Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85568.t1 | XP_003591797.1 | 96.1 | 436 | 17 | 0 | 1 | 436 | 1 | 436 | 2.00E-235 | 824.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85568.t1 | Q9FSH9 | 34.9 | 441 | 215 | 14 | 25 | 429 | 41 | 445 | 1.7e-57 | 224.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85568.t1 | G7I467 | 96.1 | 436 | 17 | 0 | 1 | 436 | 1 | 436 | 1.4e-235 | 824.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049573 | MS.gene85568 | 0.827638 | 1.40E-54 | -1.69E-46 |
| MS.gene05141 | MS.gene85568 | 0.826942 | 2.06E-54 | -1.69E-46 |
| MS.gene05142 | MS.gene85568 | 0.84697 | 1.55E-59 | -1.69E-46 |
| MS.gene051946 | MS.gene85568 | 0.877115 | 8.14E-69 | -1.69E-46 |
| MS.gene057014 | MS.gene85568 | 0.844973 | 5.42E-59 | -1.69E-46 |
| MS.gene059236 | MS.gene85568 | 0.802274 | 6.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85568.t1 | MTR_1g093100 | 96.101 | 436 | 17 | 0 | 1 | 436 | 1 | 436 | 0.0 | 850 |
| MS.gene85568.t1 | MTR_1g072420 | 53.333 | 450 | 174 | 8 | 3 | 435 | 4 | 434 | 3.50e-155 | 446 |
| MS.gene85568.t1 | MTR_1g072450 | 51.570 | 446 | 177 | 11 | 8 | 435 | 9 | 433 | 4.11e-143 | 416 |
| MS.gene85568.t1 | MTR_2g022450 | 50.554 | 451 | 182 | 9 | 1 | 435 | 4 | 429 | 1.19e-142 | 414 |
| MS.gene85568.t1 | MTR_1g072380 | 50.905 | 442 | 173 | 9 | 20 | 435 | 27 | 450 | 1.69e-140 | 409 |
| MS.gene85568.t1 | MTR_4g117090 | 44.165 | 437 | 192 | 14 | 28 | 430 | 33 | 451 | 2.25e-99 | 305 |
| MS.gene85568.t1 | MTR_2g022460 | 38.717 | 421 | 206 | 11 | 31 | 434 | 26 | 411 | 7.27e-79 | 250 |
| MS.gene85568.t1 | MTR_2g022320 | 40.308 | 454 | 209 | 14 | 1 | 429 | 1 | 417 | 3.03e-76 | 244 |
| MS.gene85568.t1 | MTR_2g022430 | 38.681 | 455 | 217 | 17 | 1 | 428 | 1 | 420 | 1.24e-73 | 237 |
| MS.gene85568.t1 | MTR_2g022370 | 37.613 | 444 | 220 | 15 | 13 | 431 | 8 | 419 | 5.61e-72 | 233 |
| MS.gene85568.t1 | MTR_7g113790 | 33.898 | 472 | 239 | 17 | 1 | 435 | 1 | 436 | 8.94e-71 | 230 |
| MS.gene85568.t1 | MTR_2g022380 | 36.607 | 448 | 223 | 15 | 13 | 431 | 8 | 423 | 4.35e-68 | 223 |
| MS.gene85568.t1 | MTR_2g022350 | 36.712 | 444 | 222 | 15 | 13 | 428 | 8 | 420 | 4.81e-66 | 218 |
| MS.gene85568.t1 | MTR_2g022490 | 37.406 | 401 | 209 | 12 | 28 | 409 | 27 | 404 | 1.35e-63 | 211 |
| MS.gene85568.t1 | MTR_2g022480 | 35.814 | 430 | 230 | 13 | 3 | 409 | 4 | 410 | 2.03e-63 | 211 |
| MS.gene85568.t1 | MTR_1g093130 | 64.634 | 164 | 40 | 2 | 221 | 384 | 9 | 154 | 4.20e-59 | 191 |
| MS.gene85568.t1 | MTR_0252s0030 | 37.900 | 219 | 112 | 8 | 183 | 387 | 138 | 346 | 1.19e-30 | 121 |
| MS.gene85568.t1 | MTR_3g046300 | 26.343 | 391 | 223 | 14 | 55 | 420 | 106 | 456 | 3.43e-19 | 90.1 |
| MS.gene85568.t1 | MTR_5g091130 | 25.952 | 420 | 235 | 18 | 32 | 420 | 177 | 551 | 1.77e-16 | 82.0 |
| MS.gene85568.t1 | MTR_7g105850 | 23.843 | 432 | 236 | 16 | 38 | 417 | 70 | 460 | 3.46e-15 | 77.8 |
| MS.gene85568.t1 | MTR_1g111350 | 24.402 | 418 | 239 | 14 | 18 | 417 | 104 | 462 | 1.66e-14 | 75.5 |
| MS.gene85568.t1 | MTR_8g103880 | 23.563 | 348 | 217 | 12 | 44 | 376 | 114 | 427 | 2.58e-14 | 75.1 |
| MS.gene85568.t1 | MTR_5g012490 | 23.746 | 299 | 172 | 11 | 144 | 417 | 197 | 464 | 6.25e-13 | 70.9 |
| MS.gene85568.t1 | MTR_7g117430 | 25.888 | 394 | 215 | 17 | 46 | 417 | 141 | 479 | 1.33e-12 | 69.7 |
| MS.gene85568.t1 | MTR_3g097150 | 26.133 | 375 | 205 | 17 | 28 | 368 | 75 | 411 | 2.23e-12 | 68.9 |
| MS.gene85568.t1 | MTR_7g062360 | 24.337 | 415 | 229 | 19 | 48 | 427 | 61 | 425 | 2.48e-12 | 68.9 |
| MS.gene85568.t1 | MTR_3g068000 | 23.348 | 454 | 276 | 20 | 4 | 417 | 15 | 436 | 6.11e-12 | 67.8 |
| MS.gene85568.t1 | MTR_5g016260 | 23.018 | 391 | 228 | 17 | 47 | 417 | 89 | 426 | 5.79e-11 | 64.7 |
| MS.gene85568.t1 | MTR_5g016260 | 23.018 | 391 | 228 | 17 | 47 | 417 | 89 | 426 | 6.02e-11 | 65.1 |
| MS.gene85568.t1 | MTR_4g100990 | 22.635 | 296 | 170 | 10 | 148 | 417 | 203 | 465 | 9.46e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85568.t1 | AT1G03220 | 50.885 | 452 | 185 | 10 | 1 | 435 | 1 | 432 | 1.28e-140 | 409 |
| MS.gene85568.t1 | AT1G03230 | 50.233 | 430 | 178 | 9 | 23 | 435 | 23 | 433 | 1.54e-135 | 396 |
| MS.gene85568.t1 | AT5G19120 | 34.411 | 433 | 210 | 13 | 1 | 417 | 1 | 375 | 2.64e-55 | 188 |
| MS.gene85568.t1 | AT5G19110 | 31.944 | 432 | 245 | 13 | 10 | 430 | 8 | 401 | 5.31e-52 | 180 |
| MS.gene85568.t1 | AT5G19110 | 31.944 | 432 | 245 | 13 | 10 | 430 | 44 | 437 | 9.73e-52 | 180 |
| MS.gene85568.t1 | AT5G48430 | 29.773 | 440 | 241 | 18 | 14 | 431 | 10 | 403 | 1.61e-41 | 152 |
| MS.gene85568.t1 | AT5G19100 | 32.869 | 359 | 177 | 13 | 64 | 410 | 59 | 365 | 3.12e-41 | 151 |
| MS.gene85568.t1 | AT3G52500 | 24.416 | 471 | 247 | 23 | 12 | 417 | 36 | 462 | 6.85e-16 | 80.1 |
| MS.gene85568.t1 | AT1G09750 | 26.347 | 334 | 208 | 9 | 28 | 346 | 85 | 395 | 2.08e-15 | 78.6 |
| MS.gene85568.t1 | AT3G25700 | 25.559 | 313 | 185 | 12 | 35 | 318 | 72 | 365 | 3.16e-15 | 77.8 |
| MS.gene85568.t1 | AT3G54400 | 23.333 | 390 | 228 | 13 | 44 | 417 | 85 | 419 | 9.69e-15 | 76.3 |
| MS.gene85568.t1 | AT2G42980 | 24.940 | 417 | 246 | 16 | 29 | 417 | 142 | 519 | 5.18e-13 | 71.2 |
| MS.gene85568.t1 | AT1G25510 | 23.821 | 403 | 231 | 12 | 35 | 419 | 136 | 480 | 6.07e-13 | 70.9 |
| MS.gene85568.t1 | AT5G02190 | 24.682 | 393 | 220 | 19 | 60 | 417 | 86 | 437 | 7.68e-13 | 70.5 |
| MS.gene85568.t1 | AT2G39710 | 24.156 | 385 | 228 | 18 | 60 | 417 | 78 | 425 | 4.02e-12 | 68.2 |
| MS.gene85568.t1 | AT3G18490 | 24.457 | 368 | 223 | 15 | 27 | 376 | 142 | 472 | 6.41e-12 | 67.8 |
| MS.gene85568.t1 | AT5G36260 | 24.235 | 425 | 247 | 18 | 23 | 417 | 49 | 428 | 6.69e-12 | 67.8 |
Find 77 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAATCTATTAGAGTTTC+TGG | 0.165523 | 1.3:-54665480 | MS.gene85568:CDS |
| AGGATTAACAGTGCTAATTT+TGG | 0.220235 | 1.3:+54665398 | None:intergenic |
| AATAAATTTGCAATTTGTTT+AGG | 0.256299 | 1.3:-54665657 | MS.gene85568:CDS |
| ACTGCTCCAAGTTCTTTCTT+AGG | 0.269389 | 1.3:-54665531 | MS.gene85568:CDS |
| TAATTTGTTGCAATTTGATT+TGG | 0.302015 | 1.3:-54665019 | MS.gene85568:CDS |
| TGGTTCCACCAAATCCATTT+TGG | 0.303617 | 1.3:+54665418 | None:intergenic |
| TCTATAGACCAAAATGGATT+TGG | 0.304145 | 1.3:-54665426 | MS.gene85568:CDS |
| GAACTTGGAGCAGTGCTAAC+AGG | 0.319657 | 1.3:+54665540 | None:intergenic |
| TCCACAAATGGAAACTATTC+TGG | 0.339835 | 1.3:-54665828 | MS.gene85568:CDS |
| ATGGGAAGAACTAGTGCTTT+TGG | 0.342491 | 1.3:+54666143 | None:intergenic |
| TCAAAGAGAGAAATGGTAAA+AGG | 0.347826 | 1.3:+54666201 | None:intergenic |
| ACCAGAATAGTTTCCATTTG+TGG | 0.353898 | 1.3:+54665827 | None:intergenic |
| AATGTGCTTTGGAATATTAT+TGG | 0.354109 | 1.3:-54665198 | MS.gene85568:CDS |
| CACTATTGGTGCACATCAAT+TGG | 0.356503 | 1.3:-54665046 | MS.gene85568:CDS |
| TGTTAATCCTTACACAATAA+TGG | 0.361315 | 1.3:-54665385 | MS.gene85568:CDS |
| TCACCTTACAACACTGTAAC+AGG | 0.361909 | 1.3:-54665897 | MS.gene85568:CDS |
| TGATAAGGATGTGATTTGTT+TGG | 0.378748 | 1.3:-54665151 | MS.gene85568:CDS |
| AGATCAATGGTTAGGTTGAT+TGG | 0.385333 | 1.3:+54666053 | None:intergenic |
| GGCTGAAGTGTCTCTAGTTA+TGG | 0.386521 | 1.3:+54666124 | None:intergenic |
| GTTGAACCTGTAGCACCATT+TGG | 0.387509 | 1.3:-54665303 | MS.gene85568:CDS |
| CCAATAGTGATTGAAGTCAT+TGG | 0.390759 | 1.3:+54665060 | None:intergenic |
| AAGTATTAGTTCTTCAAGAA+TGG | 0.395644 | 1.3:-54665262 | MS.gene85568:CDS |
| GATAAGGATGTGATTTGTTT+GGG | 0.395759 | 1.3:-54665150 | MS.gene85568:CDS |
| GAAGACTCCATTATTGTGTA+AGG | 0.405084 | 1.3:+54665378 | None:intergenic |
| CCAATGACTTCAATCACTAT+TGG | 0.423745 | 1.3:-54665060 | MS.gene85568:CDS |
| AAATCAGATGAGTATTTCAT+TGG | 0.428391 | 1.3:-54665504 | MS.gene85568:CDS |
| GCTGAAGTGTCTCTAGTTAT+GGG | 0.430452 | 1.3:+54666125 | None:intergenic |
| GTCAAAGGTATGGCTGGTCT+TGG | 0.431367 | 1.3:-54665732 | MS.gene85568:CDS |
| AATTTGATTTGGCTACTTCA+AGG | 0.431390 | 1.3:-54665008 | MS.gene85568:CDS |
| AGTATTAGTTCTTCAAGAAT+GGG | 0.433655 | 1.3:-54665261 | MS.gene85568:CDS |
| GATTTGGCTACTTCAAGGCT+TGG | 0.435992 | 1.3:-54665003 | MS.gene85568:CDS |
| GGTTCAAGTGTTGTACAAAA+TGG | 0.447374 | 1.3:-54665768 | MS.gene85568:CDS |
| GTTTCAGTTCAATCCACAAA+TGG | 0.450626 | 1.3:-54665840 | MS.gene85568:CDS |
| CATGTTCCAAATGGTGCTAC+AGG | 0.465297 | 1.3:+54665297 | None:intergenic |
| TCATCTCAATGCTCACTCTT+CGG | 0.468149 | 1.3:-54665957 | MS.gene85568:CDS |
| TGCTCACTCTTCGGTTCACA+TGG | 0.475656 | 1.3:-54665948 | MS.gene85568:CDS |
| ATCAACCTAACCATTGATCT+TGG | 0.483505 | 1.3:-54666050 | MS.gene85568:CDS |
| AGATCAATGGAAGGAACATC+TGG | 0.487406 | 1.3:+54665237 | None:intergenic |
| AATGGTTCGTATTAATGATA+AGG | 0.488541 | 1.3:-54665166 | MS.gene85568:CDS |
| TGAGATGAGCTACATAGGAT+TGG | 0.490397 | 1.3:+54665972 | None:intergenic |
| CTAACAGGGTTTGTTAAAAG+AGG | 0.490487 | 1.3:+54665555 | None:intergenic |
| TGCAGAATGAGAATGTGCTT+TGG | 0.501132 | 1.3:-54665209 | MS.gene85568:CDS |
| ATAGACCAAAATGGATTTGG+TGG | 0.508375 | 1.3:-54665423 | MS.gene85568:CDS |
| AAGGGTGTCAAAGGTATGGC+TGG | 0.510377 | 1.3:-54665738 | MS.gene85568:CDS |
| ATTCTGCAACACTAGATCAA+TGG | 0.510620 | 1.3:+54665224 | None:intergenic |
| TTGATTTGAGTAGTGTATTG+AGG | 0.510903 | 1.3:+54666095 | None:intergenic |
| GTAACAGGTGTGTCCACATC+TGG | 0.519945 | 1.3:-54665882 | MS.gene85568:CDS |
| ATTTGTTTAGGTACTCAAGA+TGG | 0.523453 | 1.3:-54665645 | MS.gene85568:CDS |
| ACACCTGTTACAGTGTTGTA+AGG | 0.525207 | 1.3:+54665894 | None:intergenic |
| TGCTAAGGGTGTCAAAGGTA+TGG | 0.525240 | 1.3:-54665742 | MS.gene85568:CDS |
| AGTTTAACTGAGGAAGCCAT+TGG | 0.532184 | 1.3:+54666230 | None:intergenic |
| TCATCAGTGTTCAATAGATA+AGG | 0.532661 | 1.3:+54665600 | None:intergenic |
| ATAGCCACCACCAAGATCAA+TGG | 0.536373 | 1.3:+54666040 | None:intergenic |
| GGTCTTGCTAAGGGTGTCAA+AGG | 0.536708 | 1.3:-54665747 | MS.gene85568:CDS |
| GAGATGATCAAAGAGAGAAA+TGG | 0.541198 | 1.3:+54666194 | None:intergenic |
| CACCACCAAGATCAATGGTT+AGG | 0.541567 | 1.3:+54666045 | None:intergenic |
| AACCTAACCATTGATCTTGG+TGG | 0.541576 | 1.3:-54666047 | MS.gene85568:CDS |
| AACTTGGAGCAGTGCTAACA+GGG | 0.559183 | 1.3:+54665541 | None:intergenic |
| CTTGCAAAACATGTTCCAAA+TGG | 0.563050 | 1.3:+54665288 | None:intergenic |
| AGAGGCTTGTGCTAAGGAGG+TGG | 0.567491 | 1.3:+54666172 | None:intergenic |
| AGTAGTGTATTGAGGTGTTG+AGG | 0.567636 | 1.3:+54666103 | None:intergenic |
| AAGGTATGGCTGGTCTTGGA+AGG | 0.572528 | 1.3:-54665728 | MS.gene85568:CDS |
| GAAAGAGGCTTGTGCTAAGG+AGG | 0.580158 | 1.3:+54666169 | None:intergenic |
| TCTGAAAGAGGCTTGTGCTA+AGG | 0.582130 | 1.3:+54666166 | None:intergenic |
| CTAACCATTGATCTTGGTGG+TGG | 0.588038 | 1.3:-54666044 | MS.gene85568:CDS |
| TGTACAAAATGGTCTTGCTA+AGG | 0.594025 | 1.3:-54665757 | MS.gene85568:CDS |
| AGCATTGAGATGAGCTACAT+AGG | 0.594102 | 1.3:+54665967 | None:intergenic |
| AAAGCTGATGAAAATTGTGA+AGG | 0.597985 | 1.3:+54665690 | None:intergenic |
| TATTATTGGAGCTAATGCAA+TGG | 0.621482 | 1.3:-54665184 | MS.gene85568:CDS |
| AAGGATGAAGAGTTTAACTG+AGG | 0.626120 | 1.3:+54666220 | None:intergenic |
| TGACTGAATGTCACCAGATG+TGG | 0.628722 | 1.3:+54665869 | None:intergenic |
| GTACAAAATGGTCTTGCTAA+GGG | 0.632901 | 1.3:-54665756 | MS.gene85568:CDS |
| GTTAGGTTGATTGGTACAAG+TGG | 0.638523 | 1.3:+54666062 | None:intergenic |
| TGCAACACTAGATCAATGGA+AGG | 0.640859 | 1.3:+54665228 | None:intergenic |
| TTACAGTGTTGTAAGGTGAA+CGG | 0.641762 | 1.3:+54665901 | None:intergenic |
| AATTAAGTTCTAAACAGATG+AGG | 0.652970 | 1.3:+54664930 | None:intergenic |
| TGGTGCTACAGGTTCAACAG+TGG | 0.677434 | 1.3:+54665308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAATTTGCAATTTGTTT+AGG | - | chr1.3:54665509-54665528 | MS.gene85568:CDS | 15.0% |
| !!! | ATTTTGGTCTATAGATAAAA+GGG | + | chr1.3:54665735-54665754 | None:intergenic | 20.0% |
| !!! | TAATTTGTTGCAATTTGATT+TGG | - | chr1.3:54666147-54666166 | MS.gene85568:CDS | 20.0% |
| ! | AAATCAGATGAGTATTTCAT+TGG | - | chr1.3:54665662-54665681 | MS.gene85568:CDS | 25.0% |
| ! | AATGGTTCGTATTAATGATA+AGG | - | chr1.3:54666000-54666019 | MS.gene85568:CDS | 25.0% |
| ! | CCACAAATAAAAAGAAAGTT+AGG | + | chr1.3:54665380-54665399 | None:intergenic | 25.0% |
| ! | TGTTAATCCTTACACAATAA+TGG | - | chr1.3:54665781-54665800 | MS.gene85568:CDS | 25.0% |
| !! | AAGTATTAGTTCTTCAAGAA+TGG | - | chr1.3:54665904-54665923 | MS.gene85568:CDS | 25.0% |
| !! | AGTATTAGTTCTTCAAGAAT+GGG | - | chr1.3:54665905-54665924 | MS.gene85568:CDS | 25.0% |
| !! | CTTTTATCTATAGACCAAAA+TGG | - | chr1.3:54665734-54665753 | MS.gene85568:CDS | 25.0% |
| !!! | AATGTGCTTTGGAATATTAT+TGG | - | chr1.3:54665968-54665987 | MS.gene85568:CDS | 25.0% |
| !!! | CATTTTGGTCTATAGATAAA+AGG | + | chr1.3:54665736-54665755 | None:intergenic | 25.0% |
| !!! | CCTAACTTTCTTTTTATTTG+TGG | - | chr1.3:54665377-54665396 | MS.gene85568:CDS | 25.0% |
| AAAGCTGATGAAAATTGTGA+AGG | + | chr1.3:54665479-54665498 | None:intergenic | 30.0% | |
| ATTTGTTTAGGTACTCAAGA+TGG | - | chr1.3:54665521-54665540 | MS.gene85568:CDS | 30.0% | |
| GTGAAATCTATTAGAGTTTC+TGG | - | chr1.3:54665686-54665705 | MS.gene85568:CDS | 30.0% | |
| TATTATTGGAGCTAATGCAA+TGG | - | chr1.3:54665982-54666001 | MS.gene85568:CDS | 30.0% | |
| TCAAAGAGAGAAATGGTAAA+AGG | + | chr1.3:54664968-54664987 | None:intergenic | 30.0% | |
| TCATCAGTGTTCAATAGATA+AGG | + | chr1.3:54665569-54665588 | None:intergenic | 30.0% | |
| TGCAGTGACAAAAAAATATG+TGG | - | chr1.3:54665242-54665261 | MS.gene85568:CDS | 30.0% | |
| TTTGCAAAAACTTCTCAAGT+TGG | - | chr1.3:54666061-54666080 | MS.gene85568:CDS | 30.0% | |
| ! | AGGATTAACAGTGCTAATTT+TGG | + | chr1.3:54665771-54665790 | None:intergenic | 30.0% |
| ! | TCTATAGACCAAAATGGATT+TGG | - | chr1.3:54665740-54665759 | MS.gene85568:CDS | 30.0% |
| ! | TTGATTTGAGTAGTGTATTG+AGG | + | chr1.3:54665074-54665093 | None:intergenic | 30.0% |
| ! | TTTTCACCTAAGAAAGAACT+TGG | + | chr1.3:54665644-54665663 | None:intergenic | 30.0% |
| !! | AATTTGATTTGGCTACTTCA+AGG | - | chr1.3:54666158-54666177 | MS.gene85568:CDS | 30.0% |
| !! | GATAAGGATGTGATTTGTTT+GGG | - | chr1.3:54666016-54666035 | MS.gene85568:CDS | 30.0% |
| !! | TGATAAGGATGTGATTTGTT+TGG | - | chr1.3:54666015-54666034 | MS.gene85568:CDS | 30.0% |
| !!! | ACATAGGATTGGTTTTAAAG+TGG | + | chr1.3:54665186-54665205 | None:intergenic | 30.0% |
| AAGGATGAAGAGTTTAACTG+AGG | + | chr1.3:54664949-54664968 | None:intergenic | 35.0% | |
| ACCAGAATAGTTTCCATTTG+TGG | + | chr1.3:54665342-54665361 | None:intergenic | 35.0% | |
| ATCAACCTAACCATTGATCT+TGG | - | chr1.3:54665116-54665135 | MS.gene85568:CDS | 35.0% | |
| ATTCTGCAACACTAGATCAA+TGG | + | chr1.3:54665945-54665964 | None:intergenic | 35.0% | |
| CCAATAGTGATTGAAGTCAT+TGG | + | chr1.3:54666109-54666128 | None:intergenic | 35.0% | |
| CCAATGACTTCAATCACTAT+TGG | - | chr1.3:54666106-54666125 | MS.gene85568:CDS | 35.0% | |
| CTTGCAAAACATGTTCCAAA+TGG | + | chr1.3:54665881-54665900 | None:intergenic | 35.0% | |
| GAAGACTCCATTATTGTGTA+AGG | + | chr1.3:54665791-54665810 | None:intergenic | 35.0% | |
| GAGATGATCAAAGAGAGAAA+TGG | + | chr1.3:54664975-54664994 | None:intergenic | 35.0% | |
| GTTTCAGTTCAATCCACAAA+TGG | - | chr1.3:54665326-54665345 | MS.gene85568:CDS | 35.0% | |
| TCCACAAATGGAAACTATTC+TGG | - | chr1.3:54665338-54665357 | MS.gene85568:CDS | 35.0% | |
| TTACAGTGTTGTAAGGTGAA+CGG | + | chr1.3:54665268-54665287 | None:intergenic | 35.0% | |
| ! | ATAGACCAAAATGGATTTGG+TGG | - | chr1.3:54665743-54665762 | MS.gene85568:CDS | 35.0% |
| ! | CAAGATGGTGTACTTTTCTT+TGG | - | chr1.3:54665536-54665555 | MS.gene85568:CDS | 35.0% |
| ! | GGTTCAAGTGTTGTACAAAA+TGG | - | chr1.3:54665398-54665417 | MS.gene85568:CDS | 35.0% |
| ! | GTACAAAATGGTCTTGCTAA+GGG | - | chr1.3:54665410-54665429 | MS.gene85568:CDS | 35.0% |
| ! | TGTACAAAATGGTCTTGCTA+AGG | - | chr1.3:54665409-54665428 | MS.gene85568:CDS | 35.0% |
| !! | AGATCAATGGTTAGGTTGAT+TGG | + | chr1.3:54665116-54665135 | None:intergenic | 35.0% |
| !! | CTAACAGGGTTTGTTAAAAG+AGG | + | chr1.3:54665614-54665633 | None:intergenic | 35.0% |
| !!! | AACTTCTCAAGTTGGTTTTG+TGG | - | chr1.3:54666069-54666088 | MS.gene85568:CDS | 35.0% |
| !!! | TGTGATTTGTTTGGGTTTTG+TGG | - | chr1.3:54666024-54666043 | MS.gene85568:CDS | 35.0% |
| AACCTAACCATTGATCTTGG+TGG | - | chr1.3:54665119-54665138 | MS.gene85568:CDS | 40.0% | |
| ACACCTGTTACAGTGTTGTA+AGG | + | chr1.3:54665275-54665294 | None:intergenic | 40.0% | |
| ACTGCTCCAAGTTCTTTCTT+AGG | - | chr1.3:54665635-54665654 | MS.gene85568:CDS | 40.0% | |
| AGATCAATGGAAGGAACATC+TGG | + | chr1.3:54665932-54665951 | None:intergenic | 40.0% | |
| CACTATTGGTGCACATCAAT+TGG | - | chr1.3:54666120-54666139 | MS.gene85568:CDS | 40.0% | |
| TCACCTTACAACACTGTAAC+AGG | - | chr1.3:54665269-54665288 | MS.gene85568:CDS | 40.0% | |
| TCATCTCAATGCTCACTCTT+CGG | - | chr1.3:54665209-54665228 | MS.gene85568:CDS | 40.0% | |
| TGAGATGAGCTACATAGGAT+TGG | + | chr1.3:54665197-54665216 | None:intergenic | 40.0% | |
| TGCAACACTAGATCAATGGA+AGG | + | chr1.3:54665941-54665960 | None:intergenic | 40.0% | |
| TGCAGAATGAGAATGTGCTT+TGG | - | chr1.3:54665957-54665976 | MS.gene85568:CDS | 40.0% | |
| ! | AGCATTGAGATGAGCTACAT+AGG | + | chr1.3:54665202-54665221 | None:intergenic | 40.0% |
| ! | ATGGGAAGAACTAGTGCTTT+TGG | + | chr1.3:54665026-54665045 | None:intergenic | 40.0% |
| ! | GCTGAAGTGTCTCTAGTTAT+GGG | + | chr1.3:54665044-54665063 | None:intergenic | 40.0% |
| ! | GGTGTACTTTTCTTTGGTGA+TGG | - | chr1.3:54665542-54665561 | MS.gene85568:CDS | 40.0% |
| ! | TAGTGCTTTTGGTCTGAAAG+AGG | + | chr1.3:54665015-54665034 | None:intergenic | 40.0% |
| ! | TGGTTCCACCAAATCCATTT+TGG | + | chr1.3:54665751-54665770 | None:intergenic | 40.0% |
| !! | AGTAGTGTATTGAGGTGTTG+AGG | + | chr1.3:54665066-54665085 | None:intergenic | 40.0% |
| !! | CTACTTCAAGGCTTGGTTTT+AGG | - | chr1.3:54666170-54666189 | MS.gene85568:CDS | 40.0% |
| !! | GTTAGGTTGATTGGTACAAG+TGG | + | chr1.3:54665107-54665126 | None:intergenic | 40.0% |
| !!! | ATCTTGGTGGTGGCTATTTT+TGG | - | chr1.3:54665132-54665151 | MS.gene85568:CDS | 40.0% |
| !!! | TCTTGGTGGTGGCTATTTTT+GGG | - | chr1.3:54665133-54665152 | MS.gene85568:CDS | 40.0% |
| !!! | TGGTTTTAGGTCACTCTTCT+TGG | - | chr1.3:54666183-54666202 | MS.gene85568:CDS | 40.0% |
| AACTTGGAGCAGTGCTAACA+GGG | + | chr1.3:54665628-54665647 | None:intergenic | 45.0% | |
| ATAGCCACCACCAAGATCAA+TGG | + | chr1.3:54665129-54665148 | None:intergenic | 45.0% | |
| CACCACCAAGATCAATGGTT+AGG | + | chr1.3:54665124-54665143 | None:intergenic | 45.0% | |
| CTAACCATTGATCTTGGTGG+TGG | - | chr1.3:54665122-54665141 | MS.gene85568:CDS | 45.0% | |
| GATTTGGCTACTTCAAGGCT+TGG | - | chr1.3:54666163-54666182 | MS.gene85568:CDS | 45.0% | |
| GTTGAACCTGTAGCACCATT+TGG | - | chr1.3:54665863-54665882 | MS.gene85568:CDS | 45.0% | |
| TCTGAAAGAGGCTTGTGCTA+AGG | + | chr1.3:54665003-54665022 | None:intergenic | 45.0% | |
| TGACTGAATGTCACCAGATG+TGG | + | chr1.3:54665300-54665319 | None:intergenic | 45.0% | |
| ! | GGCTGAAGTGTCTCTAGTTA+TGG | + | chr1.3:54665045-54665064 | None:intergenic | 45.0% |
| !! | CATGTTCCAAATGGTGCTAC+AGG | + | chr1.3:54665872-54665891 | None:intergenic | 45.0% |
| !! | TGCTAAGGGTGTCAAAGGTA+TGG | - | chr1.3:54665424-54665443 | MS.gene85568:CDS | 45.0% |
| !! | TGTTTGGGTTTTGTGGATGC+TGG | - | chr1.3:54666031-54666050 | MS.gene85568:CDS | 45.0% |
| !!! | TCTCAAGTTGGTTTTGTGGC+TGG | - | chr1.3:54666073-54666092 | MS.gene85568:CDS | 45.0% |
| GAAAGAGGCTTGTGCTAAGG+AGG | + | chr1.3:54665000-54665019 | None:intergenic | 50.0% | |
| GAACTTGGAGCAGTGCTAAC+AGG | + | chr1.3:54665629-54665648 | None:intergenic | 50.0% | |
| GTAACAGGTGTGTCCACATC+TGG | - | chr1.3:54665284-54665303 | MS.gene85568:CDS | 50.0% | |
| TGCTCACTCTTCGGTTCACA+TGG | - | chr1.3:54665218-54665237 | MS.gene85568:CDS | 50.0% | |
| !! | AAGGGTGTCAAAGGTATGGC+TGG | - | chr1.3:54665428-54665447 | MS.gene85568:CDS | 50.0% |
| !! | AAGGTATGGCTGGTCTTGGA+AGG | - | chr1.3:54665438-54665457 | MS.gene85568:CDS | 50.0% |
| !! | GGTCTTGCTAAGGGTGTCAA+AGG | - | chr1.3:54665419-54665438 | MS.gene85568:CDS | 50.0% |
| !! | GTCAAAGGTATGGCTGGTCT+TGG | - | chr1.3:54665434-54665453 | MS.gene85568:CDS | 50.0% |
| !! | TGGTGCTACAGGTTCAACAG+TGG | + | chr1.3:54665861-54665880 | None:intergenic | 50.0% |
| !!! | CAAGTTGGTTTTGTGGCTGG+TGG | - | chr1.3:54666076-54666095 | MS.gene85568:CDS | 50.0% |
| AGAGGCTTGTGCTAAGGAGG+TGG | + | chr1.3:54664997-54665016 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54664939 | 54666249 | 54664939 | ID=MS.gene85568 |
| chr1.3 | mRNA | 54664939 | 54666249 | 54664939 | ID=MS.gene85568.t1;Parent=MS.gene85568 |
| chr1.3 | exon | 54664939 | 54666249 | 54664939 | ID=MS.gene85568.t1.exon1;Parent=MS.gene85568.t1 |
| chr1.3 | CDS | 54664939 | 54666249 | 54664939 | ID=cds.MS.gene85568.t1;Parent=MS.gene85568.t1 |
| Gene Sequence |
| Protein sequence |
