 2.18e-53 | 184 |
MS.gene85391.t1 | AT2G16780 | 29.870 | 385 | 228 | 10 | 12 | 393 | 58 | 403 | 6.43e-52 | 179 |
MS.gene85391.t1 | AT4G35050 | 30.343 | 379 | 224 | 10 | 13 | 389 | 60 | 400 | 5.23e-51 | 177 |
MS.gene85391.t1 | AT2G19540 | 27.160 | 324 | 190 | 9 | 65 | 368 | 152 | 449 | 2.50e-28 | 116 |
MS.gene85391.t1 | AT3G49660 | 32.418 | 182 | 107 | 6 | 141 | 317 | 13 | 183 | 1.28e-14 | 74.7 |
Find 106 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGATTCTTGTCTCATATTA+TGG | 0.145473 | 2.1:-47885890 | MS.gene85391:CDS |
ACTCATCCCTATGTGCTTTC+TGG | 0.188692 | 2.1:-47886575 | MS.gene85391:CDS |
AACTGCAGGTGAACAGAATT+AGG | 0.201591 | 2.1:-47887320 | MS.gene85391:intron |
GATGATAATCTGATTCTTAC+TGG | 0.289842 | 2.1:-47884484 | MS.gene85391:CDS |
CGAATATCAGGTTCTCATTT+GGG | 0.289930 | 2.1:-47887157 | MS.gene85391:intron |
CCAGACAAATCATCTGTATT+TGG | 0.294688 | 2.1:-47883793 | MS.gene85391:CDS |
CAGACCAGAGGATGAGGTTT+TGG | 0.296223 | 2.1:-47881642 | MS.gene85391:CDS |
CGTCGGAATCTCACTTCTAA+TGG | 0.298835 | 2.1:-47883992 | MS.gene85391:CDS |
GGCTGCTGTCCTTTGTGTTC+AGG | 0.317326 | 2.1:-47883933 | MS.gene85391:intron |
AAGATGGTCTCTTGAACATT+TGG | 0.323836 | 2.1:-47883759 | MS.gene85391:CDS |
TCGAATATCAGGTTCTCATT+TGG | 0.329738 | 2.1:-47887158 | MS.gene85391:intron |
TCGTCAGAGGCTTTATCTTT+CGG | 0.354547 | 2.1:-47888514 | MS.gene85391:CDS |
TGATTCTTGTCTCATATTAT+GGG | 0.362654 | 2.1:-47885889 | MS.gene85391:CDS |
CCTTATGAGCCTCAAATTTG+TGG | 0.370728 | 2.1:+47883954 | None:intergenic |
CTGTAGCAGCAGCTGTTATA+TGG | 0.376245 | 2.1:+47886404 | None:intergenic |
AGATGGTCTCTTGAACATTT+GGG | 0.379807 | 2.1:-47883758 | MS.gene85391:CDS |
GTCGGAATCTCACTTCTAAT+GGG | 0.385606 | 2.1:-47883991 | MS.gene85391:CDS |
ATCATCTGTATTTGGAAGTT+CGG | 0.390303 | 2.1:-47883785 | MS.gene85391:CDS |
CCACAAATTTGAGGCTCATA+AGG | 0.390431 | 2.1:-47883954 | MS.gene85391:CDS |
TTCGCAATCACCAAAGTATT+CGG | 0.400930 | 2.1:+47888242 | None:intergenic |
GGACAAGCAAATTACCTAGA+AGG | 0.401460 | 2.1:+47886271 | None:intergenic |
TGGCTCTAGTCCCGTGGTTA+AGG | 0.405121 | 2.1:-47885856 | MS.gene85391:intron |
GTCTTGTACTTCTTGACAAA+TGG | 0.411539 | 2.1:+47887811 | None:intergenic |
CTATGAAGTAAATTATTTGT+CGG | 0.413845 | 2.1:+47881571 | None:intergenic |
CTGATCTTCACTGTGTTGAC+TGG | 0.414362 | 2.1:-47884516 | MS.gene85391:CDS |
ACAAAGTTGTTGACTTTCAC+TGG | 0.415463 | 2.1:-47882719 | MS.gene85391:CDS |
ATCTCACTTCTAATGGGGTT+GGG | 0.425488 | 2.1:-47883985 | MS.gene85391:CDS |
GTGTTTAGACGTACCAGATC+TGG | 0.436158 | 2.1:+47887081 | None:intergenic |
AGCTGCTGAGCACATTTCTC+AGG | 0.444349 | 2.1:-47888192 | MS.gene85391:intron |
TGTGAAATTTATACCTCGCC+TGG | 0.449747 | 2.1:+47887778 | None:intergenic |
GTGGGGTCCTCAGCTTGAAC+AGG | 0.450211 | 2.1:-47888550 | MS.gene85391:CDS |
TAAGAATCAGATTATCATCA+TGG | 0.450908 | 2.1:+47884488 | None:intergenic |
CCAAATACAGATGATTTGTC+TGG | 0.454135 | 2.1:+47883793 | None:intergenic |
AATCTCACTTCTAATGGGGT+TGG | 0.456850 | 2.1:-47883986 | MS.gene85391:CDS |
CCAAGGACAGCATGACGGTT+AGG | 0.459165 | 2.1:+47887120 | None:intergenic |
CCTAACCGTCATGCTGTCCT+TGG | 0.461359 | 2.1:-47887120 | MS.gene85391:CDS |
AAAACAATAAATTCTCCTCC+AGG | 0.470379 | 2.1:-47883601 | MS.gene85391:CDS |
ACTGCAGGTGAACAGAATTA+GGG | 0.472069 | 2.1:-47887319 | MS.gene85391:intron |
GAGCAAACTCTGCATTATCT+TGG | 0.475826 | 2.1:+47886612 | None:intergenic |
GTCTCCTATCCACAAATTTG+AGG | 0.478555 | 2.1:-47883963 | MS.gene85391:CDS |
GAGGCTTTATCTTTCGGAGC+AGG | 0.480425 | 2.1:-47888508 | MS.gene85391:intron |
TACAAACTCTCGTCCAGATC+TGG | 0.484345 | 2.1:-47887094 | MS.gene85391:intron |
GAAAGCACATAGGGATGAGT+TGG | 0.489607 | 2.1:+47886578 | None:intergenic |
GGACCAAGAGGTATCTACTC+TGG | 0.490956 | 2.1:-47886328 | MS.gene85391:CDS |
GCCACAAAATTCTAAGATTG+TGG | 0.493140 | 2.1:-47887292 | MS.gene85391:CDS |
TTTGGAAGTTCGGCAGAAGA+TGG | 0.505919 | 2.1:-47883775 | MS.gene85391:CDS |
TCTGCCAAAACCTCATCCTC+TGG | 0.508658 | 2.1:+47881638 | None:intergenic |
GCTACAGACTCCAAGTCGTC+TGG | 0.517720 | 2.1:-47886388 | MS.gene85391:CDS |
TGCCCAGAGTAGATACCTCT+TGG | 0.519561 | 2.1:+47886325 | None:intergenic |
AAGAATCAGATTATCATCAT+GGG | 0.520993 | 2.1:+47884489 | None:intergenic |
TGAGCCTCAAATTTGTGGAT+AGG | 0.524528 | 2.1:+47883959 | None:intergenic |
ATTGTGAGGTTGTGAAGACT+AGG | 0.526799 | 2.1:-47888220 | MS.gene85391:CDS |
GCTCTACAGACCAGAGGATG+AGG | 0.528088 | 2.1:-47881648 | MS.gene85391:CDS |
GCGCAGGAGTTCTGTAGTGT+TGG | 0.532397 | 2.1:-47885915 | MS.gene85391:CDS |
GACCAAGAGGTATCTACTCT+GGG | 0.533161 | 2.1:-47886327 | MS.gene85391:CDS |
CTGTTCGCATGTTTGATCGT+CGG | 0.535951 | 2.1:-47884009 | MS.gene85391:CDS |
TCTGATGATTGTGAAAGTAC+TGG | 0.537207 | 2.1:-47882663 | MS.gene85391:CDS |
GAACATTTGGGATTATGAGA+AGG | 0.540866 | 2.1:-47883746 | MS.gene85391:intron |
ATATTATGGGATGCACGTGT+TGG | 0.547603 | 2.1:-47885876 | MS.gene85391:CDS |
AAGACAAAACAGTGGTGTTG+TGG | 0.552182 | 2.1:-47886438 | MS.gene85391:CDS |
ACTGGAATGCACATGATCCA+TGG | 0.552739 | 2.1:-47882701 | MS.gene85391:CDS |
AATGGATCCACCAGACGACT+TGG | 0.554576 | 2.1:+47886378 | None:intergenic |
AATGCATATACCTTAACCAC+GGG | 0.558054 | 2.1:+47885846 | None:intergenic |
ATCAGGGCTGTCTGTGTGAG+TGG | 0.558313 | 2.1:+47887269 | None:intergenic |
AAAGCACATAGGGATGAGTT+GGG | 0.564818 | 2.1:+47886579 | None:intergenic |
ATTGTGAAAGTACTGGTGGA+GGG | 0.565365 | 2.1:-47882656 | MS.gene85391:CDS |
GATTGTGAAAGTACTGGTGG+AGG | 0.565707 | 2.1:-47882657 | MS.gene85391:CDS |
ATACCTCTTGGTCCGACAGA+GGG | 0.566372 | 2.1:+47886337 | None:intergenic |
GAGACACTAACAAGCGTCCA+TGG | 0.569485 | 2.1:+47882684 | None:intergenic |
ATTATCATCCTGAAGTGCGC+AGG | 0.570960 | 2.1:-47885931 | MS.gene85391:intron |
CTAACCTCCAGAAAGCACAT+AGG | 0.574936 | 2.1:+47886568 | None:intergenic |
TACAAGACTATCATACATCC+AGG | 0.578483 | 2.1:-47887796 | MS.gene85391:CDS |
CATCCCTATGTGCTTTCTGG+AGG | 0.579064 | 2.1:-47886572 | MS.gene85391:intron |
TAACCTCCAGAAAGCACATA+GGG | 0.584328 | 2.1:+47886569 | None:intergenic |
CATACCTATGACCAGCATGT+TGG | 0.585061 | 2.1:+47883569 | None:intergenic |
TGGAAGTGTTCCGAATACTT+TGG | 0.588867 | 2.1:-47888252 | MS.gene85391:CDS |
GACAAGCAAATTACCTAGAA+GGG | 0.589687 | 2.1:+47886272 | None:intergenic |
ATGATAATCTGATTCTTACT+GGG | 0.596654 | 2.1:-47884483 | MS.gene85391:intron |
TGTGAAAGTACTGGTGGAGG+GGG | 0.601796 | 2.1:-47882654 | MS.gene85391:CDS |
GACGAGAGTTTGTAGCTCCA+AGG | 0.607337 | 2.1:+47887103 | None:intergenic |
ACAGACTCCAAGTCGTCTGG+TGG | 0.608680 | 2.1:-47886385 | MS.gene85391:CDS |
AAACAATAAATTCTCCTCCA+GGG | 0.610657 | 2.1:-47883600 | MS.gene85391:CDS |
AGGTATCTACTCTGGGCATG+AGG | 0.620844 | 2.1:-47886320 | MS.gene85391:CDS |
GAAATTCAAATCTCATGTGG+TGG | 0.621431 | 2.1:-47881609 | MS.gene85391:CDS |
AGCCCCTCTGTCGGACCAAG+AGG | 0.621913 | 2.1:-47886340 | MS.gene85391:CDS |
GATGATTGTGAAAGTACTGG+TGG | 0.625467 | 2.1:-47882660 | MS.gene85391:CDS |
GGCAAGAAGATAGAGCGAGC+TGG | 0.627353 | 2.1:-47883625 | MS.gene85391:CDS |
ACTGCTGATAGCCCCTCTGT+CGG | 0.633878 | 2.1:-47886349 | MS.gene85391:CDS |
TAAGTAGCCTGTTCAAGCTG+AGG | 0.637076 | 2.1:+47888543 | None:intergenic |
TTGTGAAAGTACTGGTGGAG+GGG | 0.637305 | 2.1:-47882655 | MS.gene85391:CDS |
TAGCTCCAAGGACAGCATGA+CGG | 0.640688 | 2.1:+47887115 | None:intergenic |
GGAGAAATTCAAATCTCATG+TGG | 0.650248 | 2.1:-47881612 | MS.gene85391:CDS |
AATAAATCACCTGAACACAA+AGG | 0.653593 | 2.1:+47883924 | None:intergenic |
TCGGAATCTCACTTCTAATG+GGG | 0.655112 | 2.1:-47883990 | MS.gene85391:CDS |
ACGTGTTGGCTCTAGTCCCG+TGG | 0.656856 | 2.1:-47885862 | MS.gene85391:CDS |
TACCTCTTGGTCCGACAGAG+GGG | 0.658677 | 2.1:+47886338 | None:intergenic |
GATACCTCTTGGTCCGACAG+AGG | 0.662252 | 2.1:+47886336 | None:intergenic |
GACTATCATACATCCAGGCG+AGG | 0.665684 | 2.1:-47887791 | MS.gene85391:intron |
TTGTGAGGTTGTGAAGACTA+GGG | 0.669241 | 2.1:-47888219 | MS.gene85391:CDS |
AGAATCAGATTATCATCATG+GGG | 0.671943 | 2.1:+47884490 | None:intergenic |
TTTGGTGATTGCGAATTGTG+AGG | 0.672940 | 2.1:-47888234 | MS.gene85391:CDS |
TGAGGATACTGTTGAAGACG+TGG | 0.676563 | 2.1:-47886302 | MS.gene85391:CDS |
AAATGCATATACCTTAACCA+CGG | 0.679246 | 2.1:+47885845 | None:intergenic |
CTACTTACAAGAATCGTCAG+AGG | 0.686539 | 2.1:-47888527 | MS.gene85391:CDS |
TGATTTGCTCTACAGACCAG+AGG | 0.693020 | 2.1:-47881654 | MS.gene85391:CDS |
TTCAGGAAAAGACAAAACAG+TGG | 0.734648 | 2.1:-47886446 | MS.gene85391:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 47881583 | 47889000 | 47881583 | ID=MS.gene85391 |
chr2.1 | mRNA | 47881583 | 47889000 | 47881583 | ID=MS.gene85391.t1;Parent=MS.gene85391 |
chr2.1 | exon | 47888993 | 47889000 | 47888993 | ID=MS.gene85391.t1.exon1;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47888993 | 47889000 | 47888993 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47888509 | 47888572 | 47888509 | ID=MS.gene85391.t1.exon2;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47888509 | 47888572 | 47888509 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47888193 | 47888279 | 47888193 | ID=MS.gene85391.t1.exon3;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47888193 | 47888279 | 47888193 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47887792 | 47887854 | 47887792 | ID=MS.gene85391.t1.exon4;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47887792 | 47887854 | 47887792 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47887269 | 47887334 | 47887269 | ID=MS.gene85391.t1.exon5;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47887269 | 47887334 | 47887269 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47887095 | 47887169 | 47887095 | ID=MS.gene85391.t1.exon6;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47887095 | 47887169 | 47887095 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47886573 | 47886648 | 47886573 | ID=MS.gene85391.t1.exon7;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47886573 | 47886648 | 47886573 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47886286 | 47886463 | 47886286 | ID=MS.gene85391.t1.exon8;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47886286 | 47886463 | 47886286 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47885857 | 47885938 | 47885857 | ID=MS.gene85391.t1.exon9;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47885857 | 47885938 | 47885857 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47884484 | 47884557 | 47884484 | ID=MS.gene85391.t1.exon10;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47884484 | 47884557 | 47884484 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47883934 | 47884045 | 47883934 | ID=MS.gene85391.t1.exon11;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47883934 | 47884045 | 47883934 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47883747 | 47883821 | 47883747 | ID=MS.gene85391.t1.exon12;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47883747 | 47883821 | 47883747 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47883574 | 47883650 | 47883574 | ID=MS.gene85391.t1.exon13;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47883574 | 47883650 | 47883574 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47882644 | 47882743 | 47882644 | ID=MS.gene85391.t1.exon14;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47882644 | 47882743 | 47882644 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
chr2.1 | exon | 47881583 | 47881690 | 47881583 | ID=MS.gene85391.t1.exon15;Parent=MS.gene85391.t1 |
chr2.1 | CDS | 47881583 | 47881690 | 47881583 | ID=cds.MS.gene85391.t1;Parent=MS.gene85391.t1 |
Gene Sequence |
Protein sequence |