AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05141


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05141.t1 MTR_3g467430 93.750 224 14 0 1 224 1 224 2.38e-157 434
MS.gene05141.t1 MTR_3g467420 87.054 224 29 0 1 224 1 224 1.95e-146 407
MS.gene05141.t1 MTR_2g070150 64.851 202 71 0 8 209 3 204 3.24e-97 282
MS.gene05141.t1 MTR_2g070180 61.321 212 82 0 8 219 3 214 1.20e-96 281
MS.gene05141.t1 MTR_2g070130 59.908 217 87 0 8 224 3 219 6.47e-96 279
MS.gene05141.t1 MTR_2g070140 63.054 203 75 0 22 224 1 203 9.01e-96 278
MS.gene05141.t1 MTR_2g070210 60.274 219 85 1 8 224 3 221 4.17e-93 272
MS.gene05141.t1 MTR_2g070060 57.604 217 92 0 8 224 3 219 2.88e-92 270
MS.gene05141.t1 MTR_2g070070 59.908 217 87 0 8 224 3 219 8.37e-91 266
MS.gene05141.t1 MTR_2g070110 58.525 217 89 1 8 224 3 218 1.66e-88 260
MS.gene05141.t1 MTR_2g070200 59.817 219 86 2 8 224 3 221 6.68e-88 259
MS.gene05141.t1 MTR_2g070120 58.252 206 86 0 8 213 3 208 1.22e-87 258
MS.gene05141.t1 MTR_4g124130 56.164 219 95 1 7 224 2 220 2.62e-87 257
MS.gene05141.t1 MTR_8g056940 53.917 217 100 0 8 224 3 219 4.19e-87 257
MS.gene05141.t1 MTR_5g076900 50.000 218 107 2 8 224 5 221 9.74e-74 223
MS.gene05141.t1 MTR_0186s0030 56.115 139 61 0 8 146 3 141 1.30e-53 169
MS.gene05141.t1 MTR_5g037380 41.818 220 119 4 5 215 1 220 9.60e-48 157
MS.gene05141.t1 MTR_7g065720 40.566 212 120 5 6 213 4 213 2.57e-45 150
MS.gene05141.t1 MTR_7g065270 40.271 221 126 6 6 222 4 222 8.03e-45 149
MS.gene05141.t1 MTR_8g061950 39.450 218 117 4 5 210 1 215 5.05e-44 147
MS.gene05141.t1 MTR_4g019780 40.000 215 116 7 6 213 5 213 3.99e-43 145
MS.gene05141.t1 MTR_8g087425 39.189 222 131 3 5 223 1 221 8.61e-43 144
MS.gene05141.t1 MTR_3g099757 46.154 169 90 1 5 173 1 168 1.42e-42 144
MS.gene05141.t1 MTR_1g090060 39.904 208 120 3 10 213 4 210 1.62e-42 143
MS.gene05141.t1 MTR_7g065265 41.150 226 125 7 1 222 1 222 2.30e-42 143
MS.gene05141.t1 MTR_7g065660 37.963 216 127 5 1 213 1 212 7.74e-42 142
MS.gene05141.t1 MTR_7g065290 39.381 226 129 7 1 222 1 222 1.04e-41 141
MS.gene05141.t1 MTR_7g065740 38.679 212 124 4 6 213 4 213 1.11e-41 141
MS.gene05141.t1 MTR_1g090100 40.000 210 121 3 9 214 2 210 1.04e-40 139
MS.gene05141.t1 MTR_5g040430 33.816 207 129 3 10 209 8 213 1.21e-40 139
MS.gene05141.t1 MTR_7g065750 39.286 224 123 7 1 217 1 218 1.25e-40 139
MS.gene05141.t1 MTR_7g065590 37.900 219 117 6 5 213 3 212 1.77e-40 138
MS.gene05141.t1 MTR_4g019790 37.383 214 127 5 5 213 1 212 2.09e-40 138
MS.gene05141.t1 MTR_4g059730 39.631 217 126 3 8 220 3 218 2.77e-40 137
MS.gene05141.t1 MTR_1g090150 40.845 213 107 8 8 210 2 205 2.81e-40 137
MS.gene05141.t1 MTR_7g065230 40.845 213 115 7 1 211 1 204 1.26e-39 136
MS.gene05141.t1 MTR_1g090090 39.423 208 121 4 10 213 4 210 1.69e-38 133
MS.gene05141.t1 MTR_8g087410 39.901 203 119 2 5 205 2 203 2.48e-38 132
MS.gene05141.t1 MTR_7g065630 36.019 211 126 5 6 213 22 226 2.93e-38 133
MS.gene05141.t1 MTR_1g090070 37.864 206 118 5 16 214 16 218 4.11e-38 132
MS.gene05141.t1 MTR_6g080440 38.235 204 112 6 23 217 17 215 1.48e-37 130
MS.gene05141.t1 MTR_7g065600 37.981 208 122 5 1 205 1 204 2.63e-37 130
MS.gene05141.t1 MTR_7g065710 36.098 205 126 4 10 213 5 205 3.44e-36 127
MS.gene05141.t1 MTR_7g065260 41.346 208 115 6 1 205 8 211 1.19e-35 126
MS.gene05141.t1 MTR_1g115195 38.308 201 118 5 10 205 4 203 2.92e-34 122
MS.gene05141.t1 MTR_7g065680 36.364 209 124 5 8 213 6 208 7.90e-34 121
MS.gene05141.t1 MTR_7g065700 37.321 209 126 5 6 213 4 208 2.70e-33 120
MS.gene05141.t1 MTR_7g065640 34.884 215 117 6 1 213 1 194 3.78e-33 119
MS.gene05141.t1 MTR_2g072120 60.294 68 27 0 52 119 1 68 5.76e-25 94.0
MS.gene05141.t1 MTR_7g100320 30.303 198 121 8 20 210 37 224 4.10e-14 69.3
MS.gene05141.t1 MTR_4g043640 57.143 42 18 0 153 194 44 85 2.02e-12 61.2
MS.gene05141.t1 MTR_1g067180 28.638 213 128 10 20 221 38 237 7.14e-12 63.2
MS.gene05141.t1 MTR_1g067180 29.293 198 123 8 20 210 35 222 7.40e-12 63.2
MS.gene05141.t1 MTR_5g037390 45.205 73 38 1 33 103 11 83 1.96e-11 58.9
MS.gene05141.t1 MTR_1g067180 31.461 178 105 8 20 190 38 205 2.10e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05141.t1 AT1G17180 63.594 217 79 0 8 224 3 219 3.63e-100 290
MS.gene05141.t1 AT1G78370 61.137 211 82 0 11 221 6 216 1.37e-99 288
MS.gene05141.t1 AT1G78380 61.972 213 81 0 8 220 3 215 1.39e-99 288
MS.gene05141.t1 AT1G17170 62.212 217 81 1 8 224 3 218 2.98e-94 275
MS.gene05141.t1 AT1G78360 58.796 216 88 1 10 224 5 220 6.60e-91 266
MS.gene05141.t1 AT1G78340 56.604 212 92 0 8 219 3 214 9.71e-90 263
MS.gene05141.t1 AT1G53680 57.143 217 91 2 10 224 8 224 2.21e-87 258
MS.gene05141.t1 AT1G78320 58.333 204 85 0 7 210 2 205 1.03e-83 248
MS.gene05141.t1 AT1G17190 52.294 218 104 0 5 222 1 218 1.00e-80 241
MS.gene05141.t1 AT3G43800 50.226 221 106 3 5 221 1 221 1.12e-73 223
MS.gene05141.t1 AT1G78320 50.490 204 74 1 7 210 2 178 4.94e-66 202
MS.gene05141.t1 AT1G10360 43.636 220 116 4 5 216 1 220 1.82e-51 166
MS.gene05141.t1 AT1G10370 41.818 220 120 4 5 216 1 220 9.17e-47 154
MS.gene05141.t1 AT2G29420 39.614 207 122 3 1 205 1 206 1.79e-46 154
MS.gene05141.t1 AT3G09270 38.942 208 122 4 7 210 4 210 5.77e-46 152
MS.gene05141.t1 AT1G59700 42.009 219 112 6 7 213 4 219 1.68e-45 151
MS.gene05141.t1 AT1G74590 37.333 225 125 5 7 220 5 224 2.32e-45 151
MS.gene05141.t1 AT5G62480 39.252 214 119 5 6 209 5 217 1.67e-43 146
MS.gene05141.t1 AT2G29440 39.512 205 112 4 8 205 5 204 1.36e-41 141
MS.gene05141.t1 AT1G27130 35.193 233 136 6 1 224 1 227 1.66e-39 135
MS.gene05141.t1 AT2G29490 39.130 207 112 5 7 205 5 205 3.35e-39 135
MS.gene05141.t1 AT1G69930 34.842 221 137 3 1 214 4 224 4.83e-39 135
MS.gene05141.t1 AT1G59670 37.220 223 131 5 7 220 4 226 1.10e-38 134
MS.gene05141.t1 AT2G29480 39.130 207 112 6 7 205 5 205 1.02e-37 131
MS.gene05141.t1 AT2G29450 37.156 218 125 5 7 217 4 216 2.20e-37 130
MS.gene05141.t1 AT1G27140 35.000 220 130 5 1 210 1 217 4.32e-37 130
MS.gene05141.t1 AT2G29460 37.438 203 121 4 7 205 5 205 4.18e-34 122
MS.gene05141.t1 AT1G69920 31.556 225 141 5 1 214 26 248 6.28e-34 122
MS.gene05141.t1 AT2G29470 35.321 218 127 6 7 212 5 220 3.88e-33 119
MS.gene05141.t1 AT5G62480 31.308 214 109 6 6 209 5 190 3.08e-24 96.3
MS.gene05141.t1 AT5G62480 31.308 214 110 6 6 209 5 191 3.19e-24 95.9
MS.gene05141.t1 AT5G02780 30.556 180 111 8 20 194 41 211 5.08e-11 60.8

Find 38 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCGATCACAAGCCAAGTTT+TGG 0.285418 3.4:-64453608 MS.gene05141:CDS
CCTCACCCTCACAAAATCTA+TGG 0.311690 3.4:-64451839 MS.gene05141:CDS
CTCTTATACCCTTCACTAGT+TGG 0.329236 3.4:-64451970 MS.gene05141:CDS
AAGTCATCTCCATCAAAATA+TGG 0.330764 3.4:+64452010 None:intergenic
TATATTAAGTGATTCACATA+TGG 0.358906 3.4:+64453692 None:intergenic
TTTCCATTATGAATCAAAAC+CGG 0.387956 3.4:+64453717 None:intergenic
TTTACACTTACGAGATATAT+GGG 0.406047 3.4:-64451946 MS.gene05141:CDS
GTGTCCTAAGCTTGTAGCTT+GGG 0.417667 3.4:-64451903 MS.gene05141:CDS
TTGGCCCAAGCTACAAGCTT+AGG 0.422848 3.4:+64451899 None:intergenic
ATATTAAGTGATTCACATAT+GGG 0.451582 3.4:+64453693 None:intergenic
AGCTTGTAGCTTGGGCCAAA+AGG 0.454879 3.4:-64451895 MS.gene05141:CDS
AATGAGAGTGAAAATTGCTT+TGG 0.455938 3.4:-64453832 MS.gene05141:CDS
TTGAGTACATTGATGAAGCT+TGG 0.459310 3.4:-64453668 MS.gene05141:CDS
TTGGCTTGTGATCGCTTGAA+AGG 0.469012 3.4:+64453615 None:intergenic
GAAAATTGCTTTGGAAGAGA+AGG 0.474522 3.4:-64453823 MS.gene05141:CDS
AATGTAATCTCCCCAAAACT+TGG 0.487995 3.4:+64453596 None:intergenic
TTCCATTATGAATCAAAACC+GGG 0.499687 3.4:+64453718 None:intergenic
AGCTTGGGCCAAAAGGTGTA+TGG 0.501382 3.4:-64451888 MS.gene05141:CDS
AAAATTGCTTTGGAAGAGAA+GGG 0.501739 3.4:-64453822 MS.gene05141:CDS
TGGCTTGTGATCGCTTGAAA+GGG 0.511102 3.4:+64453616 None:intergenic
ACTCTCATTGCATATACGCT+TGG 0.513803 3.4:+64453846 None:intergenic
AGGAAAGGTTGAAGAACAAG+AGG 0.520776 3.4:-64452092 MS.gene05141:CDS
AAGACTCTAGAAGATGAGCT+TGG 0.522791 3.4:-64452040 MS.gene05141:CDS
AATGAGTCAAAACATGACTA+AGG 0.525858 3.4:-64453895 MS.gene05141:CDS
ACAGCATTCGAAGGAAGCTA+TGG 0.529203 3.4:-64452117 MS.gene05141:CDS
AGTGTCCTAAGCTTGTAGCT+TGG 0.541196 3.4:-64451904 MS.gene05141:CDS
TGACTTTGGGTATGTTGATG+TGG 0.546781 3.4:-64451993 MS.gene05141:CDS
AGTGTAAAACCAACTAGTGA+AGG 0.558553 3.4:+64451961 None:intergenic
AAGGTTGAAGAACAAGAGGA+AGG 0.559445 3.4:-64452088 MS.gene05141:CDS
GGGTCAGAGGGCAAAAGAGA+AGG 0.585068 3.4:+64453636 None:intergenic
TGATCGCTTGAAAGGGTCAG+AGG 0.611869 3.4:+64453623 None:intergenic
GTGTAAAACCAACTAGTGAA+GGG 0.625155 3.4:+64451962 None:intergenic
ATTCGAAGGAAGCTATGGAA+AGG 0.640495 3.4:-64452112 MS.gene05141:CDS
GATCGCTTGAAAGGGTCAGA+GGG 0.644766 3.4:+64453624 None:intergenic
TGTAGGTATACAGCATTCGA+AGG 0.646256 3.4:-64452126 MS.gene05141:intron
ATGCGGTATAAACAGAAACA+TGG 0.648867 3.4:-64451809 MS.gene05141:CDS
AAGGAAGCTATGGAAAGGAA+AGG 0.650275 3.4:-64452107 MS.gene05141:CDS
AAACATGACTAAGGACAGTG+TGG 0.712979 3.4:-64453886 MS.gene05141:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAATTAATTTTAAAAT+AGG + chr3.4:64452539-64452558 None:intergenic 0.0%
!!! TAAAAATTAATTTTAAAATA+GGG + chr3.4:64452538-64452557 None:intergenic 0.0%
!!! ATATGATTTTACTTTAAAAT+AGG - chr3.4:64452774-64452793 MS.gene05141:intron 10.0%
!!! TATGATTTTACTTTAAAATA+GGG - chr3.4:64452775-64452794 MS.gene05141:intron 10.0%
!! AAAATATGGTTCAATATTTA+TGG + chr3.4:64453335-64453354 None:intergenic 15.0%
!! ATATTCAAACATAAATCATT+GGG + chr3.4:64452909-64452928 None:intergenic 15.0%
!! CACTTATTGTTAAAAATTAT+TGG - chr3.4:64453055-64453074 MS.gene05141:intron 15.0%
!! CCAAAAAAAAAAAAAAATCA+AGG - chr3.4:64453132-64453151 MS.gene05141:intron 15.0%
!! GTTAAATGTAAAATGATTTA+GGG - chr3.4:64452404-64452423 MS.gene05141:intron 15.0%
!! TATATTCAAACATAAATCAT+TGG + chr3.4:64452910-64452929 None:intergenic 15.0%
!!! CCTTGATTTTTTTTTTTTTT+TGG + chr3.4:64453135-64453154 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr3.4:64452806-64452825 MS.gene05141:intron 15.0%
!!! TTTGTATGTTTTTTTATCAA+TGG - chr3.4:64452173-64452192 MS.gene05141:intron 15.0%
!! AATCGATTATGATTAAAAGT+TGG - chr3.4:64452382-64452401 MS.gene05141:intron 20.0%
!! ATATACTAGTTCACAAAATA+TGG + chr3.4:64453349-64453368 None:intergenic 20.0%
!! ATATTAAGTGATTCACATAT+GGG + chr3.4:64452003-64452022 None:intergenic 20.0%
!! ATGGATAATAATGTAAAAGT+GGG + chr3.4:64453390-64453409 None:intergenic 20.0%
!! GGTTAAATGTAAAATGATTT+AGG - chr3.4:64452403-64452422 MS.gene05141:intron 20.0%
!! TATATTAAGTGATTCACATA+TGG + chr3.4:64452004-64452023 None:intergenic 20.0%
!! TATGGATAATAATGTAAAAG+TGG + chr3.4:64453391-64453410 None:intergenic 20.0%
!! TGAATTGCATAATAAATTCA+AGG - chr3.4:64453102-64453121 MS.gene05141:intron 20.0%
!! TTAAAAAAGAGTTACTCATA+GGG - chr3.4:64453511-64453530 MS.gene05141:intron 20.0%
!! TTTAAAAAAGAGTTACTCAT+AGG - chr3.4:64453510-64453529 MS.gene05141:intron 20.0%
!!! AAATACCAAAATTGACTTTA+TGG + chr3.4:64453468-64453487 None:intergenic 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr3.4:64452866-64452885 MS.gene05141:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + chr3.4:64452885-64452866 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr3.4:64452805-64452824 MS.gene05141:intron 20.0%
!!! TAGTGACTGAAAATTTTATA+GGG + chr3.4:64452507-64452526 None:intergenic 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG - chr3.4:64452865-64452884 MS.gene05141:intron 20.0%
!!! TGTTTGTTTGATTTCAATTT+TGG + chr3.4:64453296-64453315 None:intergenic 20.0%
!!! TTCACTTTTACATGAATAAA+AGG + chr3.4:64453086-64453105 None:intergenic 20.0%
! GGTAAAAAGAAGTTTATAGA+AGG - chr3.4:64453626-64453645 MS.gene05141:CDS 25.0%
! TTAAGCATTATGAATTCAGT+AGG + chr3.4:64452221-64452240 None:intergenic 25.0%
! TTGAATGGTATAATGTGTTA+AGG + chr3.4:64453236-64453255 None:intergenic 25.0%
! TTTACACTTACGAGATATAT+GGG - chr3.4:64453747-64453766 MS.gene05141:CDS 25.0%
! TTTCCATTATGAATCAAAAC+CGG + chr3.4:64451979-64451998 None:intergenic 25.0%
!! AAATTTTCAATCACTACCTT+TGG + chr3.4:64452802-64452821 None:intergenic 25.0%
!! AAATTTTCAGTCACTACTTT+TGG - chr3.4:64452511-64452530 MS.gene05141:intron 25.0%
!! AACTACAAATATTAGCTTCA+CGG - chr3.4:64453179-64453198 MS.gene05141:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr3.4:64452853-64452834 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+CGG - chr3.4:64452835-64452854 MS.gene05141:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr3.4:64452854-64452835 None:intergenic 25.0%
!! ATAAGCCATAAAGTCAATTT+TGG - chr3.4:64453460-64453479 MS.gene05141:intron 25.0%
!! ATTTTCACTAAATGTGTGTT+TGG - chr3.4:64452315-64452334 MS.gene05141:intron 25.0%
!! CATTGGGTTAAATATGTTTT+TGG + chr3.4:64452893-64452912 None:intergenic 25.0%
!! CTTTTACATGAATAAAAGGA+CGG + chr3.4:64453082-64453101 None:intergenic 25.0%
!! GTAGTGACTGAAAATTTTAT+AGG + chr3.4:64452508-64452527 None:intergenic 25.0%
!! TTTTACACTTACGAGATATA+TGG - chr3.4:64453746-64453765 MS.gene05141:CDS 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG + chr3.4:64452448-64452467 None:intergenic 25.0%
!!! GATATAGTATTGACTTTGAA+TGG + chr3.4:64453251-64453270 None:intergenic 25.0%
!!! TGTTTGATTTCAATTTTGGT+GGG + chr3.4:64453292-64453311 None:intergenic 25.0%
!!! TTGTTTGATTTCAATTTTGG+TGG + chr3.4:64453293-64453312 None:intergenic 25.0%
AAGTCATCTCCATCAAAATA+TGG + chr3.4:64453686-64453705 None:intergenic 30.0%
AATGAGAGTGAAAATTGCTT+TGG - chr3.4:64451861-64451880 MS.gene05141:CDS 30.0%
TGAATATATTCTTGCAGTGT+CGG - chr3.4:64452922-64452941 MS.gene05141:intron 30.0%
TGAATTCAGTAGGTTAGATT+TGG + chr3.4:64452211-64452230 None:intergenic 30.0%
TGTTGGATTCTAATTGATGT+AGG - chr3.4:64453550-64453569 MS.gene05141:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr3.4:64452821-64452840 MS.gene05141:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr3.4:64452840-64452821 None:intergenic 30.0%
TTCCATTATGAATCAAAACC+GGG + chr3.4:64451978-64451997 None:intergenic 30.0%
! CAAAACCATAGATTTTGTGA+GGG + chr3.4:64453862-64453881 None:intergenic 30.0%
! GTATCATGGCTTAATTTTGT+TGG - chr3.4:64453533-64453552 MS.gene05141:intron 30.0%
!! AAAATTGCTTTGGAAGAGAA+GGG - chr3.4:64451871-64451890 MS.gene05141:CDS 30.0%
!! AAATCTATGGTTTTGCAATG+CGG - chr3.4:64453867-64453886 MS.gene05141:CDS 30.0%
!! ATTTTGATGGAGATGACTTT+GGG - chr3.4:64453687-64453706 MS.gene05141:CDS 30.0%
!! GTTTGATTTCAATTTTGGTG+GGG + chr3.4:64453291-64453310 None:intergenic 30.0%
!! TACTTTAAAATAGGGACCAA+AGG - chr3.4:64452783-64452802 MS.gene05141:intron 30.0%
!!! TATTTTGATGGAGATGACTT+TGG - chr3.4:64453686-64453705 MS.gene05141:CDS 30.0%
AATGTAATCTCCCCAAAACT+TGG + chr3.4:64452100-64452119 None:intergenic 35.0%
AGTGTAAAACCAACTAGTGA+AGG + chr3.4:64453735-64453754 None:intergenic 35.0%
ATGCGGTATAAACAGAAACA+TGG - chr3.4:64453884-64453903 MS.gene05141:CDS 35.0%
ATTCAGTAGGTTAGATTTGG+AGG + chr3.4:64452208-64452227 None:intergenic 35.0%
CATATATTCAACCTTGTGCT+AGG - chr3.4:64453029-64453048 MS.gene05141:intron 35.0%
GTGTAAAACCAACTAGTGAA+GGG + chr3.4:64453734-64453753 None:intergenic 35.0%
TTGAGTACATTGATGAAGCT+TGG - chr3.4:64452025-64452044 MS.gene05141:CDS 35.0%
! CTCTTTTTCCATACACCTTT+TGG + chr3.4:64453816-64453835 None:intergenic 35.0%
! GCAAAACCATAGATTTTGTG+AGG + chr3.4:64453863-64453882 None:intergenic 35.0%
!! GAAAATTGCTTTGGAAGAGA+AGG - chr3.4:64451870-64451889 MS.gene05141:CDS 35.0%
!! GACGGACTAAAATGAAAAGT+TGG - chr3.4:64452853-64452872 MS.gene05141:intron 35.0%
!!! ATCCCGGTTTTGATTCATAA+TGG - chr3.4:64451973-64451992 MS.gene05141:CDS 35.0%
!!! GTGTGGTTTTGTTGGATTTT+TGG - chr3.4:64451824-64451843 MS.gene05141:CDS 35.0%
AAACATGACTAAGGACAGTG+TGG - chr3.4:64451807-64451826 MS.gene05141:CDS 40.0%
AAGGAAGCTATGGAAAGGAA+AGG - chr3.4:64453586-64453605 MS.gene05141:intron 40.0%
AAGGTTGAAGAACAAGAGGA+AGG - chr3.4:64453605-64453624 MS.gene05141:CDS 40.0%
AATAAGTGAGACCTAGCACA+AGG + chr3.4:64453043-64453062 None:intergenic 40.0%
ACTCTCATTGCATATACGCT+TGG + chr3.4:64451850-64451869 None:intergenic 40.0%
AGGAAAGGTTGAAGAACAAG+AGG - chr3.4:64453601-64453620 MS.gene05141:CDS 40.0%
ATTCGAAGGAAGCTATGGAA+AGG - chr3.4:64453581-64453600 MS.gene05141:intron 40.0%
CTCTTATACCCTTCACTAGT+TGG - chr3.4:64453723-64453742 MS.gene05141:CDS 40.0%
GAGGGACTAAAACGAAAAGT+TGG + chr3.4:64452460-64452479 None:intergenic 40.0%
GTGTATGGAAAAAGAGAGTG+TGG - chr3.4:64453820-64453839 MS.gene05141:CDS 40.0%
TGACTTTGGGTATGTTGATG+TGG - chr3.4:64453700-64453719 MS.gene05141:CDS 40.0%
TGTAGGTATACAGCATTCGA+AGG - chr3.4:64453567-64453586 MS.gene05141:intron 40.0%
! AAGACTCTAGAAGATGAGCT+TGG - chr3.4:64453653-64453672 MS.gene05141:CDS 40.0%
! ACCGGGATCTTTTTGTAAAC+CGG + chr3.4:64451961-64451980 None:intergenic 40.0%
! CTTTCATGTGATTGCCACTT+GGG + chr3.4:64453421-64453440 None:intergenic 40.0%
! GAGTTACTCATAGGGTATCA+TGG - chr3.4:64453519-64453538 MS.gene05141:intron 40.0%
!! GGAGACAAGCCATATTTTGA+TGG - chr3.4:64453674-64453693 MS.gene05141:CDS 40.0%
!! TCTGCTTTTAGAGATGAACC+CGG - chr3.4:64451939-64451958 MS.gene05141:CDS 40.0%
!!! TAAGGACAGTGTGGTTTTGT+TGG - chr3.4:64451816-64451835 MS.gene05141:CDS 40.0%
ACAGCATTCGAAGGAAGCTA+TGG - chr3.4:64453576-64453595 MS.gene05141:intron 45.0%
AGTGTCCTAAGCTTGTAGCT+TGG - chr3.4:64453789-64453808 MS.gene05141:CDS 45.0%
ATCCATACTTCAAGCCCAAG+TGG - chr3.4:64453404-64453423 MS.gene05141:intron 45.0%
CCAAGTGGCAATCACATGAA+AGG - chr3.4:64453419-64453438 MS.gene05141:intron 45.0%
CCCGGTTTACAAAAAGATCC+CGG - chr3.4:64451957-64451976 MS.gene05141:CDS 45.0%
CCTCACCCTCACAAAATCTA+TGG - chr3.4:64453854-64453873 MS.gene05141:CDS 45.0%
CCTTTCATGTGATTGCCACT+TGG + chr3.4:64453422-64453441 None:intergenic 45.0%
GTGTCCTAAGCTTGTAGCTT+GGG - chr3.4:64453790-64453809 MS.gene05141:CDS 45.0%
! AGCGATCACAAGCCAAGTTT+TGG - chr3.4:64452085-64452104 MS.gene05141:CDS 45.0%
! CCATAGATTTTGTGAGGGTG+AGG + chr3.4:64453857-64453876 None:intergenic 45.0%
! CCGGGATCTTTTTGTAAACC+GGG + chr3.4:64451960-64451979 None:intergenic 45.0%
! CGATCACAAGCCAAGTTTTG+GGG - chr3.4:64452087-64452106 MS.gene05141:CDS 45.0%
! GCGATCACAAGCCAAGTTTT+GGG - chr3.4:64452086-64452105 MS.gene05141:CDS 45.0%
! TGGCTTGTGATCGCTTGAAA+GGG + chr3.4:64452080-64452099 None:intergenic 45.0%
!! TTGGCTTGTGATCGCTTGAA+AGG + chr3.4:64452081-64452100 None:intergenic 45.0%
!! TTTAAAAAAAATTATATGTT+TGG + chr3.4:64453496-64453515 None:intergenic 5.0%
!!! AAAAAATTCTAAATTTTTTT+GGG - chr3.4:64452690-64452709 MS.gene05141:intron 5.0%
!!! ATAAAAAAATCTATTTTTTT+TGG + chr3.4:64452614-64452633 None:intergenic 5.0%
!!! TAAAAAAATCTATTTTTTTT+GGG + chr3.4:64452613-64452632 None:intergenic 5.0%
!!! TAAAAAATTCTAAATTTTTT+TGG - chr3.4:64452689-64452708 MS.gene05141:intron 5.0%
AGCTTGTAGCTTGGGCCAAA+AGG - chr3.4:64453798-64453817 MS.gene05141:CDS 50.0%
GATCGCTTGAAAGGGTCAGA+GGG + chr3.4:64452072-64452091 None:intergenic 50.0%
TGATCGCTTGAAAGGGTCAG+AGG + chr3.4:64452073-64452092 None:intergenic 50.0%
TTGGCCCAAGCTACAAGCTT+AGG + chr3.4:64453797-64453816 None:intergenic 50.0%
! AGCTTGGGCCAAAAGGTGTA+TGG - chr3.4:64453805-64453824 MS.gene05141:CDS 50.0%
! TGCCACTTGGGCTTGAAGTA+TGG + chr3.4:64453409-64453428 None:intergenic 50.0%
!! ATTCTTGCAGTGTCGGCTCA+AGG - chr3.4:64452929-64452948 MS.gene05141:intron 50.0%
!! GGGTGTTTTAGGCTCACAGA+AGG - chr3.4:64452950-64452969 MS.gene05141:intron 50.0%
!! TTCTTGCAGTGTCGGCTCAA+GGG - chr3.4:64452930-64452949 MS.gene05141:intron 50.0%
!!! TGTCGGCTCAAGGGTGTTTT+AGG - chr3.4:64452939-64452958 MS.gene05141:intron 50.0%
GGGTCAGAGGGCAAAAGAGA+AGG + chr3.4:64452060-64452079 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 64451799 64453916 64451799 ID=MS.gene05141
chr3.4 mRNA 64451799 64453916 64451799 ID=MS.gene05141.t1;Parent=MS.gene05141
chr3.4 exon 64453587 64453916 64453587 ID=MS.gene05141.t1.exon1;Parent=MS.gene05141.t1
chr3.4 CDS 64453587 64453916 64453587 ID=cds.MS.gene05141.t1;Parent=MS.gene05141.t1
chr3.4 exon 64451799 64452143 64451799 ID=MS.gene05141.t1.exon2;Parent=MS.gene05141.t1
chr3.4 CDS 64451799 64452143 64451799 ID=cds.MS.gene05141.t1;Parent=MS.gene05141.t1
Gene Sequence

>MS.gene05141

ATGAGTCAAAACATGACTAAGGACAGTGTGGTTTTGTTGGATTTTTGGCCAAGCGTATATGCAATGAGAGTGAAAATTGCTTTGGAAGAGAAGGGAGTCTCATATGAGTGTAGACAAGAAGATTTTCAAAATAAGAGCTCTCTGCTTTTAGAGATGAACCCGGTTTACAAAAAGATCCCGGTTTTGATTCATAATGGAAAACCCATATGTGAATCACTTAATATAGTTGAGTACATTGATGAAGCTTGGAATCACAAACCTTCTCTTTTGCCCTCTGACCCTTTCAAGCGATCACAAGCCAAGTTTTGGGGAGATTACATTGACAAACATGTAAGTTACTATATAGCTAGCTTTATCTATTTTAGAGTGATGTATTTGTATGTTTTTTTATCAATGGATCGTTCAGCCTCCAAATCTAACCTACTGAATTCATAATGCTTAAGTAGAGAGATACATATGAATGAAAGAATTTGAAAAAGAAAGTATATAGTTCTTTCATAAAAATAAAATAAAAACATTTTCACTAAATGTGTGTTTGGTTATGTGATAACACAAATTGATTTTGAATGAATTCATTTTATAAAATCGATTATGATTAAAAGTTGGTTAAATGTAAAATGATTTAGGGTTAAATATGTTTTTAGTCCCTATAAATATACCAACTTTTCGTTTTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCCCTATAAAATTTTCAGTCACTACTTTTGGTCCCTATTTTAAAATTAATTTTTATATTTTTTTAATGAAATTGTGCAGAAATGTGTAGAATATTGTAAAAATCTTTCCCAAAAAAAATAGATTTTTTTATCAAAACATAAATTTAATATGAATTTTTAAAAATTCATATTAAATTCATGTTTTGTTAAAAAATTCTAAATTTTTTTGGGAGAGATTCTTATAATATTATGAATTTTTCTGCAAAATTTTATTCAAAAATATGAATTCTAGATATGATTTTACTTTAAAATAGGGACCAAAGGTAGTGATTGAAAATTTTATAGGGACTAAAAGTTGAAGGAAAATTTTAGACGGACTAAAATGAAAAGTTGGTATATTTATAGGGACCAAAAACATATTTAACCCAATGATTTATGTTTGAATATATTCTTGCAGTGTCGGCTCAAGGGTGTTTTAGGCTCACAGAAGGAAAAAAAAACATTGAATTTTACAAGCAAAAAGACATCATATTCTAATAAAAAAAGACATATATTCAACCTTGTGCTAGGTCTCACTTATTGTTAAAAATTATTGGACCGTCCTTTTATTCATGTAAAAGTGAATTGCATAATAAATTCAAGGCTCTTGACCAAAAAAAAAAAAAAATCAAGGCTACGATTAATTATAAAAGTCAAAAACTACAAATATTAGCTTCACGGAAAATCAATTCTATATGTAAAATCAATTATACCTTAACACATTATACCATTCAAAGTCAATACTATATCTCTAGAATCAATTTTGACCCCACCAAAATTGAAATCAAACAAACACATAATTTGAGTTCAGCCATAAATATTGAACCATATTTTGTGAACTAGTATATAATTTGATCTTTGTTACTCCCACTTTTACATTATTATCCATACTTCAAGCCCAAGTGGCAATCACATGAAAGGACATACTAGAAATATAGCATAAGCCATAAAGTCAATTTTGGTATTTTTTCACCAAACATATAATTTTTTTTAAAAAAGAGTTACTCATAGGGTATCATGGCTTAATTTTGTTGGATTCTAATTGATGTAGGTATACAGCATTCGAAGGAAGCTATGGAAAGGAAAGGTTGAAGAACAAGAGGAAGGTAAAAAGAAGTTTATAGAAGGCTTGAAGACTCTAGAAGATGAGCTTGGAGACAAGCCATATTTTGATGGAGATGACTTTGGGTATGTTGATGTGGCTCTTATACCCTTCACTAGTTGGTTTTACACTTACGAGATATATGGGAAATTAAGCATTGAGAAAGAGTGTCCTAAGCTTGTAGCTTGGGCCAAAAGGTGTATGGAAAAAGAGAGTGTGGTAAAGTCACTTCCTCACCCTCACAAAATCTATGGTTTTGCAATGCGGTATAAACAGAAACATGGACTTGAATAG

Protein sequence

>MS.gene05141.t1

MSQNMTKDSVVLLDFWPSVYAMRVKIALEEKGVSYECRQEDFQNKSSLLLEMNPVYKKIPVLIHNGKPICESLNIVEYIDEAWNHKPSLLPSDPFKRSQAKFWGDYIDKHVYSIRRKLWKGKVEEQEEGKKKFIEGLKTLEDELGDKPYFDGDDFGYVDVALIPFTSWFYTYEIYGKLSIEKECPKLVAWAKRCMEKESVVKSLPHPHKIYGFAMRYKQKHGLE